AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0847430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847430 MtrunA17_Chr1g0160961 96.659 419 14 0 1 419 1171 1589 0.0 837
Msa0847430 MtrunA17_Chr5g0419891 96.338 355 13 0 1 355 1047 1401 0.0 712
Msa0847430 MtrunA17_Chr5g0419881 92.308 65 5 0 355 419 11 75 2.07e-34 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847430 AT4G38440.1 47.761 402 179 8 3 402 1076 1448 1.33e-114 366

Find 258 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTGAACAATTGCGTTTC+TGG 0.041075 5_4:-29417741 Msa0847430:five_prime_UTR
CCGAAATAGCTTCTTTATTT+TGG 0.085921 5_4:+29415900 None:intergenic
TCTTGTTGCAATCCACTTTA+TGG 0.090064 5_4:+29417438 None:intergenic
GTGCCCATGGTGGAGGATTT+TGG 0.186737 5_4:-29416779 Msa0847430:five_prime_UTR
CACTGTTGCGAAAATAAATT+TGG 0.191453 5_4:+29417541 None:intergenic
TCGAACAATTTATATACTTC+TGG 0.217780 5_4:+29417409 None:intergenic
GACTTGAGTTGATCAATTAT+TGG 0.225967 5_4:-29417198 Msa0847430:five_prime_UTR
GCATCAACCTGTTGTCTAAA+TGG 0.229364 5_4:-29417059 Msa0847430:five_prime_UTR
TCCAAACGCGCATCAGCTTT+TGG 0.234899 5_4:+29416352 None:intergenic
GAAGCCATTTGTTCAGTTTC+GGG 0.236120 5_4:+29416673 None:intergenic
TCCTAGACTTCGTTATCTTT+TGG 0.252444 5_4:-29418686 Msa0847430:five_prime_UTR
CAGTCTTGGCAGACCTTATC+AGG 0.253601 5_4:+29417006 None:intergenic
GAGGACCAGCACGCTTAGTA+TGG 0.267646 5_4:+29416200 None:intergenic
CCAATCTTTGGGACAAATTC+CGG 0.268824 5_4:+29417220 None:intergenic
GGATGTTATCATCTCATTTC+AGG 0.270008 5_4:-29416447 Msa0847430:CDS
CCAAAATAAAGAAGCTATTT+CGG 0.281273 5_4:-29415900 Msa0847430:CDS
CAGCTTTCTTCCATATCTTA+TGG 0.281427 5_4:-29415794 Msa0847430:CDS
CTGTAGGATATAATTTAAAT+TGG 0.285614 5_4:-29413370 Msa0847430:three_prime_UTR
GTAGGTGTTTGGTTGAATTA+AGG 0.291354 5_4:-29416911 Msa0847430:five_prime_UTR
GTTGATCAATTATTGGCATT+TGG 0.297156 5_4:-29417191 Msa0847430:five_prime_UTR
ATCAACTCAAGTCCAATCTT+TGG 0.303377 5_4:+29417208 None:intergenic
TGAAGCCATTTGTTCAGTTT+CGG 0.309298 5_4:+29416672 None:intergenic
AACACAAGGCAGGGAATATC+TGG 0.309518 5_4:+29417678 None:intergenic
TCCATAGAATCCTCGCTAAA+AGG 0.310999 5_4:+29418799 None:intergenic
TTGATCAATTATTGGCATTT+GGG 0.311837 5_4:-29417190 Msa0847430:five_prime_UTR
TAGGGAGGCATATCTTGTTT+TGG 0.319710 5_4:-29417584 Msa0847430:five_prime_UTR
CATCTCATTTCAGGAGTAGA+TGG 0.328804 5_4:-29416438 Msa0847430:CDS
CCATGTTGGAATGGAAATAC+TGG 0.329505 5_4:-29415999 Msa0847430:CDS
CCGGAATTTGTCCCAAAGAT+TGG 0.331262 5_4:-29417220 Msa0847430:five_prime_UTR
TGCTGCGCAACAGGCTTGTT+AGG 0.333591 5_4:-29414413 Msa0847430:CDS
ACGAATCTACTTGCATATCT+AGG 0.336642 5_4:-29417603 Msa0847430:five_prime_UTR
ACAAAATCCGGAAGAGATTC+TGG 0.336943 5_4:-29417148 Msa0847430:five_prime_UTR
CTAAAAGGTTGAATGTTAGA+AGG 0.339422 5_4:+29418814 None:intergenic
AACTGCAGGACCTGCGGATA+TGG 0.341254 5_4:-29416612 Msa0847430:five_prime_UTR
GACAGATCCTACTGCAGCTT+TGG 0.348406 5_4:-29418208 Msa0847430:five_prime_UTR
GAAGCTTTACAGGATCTTTA+CGG 0.351485 5_4:-29415950 Msa0847430:CDS
TCCTTGCTGTAATTCTTTGA+TGG 0.352788 5_4:-29416290 Msa0847430:CDS
TGGGCATGTGCCATGGCTTC+CGG 0.356360 5_4:-29417239 Msa0847430:five_prime_UTR
CTCTGCATCATCAGTGGACT+CGG 0.358178 5_4:+29417501 None:intergenic
GTATGGGGAATTGTTGAGAT+TGG 0.358295 5_4:+29416217 None:intergenic
CAGTAGTTCTTCTGGCGTTC+AGG 0.358413 5_4:-29416380 Msa0847430:CDS
AGGCATAGTTAGTAGGTGTT+TGG 0.363279 5_4:-29416922 Msa0847430:five_prime_UTR
TGTTTAGAGTTTATAAAGAA+TGG 0.364320 5_4:-29417865 Msa0847430:five_prime_UTR
TTCTCTCAAATGTTACTGAT+TGG 0.367479 5_4:-29413450 Msa0847430:three_prime_UTR
CAAGATGATGTATTTGTTGC+TGG 0.368171 5_4:-29418748 Msa0847430:five_prime_UTR
GGAAAAGGTCTTGGCTCGTT+TGG 0.370292 5_4:-29417899 Msa0847430:intron
AAATAAATTTGGAAGTCTTC+CGG 0.371881 5_4:+29417552 None:intergenic
CCACTGATGATGCAGAGTTC+TGG 0.374506 5_4:-29417495 Msa0847430:five_prime_UTR
TGGAGGGTCTGCATTCGATA+TGG 0.374998 5_4:-29417721 Msa0847430:five_prime_UTR
AGGCCAACACCACAGAATTA+TGG 0.377404 5_4:+29419101 None:intergenic
AGGATCAGTTTCGTATACTA+TGG 0.379995 5_4:-29414490 Msa0847430:CDS
GGGTTTCTGATGCCCTTGAC+AGG 0.383187 5_4:-29414524 Msa0847430:CDS
TCCAAAAGCTGATGCGCGTT+TGG 0.384736 5_4:-29416353 Msa0847430:CDS
AATCAGATCGCCATAAGATA+TGG 0.385830 5_4:+29415784 None:intergenic
AGCAGACCAGATATTTCTCT+TGG 0.387017 5_4:-29418874 Msa0847430:five_prime_UTR
TCCAGGCGTGGGAGTTGGAT+GGG 0.388368 5_4:-29416802 Msa0847430:five_prime_UTR
TAGATGTTGATTGCTTGTTA+TGG 0.388706 5_4:+29413691 None:intergenic
AATTAATTGTTTACCTCTGC+AGG 0.389663 5_4:+29415614 None:intergenic
ATTGACGACTGGCTGAAGTT+AGG 0.393973 5_4:-29417796 Msa0847430:five_prime_UTR
GTTCTTGAAAAGGTGACATT+GGG 0.396554 5_4:-29417289 Msa0847430:five_prime_UTR
ATAAGTTATTGCTGCGCAAC+AGG 0.396970 5_4:-29414422 Msa0847430:CDS
TCTGGTCTGCTCCTGAAAAC+GGG 0.397702 5_4:+29418886 None:intergenic
AATGCCAGTTCCTTGAAAAC+TGG 0.399074 5_4:+29416081 None:intergenic
AACAAAGAAAAGTCCACATT+TGG 0.399535 5_4:+29416123 None:intergenic
ATCAGCCTACAGGAAGCTAA+TGG 0.401122 5_4:-29417259 Msa0847430:five_prime_UTR
GTGGATGGCAGTAGTTCTTC+TGG 0.401345 5_4:-29416388 Msa0847430:CDS
AGATGTTGATTGCTTGTTAT+GGG 0.402328 5_4:+29413692 None:intergenic
CTCCAGGCGTGGGAGTTGGA+TGG 0.405828 5_4:-29416803 Msa0847430:five_prime_UTR
ATTTCTCTTGGATTCCTTCA+AGG 0.406210 5_4:-29418862 Msa0847430:five_prime_UTR
TCAACTCAAGTCCAATCTTT+GGG 0.407240 5_4:+29417209 None:intergenic
AAGGCTTTACCCTCCTGTTA+AGG 0.409134 5_4:+29416510 None:intergenic
TTACGGTGAGCTTCTTGATA+AGG 0.409214 5_4:-29415933 Msa0847430:CDS
CCCCATCCAACTCCCACGCC+TGG 0.409368 5_4:+29416801 None:intergenic
GTCAATGATACATGCTGAAT+AGG 0.412475 5_4:+29416052 None:intergenic
GGATGGGGTGCCCATGGTGG+AGG 0.412884 5_4:-29416786 Msa0847430:five_prime_UTR
TTCATCACCAGAATCTCTTC+CGG 0.413316 5_4:+29417141 None:intergenic
CAACGGGTTAACACTGCATT+GGG 0.415007 5_4:-29416644 Msa0847430:five_prime_UTR
TTGACGACTGGCTGAAGTTA+GGG 0.419363 5_4:-29417795 Msa0847430:five_prime_UTR
GGAAATACTGGAACAAGATC+AGG 0.420556 5_4:-29415987 Msa0847430:CDS
ATCTGGTCTGCTCCTGAAAA+CGG 0.420857 5_4:+29418885 None:intergenic
GTTGGATGGGGTGCCCATGG+TGG 0.423434 5_4:-29416789 Msa0847430:five_prime_UTR
CTATACTGATTGCCATAGTA+AGG 0.424241 5_4:-29418170 Msa0847430:five_prime_UTR
CTAAAATTGATAACCTGATA+AGG 0.424247 5_4:-29417019 Msa0847430:five_prime_UTR
TGAAGGTGAATGCCTTACTA+TGG 0.428516 5_4:+29418158 None:intergenic
TATTCCATGATTGAATGGTT+TGG 0.433629 5_4:-29413410 Msa0847430:three_prime_UTR
AAAATCTGTAAAACTCTTGA+AGG 0.434792 5_4:-29418043 Msa0847430:intron
ATGCAGTCCATTGAAATATT+CGG 0.438853 5_4:-29416840 Msa0847430:five_prime_UTR
TAATTCTTTGATGGTAGAAT+GGG 0.439022 5_4:-29416281 Msa0847430:CDS
GCAGGATAATGAAGAGATCT+TGG 0.439515 5_4:-29414565 Msa0847430:intron
GGAGTAGATGGTTATCTGTA+AGG 0.440979 5_4:-29416426 Msa0847430:CDS
GTAATTCTTTGATGGTAGAA+TGG 0.442924 5_4:-29416282 Msa0847430:CDS
TCGACAGAACTTACCACTTC+CGG 0.443798 5_4:-29416257 Msa0847430:CDS
