AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0843330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0843330 MtrunA17_Chr5g0414031 94.975 199 10 0 1 199 132 330 1.57e-131 372
Msa0843330 MtrunA17_Chr5g0413991 87.356 87 11 0 113 199 20 106 6.60e-51 159
Msa0843330 MtrunA17_Chr5g0414011 90.000 70 7 0 130 199 1 70 4.65e-41 133
Msa0843330 MtrunA17_Chr5g0414001 71.605 81 18 2 1 81 207 282 3.94e-32 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0843330 AT1G24040.3 60.804 199 75 2 1 197 114 311 1.62e-82 248
Msa0843330 AT1G24040.2 60.804 199 75 2 1 197 114 311 1.62e-82 248
Msa0843330 AT1G24040.1 60.804 199 75 2 1 197 114 311 1.62e-82 248

Find 134 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTTGTGTTCATGTTAAT+TGG 0.200863 5_4:-20982981 Msa0843330:three_prime_UTR
TACAAAGAGTGAACTCTATT+TGG 0.217554 5_4:+20982933 None:intergenic
ATTGGTTTGGTGTATATATA+TGG 0.247486 5_4:-20982963 Msa0843330:three_prime_UTR
AAGTTTAGACATTAGAATTA+TGG 0.252110 5_4:+20982831 None:intergenic
AGAATAATTCTGGTGTTAAT+TGG 0.262858 5_4:+20989395 None:intergenic
GAAATTTCTGCGAGTGGTTT+TGG 0.263428 5_4:+20989275 None:intergenic
AAAGAGACCTGTTGTGTTAC+AGG 0.269323 5_4:-20983525 Msa0843330:intron
GAACATGGCAAATCTGTTTC+TGG 0.272221 5_4:+20983800 None:intergenic
GAAGAATGGAGATTGGTTTC+AGG 0.284439 5_4:-20983577 Msa0843330:three_prime_UTR
TAAGCCTTATATTTGTAATA+TGG 0.284831 5_4:-20988757 Msa0843330:CDS
TATAGAGGTAGTGGTGTTAA+TGG 0.288150 5_4:-20988882 Msa0843330:CDS
ATCTGTTAGGGTTTGGGATT+GGG 0.294489 5_4:+20989185 None:intergenic
CCCTCAAATCCGGCACCGTC+TGG 0.317111 5_4:-20989079 Msa0843330:five_prime_UTR
GGGGTTTGTTAAGGGGAAGT+GGG 0.323776 5_4:+20989241 None:intergenic
GGGTTTGTTAAGGGGAAGTG+GGG 0.331860 5_4:+20989242 None:intergenic
GAAGGAATCTGTTAGGGTTT+GGG 0.335979 5_4:+20989179 None:intergenic
GGGAATAAAGAGAATAATTC+TGG 0.339686 5_4:+20989385 None:intergenic
GGCTTATCTTTCAGCGGATC+CGG 0.345738 5_4:+20988774 None:intergenic
GGAAGGAATCTGTTAGGGTT+TGG 0.349371 5_4:+20989178 None:intergenic
GTGGTGGAGGGTGGTGAGTT+CGG 0.353044 5_4:+20989128 None:intergenic
GTTTGAGGAAGGAATCTGTT+AGG 0.353565 5_4:+20989172 None:intergenic
TGTGTTCATGTTAATTGGTT+TGG 0.369085 5_4:-20982976 Msa0843330:three_prime_UTR
ACAGCCATATTACAAATATA+AGG 0.375127 5_4:+20988753 None:intergenic
CAAGCATCTTTAATATTTGT+AGG 0.375368 5_4:+20983374 None:intergenic
GGTAAGTGGAGAGGTGGTGG+AGG 0.390544 5_4:+20989115 None:intergenic
AATCTGTTAGGGTTTGGGAT+TGG 0.394837 5_4:+20989184 None:intergenic
TGTCACAGTCTCTTTCCCTT+AGG 0.411997 5_4:-20983157 Msa0843330:three_prime_UTR
AGAGGTAAGTGGAGAGGTGG+TGG 0.416599 5_4:+20989112 None:intergenic
AATACACATAAAATTTGCTC+TGG 0.419378 5_4:-20983348 Msa0843330:three_prime_UTR
ATCATATGTTGTTCACCAAT+TGG 0.429499 5_4:+20989463 None:intergenic
AATTGGTGACGGTGGTGGTT+TGG 0.431624 5_4:+20989412 None:intergenic
CCCAGACGGTGCCGGATTTG+AGG 0.432997 5_4:+20989078 None:intergenic
CCAGACGGTGCCGGATTTGA+GGG 0.436994 5_4:+20989079 None:intergenic
GTTTACTTCTACCACACCTT+CGG 0.440118 5_4:+20983120 None:intergenic
TATATATTTCTCTTATCTGT+AGG 0.440142 5_4:-20983548 Msa0843330:three_prime_UTR
TGAAACCAATCTCCATTCTT+CGG 0.440228 5_4:+20983579 None:intergenic
AGATTTGTCCACAATGGACT+TGG 0.440968 5_4:-20983051 Msa0843330:three_prime_UTR
TCTCCCTTCAGGAGGGGCAT+TGG 0.444220 5_4:-20984037 Msa0843330:intron
GGTTTGTTAAGGGGAAGTGG+GGG 0.446710 5_4:+20989243 None:intergenic
TTGTACAAGAGCACCATTAA+CGG 0.450715 5_4:-20982879 Msa0843330:three_prime_UTR
AAGAAGAGAAGAGTTTGAAG+TGG 0.456631 5_4:+20989217 None:intergenic
TAATTCTACTCTTCCGTCGC+CGG 0.460000 5_4:-20988793 Msa0843330:CDS
TCATTTACCTGTAACACAAC+AGG 0.460609 5_4:+20983518 None:intergenic
GGCTATATGAAAGGTACCTA+AGG 0.462117 5_4:+20983141 None:intergenic
GAATTATGGACAAATCTATT+CGG 0.462197 5_4:+20982845 None:intergenic
GTTTACCGAAGAATGGAGAT+TGG 0.462281 5_4:-20983584 Msa0843330:three_prime_UTR
GAGGAGTTTGATGCCGCATA+TGG 0.462290 5_4:-20988922 Msa0843330:CDS
CAAGCGAGGAACTGATTTCT+CGG 0.465423 5_4:-20983997 Msa0843330:CDS
TGCTTTCTATATGTTCATCA+AGG 0.466887 5_4:-20983300 Msa0843330:three_prime_UTR
AGCTGTGGCCATTGTGTTGT+GGG 0.466937 5_4:+20989365 None:intergenic
ATAAGGTTGAAGAATAGAAA+AGG 0.467153 5_4:-20983086 Msa0843330:three_prime_UTR
TCAATCTTTAAATTTGAAAG+TGG 0.468655 5_4:-20983268 Msa0843330:three_prime_UTR
TGCGTCTCTGCAACAACAGC+AGG 0.469429 5_4:+20983864 None:intergenic
CGCTATTGTATGCTTGCTTG+CGG 0.471189 5_4:-20989027 Msa0843330:CDS
GTAAACCAAGGGTGATGATA+AGG 0.471964 5_4:-20983103 Msa0843330:three_prime_UTR
ATTTCTCGGATGAGTTCATC+AGG 0.474442 5_4:-20983983 Msa0843330:CDS
CCTCAAATCCGGCACCGTCT+GGG 0.475944 5_4:-20989078 Msa0843330:five_prime_UTR
AGTGGAGAGGTGGTGGAGGG+TGG 0.476304 5_4:+20989119 None:intergenic
AAGAGAAGAGTTTGAAGTGG+GGG 0.478695 5_4:+20989220 None:intergenic
TGAGGAATTTACCTGGTTTG+AGG 0.481394 5_4:+20989157 None:intergenic
AACACAGTAATATACCCTTT+CGG 0.482167 5_4:+20988978 None:intergenic
CTACAAATATTAAAGATGCT+TGG 0.482385 5_4:-20983373 Msa0843330:three_prime_UTR
ACCAGAGCACTAGTTCCAAT+TGG 0.482845 5_4:-20989478 Msa0843330:five_prime_UTR
TTTGAGGAAGGAATCTGTTA+GGG 0.483960 5_4:+20989173 None:intergenic
AGAAGAGAAGAGTTTGAAGT+GGG 0.485933 5_4:+20989218 None:intergenic
TTCAACCTTATCATCACCCT+TGG 0.487256 5_4:+20983098 None:intergenic
TGAAAGAAAATAATAATGCT+AGG 0.490110 5_4:-20983211 Msa0843330:three_prime_UTR
CTATTGAACCGTACTAATCC+TGG 0.494284 5_4:-20983235 Msa0843330:three_prime_UTR
CTGTGGATAAATCTCTTAGA+AGG 0.499813 5_4:-20988734 Msa0843330:intron
CCTTCAGGAGGGGCATTGGA+TGG 0.505384 5_4:-20984033 Msa0843330:intron
GTGTTAATTGGTGACGGTGG+TGG 0.507189 5_4:+20989407 None:intergenic
