AlfalfaGEDB | Msa0851830

M. sativa cultivar zhongmu-4 / Msa0851830

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851830	XP_039690649.1	82.948	821	130	5	1	812	889	1708	0.0	1360
Msa0851830	XP_039690649.1	96.798	812	26	0	1	812	1	812	0.0	1648

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851830	sp\|O81832\|Y4729_ARATH	46.926	797	377	11	5	794	1	758	0.0	720

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851830	G7K610	96.798	812	26	0	1	812	1	812	0.0	1645

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0733060	Msa0851830	0.870689	1.207026e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0851830	MtrunA17_Chr5g0428101	96.798	812	26	0	1	812	1	812	1645
Msa0851830	MtrunA17_Chr5g0428111	82.948	821	130	5	1	812	1	820	1360
Msa0851830	MtrunA17_Chr5g0422921	69.128	826	225	9	7	812	1	816	1157
Msa0851830	MtrunA17_Chr3g0093161	65.580	828	256	9	1	812	1	815	1102
Msa0851830	MtrunA17_Chr8g0361431	63.903	784	252	7	12	792	20	775	1007
Msa0851830	MtrunA17_Chr3g0078551	57.401	831	323	11	6	808	4	831	939
Msa0851830	MtrunA17_Chr3g0078521	55.886	841	335	14	1	812	1	834	923
Msa0851830	MtrunA17_Chr3g0078531	55.372	847	327	16	1	812	12	842	912
Msa0851830	MtrunA17_Chr3g0078541	56.601	818	314	15	28	812	36	845	909
Msa0851830	MtrunA17_Chr8g0361281	53.174	835	359	13	1	812	1	826	855

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0851830	AT4G27290.2	47.407	810	400	12	5	794	1	804	742
Msa0851830	AT4G27290.1	46.926	797	377	11	5	794	1	758	720
Msa0851830	AT4G21380.1	44.765	831	409	13	25	812	27	850	685
Msa0851830	AT1G11340.1	44.982	827	402	19	28	812	18	833	664
Msa0851830	AT4G27300.1	46.363	811	396	18	25	812	21	815	655
Msa0851830	AT1G65800.1	45.682	799	385	17	27	787	26	813	654
Msa0851830	AT1G65790.1	44.058	833	407	15	25	812	25	843	641
Msa0851830	AT1G11330.1	40.850	847	444	14	1	808	1	829	622
Msa0851830	AT1G11330.2	40.780	846	448	16	1	808	1	831	620
Msa0851830	AT4G21390.1	43.621	823	388	24	22	791	19	818	617

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Find 161 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGGTTCCTTTGGTTG+AGG	0.475637	5_4:-42398222	None:intergenic
AAATACTTTACCTCAACCAA+AGG	0.618036	5_4:+42398212	Msa0851830:CDS
AAATATCCCCGTTCGAAGAG+TGG	0.552556	5_4:+42395243	Msa0851830:CDS
AAATCAGATGTATTCAGCTT+TGG	0.407963	5_4:+42397863	Msa0851830:CDS
AAATCTGTAGGTCAGGACCA+TGG	0.653015	5_4:+42395665	Msa0851830:CDS
AAATGAAGACGATCCATCTT+CGG	0.405919	5_4:+42395576	Msa0851830:CDS
AACAATAAGCTTGGTGAAGG+TGG	0.505810	5_4:+42397039	Msa0851830:CDS
AACATGATCACAATCTTATT+TGG	0.217142	5_4:+42397942	Msa0851830:CDS
AACCAGGTTTCTTAAATCAA+AGG	0.464374	5_4:+42398235	Msa0851830:CDS
AACCCAAACCACTCTTCGAA+CGG	0.550904	5_4:-42395251	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTTCCTGAATCCAAAATA+TGG	+	chr5_4:42395854-42395873	Msa0851830:CDS	30.0%
TAATATTCACAAGTATCCGA+TGG	-	chr5_4:42395898-42395917	None:intergenic	30.0%
ATCCAAGAATTTGTAGTATC+CGG	-	chr5_4:42396114-42396133	None:intergenic	30.0%
GTGAATATAGGTCATATACA+TGG	+	chr5_4:42396402-42396421	Msa0851830:intron	30.0%
AGAATCTTACCTTTAAGCTT+TGG	-	chr5_4:42396519-42396538	None:intergenic	30.0%
CAGTTTCATGACTTGAAATT+TGG	-	chr5_4:42396601-42396620	None:intergenic	30.0%
AATCCCATCTAATGAATCAA+AGG	+	chr5_4:42396922-42396941	Msa0851830:intron	30.0%
ATCCCATCTAATGAATCAAA+GGG	+	chr5_4:42396923-42396942	Msa0851830:intron	30.0%
TTCCCTTTGATTCATTAGAT+GGG	-	chr5_4:42396928-42396947	None:intergenic	30.0%
TTTCCCTTTGATTCATTAGA+TGG	-	chr5_4:42396929-42396948	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	42395031	42398323	42395031	ID=Msa0851830;Name=Msa0851830
chr5_4	mRNA	42395031	42398323	42395031	ID=Msa0851830-mRNA-1;Parent=Msa0851830;Name=Msa0851830-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0\|0\|0.71\|1\|1\|7\|0\|812
chr5_4	exon	42395031	42396330	42395031	ID=Msa0851830-mRNA-1:exon:13464;Parent=Msa0851830-mRNA-1
chr5_4	exon	42396412	42396528	42396412	ID=Msa0851830-mRNA-1:exon:13465;Parent=Msa0851830-mRNA-1
chr5_4	exon	42396944	42397080	42396944	ID=Msa0851830-mRNA-1:exon:13466;Parent=Msa0851830-mRNA-1
chr5_4	exon	42397181	42397391	42397181	ID=Msa0851830-mRNA-1:exon:13467;Parent=Msa0851830-mRNA-1
chr5_4	exon	42397502	42397739	42397502	ID=Msa0851830-mRNA-1:exon:13468;Parent=Msa0851830-mRNA-1
chr5_4	exon	42397817	42397967	42397817	ID=Msa0851830-mRNA-1:exon:13469;Parent=Msa0851830-mRNA-1
chr5_4	exon	42398039	42398323	42398039	ID=Msa0851830-mRNA-1:exon:13470;Parent=Msa0851830-mRNA-1
chr5_4	CDS	42395031	42396330	42395031	ID=Msa0851830-mRNA-1:cds;Parent=Msa0851830-mRNA-1
chr5_4	CDS	42396412	42396528	42396412	ID=Msa0851830-mRNA-1:cds;Parent=Msa0851830-mRNA-1
chr5_4	CDS	42396944	42397080	42396944	ID=Msa0851830-mRNA-1:cds;Parent=Msa0851830-mRNA-1
chr5_4	CDS	42397181	42397391	42397181	ID=Msa0851830-mRNA-1:cds;Parent=Msa0851830-mRNA-1
chr5_4	CDS	42397502	42397739	42397502	ID=Msa0851830-mRNA-1:cds;Parent=Msa0851830-mRNA-1
chr5_4	CDS	42397817	42397967	42397817	ID=Msa0851830-mRNA-1:cds;Parent=Msa0851830-mRNA-1
chr5_4	CDS	42398039	42398323	42398039	ID=Msa0851830-mRNA-1:cds;Parent=Msa0851830-mRNA-1