CCAGCTCCAGGCGTGGGAGT+TGG 0.445150 5_4:-29416807 Msa0847430:five_prime_UTR
AAGAGAGCTGGTTGGAGTCC+AGG 0.447896 5_4:-29413635 Msa0847430:CDS
AATCTAGCATCTGTTTGAAC+AGG 0.453713 5_4:+29416741 None:intergenic
GATTATTCCATTTAGACAAC+AGG 0.455293 5_4:+29417052 None:intergenic
TCTCGGCAACTCCTTTGCTA+TGG 0.457116 5_4:-29417345 Msa0847430:five_prime_UTR
AAATGGCTTCACCATGCAAC+GGG 0.458051 5_4:-29416660 Msa0847430:five_prime_UTR
GTTGCCTCTGTGACAAAATC+CGG 0.458610 5_4:-29417160 Msa0847430:five_prime_UTR
TGCTCCCGAAACTGAACAAA+TGG 0.459255 5_4:-29416677 Msa0847430:five_prime_UTR
ATATAAATTGTTCGAAGGAC+AGG 0.459842 5_4:-29417401 Msa0847430:five_prime_UTR
TTATACAAGCATGTAAATAT+AGG 0.464338 5_4:-29413517 Msa0847430:three_prime_UTR
TTCTGGTCTTGGAGCTATGT+TGG 0.465540 5_4:-29417478 Msa0847430:five_prime_UTR
CTGATAAGGTCTGCCAAGAC+TGG 0.468230 5_4:-29417005 Msa0847430:five_prime_UTR
GATTCATTTGAGGCAGAAGA+AGG 0.468321 5_4:-29417101 Msa0847430:five_prime_UTR
AGGTAAAAGTGGACCGGAAG+TGG 0.468918 5_4:+29416244 None:intergenic
TTCCTTTGTCCATTGACGAC+TGG 0.474001 5_4:-29417807 Msa0847430:five_prime_UTR
GGAGTTGGATGGGGTGCCCA+TGG 0.475124 5_4:-29416792 Msa0847430:five_prime_UTR
GTTTAGAGTTTATAAAGAAT+GGG 0.477311 5_4:-29417864 Msa0847430:five_prime_UTR
CCAGGCGTGGGAGTTGGATG+GGG 0.477670 5_4:-29416801 Msa0847430:five_prime_UTR
CCAACTCCCACGCCTGGAGC+TGG 0.477679 5_4:+29416807 None:intergenic
TAACTTCAGCCAGTCGTCAA+TGG 0.478921 5_4:+29417798 None:intergenic
TTCGCACTTCAGCACTGCAT+TGG 0.481328 5_4:+29418131 None:intergenic
TACTGGAACAAGATCAGGGC+AGG 0.485197 5_4:-29415982 Msa0847430:CDS
TAACAGGAGGGTAAAGCCTT+GGG 0.485909 5_4:-29416507 Msa0847430:five_prime_UTR
CTCGGCAACTCCTTTGCTAT+GGG 0.487230 5_4:-29417344 Msa0847430:five_prime_UTR
AGGAATCCAAGAGAAATATC+TGG 0.493475 5_4:+29418868 None:intergenic
TTTCTCTTGGATTCCTTCAA+GGG 0.494686 5_4:-29418861 Msa0847430:five_prime_UTR
GGAGGACCAGCTCCAGGCGT+GGG 0.496549 5_4:-29416813 Msa0847430:five_prime_UTR
GGCAGAGGAGGACCAGCTCC+AGG 0.497407 5_4:-29416819 Msa0847430:five_prime_UTR
AGGACCAGCACGCTTAGTAT+GGG 0.497566 5_4:+29416201 None:intergenic
AGTTCTTGAAAAGGTGACAT+TGG 0.499894 5_4:-29417290 Msa0847430:five_prime_UTR
GCCACTTCAAGCAAATTAGC+GGG 0.500539 5_4:+29416145 None:intergenic
TCAGCCTACAGGAAGCTAAT+GGG 0.500777 5_4:-29417258 Msa0847430:five_prime_UTR
GCAACGGGTTAACACTGCAT+TGG 0.502868 5_4:-29416645 Msa0847430:five_prime_UTR
TCCTCTGCCGAATATTTCAA+TGG 0.504326 5_4:+29416833 None:intergenic
TTATCTGTCAATTTCCATGT+TGG 0.504555 5_4:-29416013 Msa0847430:CDS
ATGATGCAGAGTTCTGGTCT+TGG 0.506347 5_4:-29417489 Msa0847430:five_prime_UTR
TACGGCCGGTCTAGTTCGCA+TGG 0.508939 5_4:-29418716 Msa0847430:five_prime_UTR
AGGGGATGTTGAAATGTCAT+TGG 0.509321 5_4:-29417081 Msa0847430:five_prime_UTR
TCCCGCTAATTTGCTTGAAG+TGG 0.510230 5_4:-29416146 Msa0847430:CDS
TTGGGATTATGTTTAACTGC+AGG 0.510373 5_4:-29416626 Msa0847430:five_prime_UTR
CTTGACAGGGCTGAGATTCG+AGG 0.511853 5_4:-29414510 Msa0847430:CDS
GGAGGCTTATGCTAAGTCAT+GGG 0.511995 5_4:-29414544 Msa0847430:CDS
CGAATCTACTTGCATATCTA+GGG 0.514208 5_4:-29417602 Msa0847430:five_prime_UTR
TTAACAGGAGGGTAAAGCCT+TGG 0.519287 5_4:-29416508 Msa0847430:five_prime_UTR
TTGTTCGAAGGACAGGAAGA+AGG 0.521686 5_4:-29417394 Msa0847430:five_prime_UTR
CTCAATCAATACTTTCATCC+TGG 0.521759 5_4:+29413617 None:intergenic
TGAAGGAACTGATTCATTTG+AGG 0.521856 5_4:-29417111 Msa0847430:five_prime_UTR
TGTCAATTTCCATGTTGGAA+TGG 0.523442 5_4:-29416008 Msa0847430:CDS
CTTCACTTTAAGAGATCTCT+CGG 0.528806 5_4:-29417362 Msa0847430:five_prime_UTR
CTCGAATCTCAGCCCTGTCA+AGG 0.528934 5_4:+29414511 None:intergenic
TAGACTTTGTTCTGTGCCTG+TGG 0.529478 5_4:+29416971 None:intergenic
ATTGCTTGTTATGGGAAATG+AGG 0.531440 5_4:+29413700 None:intergenic
TGGAGGCTTATGCTAAGTCA+TGG 0.533336 5_4:-29414545 Msa0847430:CDS
GGTTTCTGATGCCCTTGACA+GGG 0.533459 5_4:-29414523 Msa0847430:CDS
CCAGAAACGCAATTGTTCAA+TGG 0.535253 5_4:+29417741 None:intergenic
GAACAAAGTCTATCGAAAGA+AGG 0.535260 5_4:-29416960 Msa0847430:five_prime_UTR
ACGGCCGGTCTAGTTCGCAT+GGG 0.536507 5_4:-29418715 Msa0847430:five_prime_UTR
TGTTCGAAGGACAGGAAGAA+GGG 0.540394 5_4:-29417393 Msa0847430:five_prime_UTR
CTCTCTTGAGAGATTATGCT+GGG 0.540530 5_4:-29414389 Msa0847430:CDS
TATCCCCATGCGAACTAGAC+CGG 0.540559 5_4:+29418711 None:intergenic
AGGAGGACCAGCTCCAGGCG+TGG 0.542309 5_4:-29416814 Msa0847430:five_prime_UTR
TGTGGTGTTGGCCTGTGCAA+AGG 0.544784 5_4:-29419092 Msa0847430:five_prime_UTR
CGTCTTCATATTGCCACCCA+AGG 0.545463 5_4:+29416491 None:intergenic
ATAGCCAAACCATTCAATCA+TGG 0.546481 5_4:+29413406 None:intergenic
TGGTTGACTTAGCCATAAAG+TGG 0.546730 5_4:-29417450 Msa0847430:five_prime_UTR
GGCCACTTCAAGCAAATTAG+CGG 0.546731 5_4:+29416144 None:intergenic
GGTACTTCAATGCCATGACT+TGG 0.547235 5_4:-29417843 Msa0847430:five_prime_UTR
TTGATATAAGTTCCAAGTCA+TGG 0.548827 5_4:+29417831 None:intergenic
GTCTACTGCATGAAGAGAGC+TGG 0.553075 5_4:-29413647 Msa0847430:CDS
ATTCATTTGAGGCAGAAGAA+GGG 0.553488 5_4:-29417100 Msa0847430:five_prime_UTR
TCCAAAAGATAACGAAGTCT+AGG 0.556143 5_4:+29418685 None:intergenic
CGCAGCAATAACTTATCCAC+AGG 0.556901 5_4:+29414429 None:intergenic
GGGACAAATTCCGGAAGCCA+TGG 0.556982 5_4:+29417229 None:intergenic
GAATATCTGATTTGAACCTC+AGG 0.557129 5_4:+29415855 None:intergenic
TTGAGGAAGGCATAGTTAGT+AGG 0.559798 5_4:-29416929 Msa0847430:five_prime_UTR
GGGACTACAAATGCCAGTCT+TGG 0.561293 5_4:+29416992 None:intergenic
ACAAGCATTAAATATGAATG+AGG 0.561421 5_4:+29414452 None:intergenic
ATTGTGCAAAGATTTACTGT+TGG 0.561606 5_4:-29418093 Msa0847430:five_prime_UTR
CGACCAAAATCCTCCACCAT+GGG 0.561674 5_4:+29416776 None:intergenic
CAAGCAATCAACATCTAACA+TGG 0.561806 5_4:-29413685 Msa0847430:CDS
ATCTAACATGGATGAGCAGA+TGG 0.561907 5_4:-29413673 Msa0847430:CDS
CATATTTAATGCTTGTCCTG+TGG 0.561973 5_4:-29414445 Msa0847430:CDS
TCTCTCTTGAGAGATTATGC+TGG 0.563751 5_4:-29414390 Msa0847430:CDS
AAGGGTGAAGTCTAAAACCG+TGG 0.564712 5_4:-29416407 Msa0847430:CDS
TTGGAGCTATGTTGGTCCGA+TGG 0.567378 5_4:-29417470 Msa0847430:five_prime_UTR
TGGAAGAAAGCTGCTCTACA+AGG 0.568181 5_4:+29415804 None:intergenic
TTGAACAATTGCGTTTCTGG+AGG 0.568460 5_4:-29417738 Msa0847430:five_prime_UTR
CACTCAGAAAGAGCAACAAA+GGG 0.568873 5_4:-29413493 Msa0847430:three_prime_UTR
TTCATTTGAGGCAGAAGAAG+GGG 0.569328 5_4:-29417099 Msa0847430:five_prime_UTR
AGATTGGACTAAGGTAAAAG+TGG 0.570286 5_4:+29416233 None:intergenic
CCAGTATTTCCATTCCAACA+TGG 0.570341 5_4:+29415999 None:intergenic
CATGCCCATTAGCTTCCTGT+AGG 0.572698 5_4:+29417254 None:intergenic
TGAACAATTGCGTTTCTGGA+GGG 0.574857 5_4:-29417737 Msa0847430:five_prime_UTR
GAATTGTTGAGATTGGACTA+AGG 0.576275 5_4:+29416224 None:intergenic
AAGCTAATGGGCATGTGCCA+TGG 0.576661 5_4:-29417246 Msa0847430:five_prime_UTR
TCTATAACAACCATATCCGC+AGG 0.577442 5_4:+29416602 None:intergenic
GTGAGCTTCTTGATAAGGAG+AGG 0.579183 5_4:-29415928 Msa0847430:CDS
TCACTCAGAAAGAGCAACAA+AGG 0.580997 5_4:-29413494 Msa0847430:three_prime_UTR