AGAGAAGAGTTTGAAGTGGG+GGG 0.511214 5_4:+20989221 None:intergenic
CATTGGATGGCATCTTCTAA+AGG 0.517341 5_4:-20984020 Msa0843330:CDS
ACCAATTGGAACTAGTGCTC+TGG 0.520874 5_4:+20989477 None:intergenic
GTAAGTGGAGAGGTGGTGGA+GGG 0.520989 5_4:+20989116 None:intergenic
GTTTGGATAATGAGAAGAAG+AGG 0.523562 5_4:+20989429 None:intergenic
GAAAGAAAATAATAATGCTA+GGG 0.523711 5_4:-20983210 Msa0843330:three_prime_UTR
TGAAACAGTATTTGATTGAA+CGG 0.524045 5_4:-20988944 Msa0843330:CDS
GGTGCCGGATTTGAGGGTAG+TGG 0.525867 5_4:+20989085 None:intergenic
TTATATTTGTAATATGGCTG+TGG 0.528854 5_4:-20988751 Msa0843330:CDS
ACACCCACTACCCTCAAATC+CGG 0.529652 5_4:-20989089 Msa0843330:five_prime_UTR
TCTTTCAGCCAGGATTAGTA+CGG 0.532155 5_4:+20983227 None:intergenic
TACTCGAACCCAGACGGTGC+CGG 0.533171 5_4:+20989070 None:intergenic
TTGGAACTAGTGCTCTGGTA+AGG 0.543677 5_4:+20989482 None:intergenic
ATACACATAAAATTTGCTCT+GGG 0.546938 5_4:-20983347 Msa0843330:three_prime_UTR
GAAGAGGAAATGCAGTTGGC+TGG 0.547866 5_4:-20988849 Msa0843330:CDS
GTAGTGGGTGTAGAGGTAAG+TGG 0.548255 5_4:+20989101 None:intergenic
GAATTTACCTGGTTTGAGGA+AGG 0.554517 5_4:+20989161 None:intergenic
TTTGATGATCTTACAAGATG+AGG 0.555846 5_4:+20983026 None:intergenic
GAGAAGAGTTTGAAGTGGGG+GGG 0.556669 5_4:+20989222 None:intergenic
TCTTTCAGCGGATCCGGCGA+CGG 0.560526 5_4:+20988780 None:intergenic
CACACCTTCGGCTATATGAA+AGG 0.563763 5_4:+20983132 None:intergenic
AATCGATGATGTTTCCGAAA+GGG 0.568903 5_4:-20988992 Msa0843330:CDS
GTGCCGGATTTGAGGGTAGT+GGG 0.569638 5_4:+20989086 None:intergenic
CTAGTGCTCTGGTAAGGATG+TGG 0.573194 5_4:+20989488 None:intergenic
GAAGAGAAGAGTTTGAAGTG+GGG 0.573693 5_4:+20989219 None:intergenic
TGTAGAGGTAAGTGGAGAGG+TGG 0.574824 5_4:+20989109 None:intergenic
GAGCTGTGGCCATTGTGTTG+TGG 0.579560 5_4:+20989364 None:intergenic
GGTACCTTTCATATAGCCGA+AGG 0.582358 5_4:-20983136 Msa0843330:three_prime_UTR
GCAATCAAAGTCGCCATATG+CGG 0.587969 5_4:+20988909 None:intergenic
ACAGATTCCTTCCTCAAACC+AGG 0.591655 5_4:-20989168 Msa0843330:five_prime_UTR
GTGTTTGTGAGGAATTTACC+TGG 0.595004 5_4:+20989150 None:intergenic
TACTCATAGTCATCAGAACA+TGG 0.595102 5_4:+20983785 None:intergenic
GCTATATGAAAGGTACCTAA+GGG 0.595893 5_4:+20983142 None:intergenic
TGGTGAGTTCGGTGTTTGTG+AGG 0.598575 5_4:+20989139 None:intergenic
TGGTGGTGATGAGGTTGAAG+CGG 0.600126 5_4:+20989301 None:intergenic
GGGTGTAGAGGTAAGTGGAG+AGG 0.611902 5_4:+20989106 None:intergenic
GGTAGTGGTGTTAATGGTGA+TGG 0.613053 5_4:-20988876 Msa0843330:CDS
GAAAGAGAAATTTCTGCGAG+TGG 0.613884 5_4:+20989269 None:intergenic
TAAATTTGAAAGTGGCACAT+CGG 0.619385 5_4:-20983260 Msa0843330:three_prime_UTR
ATGAGGAACCAAGTCCATTG+TGG 0.620872 5_4:+20983043 None:intergenic
GAAAGAGAGTGAAAGAGCTG+TGG 0.621573 5_4:+20989350 None:intergenic
ATATAAGGCTTATCTTTCAG+CGG 0.621641 5_4:+20988768 None:intergenic
TCTTTATTCCCACAACACAA+TGG 0.625471 5_4:-20989373 Msa0843330:five_prime_UTR
AAAGAAAATAATAATGCTAG+GGG 0.626405 5_4:-20983209 Msa0843330:three_prime_UTR
TCTGGAGGCATACTTAAGAG+AGG 0.628606 5_4:+20983818 None:intergenic
CTTTCATATAGCCGAAGGTG+TGG 0.630217 5_4:-20983131 Msa0843330:three_prime_UTR
TAATGGTGATGGTGAAGAAG+AGG 0.637013 5_4:-20988865 Msa0843330:CDS
GAATCGATGATGTTTCCGAA+AGG 0.637311 5_4:-20988993 Msa0843330:CDS
ATTCTGGTGTTAATTGGTGA+CGG 0.638358 5_4:+20989401 None:intergenic
TTTGAGGGTAGTGGGTGTAG+AGG 0.639937 5_4:+20989094 None:intergenic
AGTAAAAGACAACATGTATG+TGG 0.643697 5_4:-20983766 Msa0843330:exon
TGAAGAAGAGGAAATGCAGT+TGG 0.653928 5_4:-20988853 Msa0843330:CDS
CATGGCAAATCTGTTTCTGG+AGG 0.657257 5_4:+20983803 None:intergenic
TGAGAAGAAGAGGAGTAACA+TGG 0.658029 5_4:+20989439 None:intergenic
GCATCTTCTAAAGGCAAGCG+AGG 0.659909 5_4:-20984011 Msa0843330:CDS
ACAAGAGCACCATTAACGGA+TGG 0.661687 5_4:-20982875 Msa0843330:three_prime_UTR
ACGCATTACTCGAACCCAGA+CGG 0.663940 5_4:+20989064 None:intergenic
AATGGTAGCAAATATGATCG+AGG 0.680001 5_4:-20983616 Msa0843330:intron
GTGTGGTAGAAGTAAACCAA+GGG 0.681743 5_4:-20983114 Msa0843330:three_prime_UTR
AACAGTATTTGATTGAACGG+AGG 0.685549 5_4:-20988941 Msa0843330:CDS
GGTGTGGTAGAAGTAAACCA+AGG 0.698660 5_4:-20983115 Msa0843330:three_prime_UTR
CTGGTGTTAATTGGTGACGG+TGG 0.716949 5_4:+20989404 None:intergenic
AAGAAAATAATAATGCTAGG+GGG 0.732296 5_4:-20983208 Msa0843330:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGTAATTAATTTTGTAT+AGG - chr5_4:20987320-20987339 Msa0843330:intron 10.0%
!! AGAAAATAATAAATAGTTTA+CGG - chr5_4:20987416-20987435 Msa0843330:intron 10.0%
!! TAAAAATTAGTTAATGTGTT+TGG + chr5_4:20984196-20984215 None:intergenic 15.0%
!! TATCAAATTTGCAAAAAATT+TGG - chr5_4:20984365-20984384 Msa0843330:intron 15.0%
!! CAATCTTAATCTTTAAATAA+TGG + chr5_4:20984617-20984636 None:intergenic 15.0%
!! ATGACTAAAATGAATAATTT+GGG + chr5_4:20985275-20985294 None:intergenic 15.0%
!! AATGACTAAAATGAATAATT+TGG + chr5_4:20985276-20985295 None:intergenic 15.0%
!! AAATGTAATTAATTTCGTAT+AGG - chr5_4:20985310-20985329 Msa0843330:intron 15.0%
!! AAATAACATTAATGTTTCAT+TGG + chr5_4:20985555-20985574 None:intergenic 15.0%
!! TAAATAGTTAATGGTATAAA+AGG + chr5_4:20985580-20985599 None:intergenic 15.0%
!! AAATGTAATCAATTATGTAT+TGG + chr5_4:20985691-20985710 None:intergenic 15.0%
!! TAATTGTAAATTCGTAAAAT+TGG + chr5_4:20985918-20985937 None:intergenic 15.0%
!! TAAAAATTAGTTAATGTGTT+TGG + chr5_4:20984196-20984215 None:intergenic 15.0%
!! TATCAAATTTGCAAAAAATT+TGG - chr5_4:20984365-20984384 Msa0843330:intron 15.0%
!! TTAAAACTATAAAGTGAATA+GGG + chr5_4:20986427-20986446 None:intergenic 15.0%
!! ATTAAAACTATAAAGTGAAT+AGG + chr5_4:20986428-20986447 None:intergenic 15.0%
!! TTTCCATTATTTAAAGATTA+AGG - chr5_4:20984611-20984630 Msa0843330:intron 15.0%