CATGCTTGTATAATTTCACA+AGG 0.581879 5_4:+29413527 None:intergenic
TCCATTGAAATATTCGGCAG+AGG 0.583035 5_4:-29416834 Msa0847430:five_prime_UTR
ATTCCCCATACTAAGCGTGC+TGG 0.583462 5_4:-29416205 Msa0847430:CDS
TCGAATCTCAGCCCTGTCAA+GGG 0.586728 5_4:+29414512 None:intergenic
TTCTCTTGGATTCCTTCAAG+GGG 0.587063 5_4:-29418860 Msa0847430:five_prime_UTR
AGATTGAACAACCTTTGCAC+AGG 0.589782 5_4:+29419081 None:intergenic
CTTTACCTGTGTCAGAAGAG+AGG 0.590429 5_4:+29413578 None:intergenic
GGATAATGAAGAGATCTTGG+AGG 0.590806 5_4:-29414562 Msa0847430:CDS
ATATGAATGAGGAAAGGTGA+TGG 0.591285 5_4:+29414463 None:intergenic
CAAATGGCTTCACCATGCAA+CGG 0.593881 5_4:-29416661 Msa0847430:five_prime_UTR
AGCACTGCATTGGCACATGA+AGG 0.594722 5_4:+29418141 None:intergenic
TAACCATAATTCTGTGGTGT+TGG 0.597688 5_4:-29419104 Msa0847430:five_prime_UTR
GAAGTATATAAATTGTTCGA+AGG 0.598118 5_4:-29417406 Msa0847430:five_prime_UTR
GATACATGCTGAATAGGAGA+AGG 0.599201 5_4:+29416058 None:intergenic
CATTCTTCCAAAGCTGCAGT+AGG 0.599386 5_4:+29418201 None:intergenic
GAGTAGATGGTTATCTGTAA+GGG 0.599414 5_4:-29416425 Msa0847430:CDS
GTGAAGTCTAAAACCGTGGA+TGG 0.600356 5_4:-29416403 Msa0847430:CDS
TTCAGCATGTATCATTGACA+TGG 0.600554 5_4:-29416048 Msa0847430:CDS
GAAGGAAAAGTGCTTGAGGA+AGG 0.600700 5_4:-29416942 Msa0847430:five_prime_UTR
CAGGATGAAAGTATTGATTG+AGG 0.600967 5_4:-29413616 Msa0847430:CDS
CCAGAACTCTGCATCATCAG+TGG 0.601604 5_4:+29417495 None:intergenic
GGACTAAGGTAAAAGTGGAC+CGG 0.602725 5_4:+29416238 None:intergenic
ATGTTTAACTGCAGGACCTG+CGG 0.602985 5_4:-29416618 Msa0847430:five_prime_UTR
ACTGGCATTTGTAGTCCCAC+AGG 0.603035 5_4:-29416987 Msa0847430:five_prime_UTR
TCTGCATCATCAGTGGACTC+GGG 0.603374 5_4:+29417502 None:intergenic
TTGCTTGAAGTGGCCAAATG+TGG 0.609884 5_4:-29416136 Msa0847430:CDS
GGTTGTTATAGAGAAGACAT+TGG 0.610631 5_4:-29416591 Msa0847430:five_prime_UTR
ACTGCATGAAGAGAGCTGGT+TGG 0.613277 5_4:-29413643 Msa0847430:CDS
ATTGAAATATTCGGCAGAGG+AGG 0.613642 5_4:-29416831 Msa0847430:five_prime_UTR
AACATGGATGAGCAGATGGA+TGG 0.613885 5_4:-29413669 Msa0847430:CDS
AGACTTTGTTCTGTGCCTGT+GGG 0.613922 5_4:+29416972 None:intergenic
GTATTGATTGAGGCATGTGA+GGG 0.614312 5_4:-29413606 Msa0847430:CDS
AGTATTGATTGAGGCATGTG+AGG 0.619879 5_4:-29413607 Msa0847430:CDS
GAAATACTGGAACAAGATCA+GGG 0.619937 5_4:-29415986 Msa0847430:CDS
CTGGTCTGCTCCTGAAAACG+GGG 0.621513 5_4:+29418887 None:intergenic
AATTACGAATACAGAGGTCA+AGG 0.622108 5_4:+29416537 None:intergenic
GAAAGAAGGAAAAGTGCTTG+AGG 0.622242 5_4:-29416946 Msa0847430:five_prime_UTR
AGGATATCTTGAACCTGCAG+AGG 0.622979 5_4:-29415627 Msa0847430:intron
TCGACCAAAATCCTCCACCA+TGG 0.628293 5_4:+29416775 None:intergenic
GTCTGCTCCTGAAAACGGGG+CGG 0.630805 5_4:+29418890 None:intergenic
TGCAGTGTTAACCCGTTGCA+TGG 0.631503 5_4:+29416649 None:intergenic
TTCTTGAAAAGGTGACATTG+GGG 0.633084 5_4:-29417288 Msa0847430:five_prime_UTR
AAATTCCTCTCTTCTGACAC+AGG 0.638061 5_4:-29413583 Msa0847430:CDS
AGAAGAACTACTGCCATCCA+CGG 0.639888 5_4:+29416390 None:intergenic
TGCTGGGAAGCAGCAACATG+AGG 0.643837 5_4:-29414373 Msa0847430:intron
AAAAGCATATTGAGTTCCTG+AGG 0.644099 5_4:-29415871 Msa0847430:CDS
CATTAAATATGAATGAGGAA+AGG 0.645590 5_4:+29414457 None:intergenic
TTTATGGCTAAGTCAACCAT+CGG 0.646290 5_4:+29417454 None:intergenic
CGGCCGGTCTAGTTCGCATG+GGG 0.649062 5_4:-29418714 Msa0847430:five_prime_UTR
ATCTACTTGCATATCTAGGG+AGG 0.655039 5_4:-29417599 Msa0847430:five_prime_UTR
CGACTGGCTGAAGTTAGGGA+AGG 0.656513 5_4:-29417791 Msa0847430:five_prime_UTR
ACGACTACATGCACTTCAGT+CGG 0.656863 5_4:-29416468 Msa0847430:exon
CAGGAGGGTAAAGCCTTGGG+TGG 0.657865 5_4:-29416504 Msa0847430:five_prime_UTR
AGCCAGTCGTCAATGGACAA+AGG 0.660409 5_4:+29417805 None:intergenic
GGACCAGCACGCTTAGTATG+GGG 0.661425 5_4:+29416202 None:intergenic
GCTGCGTACACCCATAGCAA+AGG 0.664229 5_4:+29417334 None:intergenic
ACCATCAAAGAATTACAGCA+AGG 0.665527 5_4:+29416289 None:intergenic
ACTGGAACAAGATCAGGGCA+GGG 0.666522 5_4:-29415981 Msa0847430:CDS
GTTCGAAGGACAGGAAGAAG+GGG 0.667602 5_4:-29417392 Msa0847430:five_prime_UTR
TCTTGAAAAGGTGACATTGG+GGG 0.672618 5_4:-29417287 Msa0847430:five_prime_UTR
TCTCTTGGATTCCTTCAAGG+GGG 0.674862 5_4:-29418859 Msa0847430:five_prime_UTR
TGATGATAACCATAATTCTG+TGG 0.683140 5_4:-29419110 Msa0847430:five_prime_UTR
GGAGAAAATTACGAATACAG+AGG 0.683604 5_4:+29416531 None:intergenic
GGTACTTCAAAATAGAGACA+TGG 0.684530 5_4:+29416558 None:intergenic
GTTCTATTCGACTTGCCACG+TGG 0.691575 5_4:-29415718 Msa0847430:CDS
GAACTACTTTGATATCTCAG+AGG 0.697499 5_4:-29419035 Msa0847430:intron
ATTAGACAGTGTATTCCACG+TGG 0.781453 5_4:+29415703 None:intergenic
GAATAGAACTTTCAACACAG+CGG 0.821500 5_4:+29415732 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTAACAAACATAACA+AGG + chr5_4:29414505-29414524 None:intergenic 15.0%
!! TATTAATGTGAAAAGAAAAT+TGG + chr5_4:29417785-29417804 None:intergenic 15.0%
!!! TCATATCATAAGATTTTTGT+AGG - chr5_4:29413839-29413858 Msa0847430:intron 20.0%
!! ATATGAAGCAATCAATAAAA+TGG + chr5_4:29414471-29414490 None:intergenic 20.0%
!!! TTTATTGATTGCTTCATATA+TGG - chr5_4:29414472-29414491 Msa0847430:CDS 20.0%
!!! ACTAATGTTTCATTTGATTT+TGG - chr5_4:29414552-29414571 Msa0847430:CDS 20.0%
!!! TGTTTAGAGTTTATAAAGAA+TGG - chr5_4:29414607-29414626 Msa0847430:intron 20.0%
!!! GTTTAGAGTTTATAAAGAAT+GGG - chr5_4:29414608-29414627 Msa0847430:intron 20.0%
!!! TTTGTAAGTTTTTCAAATGA+AGG + chr5_4:29414835-29414854 None:intergenic 20.0%
!! TATACAGTATTACAGAATAT+GGG - chr5_4:29417407-29417426 Msa0847430:five_prime_UTR 20.0%
!!! TTTTCACATTAATATGTAAG+AGG - chr5_4:29417791-29417810 Msa0847430:five_prime_UTR 20.0%
!! TTTCACATTAATATGTAAGA+GGG - chr5_4:29417792-29417811 Msa0847430:five_prime_UTR 20.0%
!!! GTTCAAATATAATGATTTTC+AGG + chr5_4:29418532-29418551 None:intergenic 20.0%
!! CATTATATTTGAACACAATT+TGG - chr5_4:29418538-29418557 Msa0847430:intron 20.0%
!! TTATACAAGCATGTAAATAT+AGG - chr5_4:29418955-29418974 Msa0847430:intron 20.0%
!! CTGTAGGATATAATTTAAAT+TGG - chr5_4:29419102-29419121 Msa0847430:five_prime_UTR 20.0%
! TTTGTAGGACAATTAGAATT+CGG - chr5_4:29413854-29413873 Msa0847430:intron 25.0%
!! ACATTTTCCTAATGAAATTG+AGG + chr5_4:29414130-29414149 None:intergenic 25.0%
!! GAGTTTTACAGATTTTATCA+TGG + chr5_4:29414425-29414444 None:intergenic 25.0%
! AAAATCTGTAAAACTCTTGA+AGG - chr5_4:29414429-29414448 Msa0847430:CDS 25.0%
!!! GTTTCATTTGATTTTGGAAA+AGG - chr5_4:29414558-29414577 Msa0847430:CDS 25.0%
!! TAAACTCTAAACAAGTTTTG+CGG + chr5_4:29414600-29414619 None:intergenic 25.0%
! AAATAAATTTGGAAGTCTTC+CGG + chr5_4:29414923-29414942 None:intergenic 25.0%
! TCGAACAATTTATATACTTC+TGG + chr5_4:29415066-29415085 None:intergenic 25.0%
! GAAGTATATAAATTGTTCGA+AGG - chr5_4:29415066-29415085 Msa0847430:intron 25.0%
! TTGATCAATTATTGGCATTT+GGG - chr5_4:29415282-29415301 Msa0847430:intron 25.0%
!! CTAAAATTGATAACCTGATA+AGG - chr5_4:29415453-29415472 Msa0847430:intron 25.0%
!! TAATTCTTTGATGGTAGAAT+GGG - chr5_4:29416191-29416210 Msa0847430:CDS 25.0%