!! AAATAACATTAATGTTTCAT+TGG + chr5_4:20985555-20985574 None:intergenic 15.0%
!! TAAATAGTTAATGGTATAAA+AGG + chr5_4:20985580-20985599 None:intergenic 15.0%
!! AAAGAGTAATAAATAGTTAA+TGG + chr5_4:20987598-20987617 None:intergenic 15.0%
!! AAATGTAATCAATTATGTAT+TGG + chr5_4:20985691-20985710 None:intergenic 15.0%
!!! GTTGACATATTAATTTTTTT+TGG + chr5_4:20987894-20987913 None:intergenic 15.0%
!!! GAGATTTCTTTTAATGTTTA+TGG - chr5_4:20983473-20983492 Msa0843330:intron 20.0%
!!! TAAGCCTTATATTTGTAATA+TGG - chr5_4:20983535-20983554 Msa0843330:three_prime_UTR 20.0%
!! TAAACATTACACATACTTTA+AGG - chr5_4:20983584-20983603 Msa0843330:three_prime_UTR 20.0%
!! AAATCAACTATACATTCTAT+TGG + chr5_4:20983671-20983690 None:intergenic 20.0%
!! GAAATGCATAAATTTAACAA+CGG + chr5_4:20984143-20984162 None:intergenic 20.0%
!!! CTTATTTCTCTGATAAATTT+AGG - chr5_4:20984501-20984520 Msa0843330:intron 20.0%
!! AGCTATATTTAATATCAAAG+AGG + chr5_4:20984837-20984856 None:intergenic 20.0%
!! ACAAAATTATCCTTCATTAA+CGG - chr5_4:20985354-20985373 Msa0843330:intron 20.0%
!! AAGTAACATTAATGTTTCAT+TGG - chr5_4:20985441-20985460 Msa0843330:intron 20.0%
!! TTATAAAGCGACTTATAATT+TGG + chr5_4:20985530-20985549 None:intergenic 20.0%
!! AGAGAGTAATAAATAGTTAA+TGG + chr5_4:20985589-20985608 None:intergenic 20.0%
!! ATTTCTTAATCTGTGTAAAA+TGG - chr5_4:20985707-20985726 Msa0843330:intron 20.0%
!! GTCAAAATGACTTATAATTT+GGG - chr5_4:20985729-20985748 Msa0843330:intron 20.0%
!! TTCGTAAAATTGGTAAATTT+AGG + chr5_4:20985908-20985927 None:intergenic 20.0%
!! AGAAATATAGATTAATGAGT+TGG - chr5_4:20986041-20986060 Msa0843330:intron 20.0%
!! GAAATGCATAAATTTAACAA+TGG + chr5_4:20984143-20984162 None:intergenic 20.0%
!! CAACCTTAATCTTTAAATAA+TGG + chr5_4:20986624-20986643 None:intergenic 20.0%
!! TGCTATATTTAATATCAAAG+AGG + chr5_4:20986844-20986863 None:intergenic 20.0%
!!! GAAAGTATTTAAAACTAACA+AGG + chr5_4:20987057-20987076 None:intergenic 20.0%
!! AGCTTAATTATTTATATTGC+AGG + chr5_4:20985201-20985220 None:intergenic 20.0%
!! ACCAAAATGACTAATAATTT+GGG + chr5_4:20987282-20987301 None:intergenic 20.0%
!! ATTTCTTAATCTGTGTAAAA+TGG - chr5_4:20985707-20985726 Msa0843330:intron 20.0%
!!! GTTGACATATTGATTTTTTT+GGG + chr5_4:20987865-20987884 None:intergenic 20.0%
!!! AGTTGACATATTGATTTTTT+TGG + chr5_4:20987866-20987885 None:intergenic 20.0%
!! ATGTTATAATAGTTAGAACA+AGG + chr5_4:20987938-20987957 None:intergenic 20.0%
!! ATGCTAAAAGTTACTATTAT+AGG + chr5_4:20988074-20988093 None:intergenic 20.0%
!! TTATGAACAATAAGAGTTAA+TGG + chr5_4:20988581-20988600 None:intergenic 20.0%
!!! TTTATGTTTTGTTTCAACAA+TGG - chr5_4:20988658-20988677 Msa0843330:intron 20.0%
!! TATATATTTCTCTTATCTGT+AGG - chr5_4:20988744-20988763 Msa0843330:CDS 20.0%
!! TCAATCTTTAAATTTGAAAG+TGG - chr5_4:20989024-20989043 Msa0843330:CDS 20.0%
!! TGAAAGAAAATAATAATGCT+AGG - chr5_4:20989081-20989100 Msa0843330:five_prime_UTR 20.0%
!! GAAAGAAAATAATAATGCTA+GGG - chr5_4:20989082-20989101 Msa0843330:five_prime_UTR 20.0%
!! AAAGAAAATAATAATGCTAG+GGG - chr5_4:20989083-20989102 Msa0843330:five_prime_UTR 20.0%
!! AAGTTTAGACATTAGAATTA+TGG + chr5_4:20989464-20989483 None:intergenic 20.0%
!! AGAATAATTCTGGTGTTAAT+TGG + chr5_4:20982900-20982919 None:intergenic 25.0%
! TGAAACAGTATTTGATTGAA+CGG - chr5_4:20983348-20983367 Msa0843330:three_prime_UTR 25.0%
! ACAGCCATATTACAAATATA+AGG + chr5_4:20983542-20983561 None:intergenic 25.0%
! TTATATTTGTAATATGGCTG+TGG - chr5_4:20983541-20983560 Msa0843330:three_prime_UTR 25.0%
!!! AGTTGATTTGAAGAATCAAT+AGG - chr5_4:20983682-20983701 Msa0843330:intron 25.0%
!!! GTTGATTTGAAGAATCAATA+GGG - chr5_4:20983683-20983702 Msa0843330:intron 25.0%
!!! CACATAAATTTCTAGTAATG+TGG + chr5_4:20983893-20983912 None:intergenic 25.0%
! CACATTACTAGAAATTTATG+TGG - chr5_4:20983891-20983910 Msa0843330:CDS 25.0%
! TTTAAATGACATCAAATGCA+TGG + chr5_4:20983927-20983946 None:intergenic 25.0%
! TTCCTTACTACATAATTTAC+AGG + chr5_4:20983967-20983986 None:intergenic 25.0%
! AAGGAAAGTAAATCAAATAG+AGG - chr5_4:20983981-20984000 Msa0843330:CDS 25.0%
!!! CTATTTTGAATAACTCGTTA+CGG - chr5_4:20984327-20984346 Msa0843330:intron 25.0%
! TTATCAGAGAAATAAGTTCA+GGG + chr5_4:20984497-20984516 None:intergenic 25.0%
! TTTATCAGAGAAATAAGTTC+AGG + chr5_4:20984498-20984517 None:intergenic 25.0%
! ACAAATTTGACCAATATTCT+GGG - chr5_4:20984543-20984562 Msa0843330:intron 25.0%
! AAATACTTGAGCTTATCTAT+TGG - chr5_4:20984665-20984684 Msa0843330:intron 25.0%
! GAGCTTATGAAAATAGATTA+TGG - chr5_4:20984718-20984737 Msa0843330:intron 25.0%
! ATAGATTATGGCATGTTTAT+AGG - chr5_4:20984730-20984749 Msa0843330:intron 25.0%
!! AGCTTAAAACAAGTTGAAAT+TGG + chr5_4:20984756-20984775 None:intergenic 25.0%
!!! TAATTTTTTACTCTTCTGCT+AGG - chr5_4:20984987-20985006 Msa0843330:intron 25.0%
!!! AGGTTAAGTAGGATATTTTT+TGG - chr5_4:20985007-20985026 Msa0843330:intron 25.0%
!!! GGTTAAGTAGGATATTTTTT+GGG - chr5_4:20985008-20985027 Msa0843330:intron 25.0%
!! TACAATCTGAAATTCATTGA+TGG + chr5_4:20985234-20985253 None:intergenic 25.0%
! CTAAAATGAATAATTTGGGA+CGG + chr5_4:20985271-20985290 None:intergenic 25.0%
! AGAGAGTAATAAACAGTTTA+TGG - chr5_4:20985407-20985426 Msa0843330:intron 25.0%
! TAAACAGTTTATGGTATAGT+AGG - chr5_4:20985416-20985435 Msa0843330:intron 25.0%
! ACAATATTATCCTTCGTTAA+TGG + chr5_4:20985645-20985664 None:intergenic 25.0%
! GGTCAAAATGACTTATAATT+TGG - chr5_4:20985728-20985747 Msa0843330:intron 25.0%
! AAATGACTTATAATTTGGGA+CGG - chr5_4:20985733-20985752 Msa0843330:intron 25.0%
! ATGTTGCAATAGTTATAACA+AGG + chr5_4:20985870-20985889 None:intergenic 25.0%
! TTATCAGAGAAATATGTTCA+GGG + chr5_4:20986497-20986516 None:intergenic 25.0%
! TTTATCAGAGAAATATGTTC+AGG + chr5_4:20986498-20986517 None:intergenic 25.0%
! TTGACCAATATAATACATAC+TGG - chr5_4:20986549-20986568 Msa0843330:intron 25.0%
! TGACCAATATAATACATACT+GGG - chr5_4:20986550-20986569 Msa0843330:intron 25.0%
! GAGCTTATGTAAATAGTTTA+TGG - chr5_4:20986725-20986744 Msa0843330:intron 25.0%
!! AGCTTAAAACAAGTTGAAAT+TGG + chr5_4:20984756-20984775 None:intergenic 25.0%
!!! TAATTTTTTACTCTTCTGCT+AGG - chr5_4:20984987-20985006 Msa0843330:intron 25.0%
!!! AGGTTAAGTAGGATATTTTT+TGG - chr5_4:20985007-20985026 Msa0843330:intron 25.0%
!!! GGTTAAGTAGGATATTTTTT+GGG - chr5_4:20985008-20985027 Msa0843330:intron 25.0%
!! TACAATTTGGAATTCATTGA+TGG + chr5_4:20987233-20987252 None:intergenic 25.0%
!! GAGAGTACATTATTACAATT+TGG + chr5_4:20987246-20987265 None:intergenic 25.0%
!! TCCCAAATTATTAGTCATTT+TGG - chr5_4:20987278-20987297 Msa0843330:intron 25.0%
! GACCAAAATGACTAATAATT+TGG + chr5_4:20987283-20987302 None:intergenic 25.0%
! ACAAAATTATCCTTCATTGA+CGG - chr5_4:20987363-20987382 Msa0843330:intron 25.0%
! TAAATAGTTTACGGTATAGT+AGG - chr5_4:20987425-20987444 Msa0843330:intron 25.0%
! TGTAAAACGACGTATAATTT+GGG + chr5_4:20987538-20987557 None:intergenic 25.0%
! TTGTAAAACGACGTATAATT+TGG + chr5_4:20987539-20987558 None:intergenic 25.0%
! ACAAAATTATCCATCGTTAA+TGG + chr5_4:20987654-20987673 None:intergenic 25.0%
! GTCAAAACGACTTATAATTT+GGG - chr5_4:20987739-20987758 Msa0843330:intron 25.0%
! ATTAATATGTCAACTCAATG+AGG - chr5_4:20985832-20985851 Msa0843330:intron 25.0%
! TTAATATGTCAACTCAATGA+GGG - chr5_4:20985833-20985852 Msa0843330:intron 25.0%
!!! TTTTTTTTTACCTTTTCCTG+TGG - chr5_4:20988012-20988031 Msa0843330:intron 25.0%
!! GCTTTTGTATACATGTTAAA+TGG + chr5_4:20988372-20988391 None:intergenic 25.0%
! CAAGCATCTTTAATATTTGT+AGG + chr5_4:20988921-20988940 None:intergenic 25.0%
! CTACAAATATTAAAGATGCT+TGG - chr5_4:20988919-20988938 Msa0843330:CDS 25.0%
!! AATACACATAAAATTTGCTC+TGG - chr5_4:20988944-20988963 Msa0843330:CDS 25.0%
!! ATACACATAAAATTTGCTCT+GGG - chr5_4:20988945-20988964 Msa0843330:CDS 25.0%
!! ATTATTATTTTCTTTCAGCC+AGG + chr5_4:20989078-20989097 None:intergenic 25.0%
! AAGAAAATAATAATGCTAGG+GGG - chr5_4:20989084-20989103 Msa0843330:five_prime_UTR 25.0%
! ATAAGGTTGAAGAATAGAAA+AGG - chr5_4:20989206-20989225 Msa0843330:five_prime_UTR 25.0%
! ATACTTGTGTTCATGTTAAT+TGG - chr5_4:20989311-20989330 Msa0843330:five_prime_UTR 25.0%
!!! ATTGGTTTGGTGTATATATA+TGG - chr5_4:20989329-20989348 Msa0843330:five_prime_UTR 25.0%
! GAATTATGGACAAATCTATT+CGG + chr5_4:20989450-20989469 None:intergenic 25.0%
ATCATATGTTGTTCACCAAT+TGG + chr5_4:20982832-20982851 None:intergenic 30.0%
GGGAATAAAGAGAATAATTC+TGG + chr5_4:20982910-20982929 None:intergenic 30.0%
AACACAGTAATATACCCTTT+CGG + chr5_4:20983317-20983336 None:intergenic 30.0%
! ACTTTGATTGCGTTTTATAG+AGG - chr5_4:20983395-20983414 Msa0843330:three_prime_UTR 30.0%
ATATAAGGCTTATCTTTCAG+CGG + chr5_4:20983527-20983546 None:intergenic 30.0%
TGAAGAATCAATAGGGAAAT+TGG - chr5_4:20983690-20983709 Msa0843330:intron 30.0%
!! ATTGGTGTTTGACTTGATAT+TGG - chr5_4:20983708-20983727 Msa0843330:intron 30.0%
!! TTGGTGTTTGACTTGATATT+GGG - chr5_4:20983709-20983728 Msa0843330:intron 30.0%
ATTGGGAGGACTAATTAAAA+TGG - chr5_4:20983726-20983745 Msa0843330:intron 30.0%
GACCTGTAAATTATGTAGTA+AGG - chr5_4:20983962-20983981 Msa0843330:CDS 30.0%
ATGCATTTCATGTCAACATT+AGG - chr5_4:20984154-20984173 Msa0843330:intron 30.0%
TGCATTTCATGTCAACATTA+GGG - chr5_4:20984155-20984174 Msa0843330:intron 30.0%
CATATTCAATTTAATCCCCA+TGG - chr5_4:20984228-20984247 Msa0843330:intron 30.0%
TGACATGGTAAATGAATATG+TGG + chr5_4:20984274-20984293 None:intergenic 30.0%
CATTCAAACTAGAGTGAATA+GGG + chr5_4:20984430-20984449 None:intergenic 30.0%
TCATTCAAACTAGAGTGAAT+AGG + chr5_4:20984431-20984450 None:intergenic 30.0%
GACAAATTTGACCAATATTC+TGG - chr5_4:20984542-20984561 Msa0843330:intron 30.0%
ACAAATTAGTCCCAGAATAT+TGG + chr5_4:20984556-20984575 None:intergenic 30.0%
TTAATATCAAAGAGGAAACG+TGG + chr5_4:20984829-20984848 None:intergenic 30.0%
! TAAAAGTTCAAGTTCAAGCA+AGG + chr5_4:20985083-20985102 None:intergenic 30.0%
AAGTGACTTATAATTTGGGA+CGG + chr5_4:20985490-20985509 None:intergenic 30.0%
TCCCAAATTATAAGTCACTT+CGG - chr5_4:20985490-20985509 Msa0843330:intron 30.0%
! CTTTTCAATACCATTAACGA+AGG - chr5_4:20985632-20985651 Msa0843330:intron 30.0%
TCTCAAAGCGACTTATAATT+TGG - chr5_4:20985784-20985803 Msa0843330:intron 30.0%
CTCAAAGCGACTTATAATTT+GGG - chr5_4:20985785-20985804 Msa0843330:intron 30.0%
TAAATCACATGTGATGTCAT+GGG + chr5_4:20986006-20986025 None:intergenic 30.0%
! TTAATGAGTTGGATCGAAAT+AGG - chr5_4:20986052-20986071 Msa0843330:intron 30.0%
! TAATGAGTTGGATCGAAATA+GGG - chr5_4:20986053-20986072 Msa0843330:intron 30.0%
ATGCATTTCATGTCAACATT+AGG - chr5_4:20984154-20984173 Msa0843330:intron 30.0%
TGCATTTCATGTCAACATTA+GGG - chr5_4:20984155-20984174 Msa0843330:intron 30.0%
AGTCCCAGTATGTATTATAT+TGG + chr5_4:20986556-20986575 None:intergenic 30.0%
! TGGTTTGTGAATAAGATACT+TGG - chr5_4:20986659-20986678 Msa0843330:intron 30.0%
GGTTTGTGAATAAGATACTT+GGG - chr5_4:20986660-20986679 Msa0843330:intron 30.0%
ATAGTTTATGGCATGTCTAT+AGG - chr5_4:20986737-20986756 Msa0843330:intron 30.0%
TTAATATCAAAGAGGAAACG+TGG + chr5_4:20984829-20984848 None:intergenic 30.0%
GACTTATAATTTGGGAAGAA+GGG + chr5_4:20987495-20987514 None:intergenic 30.0%
! CTTTTCAATACCATTAACGA+TGG - chr5_4:20985632-20985651 Msa0843330:intron 30.0%
GGTCAAAACGACTTATAATT+TGG - chr5_4:20987738-20987757 Msa0843330:intron 30.0%