! CCAAAATAAAGAAGCTATTT+CGG - chr5_4:29416572-29416591 Msa0847430:five_prime_UTR 25.0%
!!! ACCTTTAGAGAAATGTTTTT+CGG - chr5_4:29416815-29416834 Msa0847430:five_prime_UTR 25.0%
!! GAAAATTTGTGTTTAAAGTG+TGG - chr5_4:29417000-29417019 Msa0847430:five_prime_UTR 25.0%
! TCTTGTATTGAAGCTAAAAT+CGG - chr5_4:29417067-29417086 Msa0847430:five_prime_UTR 25.0%
! GGTAAAAGAAAAAAGTTGTT+GGG - chr5_4:29417088-29417107 Msa0847430:five_prime_UTR 25.0%
!! AAGAATTTTATATGCACATC+TGG - chr5_4:29417131-29417150 Msa0847430:five_prime_UTR 25.0%
! ATGTTGAGAAAGAAATAAGT+GGG - chr5_4:29417349-29417368 Msa0847430:five_prime_UTR 25.0%
! GTATACAGTATTACAGAATA+TGG - chr5_4:29417406-29417425 Msa0847430:five_prime_UTR 25.0%
! ATTGTTTAGGAATATTGCAA+AGG + chr5_4:29417475-29417494 None:intergenic 25.0%
!! TTTTGTAGAGAAGAATTCTA+AGG - chr5_4:29417581-29417600 Msa0847430:five_prime_UTR 25.0%
!!! TTTCTTTTAGTTGCAACAAT+TGG - chr5_4:29417736-29417755 Msa0847430:five_prime_UTR 25.0%
! TTCACATTAATATGTAAGAG+GGG - chr5_4:29417793-29417812 Msa0847430:five_prime_UTR 25.0%
! CATTAAATATGAATGAGGAA+AGG + chr5_4:29418018-29418037 None:intergenic 25.0%
! ACAAGCATTAAATATGAATG+AGG + chr5_4:29418023-29418042 None:intergenic 25.0%
!!! TTTGAATGTTTTTTACCTGA+TGG - chr5_4:29418131-29418150 Msa0847430:five_prime_UTR 25.0%
! ACATTTACTTGATATGTGTT+TGG + chr5_4:29418208-29418227 None:intergenic 25.0%
! ATATGGTTAATTATGTTCAG+TGG - chr5_4:29418362-29418381 Msa0847430:intron 25.0%
! GAATATACACTAGAAAATTG+TGG + chr5_4:29418469-29418488 None:intergenic 25.0%
! AACACAATTTGGATGATTAA+TGG - chr5_4:29418549-29418568 Msa0847430:intron 25.0%
!! TAATGGATATCACGTATATT+TGG - chr5_4:29418566-29418585 Msa0847430:intron 25.0%
!! AACAGAAATTTTGTCAGTAA+CGG + chr5_4:29418734-29418753 None:intergenic 25.0%
!!! AGGGTATTAGATTTTGTAAA+TGG - chr5_4:29418998-29419017 Msa0847430:intron 25.0%
!! TTTTGTATTCCATGATTGAA+TGG - chr5_4:29419057-29419076 Msa0847430:five_prime_UTR 25.0%
!! TATCAAGATTTTGTTACTGT+AGG - chr5_4:29419086-29419105 Msa0847430:five_prime_UTR 25.0%
TGATGATAACCATAATTCTG+TGG - chr5_4:29413362-29413381 Msa0847430:three_prime_UTR 30.0%
CTAAAAGGTTGAATGTTAGA+AGG + chr5_4:29413661-29413680 None:intergenic 30.0%
TTGTAGGACAATTAGAATTC+GGG - chr5_4:29413855-29413874 Msa0847430:intron 30.0%
!! TCTGTTTTAGATCTGCTATT+GGG + chr5_4:29414036-29414055 None:intergenic 30.0%
ACTATCTTAGATATTTGCCT+AGG - chr5_4:29414063-29414082 Msa0847430:intron 30.0%
GTCAAACTCATTATTTCCTA+TGG - chr5_4:29414236-29414255 Msa0847430:intron 30.0%
ATTGTGCAAAGATTTACTGT+TGG - chr5_4:29414379-29414398 Msa0847430:CDS 30.0%
!! TTTGATTTTGGAAAAGGTCT+TGG - chr5_4:29414564-29414583 Msa0847430:CDS 30.0%
TTGATATAAGTTCCAAGTCA+TGG + chr5_4:29414644-29414663 None:intergenic 30.0%
!!! ATATCTTGTTTTGGAGTCTT+TGG - chr5_4:29414897-29414916 Msa0847430:intron 30.0%
CACTGTTGCGAAAATAAATT+TGG + chr5_4:29414934-29414953 None:intergenic 30.0%
ATATAAATTGTTCGAAGGAC+AGG - chr5_4:29415071-29415090 Msa0847430:intron 30.0%
!! GACTTGAGTTGATCAATTAT+TGG - chr5_4:29415274-29415293 Msa0847430:intron 30.0%
GTTGATCAATTATTGGCATT+TGG - chr5_4:29415281-29415300 Msa0847430:intron 30.0%
!! TGGTGATGAATCTTTTATGA+AGG - chr5_4:29415344-29415363 Msa0847430:intron 30.0%
GATTATTCCATTTAGACAAC+AGG + chr5_4:29415423-29415442 None:intergenic 30.0%
ATGCAGTCCATTGAAATATT+CGG - chr5_4:29415632-29415651 Msa0847430:CDS 30.0%
TTTCAAAAATTTGCAGCAAG+CGG + chr5_4:29415763-29415782 None:intergenic 30.0%
! TTCGTAATTTTCTCCTTAAC+AGG - chr5_4:29415949-29415968 Msa0847430:CDS 30.0%
! TAATTTTCTCCTTAACAGGA+GGG - chr5_4:29415953-29415972 Msa0847430:CDS 30.0%
! GTAATTCTTTGATGGTAGAA+TGG - chr5_4:29416190-29416209 Msa0847430:CDS 30.0%
AACAAAGAAAAGTCCACATT+TGG + chr5_4:29416352-29416371 None:intergenic 30.0%
!!! TGTGGACTTTTCTTTGTTTT+AGG - chr5_4:29416354-29416373 Msa0847430:CDS 30.0%
TTATCTGTCAATTTCCATGT+TGG - chr5_4:29416459-29416478 Msa0847430:CDS 30.0%
!! CCGAAATAGCTTCTTTATTT+TGG + chr5_4:29416575-29416594 None:intergenic 30.0%
! GAAAAACATTTCTCTAAAGG+TGG + chr5_4:29416816-29416835 None:intergenic 30.0%
!! CCTTTAGAGAAATGTTTTTC+GGG - chr5_4:29416816-29416835 Msa0847430:five_prime_UTR 30.0%
AATTAATTGTTTACCTCTGC+AGG + chr5_4:29416861-29416880 None:intergenic 30.0%
CGGTAAAAGAAAAAAGTTGT+TGG - chr5_4:29417087-29417106 Msa0847430:five_prime_UTR 30.0%
!! TGAAATCGAAGAGTATTCTA+AGG - chr5_4:29417194-29417213 Msa0847430:five_prime_UTR 30.0%
TGAGTAGAATAATGAAGATC+TGG - chr5_4:29417218-29417237 Msa0847430:five_prime_UTR 30.0%
ATATTTCCCTATTTGTGGTT+GGG + chr5_4:29417274-29417293 None:intergenic 30.0%
TTTCCATATTTCCCTATTTG+TGG + chr5_4:29417279-29417298 None:intergenic 30.0%
TGGAAATTGTATTACACTAG+AGG - chr5_4:29417293-29417312 Msa0847430:five_prime_UTR 30.0%
! CACTTATTTCTTTCTCAACA+TGG + chr5_4:29417350-29417369 None:intergenic 30.0%
CATGTTGAGAAAGAAATAAG+TGG - chr5_4:29417348-29417367 Msa0847430:five_prime_UTR 30.0%
GATCTCTGTGTTTATTGTTT+AGG + chr5_4:29417488-29417507 None:intergenic 30.0%
TTGCAACAATTGGAATCTAA+TGG - chr5_4:29417746-29417765 Msa0847430:five_prime_UTR 30.0%
TCCACCAGCATAATTTAAAA+TGG - chr5_4:29417816-29417835 Msa0847430:five_prime_UTR 30.0%
!!! TCTGCCATTTTAAATTATGC+TGG + chr5_4:29417823-29417842 None:intergenic 30.0%
!!! AATGTTTTTTACCTGATGGA+TGG - chr5_4:29418135-29418154 Msa0847430:five_prime_UTR 30.0%
! GTATTTTCCATAGATGAAAG+TGG - chr5_4:29418241-29418260 Msa0847430:intron 30.0%
TTATCTTCCACTTTCATCTA+TGG + chr5_4:29418251-29418270 None:intergenic 30.0%
ATAGCACAGCTCTTAAATAA+AGG + chr5_4:29418296-29418315 None:intergenic 30.0%
ATTTGGAAACCTTAAAATCG+TGG - chr5_4:29418583-29418602 Msa0847430:intron 30.0%
! ATTAGCTAACCACGATTTTA+AGG + chr5_4:29418595-29418614 None:intergenic 30.0%
ACTGACAAAATTTCTGTTAC+AGG - chr5_4:29418736-29418755 Msa0847430:five_prime_UTR 30.0%
CTGACAAAATTTCTGTTACA+GGG - chr5_4:29418737-29418756 Msa0847430:five_prime_UTR 30.0%
!! AGATGTTGATTGCTTGTTAT+GGG + chr5_4:29418783-29418802 None:intergenic 30.0%
! TAGATGTTGATTGCTTGTTA+TGG + chr5_4:29418784-29418803 None:intergenic 30.0%
CATGCTTGTATAATTTCACA+AGG + chr5_4:29418948-29418967 None:intergenic 30.0%
TTCTCTCAAATGTTACTGAT+TGG - chr5_4:29419022-29419041 Msa0847430:intron 30.0%
TATTCCATGATTGAATGGTT+TGG - chr5_4:29419062-29419081 Msa0847430:five_prime_UTR 30.0%
TAACCATAATTCTGTGGTGT+TGG - chr5_4:29413368-29413387 Msa0847430:three_prime_UTR 35.0%
GAACTACTTTGATATCTCAG+AGG - chr5_4:29413437-29413456 Msa0847430:three_prime_UTR 35.0%
TGATATCTCAGAGGTAAACA+TGG - chr5_4:29413446-29413465 Msa0847430:three_prime_UTR 35.0%
! ATTCTTTTACCTCCAGAACA+TGG - chr5_4:29413532-29413551 Msa0847430:exon 35.0%
AGGAATCCAAGAGAAATATC+TGG + chr5_4:29413607-29413626 None:intergenic 35.0%
ATTTCTCTTGGATTCCTTCA+AGG - chr5_4:29413610-29413629 Msa0847430:CDS 35.0%
TTTCTCTTGGATTCCTTCAA+GGG - chr5_4:29413611-29413630 Msa0847430:CDS 35.0%
! TAACATTCAACCTTTTAGCG+AGG - chr5_4:29413663-29413682 Msa0847430:CDS 35.0%