AAACGACTTATAATTTGGGA+CGG - chr5_4:20987743-20987762 Msa0843330:intron 30.0%
TCTCAAAGCGACTTATAATT+TGG - chr5_4:20985784-20985803 Msa0843330:intron 30.0%
CTCAAAGCGACTTATAATTT+GGG - chr5_4:20985785-20985804 Msa0843330:intron 30.0%
! GTTTTACACCTGAATGTAAT+TGG - chr5_4:20988212-20988231 Msa0843330:intron 30.0%
GTTAGAATCCAATTACATTC+AGG + chr5_4:20988223-20988242 None:intergenic 30.0%
AGTAAAAGACAACATGTATG+TGG - chr5_4:20988526-20988545 Msa0843330:intron 30.0%
! TTATACGCAAAATGTTTCTG+TGG - chr5_4:20988634-20988653 Msa0843330:intron 30.0%
!!! GTTTTAAGTTTACCGAAGAA+TGG - chr5_4:20988701-20988720 Msa0843330:intron 30.0%
! CTTTTCATCATTTAGCTATC+AGG + chr5_4:20988837-20988856 None:intergenic 30.0%
!!! GCATTGTTTTGATTGAATTG+AGG + chr5_4:20988975-20988994 None:intergenic 30.0%
TGCTTTCTATATGTTCATCA+AGG - chr5_4:20988992-20989011 Msa0843330:CDS 30.0%
TAAATTTGAAAGTGGCACAT+CGG - chr5_4:20989032-20989051 Msa0843330:CDS 30.0%
! TCTTTTAGATTTGTCCACAA+TGG - chr5_4:20989235-20989254 Msa0843330:five_prime_UTR 30.0%
! TTTGATGATCTTACAAGATG+AGG + chr5_4:20989269-20989288 None:intergenic 30.0%
TGTGTTCATGTTAATTGGTT+TGG - chr5_4:20989316-20989335 Msa0843330:five_prime_UTR 30.0%
TACAAAGAGTGAACTCTATT+TGG + chr5_4:20989362-20989381 None:intergenic 30.0%
GTTTGGATAATGAGAAGAAG+AGG + chr5_4:20982866-20982885 None:intergenic 35.0%
! ATTCTGGTGTTAATTGGTGA+CGG + chr5_4:20982894-20982913 None:intergenic 35.0%
TCTTTATTCCCACAACACAA+TGG - chr5_4:20982919-20982938 Msa0843330:three_prime_UTR 35.0%
! ATGATTTTGTGGGTCTAATG+AGG + chr5_4:20982969-20982988 None:intergenic 35.0%
! TGAAGCGGTTATGATTTTGT+GGG + chr5_4:20982979-20982998 None:intergenic 35.0%
! TTGAAGCGGTTATGATTTTG+TGG + chr5_4:20982980-20982999 None:intergenic 35.0%
! AGAAGAGAAGAGTTTGAAGT+GGG + chr5_4:20983077-20983096 None:intergenic 35.0%
AAGAAGAGAAGAGTTTGAAG+TGG + chr5_4:20983078-20983097 None:intergenic 35.0%
TTTGAGGAAGGAATCTGTTA+GGG + chr5_4:20983122-20983141 None:intergenic 35.0%
AATCGATGATGTTTCCGAAA+GGG - chr5_4:20983300-20983319 Msa0843330:three_prime_UTR 35.0%
AACAGTATTTGATTGAACGG+AGG - chr5_4:20983351-20983370 Msa0843330:three_prime_UTR 35.0%
! ATTGCGTTTTATAGAGGTAG+TGG - chr5_4:20983401-20983420 Msa0843330:three_prime_UTR 35.0%
! TATAGAGGTAGTGGTGTTAA+TGG - chr5_4:20983410-20983429 Msa0843330:intron 35.0%
CTGTGGATAAATCTCTTAGA+AGG - chr5_4:20983558-20983577 Msa0843330:three_prime_UTR 35.0%
!! AAGGCTTGATTTGCATTTGT+TGG - chr5_4:20983603-20983622 Msa0843330:three_prime_UTR 35.0%
TAACCGTAGAAGTTATGAGA+GGG - chr5_4:20984303-20984322 Msa0843330:intron 35.0%
ATTGGTCAAATTTGTCCTCA+TGG + chr5_4:20984538-20984557 None:intergenic 35.0%
!! TATTCTGGGACTAATTTGTG+TGG - chr5_4:20984557-20984576 Msa0843330:intron 35.0%
TGTGGCTAAATGCATATTCA+GGG - chr5_4:20984575-20984594 Msa0843330:intron 35.0%
!!! CAACTTGTTTTAAGCTCTCA+AGG - chr5_4:20984760-20984779 Msa0843330:intron 35.0%
!!! TTGTTTTAAGCTCTCAAGGA+TGG - chr5_4:20984764-20984783 Msa0843330:intron 35.0%
GTTGTTTATTCAAACACTCC+CGG - chr5_4:20984893-20984912 Msa0843330:intron 35.0%
TTTCACATCTATATACGCTC+CGG + chr5_4:20984915-20984934 None:intergenic 35.0%
! ACTTTTAGCACAGACAAAGT+AGG - chr5_4:20985096-20985115 Msa0843330:intron 35.0%
! CTTTTAGCACAGACAAAGTA+GGG - chr5_4:20985097-20985116 Msa0843330:intron 35.0%
! AATGAATAATTTGGGACGGA+GGG + chr5_4:20985267-20985286 None:intergenic 35.0%
! AAATGAATAATTTGGGACGG+AGG + chr5_4:20985268-20985287 None:intergenic 35.0%
CTTTCTCATACCGTTAATGA+AGG + chr5_4:20985367-20985386 None:intergenic 35.0%
CCCGAAGTGACTTATAATTT+GGG + chr5_4:20985494-20985513 None:intergenic 35.0%
CCCAAATTATAAGTCACTTC+GGG - chr5_4:20985491-20985510 Msa0843330:intron 35.0%
TCCCGAAGTGACTTATAATT+TGG + chr5_4:20985495-20985514 None:intergenic 35.0%
AAGCGACTTATAATTTGGGA+TGG - chr5_4:20985789-20985808 Msa0843330:intron 35.0%
! GACTTATAATTTGGGATGGA+GGG - chr5_4:20985793-20985812 Msa0843330:intron 35.0%
GTAAATCACATGTGATGTCA+TGG + chr5_4:20986007-20986026 None:intergenic 35.0%
ATTAGGGCTATTATCACTTC+AGG - chr5_4:20986178-20986197 Msa0843330:intron 35.0%
CATGTTCAATTTAATCCCCA+TGG - chr5_4:20986238-20986257 Msa0843330:intron 35.0%
TAACCGTAGAAGTTATGAGA+GGG - chr5_4:20984303-20984322 Msa0843330:intron 35.0%
ATTGGTCAAATTTGTCCTCA+TGG + chr5_4:20984538-20984557 None:intergenic 35.0%
TGTGGCTAAATGCATATTCA+GGG - chr5_4:20984575-20984594 Msa0843330:intron 35.0%
AGATACTTGGGCTTATCTAT+TGG - chr5_4:20986672-20986691 Msa0843330:intron 35.0%
!!! CAACTTGTTTTAAGCTCTCA+AGG - chr5_4:20984760-20984779 Msa0843330:intron 35.0%
!!! TTGTTTTAAGCTCTCAAGGA+TGG - chr5_4:20984764-20984783 Msa0843330:intron 35.0%
GTTGTTTATACAAACACTCC+CGG - chr5_4:20986900-20986919 Msa0843330:intron 35.0%
TTACACATCTATATACGCTC+CGG + chr5_4:20986922-20986941 None:intergenic 35.0%
TAAGCTAGAACTGTTAGAAG+TGG - chr5_4:20986939-20986958 Msa0843330:intron 35.0%
AAGCTAGAACTGTTAGAAGT+GGG - chr5_4:20986940-20986959 Msa0843330:intron 35.0%
! TAAACGTTCAAGTTCAAGCA+AGG + chr5_4:20987090-20987109 None:intergenic 35.0%
CGACTTATAATTTGGGAAGA+AGG + chr5_4:20987496-20987515 None:intergenic 35.0%
TCCCAAATTATAAGTCGCTT+CGG - chr5_4:20987499-20987518 Msa0843330:intron 35.0%
AAGCGACTTATAATTTGGGA+TGG - chr5_4:20985789-20985808 Msa0843330:intron 35.0%
! GACTTATAATTTGGGATGGA+GGG - chr5_4:20985793-20985812 Msa0843330:intron 35.0%
AGCATCCAAGATTAAGATTG+AGG - chr5_4:20988089-20988108 Msa0843330:intron 35.0%
GGTTACCTCAATCTTAATCT+TGG + chr5_4:20988097-20988116 None:intergenic 35.0%
TCAGGAGGAGAATATATCTT+TGG + chr5_4:20988118-20988137 None:intergenic 35.0%
TTCTCCTCCTGAAATTCTAA+TGG - chr5_4:20988126-20988145 Msa0843330:intron 35.0%
ATGCAAGCCATTAGAATTTC+AGG + chr5_4:20988136-20988155 None:intergenic 35.0%
TACTCATAGTCATCAGAACA+TGG + chr5_4:20988510-20988529 None:intergenic 35.0%
AATGGTAGCAAATATGATCG+AGG - chr5_4:20988676-20988695 Msa0843330:intron 35.0%
TGAAACCAATCTCCATTCTT+CGG + chr5_4:20988716-20988735 None:intergenic 35.0%
TCATTTACCTGTAACACAAC+AGG + chr5_4:20988777-20988796 None:intergenic 35.0%
GTACTTCATCATAAATTGCC+AGG - chr5_4:20988869-20988888 Msa0843330:CDS 35.0%
GAAAGAATGATGTCATAACC+TGG + chr5_4:20988890-20988909 None:intergenic 35.0%
!! GCTATATGAAAGGTACCTAA+GGG + chr5_4:20989153-20989172 None:intergenic 35.0%
!! TTGTACAAGAGCACCATTAA+CGG - chr5_4:20989413-20989432 Msa0843330:five_prime_UTR 35.0%
TGAGAAGAAGAGGAGTAACA+TGG + chr5_4:20982856-20982875 None:intergenic 40.0%
! GAAATTTCTGCGAGTGGTTT+TGG + chr5_4:20983020-20983039 None:intergenic 40.0%
GAAAGAGAAATTTCTGCGAG+TGG + chr5_4:20983026-20983045 None:intergenic 40.0%
! AAGAGAAGAGTTTGAAGTGG+GGG + chr5_4:20983075-20983094 None:intergenic 40.0%
! GAAGAGAAGAGTTTGAAGTG+GGG + chr5_4:20983076-20983095 None:intergenic 40.0%
! ATCTGTTAGGGTTTGGGATT+GGG + chr5_4:20983110-20983129 None:intergenic 40.0%
! AATCTGTTAGGGTTTGGGAT+TGG + chr5_4:20983111-20983130 None:intergenic 40.0%
GAAGGAATCTGTTAGGGTTT+GGG + chr5_4:20983116-20983135 None:intergenic 40.0%
GTTTGAGGAAGGAATCTGTT+AGG + chr5_4:20983123-20983142 None:intergenic 40.0%
! GAATTTACCTGGTTTGAGGA+AGG + chr5_4:20983134-20983153 None:intergenic 40.0%
! TGAGGAATTTACCTGGTTTG+AGG + chr5_4:20983138-20983157 None:intergenic 40.0%
GTGTTTGTGAGGAATTTACC+TGG + chr5_4:20983145-20983164 None:intergenic 40.0%
GAATCGATGATGTTTCCGAA+AGG - chr5_4:20983299-20983318 Msa0843330:three_prime_UTR 40.0%
!! TAATGGTGATGGTGAAGAAG+AGG - chr5_4:20983427-20983446 Msa0843330:intron 40.0%
TGAAGAAGAGGAAATGCAGT+TGG - chr5_4:20983439-20983458 Msa0843330:intron 40.0%
!! GTGTTTGACTTGATATTGGG+AGG - chr5_4:20983712-20983731 Msa0843330:intron 40.0%
TGAACATGTGATCTTCCATG+TGG - chr5_4:20983864-20983883 Msa0843330:CDS 40.0%
ATCAAATAGAGGATAGCCAG+AGG - chr5_4:20983992-20984011 Msa0843330:CDS 40.0%
AGTTCTTCTAAGTCTTCCTC+TGG + chr5_4:20984011-20984030 None:intergenic 40.0%
AACATTAGGGCTATCACATC+AGG - chr5_4:20984168-20984187 Msa0843330:intron 40.0%
CAATTTAATCCCCATGGTGT+AGG - chr5_4:20984234-20984253 Msa0843330:intron 40.0%
AACGTAAATCCTACACCATG+GGG + chr5_4:20984246-20984265 None:intergenic 40.0%
CAACGTAAATCCTACACCAT+GGG + chr5_4:20984247-20984266 None:intergenic 40.0%
TCAACGTAAATCCTACACCA+TGG + chr5_4:20984248-20984267 None:intergenic 40.0%
CGGTTAGATTGTCAATGACA+TGG + chr5_4:20984289-20984308 None:intergenic 40.0%
CTAACCGTAGAAGTTATGAG+AGG - chr5_4:20984302-20984321 Msa0843330:intron 40.0%
AGTCCCTCTCATAACTTCTA+CGG + chr5_4:20984309-20984328 None:intergenic 40.0%
GTGTGGCTAAATGCATATTC+AGG - chr5_4:20984574-20984593 Msa0843330:intron 40.0%
GTGGCTAAATGCATATTCAG+GGG - chr5_4:20984576-20984595 Msa0843330:intron 40.0%
TTCACATCTATATACGCTCC+GGG + chr5_4:20984914-20984933 None:intergenic 40.0%
AAAGCTAGAACTGCTAGAAG+TGG - chr5_4:20984932-20984951 Msa0843330:intron 40.0%
AAGCTAGAACTGCTAGAAGT+GGG - chr5_4:20984933-20984952 Msa0843330:intron 40.0%
ACTCTTCTGCTAGGTTAAGT+AGG - chr5_4:20984996-20985015 Msa0843330:intron 40.0%
! GACTTATAATTTGGGACGGA+GGG + chr5_4:20985737-20985756 None:intergenic 40.0%
! TGACTTATAATTTGGGACGG+AGG + chr5_4:20985736-20985755 None:intergenic 40.0%
! TGACTTATAATTTGGGACGG+AGG - chr5_4:20985736-20985755 Msa0843330:intron 40.0%
! GACTTATAATTTGGGACGGA+GGG - chr5_4:20985737-20985756 Msa0843330:intron 40.0%
! CGACTTATAATTTGGGATGG+AGG - chr5_4:20985792-20985811 Msa0843330:intron 40.0%
CAATTTAATCCCCATGGTGT+AGG - chr5_4:20984234-20984253 Msa0843330:intron 40.0%
CGGTTAGATTGTCAATGACA+TGG + chr5_4:20984289-20984308 None:intergenic 40.0%
CTAACCGTAGAAGTTATGAG+AGG - chr5_4:20984302-20984321 Msa0843330:intron 40.0%
AGTCCCTCTCATAACTTCTA+CGG + chr5_4:20984309-20984328 None:intergenic 40.0%
!! TAGAAGTGTCAAGAACCATG+AGG - chr5_4:20986520-20986539 Msa0843330:intron 40.0%
CATACTGGGACTTATTTGTG+TGG - chr5_4:20986564-20986583 Msa0843330:intron 40.0%
GTGTGGCTAAATGCATATTC+AGG - chr5_4:20984574-20984593 Msa0843330:intron 40.0%
GTGGCTAAATGCATATTCAG+GGG - chr5_4:20984576-20984595 Msa0843330:intron 40.0%
TCACAAACCAATTCACGTGT+AGG + chr5_4:20986649-20986668 None:intergenic 40.0%
TACACATCTATATACGCTCC+GGG + chr5_4:20986921-20986940 None:intergenic 40.0%
ACTGTTAGAAGTGGGTGAAA+AGG - chr5_4:20986948-20986967 Msa0843330:intron 40.0%
CTGTTAGAAGTGGGTGAAAA+GGG - chr5_4:20986949-20986968 Msa0843330:intron 40.0%
ACTCTTCTGCTAGGTTAAGT+AGG - chr5_4:20984996-20985015 Msa0843330:intron 40.0%
GTTTCTCATACCGTCAATGA+AGG + chr5_4:20987376-20987395 None:intergenic 40.0%
CCCGAAGCGACTTATAATTT+GGG + chr5_4:20987503-20987522 None:intergenic 40.0%
CCCAAATTATAAGTCGCTTC+GGG - chr5_4:20987500-20987519 Msa0843330:intron 40.0%
TCCCGAAGCGACTTATAATT+TGG + chr5_4:20987504-20987523 None:intergenic 40.0%
! GACTTATAATTTGGGACGGA+GGG - chr5_4:20985737-20985756 Msa0843330:intron 40.0%
! CGACTTATAATTTGGGATGG+AGG - chr5_4:20985792-20985811 Msa0843330:intron 40.0%
AGAAAGTAGACCACAGGAAA+AGG + chr5_4:20988025-20988044 None:intergenic 40.0%
ACTCAAAGAAAGTAGACCAC+AGG + chr5_4:20988031-20988050 None:intergenic 40.0%
CTTTGAGTCAATGCATGCTA+TGG - chr5_4:20988043-20988062 Msa0843330:intron 40.0%
CAAGCCATTAGAATTTCAGG+AGG + chr5_4:20988133-20988152 None:intergenic 40.0%
CATTGGATGGCATCTTCTAA+AGG - chr5_4:20988272-20988291 Msa0843330:intron 40.0%
ATTTCTCGGATGAGTTCATC+AGG - chr5_4:20988309-20988328 Msa0843330:intron 40.0%
GAACATGGCAAATCTGTTTC+TGG + chr5_4:20988495-20988514 None:intergenic 40.0%