! CAAGATGATGTATTTGTTGC+TGG - chr5_4:29413724-29413743 Msa0847430:intron 35.0%
! TGTTGCTGGACAAGATTTTA+CGG - chr5_4:29413738-29413757 Msa0847430:intron 35.0%
! TCCTAGACTTCGTTATCTTT+TGG - chr5_4:29413786-29413805 Msa0847430:intron 35.0%
TCCAAAAGATAACGAAGTCT+AGG + chr5_4:29413790-29413809 None:intergenic 35.0%
!! CTGTTTTAGATCTGCTATTG+GGG + chr5_4:29414035-29414054 None:intergenic 35.0%
!! GTCTGTTTTAGATCTGCTAT+TGG + chr5_4:29414037-29414056 None:intergenic 35.0%
! TTCAGGTTTATGTTAAGCCT+AGG + chr5_4:29414083-29414102 None:intergenic 35.0%
AGGCTTAACATAAACCTGAA+AGG - chr5_4:29414083-29414102 Msa0847430:intron 35.0%
AGGATTGCCTCAATTTCATT+AGG - chr5_4:29414120-29414139 Msa0847430:intron 35.0%
! TCCATATCAGTAGTTGATGT+GGG - chr5_4:29414152-29414171 Msa0847430:intron 35.0%
AAACCTTAGTGCTTATATCG+TGG + chr5_4:29414185-29414204 None:intergenic 35.0%
! CTATACTGATTGCCATAGTA+AGG - chr5_4:29414302-29414321 Msa0847430:intron 35.0%
AGATCCAACCAAAAAACACA+AGG + chr5_4:29414811-29414830 None:intergenic 35.0%
ACGAATCTACTTGCATATCT+AGG - chr5_4:29414869-29414888 Msa0847430:intron 35.0%
CGAATCTACTTGCATATCTA+GGG - chr5_4:29414870-29414889 Msa0847430:intron 35.0%
TTTATGGCTAAGTCAACCAT+CGG + chr5_4:29415021-29415040 None:intergenic 35.0%
TCTTGTTGCAATCCACTTTA+TGG + chr5_4:29415037-29415056 None:intergenic 35.0%
! CTTCACTTTAAGAGATCTCT+CGG - chr5_4:29415110-29415129 Msa0847430:intron 35.0%
! GCTTTTCAGAGTTCTTGAAA+AGG - chr5_4:29415173-29415192 Msa0847430:intron 35.0%
AGTTCTTGAAAAGGTGACAT+TGG - chr5_4:29415182-29415201 Msa0847430:intron 35.0%
GTTCTTGAAAAGGTGACATT+GGG - chr5_4:29415183-29415202 Msa0847430:intron 35.0%
TTCTTGAAAAGGTGACATTG+GGG - chr5_4:29415184-29415203 Msa0847430:intron 35.0%
TCAACTCAAGTCCAATCTTT+GGG + chr5_4:29415266-29415285 None:intergenic 35.0%
ATCAACTCAAGTCCAATCTT+TGG + chr5_4:29415267-29415286 None:intergenic 35.0%
! TGAAGGAACTGATTCATTTG+AGG - chr5_4:29415361-29415380 Msa0847430:intron 35.0%
! ATTCATTTGAGGCAGAAGAA+GGG - chr5_4:29415372-29415391 Msa0847430:intron 35.0%
GAACAAAGTCTATCGAAAGA+AGG - chr5_4:29415512-29415531 Msa0847430:intron 35.0%
GTAGGTGTTTGGTTGAATTA+AGG - chr5_4:29415561-29415580 Msa0847430:intron 35.0%
AATCTAGCATCTGTTTGAAC+AGG + chr5_4:29415734-29415753 None:intergenic 35.0%
TGAAGCCATTTGTTCAGTTT+CGG + chr5_4:29415803-29415822 None:intergenic 35.0%
TTGGGATTATGTTTAACTGC+AGG - chr5_4:29415846-29415865 Msa0847430:CDS 35.0%
GGTTGTTATAGAGAAGACAT+TGG - chr5_4:29415881-29415900 Msa0847430:CDS 35.0%
GGTACTTCAAAATAGAGACA+TGG + chr5_4:29415917-29415936 None:intergenic 35.0%
AATTACGAATACAGAGGTCA+AGG + chr5_4:29415938-29415957 None:intergenic 35.0%
GGAGAAAATTACGAATACAG+AGG + chr5_4:29415944-29415963 None:intergenic 35.0%
! GTAATTTTCTCCTTAACAGG+AGG - chr5_4:29415952-29415971 Msa0847430:CDS 35.0%
GGATGTTATCATCTCATTTC+AGG - chr5_4:29416025-29416044 Msa0847430:CDS 35.0%
GAGTAGATGGTTATCTGTAA+GGG - chr5_4:29416047-29416066 Msa0847430:CDS 35.0%
! TCCTTGCTGTAATTCTTTGA+TGG - chr5_4:29416182-29416201 Msa0847430:CDS 35.0%
ACCATCAAAGAATTACAGCA+AGG + chr5_4:29416186-29416205 None:intergenic 35.0%
AGATTGGACTAAGGTAAAAG+TGG + chr5_4:29416242-29416261 None:intergenic 35.0%
GAATTGTTGAGATTGGACTA+AGG + chr5_4:29416251-29416270 None:intergenic 35.0%
! TGTACACTACCAACTTTTTG+AGG + chr5_4:29416294-29416313 None:intergenic 35.0%
! GAAACAATGTCCAGTTTTCA+AGG - chr5_4:29416381-29416400 Msa0847430:CDS 35.0%
GTCAATGATACATGCTGAAT+AGG + chr5_4:29416423-29416442 None:intergenic 35.0%
TTCAGCATGTATCATTGACA+TGG - chr5_4:29416424-29416443 Msa0847430:CDS 35.0%
TGTCAATTTCCATGTTGGAA+TGG - chr5_4:29416464-29416483 Msa0847430:exon 35.0%
GAAATACTGGAACAAGATCA+GGG - chr5_4:29416486-29416505 Msa0847430:five_prime_UTR 35.0%
!!! GGAAACTTTTGAAGCTTTAC+AGG - chr5_4:29416512-29416531 Msa0847430:five_prime_UTR 35.0%
GAAGCTTTACAGGATCTTTA+CGG - chr5_4:29416522-29416541 Msa0847430:five_prime_UTR 35.0%
! AAAAGCATATTGAGTTCCTG+AGG - chr5_4:29416601-29416620 Msa0847430:five_prime_UTR 35.0%
! GAATATCTGATTTGAACCTC+AGG + chr5_4:29416620-29416639 None:intergenic 35.0%
CAGCTTTCTTCCATATCTTA+TGG - chr5_4:29416678-29416697 Msa0847430:five_prime_UTR 35.0%
AATCAGATCGCCATAAGATA+TGG + chr5_4:29416691-29416710 None:intergenic 35.0%
! TCTTATGGCGATCTGATTTT+TGG - chr5_4:29416693-29416712 Msa0847430:five_prime_UTR 35.0%
GAATAGAACTTTCAACACAG+CGG + chr5_4:29416743-29416762 None:intergenic 35.0%
CCCGAAAAACATTTCTCTAA+AGG + chr5_4:29416819-29416838 None:intergenic 35.0%
TCAGTTAGATATAGCTGTTG+TGG - chr5_4:29417158-29417177 Msa0847430:five_prime_UTR 35.0%
CATATTTCCCTATTTGTGGT+TGG + chr5_4:29417275-29417294 None:intergenic 35.0%
CAACCACAAATAGGGAAATA+TGG - chr5_4:29417273-29417292 Msa0847430:five_prime_UTR 35.0%
ACAATTGGAATCTAATGGCT+AGG - chr5_4:29417751-29417770 Msa0847430:five_prime_UTR 35.0%
!! GCCATTTTAAATTATGCTGG+TGG + chr5_4:29417820-29417839 None:intergenic 35.0%
AGAGTATGCAAGTCATTCAT+TGG - chr5_4:29417840-29417859 Msa0847430:five_prime_UTR 35.0%
AGGATCAGTTTCGTATACTA+TGG - chr5_4:29417982-29418001 Msa0847430:intron 35.0%
ATATGAATGAGGAAAGGTGA+TGG + chr5_4:29418012-29418031 None:intergenic 35.0%
CATATTTAATGCTTGTCCTG+TGG - chr5_4:29418027-29418046 Msa0847430:intron 35.0%
!!! TTTTTTACCTGATGGATGGA+TGG - chr5_4:29418139-29418158 Msa0847430:five_prime_UTR 35.0%
GGTTAATTATGTTCAGTGGA+TGG - chr5_4:29418366-29418385 Msa0847430:intron 35.0%
! GATGGCTAATGGATATAACA+AGG - chr5_4:29418384-29418403 Msa0847430:intron 35.0%
! TGTTACTTGTGTTCAGTAGA+CGG + chr5_4:29418426-29418445 None:intergenic 35.0%
ATCTGCATATACTTGCATGA+TGG - chr5_4:29418681-29418700 Msa0847430:intron 35.0%
!! ATTGCTTGTTATGGGAAATG+AGG + chr5_4:29418775-29418794 None:intergenic 35.0%
CAAGCAATCAACATCTAACA+TGG - chr5_4:29418787-29418806 Msa0847430:five_prime_UTR 35.0%
CTCAATCAATACTTTCATCC+TGG + chr5_4:29418858-29418877 None:intergenic 35.0%
!! CAGGATGAAAGTATTGATTG+AGG - chr5_4:29418856-29418875 Msa0847430:five_prime_UTR 35.0%
ATAGCCAAACCATTCAATCA+TGG + chr5_4:29419069-29419088 None:intergenic 35.0%
AGATTGAACAACCTTTGCAC+AGG + chr5_4:29413394-29413413 None:intergenic 40.0%
AGCAGACCAGATATTTCTCT+TGG - chr5_4:29413598-29413617 Msa0847430:CDS 40.0%
TTCTCTTGGATTCCTTCAAG+GGG - chr5_4:29413612-29413631 Msa0847430:CDS 40.0%
! ACCTTTTAGCGAGGATTCTA+TGG - chr5_4:29413672-29413691 Msa0847430:CDS 40.0%
TCCATAGAATCCTCGCTAAA+AGG + chr5_4:29413676-29413695 None:intergenic 40.0%
! GGACAATTAGAATTCGGGTT+AGG - chr5_4:29413860-29413879 Msa0847430:intron 40.0%
ATCCTAAAAGCTAGCTCAAG+TGG - chr5_4:29413892-29413911 Msa0847430:intron 40.0%
AAACCTGAAAGGTAGTTCAG+TGG - chr5_4:29414094-29414113 Msa0847430:intron 40.0%
AACCTGAAAGGTAGTTCAGT+GGG - chr5_4:29414095-29414114 Msa0847430:intron 40.0%
! GTCCATATCAGTAGTTGATG+TGG - chr5_4:29414151-29414170 Msa0847430:intron 40.0%
TCCCACATCAACTACTGATA+TGG + chr5_4:29414156-29414175 None:intergenic 40.0%
CAACCACGATATAAGCACTA+AGG - chr5_4:29414179-29414198 Msa0847430:intron 40.0%