!! ATTTTGCGTATAAGAGCGTG+TGG + chr5_4:20988627-20988646 None:intergenic 40.0%
GTTTACCGAAGAATGGAGAT+TGG - chr5_4:20988708-20988727 Msa0843330:intron 40.0%
!! GAAGAATGGAGATTGGTTTC+AGG - chr5_4:20988715-20988734 Msa0843330:intron 40.0%
AAAGAGACCTGTTGTGTTAC+AGG - chr5_4:20988767-20988786 Msa0843330:CDS 40.0%
CTATTGAACCGTACTAATCC+TGG - chr5_4:20989057-20989076 Msa0843330:exon 40.0%
! TCTTTCAGCCAGGATTAGTA+CGG + chr5_4:20989068-20989087 None:intergenic 40.0%
!! GGCTATATGAAAGGTACCTA+AGG + chr5_4:20989154-20989173 None:intergenic 40.0%
GTTTACTTCTACCACACCTT+CGG + chr5_4:20989175-20989194 None:intergenic 40.0%
GTGTGGTAGAAGTAAACCAA+GGG - chr5_4:20989178-20989197 Msa0843330:five_prime_UTR 40.0%
GTAAACCAAGGGTGATGATA+AGG - chr5_4:20989189-20989208 Msa0843330:five_prime_UTR 40.0%
TTCAACCTTATCATCACCCT+TGG + chr5_4:20989197-20989216 None:intergenic 40.0%
! AGATTTGTCCACAATGGACT+TGG - chr5_4:20989241-20989260 Msa0843330:five_prime_UTR 40.0%
! GGAAGTTTTCCATCCGTTAA+TGG + chr5_4:20989429-20989448 None:intergenic 40.0%
TTGGAACTAGTGCTCTGGTA+AGG + chr5_4:20982813-20982832 None:intergenic 45.0%
! ACCAGAGCACTAGTTCCAAT+TGG - chr5_4:20982814-20982833 Msa0843330:three_prime_UTR 45.0%
ACCAATTGGAACTAGTGCTC+TGG + chr5_4:20982818-20982837 None:intergenic 45.0%
GAAAGAGAGTGAAAGAGCTG+TGG + chr5_4:20982945-20982964 None:intergenic 45.0%
!! TTTTGGTTGTGGTGGTGATG+AGG + chr5_4:20983003-20983022 None:intergenic 45.0%
! AGAGAAGAGTTTGAAGTGGG+GGG + chr5_4:20983074-20983093 None:intergenic 45.0%
GGAAGGAATCTGTTAGGGTT+TGG + chr5_4:20983117-20983136 None:intergenic 45.0%
ACAGATTCCTTCCTCAAACC+AGG - chr5_4:20983124-20983143 Msa0843330:three_prime_UTR 45.0%
CGCTATTGTATGCTTGCTTG+CGG - chr5_4:20983265-20983284 Msa0843330:three_prime_UTR 45.0%
GCAATCAAAGTCGCCATATG+CGG + chr5_4:20983386-20983405 None:intergenic 45.0%
! GGTAGTGGTGTTAATGGTGA+TGG - chr5_4:20983416-20983435 Msa0843330:intron 45.0%
TAATTCTACTCTTCCGTCGC+CGG - chr5_4:20983499-20983518 Msa0843330:intron 45.0%
CTAGTAATGTGGAGTCCACA+TGG + chr5_4:20983882-20983901 None:intergenic 45.0%
AACAACGGCAATCGAGTCTA+GGG + chr5_4:20984128-20984147 None:intergenic 45.0%
TAACAACGGCAATCGAGTCT+AGG + chr5_4:20984129-20984148 None:intergenic 45.0%
!! TAGGAGTGTCAAGAACCATG+AGG - chr5_4:20984520-20984539 Msa0843330:intron 45.0%
TCACAAACCAATTCACGTGC+AGG + chr5_4:20984642-20984661 None:intergenic 45.0%
ACTGCTAGAAGTGGGTGAAA+AGG - chr5_4:20984941-20984960 Msa0843330:intron 45.0%
CTGCTAGAAGTGGGTGAAAA+GGG - chr5_4:20984942-20984961 Msa0843330:intron 45.0%
! GGACGGAGGGAGTATAATTT+GGG - chr5_4:20985750-20985769 Msa0843330:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5_4:20986122-20986141 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5_4:20986123-20986142 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG + chr5_4:20986124-20986143 None:intergenic 45.0%
CACGTAAATCCTACACCATG+GGG + chr5_4:20986256-20986275 None:intergenic 45.0%
CCACGTAAATCCTACACCAT+GGG + chr5_4:20986257-20986276 None:intergenic 45.0%
TCCACGTAAATCCTACACCA+TGG + chr5_4:20986258-20986277 None:intergenic 45.0%
GCTCTCAACACACTCATAAG+TGG + chr5_4:20986709-20986728 None:intergenic 45.0%
ACGTTTAGCACAGACAGAGT+AGG - chr5_4:20987103-20987122 Msa0843330:intron 45.0%
CGTTTAGCACAGACAGAGTA+GGG - chr5_4:20987104-20987123 Msa0843330:intron 45.0%
! CGACTTATAATTTGGGACGG+AGG - chr5_4:20987746-20987765 Msa0843330:intron 45.0%
! GGACGGAGGGAGTATAATTT+GGG - chr5_4:20985750-20985769 Msa0843330:intron 45.0%
!! TTCTAAGAGTGTCTCCCTTC+AGG - chr5_4:20988244-20988263 Msa0843330:intron 45.0%
! CAAGCGAGGAACTGATTTCT+CGG - chr5_4:20988295-20988314 Msa0843330:intron 45.0%
! TCTGGAGGCATACTTAAGAG+AGG + chr5_4:20988477-20988496 None:intergenic 45.0%
!! CATGGCAAATCTGTTTCTGG+AGG + chr5_4:20988492-20988511 None:intergenic 45.0%
TGTCACAGTCTCTTTCCCTT+AGG - chr5_4:20989135-20989154 Msa0843330:five_prime_UTR 45.0%
GGTACCTTTCATATAGCCGA+AGG - chr5_4:20989156-20989175 Msa0843330:five_prime_UTR 45.0%
CACACCTTCGGCTATATGAA+AGG + chr5_4:20989163-20989182 None:intergenic 45.0%
CTTTCATATAGCCGAAGGTG+TGG - chr5_4:20989161-20989180 Msa0843330:five_prime_UTR 45.0%
GGTGTGGTAGAAGTAAACCA+AGG - chr5_4:20989177-20989196 Msa0843330:five_prime_UTR 45.0%
ATGAGGAACCAAGTCCATTG+TGG + chr5_4:20989252-20989271 None:intergenic 45.0%
!! ACAAGAGCACCATTAACGGA+TGG - chr5_4:20989417-20989436 Msa0843330:five_prime_UTR 45.0%
!! AATTGGTGACGGTGGTGGTT+TGG + chr5_4:20982883-20982902 None:intergenic 50.0%
!! GTGTTAATTGGTGACGGTGG+TGG + chr5_4:20982888-20982907 None:intergenic 50.0%
!! CTGGTGTTAATTGGTGACGG+TGG + chr5_4:20982891-20982910 None:intergenic 50.0%
AGCTGTGGCCATTGTGTTGT+GGG + chr5_4:20982930-20982949 None:intergenic 50.0%
! TGGTGGTGATGAGGTTGAAG+CGG + chr5_4:20982994-20983013 None:intergenic 50.0%
!!! TCTGCGAGTGGTTTTGGTTG+TGG + chr5_4:20983014-20983033 None:intergenic 50.0%
!! GGTTTGTTAAGGGGAAGTGG+GGG + chr5_4:20983052-20983071 None:intergenic 50.0%
!! GGGTTTGTTAAGGGGAAGTG+GGG + chr5_4:20983053-20983072 None:intergenic 50.0%
!! GGGGTTTGTTAAGGGGAAGT+GGG + chr5_4:20983054-20983073 None:intergenic 50.0%
!! AAGTGGGGGGGTTTGTTAAG+GGG + chr5_4:20983061-20983080 None:intergenic 50.0%
!! GAAGTGGGGGGGTTTGTTAA+GGG + chr5_4:20983062-20983081 None:intergenic 50.0%
!! TGAAGTGGGGGGGTTTGTTA+AGG + chr5_4:20983063-20983082 None:intergenic 50.0%
! GAGAAGAGTTTGAAGTGGGG+GGG + chr5_4:20983073-20983092 None:intergenic 50.0%
!! TGGTGAGTTCGGTGTTTGTG+AGG + chr5_4:20983156-20983175 None:intergenic 50.0%
TGTAGAGGTAAGTGGAGAGG+TGG + chr5_4:20983186-20983205 None:intergenic 50.0%
!! GTAGTGGGTGTAGAGGTAAG+TGG + chr5_4:20983194-20983213 None:intergenic 50.0%
!! TTTGAGGGTAGTGGGTGTAG+AGG + chr5_4:20983201-20983220 None:intergenic 50.0%
ACACCCACTACCCTCAAATC+CGG - chr5_4:20983203-20983222 Msa0843330:three_prime_UTR 50.0%
ACGCATTACTCGAACCCAGA+CGG + chr5_4:20983231-20983250 None:intergenic 50.0%
GAGGAGTTTGATGCCGCATA+TGG - chr5_4:20983370-20983389 Msa0843330:three_prime_UTR 50.0%
GAAGAGGAAATGCAGTTGGC+TGG - chr5_4:20983443-20983462 Msa0843330:intron 50.0%
GGCTTATCTTTCAGCGGATC+CGG + chr5_4:20983521-20983540 None:intergenic 50.0%
GCTCTCAACACACTCACAAG+TGG + chr5_4:20984702-20984721 None:intergenic 50.0%
! GGGACGGAGGGAGTATAATT+TGG - chr5_4:20985749-20985768 Msa0843330:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_4:20986118-20986137 None:intergenic 50.0%
CCCATGGTGTAGGATTTACG+TGG - chr5_4:20984244-20984263 Msa0843330:intron 50.0%
GGTTGTGCCTACACGTGAAT+TGG - chr5_4:20986639-20986658 Msa0843330:intron 50.0%
! GGGACGGAGGGAGTATAATT+TGG - chr5_4:20985749-20985768 Msa0843330:intron 50.0%
!! TAAGAGTGTCTCCCTTCAGG+AGG - chr5_4:20988247-20988266 Msa0843330:intron 50.0%
!! AAGAGTGTCTCCCTTCAGGA+GGG - chr5_4:20988248-20988267 Msa0843330:intron 50.0%
! GCATCTTCTAAAGGCAAGCG+AGG - chr5_4:20988281-20988300 Msa0843330:intron 50.0%
GAGCTGTGGCCATTGTGTTG+TGG + chr5_4:20982931-20982950 None:intergenic 55.0%
!!! GCGAGTGGTTTTGGTTGTGG+TGG + chr5_4:20983011-20983030 None:intergenic 55.0%
!! GGGGGTTTGTTAAGGGGAAG+TGG + chr5_4:20983055-20983074 None:intergenic 55.0%
!! GTAAGTGGAGAGGTGGTGGA+GGG + chr5_4:20983179-20983198 None:intergenic 55.0%
AGAGGTAAGTGGAGAGGTGG+TGG + chr5_4:20983183-20983202 None:intergenic 55.0%
GGGTGTAGAGGTAAGTGGAG+AGG + chr5_4:20983189-20983208 None:intergenic 55.0%
GTGCCGGATTTGAGGGTAGT+GGG + chr5_4:20983209-20983228 None:intergenic 55.0%
! ACGGCAATCGAGTCTAGGGT+TGG + chr5_4:20984124-20984143 None:intergenic 55.0%
GATTGCGCCTGCACGTGAAT+TGG - chr5_4:20984632-20984651 Msa0843330:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_4:20986109-20986128 Msa0843330:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_4:20986110-20986129 Msa0843330:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_4:20986116-20986135 Msa0843330:intron 55.0%
! AGAGTGTCTCCCTTCAGGAG+GGG - chr5_4:20988249-20988268 Msa0843330:intron 55.0%
CATCCAATGCCCCTCCTGAA+GGG + chr5_4:20988261-20988280 None:intergenic 55.0%
TGCGTCTCTGCAACAACAGC+AGG + chr5_4:20988431-20988450 None:intergenic 55.0%
! GTGGTGGAGGGTGGTGAGTT+CGG + chr5_4:20983167-20983186 None:intergenic 60.0%
! GGTAAGTGGAGAGGTGGTGG+AGG + chr5_4:20983180-20983199 None:intergenic 60.0%
! GGTGCCGGATTTGAGGGTAG+TGG + chr5_4:20983210-20983229 None:intergenic 60.0%
! CCAGACGGTGCCGGATTTGA+GGG + chr5_4:20983216-20983235 None:intergenic 60.0%
CCTCAAATCCGGCACCGTCT+GGG - chr5_4:20983214-20983233 Msa0843330:three_prime_UTR 60.0%
TACTCGAACCCAGACGGTGC+CGG + chr5_4:20983225-20983244 None:intergenic 60.0%
TCTTTCAGCGGATCCGGCGA+CGG + chr5_4:20983515-20983534 None:intergenic 60.0%
! TCTCCCTTCAGGAGGGGCAT+TGG - chr5_4:20988255-20988274 Msa0843330:intron 60.0%
CCATCCAATGCCCCTCCTGA+AGG + chr5_4:20988262-20988281 None:intergenic 60.0%
!! CCTTCAGGAGGGGCATTGGA+TGG - chr5_4:20988259-20988278 Msa0843330:intron 60.0%
!! AGTGGAGAGGTGGTGGAGGG+TGG + chr5_4:20983176-20983195 None:intergenic 65.0%
CCCTCAAATCCGGCACCGTC+TGG - chr5_4:20983213-20983232 Msa0843330:three_prime_UTR 65.0%
! CCCAGACGGTGCCGGATTTG+AGG + chr5_4:20983217-20983236 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 20982805 20989509 20982805 ID=Msa0843330;Name=Msa0843330
chr5_4 mRNA 20982805 20989509 20982805 ID=Msa0843330-mRNA-1;Parent=Msa0843330;Name=Msa0843330-mRNA-1;_AED=0.23;_eAED=0.23;_QI=440|1|1|1|0.33|0.25|4|762|199
chr5_4 exon 20982805 20983423 20982805 ID=Msa0843330-mRNA-1:exon:8689;Parent=Msa0843330-mRNA-1
chr5_4 exon 20983526 20983630 20983526 ID=Msa0843330-mRNA-1:exon:8688;Parent=Msa0843330-mRNA-1
chr5_4 exon 20983746 20984048 20983746 ID=Msa0843330-mRNA-1:exon:8687;Parent=Msa0843330-mRNA-1
chr5_4 exon 20988735 20989509 20988735 ID=Msa0843330-mRNA-1:exon:8686;Parent=Msa0843330-mRNA-1
chr5_4 five_prime_UTR 20989070 20989509 20989070 ID=Msa0843330-mRNA-1:five_prime_utr;Parent=Msa0843330-mRNA-1
chr5_4 CDS 20988735 20989069 20988735 ID=Msa0843330-mRNA-1:cds;Parent=Msa0843330-mRNA-1
chr5_4 CDS 20983784 20984048 20983784 ID=Msa0843330-mRNA-1:cds;Parent=Msa0843330-mRNA-1
chr5_4 three_prime_UTR 20983746 20983783 20983746 ID=Msa0843330-mRNA-1:three_prime_utr;Parent=Msa0843330-mRNA-1
chr5_4 three_prime_UTR 20983526 20983630 20983526 ID=Msa0843330-mRNA-1:three_prime_utr;Parent=Msa0843330-mRNA-1
chr5_4 three_prime_UTR 20982805 20983423 20982805 ID=Msa0843330-mRNA-1:three_prime_utr;Parent=Msa0843330-mRNA-1
Gene Sequence

>Msa0843330

ATGCGTGACAGCGAAGTAGACGCTATTGTATGCTTGCTTGCGGATTCTTTCGCTGAATCGATGATGTTTCCGAAAGGGTATATTACTGTGTTGAGATTTCTTGTGAAACAGTATTTGATTGAACGGAGGAGTTTGATGCCGCATATGGCGACTTTGATTGCGTTTTATAGAGGTAGTGGTGTTAATGGTGATGGTGAAGAAGAGGAAATGCAGTTGGCTGGTACTGTTGAGATTTCTTTTAATGTTTATGGTGCTAATTCTACTCTTCCGTCGCCGGATCCGCTGAAAGATAAGCCTTATATTTGTAATATGGCTGTGGATAAATCTCTTAGAAGGAGGGGCATTGGATGGCATCTTCTAAAGGCAAGCGAGGAACTGATTTCTCGGATGAGTTCATCAGGAGAAGTTTACTTGCATTGTAGAATGATTGATGAAGCTCCATTTAACATGTATACAAAAGCTGATTACAAAATTGTAACGACAGATAGTATTTTAGTCCTGCTGTTGTTGCAGAGACGCAAACACTTGATGTGCAAGAAACTTCCTCTCTTAAGTATGCCTCCAGAAACAGATTTGCCATGTTCTGATGACTATGAGTAA
Protein sequence

>Msa0843330

MRDSEVDAIVCLLADSFAESMMFPKGYITVLRFLVKQYLIERRSLMPHMATLIAFYRGSGVNGDGEEEEMQLAGTVEISFNVYGANSTLPSPDPLKDKPYICNMAVDKSLRRRGIGWHLLKASEELISRMSSSGEVYLHCRMIDEAPFNMYTKADYKIVTTDSILVLLLLQRRKHLMCKKLPLLSMPPETDLPCSDDYE*