TGAAGGTGAATGCCTTACTA+TGG + chr5_4:29414317-29414336 None:intergenic 40.0%
CCAGAAACGCAATTGTTCAA+TGG + chr5_4:29414734-29414753 None:intergenic 40.0%
CCATTGAACAATTGCGTTTC+TGG - chr5_4:29414731-29414750 Msa0847430:intron 40.0%
! TTGAACAATTGCGTTTCTGG+AGG - chr5_4:29414734-29414753 Msa0847430:intron 40.0%
! TGAACAATTGCGTTTCTGGA+GGG - chr5_4:29414735-29414754 Msa0847430:intron 40.0%
!!! ATTCCCTGCCTTGTGTTTTT+TGG - chr5_4:29414800-29414819 Msa0847430:intron 40.0%
CAACCAAAAAACACAAGGCA+GGG + chr5_4:29414806-29414825 None:intergenic 40.0%
ATCTACTTGCATATCTAGGG+AGG - chr5_4:29414873-29414892 Msa0847430:intron 40.0%
!! TAGGGAGGCATATCTTGTTT+TGG - chr5_4:29414888-29414907 Msa0847430:intron 40.0%
! TGGTTGACTTAGCCATAAAG+TGG - chr5_4:29415022-29415041 Msa0847430:intron 40.0%
TCTTGAAAAGGTGACATTGG+GGG - chr5_4:29415185-29415204 Msa0847430:intron 40.0%
!! CCAATCTTTGGGACAAATTC+CGG + chr5_4:29415255-29415274 None:intergenic 40.0%
ACAAAATCCGGAAGAGATTC+TGG - chr5_4:29415324-29415343 Msa0847430:intron 40.0%
TTCATCACCAGAATCTCTTC+CGG + chr5_4:29415334-29415353 None:intergenic 40.0%
! GATTCATTTGAGGCAGAAGA+AGG - chr5_4:29415371-29415390 Msa0847430:intron 40.0%
! TTCATTTGAGGCAGAAGAAG+GGG - chr5_4:29415373-29415392 Msa0847430:intron 40.0%
AGGGGATGTTGAAATGTCAT+TGG - chr5_4:29415391-29415410 Msa0847430:intron 40.0%
GCATCAACCTGTTGTCTAAA+TGG - chr5_4:29415413-29415432 Msa0847430:intron 40.0%
!! GAAAGAAGGAAAAGTGCTTG+AGG - chr5_4:29415526-29415545 Msa0847430:intron 40.0%
! TTGAGGAAGGCATAGTTAGT+AGG - chr5_4:29415543-29415562 Msa0847430:intron 40.0%
AGGCATAGTTAGTAGGTGTT+TGG - chr5_4:29415550-29415569 Msa0847430:intron 40.0%
! TTCACGTTTTCAGCTTCTTC+AGG - chr5_4:29415599-29415618 Msa0847430:intron 40.0%
! TCACGTTTTCAGCTTCTTCA+GGG - chr5_4:29415600-29415619 Msa0847430:intron 40.0%
TCCATTGAAATATTCGGCAG+AGG - chr5_4:29415638-29415657 Msa0847430:CDS 40.0%
TCCTCTGCCGAATATTTCAA+TGG + chr5_4:29415642-29415661 None:intergenic 40.0%
ATTGAAATATTCGGCAGAGG+AGG - chr5_4:29415641-29415660 Msa0847430:CDS 40.0%
GAAGCCATTTGTTCAGTTTC+GGG + chr5_4:29415802-29415821 None:intergenic 40.0%
TCTATAACAACCATATCCGC+AGG + chr5_4:29415873-29415892 None:intergenic 40.0%
CATCTCATTTCAGGAGTAGA+TGG - chr5_4:29416034-29416053 Msa0847430:CDS 40.0%
GGAGTAGATGGTTATCTGTA+AGG - chr5_4:29416046-29416065 Msa0847430:CDS 40.0%
GTATGGGGAATTGTTGAGAT+TGG + chr5_4:29416258-29416277 None:intergenic 40.0%
!! ATGTCCAGTTTTCAAGGAAC+TGG - chr5_4:29416387-29416406 Msa0847430:CDS 40.0%
AATGCCAGTTCCTTGAAAAC+TGG + chr5_4:29416394-29416413 None:intergenic 40.0%
GATACATGCTGAATAGGAGA+AGG + chr5_4:29416417-29416436 None:intergenic 40.0%
CCAGTATTTCCATTCCAACA+TGG + chr5_4:29416476-29416495 None:intergenic 40.0%
CCATGTTGGAATGGAAATAC+TGG - chr5_4:29416473-29416492 Msa0847430:exon 40.0%
GGAAATACTGGAACAAGATC+AGG - chr5_4:29416485-29416504 Msa0847430:five_prime_UTR 40.0%
TTACGGTGAGCTTCTTGATA+AGG - chr5_4:29416539-29416558 Msa0847430:five_prime_UTR 40.0%
!! ATGGCGATCTGATTTTTGGA+CGG - chr5_4:29416697-29416716 Msa0847430:five_prime_UTR 40.0%
ATTAGACAGTGTATTCCACG+TGG + chr5_4:29416772-29416791 None:intergenic 40.0%
GTTAGATATAGCTGTTGTGG+TGG - chr5_4:29417161-29417180 Msa0847430:five_prime_UTR 40.0%
TCATAAGCCCAACCACAAAT+AGG - chr5_4:29417264-29417283 Msa0847430:five_prime_UTR 40.0%
CATAAGCCCAACCACAAATA+GGG - chr5_4:29417265-29417284 Msa0847430:five_prime_UTR 40.0%
ACATGGTATCTAGAGATCAC+TGG + chr5_4:29417333-29417352 None:intergenic 40.0%
CAAACACGCACATATCGATA+GGG - chr5_4:29417537-29417556 Msa0847430:five_prime_UTR 40.0%
AAGTTCGACACTGACATGAA+AGG - chr5_4:29417626-29417645 Msa0847430:five_prime_UTR 40.0%
GTCAAGCAAGTTATCGTACA+AGG - chr5_4:29417652-29417671 Msa0847430:five_prime_UTR 40.0%
TTGGAATCTAATGGCTAGGT+AGG - chr5_4:29417755-29417774 Msa0847430:five_prime_UTR 40.0%
ATCTCTTCATTATCCTGCAG+TGG + chr5_4:29417905-29417924 None:intergenic 40.0%
GCAGGATAATGAAGAGATCT+TGG - chr5_4:29417907-29417926 Msa0847430:intron 40.0%
GGATAATGAAGAGATCTTGG+AGG - chr5_4:29417910-29417929 Msa0847430:intron 40.0%
ATAAGTTATTGCTGCGCAAC+AGG - chr5_4:29418050-29418069 Msa0847430:five_prime_UTR 40.0%
TCTCTCTTGAGAGATTATGC+TGG - chr5_4:29418082-29418101 Msa0847430:five_prime_UTR 40.0%
CTCTCTTGAGAGATTATGCT+GGG - chr5_4:29418083-29418102 Msa0847430:five_prime_UTR 40.0%
! TTGGCAGCACAGATTTTCAA+TGG + chr5_4:29418189-29418208 None:intergenic 40.0%
TATGTTCAGTGGATGGCTAA+TGG - chr5_4:29418373-29418392 Msa0847430:intron 40.0%
! TCGTGGTTAGCTAATGTTTG+TGG - chr5_4:29418600-29418619 Msa0847430:intron 40.0%
! TACTTGCATGATGGTGTAGT+TGG - chr5_4:29418690-29418709 Msa0847430:five_prime_UTR 40.0%
AACGGTTTGCATATAGCACA+AGG + chr5_4:29418716-29418735 None:intergenic 40.0%
ATCTAACATGGATGAGCAGA+TGG - chr5_4:29418799-29418818 Msa0847430:five_prime_UTR 40.0%
!! AGTATTGATTGAGGCATGTG+AGG - chr5_4:29418865-29418884 Msa0847430:five_prime_UTR 40.0%
!! GTATTGATTGAGGCATGTGA+GGG - chr5_4:29418866-29418885 Msa0847430:five_prime_UTR 40.0%
AAATTCCTCTCTTCTGACAC+AGG - chr5_4:29418889-29418908 Msa0847430:five_prime_UTR 40.0%
TCACTCAGAAAGAGCAACAA+AGG - chr5_4:29418978-29418997 Msa0847430:intron 40.0%
CACTCAGAAAGAGCAACAAA+GGG - chr5_4:29418979-29418998 Msa0847430:intron 40.0%
AGGCCAACACCACAGAATTA+TGG + chr5_4:29413374-29413393 None:intergenic 45.0%
TGTCACAAGTTGCCATGTTC+TGG + chr5_4:29413547-29413566 None:intergenic 45.0%
ATCTGGTCTGCTCCTGAAAA+CGG + chr5_4:29413590-29413609 None:intergenic 45.0%
TCTCTTGGATTCCTTCAAGG+GGG - chr5_4:29413613-29413632 Msa0847430:CDS 45.0%
!!! CACCACTTGAGCTAGCTTTT+AGG + chr5_4:29413897-29413916 None:intergenic 45.0%
AAAAGCTAGCTCAAGTGGTG+AGG - chr5_4:29413897-29413916 Msa0847430:intron 45.0%
ATGTCTAGTCCTGAGCATGA+CGG + chr5_4:29413988-29414007 None:intergenic 45.0%
! AGGACTAGACATCTGAAGTG+TGG - chr5_4:29413996-29414015 Msa0847430:intron 45.0%
TAGGATCTGTCTGCAACCAT+AGG + chr5_4:29414255-29414274 None:intergenic 45.0%
CATTCTTCCAAAGCTGCAGT+AGG + chr5_4:29414274-29414293 None:intergenic 45.0%
GGTACTTCAATGCCATGACT+TGG - chr5_4:29414629-29414648 Msa0847430:intron 45.0%
TTCCTTTGTCCATTGACGAC+TGG - chr5_4:29414665-29414684 Msa0847430:intron 45.0%
TAACTTCAGCCAGTCGTCAA+TGG + chr5_4:29414677-29414696 None:intergenic 45.0%
! ATTGACGACTGGCTGAAGTT+AGG - chr5_4:29414676-29414695 Msa0847430:intron 45.0%
! TTGACGACTGGCTGAAGTTA+GGG - chr5_4:29414677-29414696 Msa0847430:intron 45.0%
AACACAAGGCAGGGAATATC+TGG + chr5_4:29414797-29414816 None:intergenic 45.0%
CCAACCAAAAAACACAAGGC+AGG + chr5_4:29414807-29414826 None:intergenic 45.0%
!!! CCTGCCTTGTGTTTTTTGGT+TGG - chr5_4:29414804-29414823 Msa0847430:intron 45.0%
!!! CTTGTTTTGGAGTCTTTGGC+CGG - chr5_4:29414901-29414920 Msa0847430:intron 45.0%
! ATGATGCAGAGTTCTGGTCT+TGG - chr5_4:29414983-29415002 Msa0847430:intron 45.0%
!! TTCTGGTCTTGGAGCTATGT+TGG - chr5_4:29414994-29415013 Msa0847430:intron 45.0%
TTGTTCGAAGGACAGGAAGA+AGG - chr5_4:29415078-29415097 Msa0847430:intron 45.0%
TGTTCGAAGGACAGGAAGAA+GGG - chr5_4:29415079-29415098 Msa0847430:intron 45.0%
ATCAGCCTACAGGAAGCTAA+TGG - chr5_4:29415213-29415232 Msa0847430:intron 45.0%
TCAGCCTACAGGAAGCTAAT+GGG - chr5_4:29415214-29415233 Msa0847430:intron 45.0%
CCGGAATTTGTCCCAAAGAT+TGG - chr5_4:29415252-29415271 Msa0847430:intron 45.0%
! GATTTTGTCACAGAGGCAAC+TGG + chr5_4:29415312-29415331 None:intergenic 45.0%
GTTGCCTCTGTGACAAAATC+CGG - chr5_4:29415312-29415331 Msa0847430:intron 45.0%
! TCTTCCGGATTTTGTCACAG+AGG + chr5_4:29415319-29415338 None:intergenic 45.0%
AGACTTTGTTCTGTGCCTGT+GGG + chr5_4:29415503-29415522 None:intergenic 45.0%
TAGACTTTGTTCTGTGCCTG+TGG + chr5_4:29415504-29415523 None:intergenic 45.0%
!! GAAGGAAAAGTGCTTGAGGA+AGG - chr5_4:29415530-29415549 Msa0847430:intron 45.0%
TGCTCCCGAAACTGAACAAA+TGG - chr5_4:29415795-29415814 Msa0847430:CDS 45.0%
CAAATGGCTTCACCATGCAA+CGG - chr5_4:29415811-29415830 Msa0847430:CDS 45.0%
AAATGGCTTCACCATGCAAC+GGG - chr5_4:29415812-29415831 Msa0847430:CDS 45.0%
!! CAACGGGTTAACACTGCATT+GGG - chr5_4:29415828-29415847 Msa0847430:CDS 45.0%
ATGTTTAACTGCAGGACCTG+CGG - chr5_4:29415854-29415873 Msa0847430:CDS 45.0%
AAGGCTTTACCCTCCTGTTA+AGG + chr5_4:29415965-29415984 None:intergenic 45.0%
TTAACAGGAGGGTAAAGCCT+TGG - chr5_4:29415964-29415983 Msa0847430:CDS 45.0%
TAACAGGAGGGTAAAGCCTT+GGG - chr5_4:29415965-29415984 Msa0847430:CDS 45.0%
ACGACTACATGCACTTCAGT+CGG - chr5_4:29416004-29416023 Msa0847430:CDS 45.0%
! AAGGGTGAAGTCTAAAACCG+TGG - chr5_4:29416065-29416084 Msa0847430:CDS 45.0%
! GTGAAGTCTAAAACCGTGGA+TGG - chr5_4:29416069-29416088 Msa0847430:CDS 45.0%
AGAAGAACTACTGCCATCCA+CGG + chr5_4:29416085-29416104 None:intergenic 45.0%
TCGACAGAACTTACCACTTC+CGG - chr5_4:29416215-29416234 Msa0847430:CDS 45.0%
GGACTAAGGTAAAAGTGGAC+CGG + chr5_4:29416237-29416256 None:intergenic 45.0%
!! TCCCGCTAATTTGCTTGAAG+TGG - chr5_4:29416326-29416345 Msa0847430:CDS 45.0%
GCCACTTCAAGCAAATTAGC+GGG + chr5_4:29416330-29416349 None:intergenic 45.0%
GGCCACTTCAAGCAAATTAG+CGG + chr5_4:29416331-29416350 None:intergenic 45.0%
TTGCTTGAAGTGGCCAAATG+TGG - chr5_4:29416336-29416355 Msa0847430:CDS 45.0%
GTGAGCTTCTTGATAAGGAG+AGG - chr5_4:29416544-29416563 Msa0847430:five_prime_UTR 45.0%
TGGAAGAAAGCTGCTCTACA+AGG + chr5_4:29416671-29416690 None:intergenic 45.0%
!!! AAATGTTTTTCGGGCGCTGA+AGG - chr5_4:29416825-29416844 Msa0847430:five_prime_UTR 45.0%
AGGATATCTTGAACCTGCAG+AGG - chr5_4:29416845-29416864 Msa0847430:five_prime_UTR 45.0%
TCTAGAGATCACTGGTACAG+AGG + chr5_4:29417325-29417344 None:intergenic 45.0%
CCTATCGATATGTGCGTGTT+TGG + chr5_4:29417539-29417558 None:intergenic 45.0%
CCAAACACGCACATATCGAT+AGG - chr5_4:29417536-29417555 Msa0847430:five_prime_UTR 45.0%
GAATCTAATGGCTAGGTAGG+TGG - chr5_4:29417758-29417777 Msa0847430:five_prime_UTR 45.0%
ATAACGTACTGTTCCACTGC+AGG - chr5_4:29417889-29417908 Msa0847430:five_prime_UTR 45.0%
TGGAGGCTTATGCTAAGTCA+TGG - chr5_4:29417927-29417946 Msa0847430:intron 45.0%
GGAGGCTTATGCTAAGTCAT+GGG - chr5_4:29417928-29417947 Msa0847430:intron 45.0%
CGCAGCAATAACTTATCCAC+AGG + chr5_4:29418046-29418065 None:intergenic 45.0%
CATACATCCATCCATCCATC+AGG + chr5_4:29418149-29418168 None:intergenic 45.0%
! CTGATGGATGGATGGATGTA+TGG - chr5_4:29418147-29418166 Msa0847430:five_prime_UTR 45.0%
AACATGGATGAGCAGATGGA+TGG - chr5_4:29418803-29418822 Msa0847430:five_prime_UTR 45.0%
CTTTACCTGTGTCAGAAGAG+AGG + chr5_4:29418897-29418916 None:intergenic 45.0%
!!! AATGTTTTTATTATAAAATT+TGG + chr5_4:29413928-29413947 None:intergenic 5.0%
CACAAGTTGCCATGTTCTGG+AGG + chr5_4:29413544-29413563 None:intergenic 50.0%
TCTGGTCTGCTCCTGAAAAC+GGG + chr5_4:29413589-29413608 None:intergenic 50.0%
GATTCCTTCAAGGGGGATAC+TGG - chr5_4:29413620-29413639 Msa0847430:CDS 50.0%
ACTTCCAGTATCCCCCTTGA+AGG + chr5_4:29413627-29413646 None:intergenic 50.0%
! GCTGGACAAGATTTTACGGC+CGG - chr5_4:29413742-29413761 Msa0847430:intron 50.0%
TATCCCCATGCGAACTAGAC+CGG + chr5_4:29413764-29413783 None:intergenic 50.0%
TGTCTAGTCCTGAGCATGAC+GGG + chr5_4:29413987-29414006 None:intergenic 50.0%
CACCCACTGAACTACCTTTC+AGG + chr5_4:29414100-29414119 None:intergenic 50.0%
GAAAGGTAGTTCAGTGGGTG+AGG - chr5_4:29414100-29414119 Msa0847430:intron 50.0%
GACAGATCCTACTGCAGCTT+TGG - chr5_4:29414264-29414283 Msa0847430:intron 50.0%
! AGCACTGCATTGGCACATGA+AGG + chr5_4:29414334-29414353 None:intergenic 50.0%
TTCGCACTTCAGCACTGCAT+TGG + chr5_4:29414344-29414363 None:intergenic 50.0%
! GGAAAAGGTCTTGGCTCGTT+TGG - chr5_4:29414573-29414592 Msa0847430:intron 50.0%
AGCCAGTCGTCAATGGACAA+AGG + chr5_4:29414670-29414689 None:intergenic 50.0%
TGGAGGGTCTGCATTCGATA+TGG - chr5_4:29414751-29414770 Msa0847430:intron 50.0%
! TCTGCATCATCAGTGGACTC+GGG + chr5_4:29414973-29414992 None:intergenic 50.0%
! CTCTGCATCATCAGTGGACT+CGG + chr5_4:29414974-29414993 None:intergenic 50.0%
CCAGAACTCTGCATCATCAG+TGG + chr5_4:29414980-29414999 None:intergenic 50.0%
! CCACTGATGATGCAGAGTTC+TGG - chr5_4:29414977-29414996 Msa0847430:intron 50.0%
TTGGAGCTATGTTGGTCCGA+TGG - chr5_4:29415002-29415021 Msa0847430:intron 50.0%
GTTCGAAGGACAGGAAGAAG+GGG - chr5_4:29415080-29415099 Msa0847430:intron 50.0%
TCTCGGCAACTCCTTTGCTA+TGG - chr5_4:29415127-29415146 Msa0847430:intron 50.0%
! CTCGGCAACTCCTTTGCTAT+GGG - chr5_4:29415128-29415147 Msa0847430:intron 50.0%
! CATGCCCATTAGCTTCCTGT+AGG + chr5_4:29415221-29415240 None:intergenic 50.0%
! AAGCTAATGGGCATGTGCCA+TGG - chr5_4:29415226-29415245 Msa0847430:intron 50.0%
CAGTCTTGGCAGACCTTATC+AGG + chr5_4:29415469-29415488 None:intergenic 50.0%
CTGATAAGGTCTGCCAAGAC+TGG - chr5_4:29415467-29415486 Msa0847430:intron 50.0%
GGGACTACAAATGCCAGTCT+TGG + chr5_4:29415483-29415502 None:intergenic 50.0%
ACTGGCATTTGTAGTCCCAC+AGG - chr5_4:29415485-29415504 Msa0847430:intron 50.0%
! CGTTTTCAGCTTCTTCAGGG+TGG - chr5_4:29415603-29415622 Msa0847430:intron 50.0%
CGACCAAAATCCTCCACCAT+GGG + chr5_4:29415699-29415718 None:intergenic 50.0%
TCGACCAAAATCCTCCACCA+TGG + chr5_4:29415700-29415719 None:intergenic 50.0%
TGCAGTGTTAACCCGTTGCA+TGG + chr5_4:29415826-29415845 None:intergenic 50.0%
!! GCAACGGGTTAACACTGCAT+TGG - chr5_4:29415827-29415846 Msa0847430:CDS 50.0%
CGTCTTCATATTGCCACCCA+AGG + chr5_4:29415984-29416003 None:intergenic 50.0%
GTGGATGGCAGTAGTTCTTC+TGG - chr5_4:29416084-29416103 Msa0847430:CDS 50.0%
CAGTAGTTCTTCTGGCGTTC+AGG - chr5_4:29416092-29416111 Msa0847430:CDS 50.0%
TCCAAAAGCTGATGCGCGTT+TGG - chr5_4:29416119-29416138 Msa0847430:CDS 50.0%
! TCCAAACGCGCATCAGCTTT+TGG + chr5_4:29416123-29416142 None:intergenic 50.0%
AGGTAAAAGTGGACCGGAAG+TGG + chr5_4:29416231-29416250 None:intergenic 50.0%
ATTCCCCATACTAAGCGTGC+TGG - chr5_4:29416267-29416286 Msa0847430:CDS 50.0%
AGGACCAGCACGCTTAGTAT+GGG + chr5_4:29416274-29416293 None:intergenic 50.0%
! CGTGCTGGTCCTCAAAAAGT+TGG - chr5_4:29416282-29416301 Msa0847430:CDS 50.0%
TACTGGAACAAGATCAGGGC+AGG - chr5_4:29416490-29416509 Msa0847430:five_prime_UTR 50.0%
ACTGGAACAAGATCAGGGCA+GGG - chr5_4:29416491-29416510 Msa0847430:five_prime_UTR 50.0%
! GTTCTATTCGACTTGCCACG+TGG - chr5_4:29416754-29416773 Msa0847430:five_prime_UTR 50.0%
GGTTTCTGATGCCCTTGACA+GGG - chr5_4:29417949-29417968 Msa0847430:intron 50.0%
TCGAATCTCAGCCCTGTCAA+GGG + chr5_4:29417963-29417982 None:intergenic 50.0%
GTCTACTGCATGAAGAGAGC+TGG - chr5_4:29418825-29418844 Msa0847430:five_prime_UTR 50.0%
ACTGCATGAAGAGAGCTGGT+TGG - chr5_4:29418829-29418848 Msa0847430:five_prime_UTR 50.0%
!! TGTGGTGTTGGCCTGTGCAA+AGG - chr5_4:29413380-29413399 Msa0847430:three_prime_UTR 55.0%
CTGGTCTGCTCCTGAAAACG+GGG + chr5_4:29413588-29413607 None:intergenic 55.0%
CAATTCACCCCGTCATGCTC+AGG - chr5_4:29413976-29413995 Msa0847430:intron 55.0%
GTCTAGTCCTGAGCATGACG+GGG + chr5_4:29413986-29414005 None:intergenic 55.0%
! CGACTGGCTGAAGTTAGGGA+AGG - chr5_4:29414681-29414700 Msa0847430:intron 55.0%
GCTGCGTACACCCATAGCAA+AGG + chr5_4:29415141-29415160 None:intergenic 55.0%
GGGACAAATTCCGGAAGCCA+TGG + chr5_4:29415246-29415265 None:intergenic 55.0%
!! GTGCCCATGGTGGAGGATTT+TGG - chr5_4:29415693-29415712 Msa0847430:CDS 55.0%
AACTGCAGGACCTGCGGATA+TGG - chr5_4:29415860-29415879 Msa0847430:CDS 55.0%
!! ACGCGCATCAGCTTTTGGAG+TGG + chr5_4:29416118-29416137 None:intergenic 55.0%
GGACCAGCACGCTTAGTATG+GGG + chr5_4:29416273-29416292 None:intergenic 55.0%
GAGGACCAGCACGCTTAGTA+TGG + chr5_4:29416275-29416294 None:intergenic 55.0%
GGGTTTCTGATGCCCTTGAC+AGG - chr5_4:29417948-29417967 Msa0847430:intron 55.0%
CTCGAATCTCAGCCCTGTCA+AGG + chr5_4:29417964-29417983 None:intergenic 55.0%
CTTGACAGGGCTGAGATTCG+AGG - chr5_4:29417962-29417981 Msa0847430:intron 55.0%
! TGCTGCGCAACAGGCTTGTT+AGG - chr5_4:29418059-29418078 Msa0847430:five_prime_UTR 55.0%
TGCTGGGAAGCAGCAACATG+AGG - chr5_4:29418099-29418118 Msa0847430:five_prime_UTR 55.0%
AAGAGAGCTGGTTGGAGTCC+AGG - chr5_4:29418837-29418856 Msa0847430:five_prime_UTR 55.0%
GTCTGCTCCTGAAAACGGGG+CGG + chr5_4:29413585-29413604 None:intergenic 60.0%
! TACGGCCGGTCTAGTTCGCA+TGG - chr5_4:29413756-29413775 Msa0847430:intron 60.0%
! ACGGCCGGTCTAGTTCGCAT+GGG - chr5_4:29413757-29413776 Msa0847430:intron 60.0%
GGGGGATGCTATCAGCCTAC+AGG - chr5_4:29415203-29415222 Msa0847430:intron 60.0%
TGGGCATGTGCCATGGCTTC+CGG - chr5_4:29415233-29415252 Msa0847430:intron 60.0%
TCCAGGCGTGGGAGTTGGAT+GGG - chr5_4:29415670-29415689 Msa0847430:CDS 60.0%
CAGGAGGGTAAAGCCTTGGG+TGG - chr5_4:29415968-29415987 Msa0847430:CDS 60.0%
! CACTGCACCGCCCCGTTTTC+AGG - chr5_4:29413575-29413594 Msa0847430:CDS 65.0%
! CGGCCGGTCTAGTTCGCATG+GGG - chr5_4:29413758-29413777 Msa0847430:intron 65.0%
CTCCAGGCGTGGGAGTTGGA+TGG - chr5_4:29415669-29415688 Msa0847430:CDS 65.0%
CCAGGCGTGGGAGTTGGATG+GGG - chr5_4:29415671-29415690 Msa0847430:CDS 65.0%
! GGAGTTGGATGGGGTGCCCA+TGG - chr5_4:29415680-29415699 Msa0847430:CDS 65.0%
! GTTGGATGGGGTGCCCATGG+TGG - chr5_4:29415683-29415702 Msa0847430:CDS 65.0%
GGCAGAGGAGGACCAGCTCC+AGG - chr5_4:29415653-29415672 Msa0847430:CDS 70.0%
AGGAGGACCAGCTCCAGGCG+TGG - chr5_4:29415658-29415677 Msa0847430:CDS 70.0%
GGAGGACCAGCTCCAGGCGT+GGG - chr5_4:29415659-29415678 Msa0847430:CDS 70.0%
CCAACTCCCACGCCTGGAGC+TGG + chr5_4:29415668-29415687 None:intergenic 70.0%
CCAGCTCCAGGCGTGGGAGT+TGG - chr5_4:29415665-29415684 Msa0847430:CDS 70.0%
CCCCATCCAACTCCCACGCC+TGG + chr5_4:29415674-29415693 None:intergenic 70.0%
! GGATGGGGTGCCCATGGTGG+AGG - chr5_4:29415686-29415705 Msa0847430:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 29413349 29419145 29413349 ID=Msa0847430;Name=Msa0847430
chr5_4 mRNA 29413349 29419145 29413349 ID=Msa0847430-mRNA-1;Parent=Msa0847430;Name=Msa0847430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=1991|1|1|1|0.8|0.66|6|193|419
chr5_4 exon 29413349 29413736 29413349 ID=Msa0847430-mRNA-1:exon:10926;Parent=Msa0847430-mRNA-1
chr5_4 exon 29414374 29414583 29414374 ID=Msa0847430-mRNA-1:exon:10925;Parent=Msa0847430-mRNA-1
chr5_4 exon 29415628 29417914 29415628 ID=Msa0847430-mRNA-1:exon:10924;Parent=Msa0847430-mRNA-1
chr5_4 exon 29418044 29418229 29418044 ID=Msa0847430-mRNA-1:exon:10923;Parent=Msa0847430-mRNA-1
chr5_4 exon 29418684 29418946 29418684 ID=Msa0847430-mRNA-1:exon:10922;Parent=Msa0847430-mRNA-1
chr5_4 exon 29419036 29419145 29419036 ID=Msa0847430-mRNA-1:exon:10921;Parent=Msa0847430-mRNA-1
chr5_4 five_prime_UTR 29419036 29419145 29419036 ID=Msa0847430-mRNA-1:five_prime_utr;Parent=Msa0847430-mRNA-1
chr5_4 five_prime_UTR 29418684 29418946 29418684 ID=Msa0847430-mRNA-1:five_prime_utr;Parent=Msa0847430-mRNA-1
chr5_4 five_prime_UTR 29418044 29418229 29418044 ID=Msa0847430-mRNA-1:five_prime_utr;Parent=Msa0847430-mRNA-1
chr5_4 five_prime_UTR 29416483 29417914 29416483 ID=Msa0847430-mRNA-1:five_prime_utr;Parent=Msa0847430-mRNA-1
chr5_4 CDS 29415628 29416482 29415628 ID=Msa0847430-mRNA-1:cds;Parent=Msa0847430-mRNA-1
chr5_4 CDS 29414374 29414583 29414374 ID=Msa0847430-mRNA-1:cds;Parent=Msa0847430-mRNA-1
chr5_4 CDS 29413542 29413736 29413542 ID=Msa0847430-mRNA-1:cds;Parent=Msa0847430-mRNA-1
chr5_4 three_prime_UTR 29413349 29413541 29413349 ID=Msa0847430-mRNA-1:three_prime_utr;Parent=Msa0847430-mRNA-1
Gene Sequence

>Msa0847430

ATGCACTTCAGTCGGATGTTATCATCTCATTTCAGGAGTAGATGGTTATCTGTAAGGGTGAAGTCTAAAACCGTGGATGGCAGTAGTTCTTCTGGCGTTCAGGCCACTCCAAAAGCTGATGCGCGTTTGGATACGATATATGAAGACTCAGATATGTCTTCTACAACAAGTCCTTGCTGTAATTCTTTGATGGTAGAATGGGCTCGACAGAACTTACCACTTCCGGTCCACTTTTACCTTAGTCCAATCTCAACAATTCCCCATACTAAGCGTGCTGGTCCTCAAAAAGTTGGTAGTGTACATAACACACATGATCCCGCTAATTTGCTTGAAGTGGCCAAATGTGGACTTTTCTTTGTTTTAGGCATTGAAACAATGTCCAGTTTTCAAGGAACTGGCATTCCTTCTCCTATTCAGCATGTATCATTGACATGGAAGTTACATTCATTATCTGTCAATTTCCATGTTGGAATGGAAATACTGGAACAAGATCAGGGCAGGGAAACTTTTGAAGCTTTACAGGATCTTTACGGTGAGCTTCTTGATAAGGAGAGGTTTAACCAAAATAAAGAAGCTATTTCGGATGATAAAAAGCATATTGAGTTCCTGAGGTTCAAATCAGATATTCACGAAAGTTACTCGACATTTATTGAAGACCTTGTAGAGCAGCTTTCTTCCATATCTTATGGCGATCTGATTTTTGGACGGCAAGTTTCAGTATATTTACACCGCTGTGTTGAAAGTTCTATTCGACTTGCCACGTGGAATACACTGTCTAATGCTCGTGTTCTTGAACTTTTACCACCTTTAGAGAAATGTTTTTCGGGCGCTGAAGGATATCTTGAACCTGCAGAGGATAATGAAGAGATCTTGGAGGCTTATGCTAAGTCATGGGTTTCTGATGCCCTTGACAGGGCTGAGATTCGAGGATCAGTTTCGTATACTATGGCTGTCCATCACCTTTCCTCATTCATATTTAATGCTTGTCCTGTGGATAAGTTATTGCTGCGCAACAGGCTTGTTAGGTCTCTCTTGAGAGATTATGCTGGGAAGCAGCAACATGAGGGAATGTTAATGAACCTCATTTCCCATAACAAGCAATCAACATCTAACATGGATGAGCAGATGGATGGTCTACTGCATGAAGAGAGCTGGTTGGAGTCCAGGATGAAAGTATTGATTGAGGCATGTGAGGGAAATTCCTCTCTTCTGACACAGGTAAAGAAGTTGAAGTATGCTGCAGAGAAAAATTCCTTGTGA
Protein sequence

>Msa0847430

MHFSRMLSSHFRSRWLSVRVKSKTVDGSSSSGVQATPKADARLDTIYEDSDMSSTTSPCCNSLMVEWARQNLPLPVHFYLSPISTIPHTKRAGPQKVGSVHNTHDPANLLEVAKCGLFFVLGIETMSSFQGTGIPSPIQHVSLTWKLHSLSVNFHVGMEILEQDQGRETFEALQDLYGELLDKERFNQNKEAISDDKKHIEFLRFKSDIHESYSTFIEDLVEQLSSISYGDLIFGRQVSVYLHRCVESSIRLATWNTLSNARVLELLPPLEKCFSGAEGYLEPAEDNEEILEAYAKSWVSDALDRAEIRGSVSYTMAVHHLSSFIFNACPVDKLLLRNRLVRSLLRDYAGKQQHEGMLMNLISHNKQSTSNMDEQMDGLLHEESWLESRMKVLIEACEGNSSLLTQVKKLKYAAEKNSL*