Gene Sequence

>Msa0851830

ATGGCTATTCTTCTAACTATGATTAATGTTTTTGTTATTATTATTATTAATGTTCTTGTTGTATTGTCTCATATTTCCTATGCAACAGATACCATTACCAAGTCTGCTTCATTGTCTAATGGCAGCACTTTGGTCTCTAAGGATGGAACCTTTGAGATGGGTTTCTTCAAACCTGGTAAGTCCTCAAACCGCTATGTAGGAATATGGTACAAAAATATCCCCGTTCGAAGAGTGGTTTGGGTTGCAAATCGAAACAATCCAACAAAAGACGATTCGAGCAAGTTGATCATAAGTCAAGATGGAAACCTTGTGCTTCTCAACCACAATGACTCTATTGTCTGGTCAACAAATGCATCAAGAAAAGCTTCAAGTCCTGTTGTGCAGCTCTTGAACAATGGTAATTTAGTGCTCAGAGATGAGAAGGATAACAATGAAGAAAGTTTTTTGTGGCAAGGCTTTGACCATCCTTGTGATACACTATTACCTGGAATGACGTTTGGATATAATCGAAAATTGGATTTTTATTGGAATCTCACTGCTTGGAAAAATGAAGACGATCCATCTTCGGGAGATTTATATGCATCTGTGGTGCTTACAAGCAATCCAGAAAGCATGATATGGAAGGGCTCGACTAAAATCTGTAGGTCAGGACCATGGAATCCTCTCTCTAGTGGAGTTGTCGGAATGAAACCTAACCCGCTTTATGATTATAAAGTTGTCGACAATGAAGATGAAGTGTATTATCAATTCGTGCTCAAGAATAGTTCTGTTACCTCTATAGCGGTACTCAACCAAACCCTATTGATTCGTCAACGCCTTGTTTATGTTCCTGAATCCAAAATATGGAGTGTTTACCAAATCATGCCATCGGATACTTGTGAATATTACAATGTTTGTGGAGCAAATGCACAATGCACGATTGATGGATCGCCAATGTGTCAATGTTTACCTGGATTTAAGCCAAAATCACCACAGCAATGGAATTCAATGGACTGGACACAAGGATGTGTGCGTGGTGGAAATTGGAGTTGCGGGATCAAAAACCGAGATGGGTTTCAGAAATTTGTTAGGATGAAGTTACCGGATACTACAAATTCTTGGATTAATCTAAACATGACACTTCAAGATTGCAAAACCAAATGCTTGCAAAATTGTTCTTGCACAGCTTATACCTATCTAGACCCAAAAGGAGAAGTCAGTGGTTGTTCTCTTTGGTTTAATGATCTTATTGATTTAAGACTTTCGCAAAGTAGCGAAGGCGATGATCTCTATATTCGAGTGGACAAAGATTCGAATTTTGGTCATATACATGGGCGTGGGAAGAAATTGGTCATGGTGGTTTCCATCACAGTTTCAATGTTGCTTGTGATGCTATTGGTATTATCCTACGTTTATATATTCAAACCAAAGCTTAAAGGGAAAAAAGAAAGAGATGGAGGAGAACATGAAGATTTTGAGCTTCCTTTCTTTGATCTAGCTACAATAATTAAGGCCACCGATAACTTCTCAACCAACAATAAGCTTGGTGAAGGTGGTTTTGGACCCGTATACAAGGCTACATTGCAAGATGGACATGAAATTGCAGTCAAAAGACTTTCAGGAAATTCTGAGCAAGGATCGAAAGAATTTAAAAACGAAGTCATATTGTGCGCTAAATTGCAACATCGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTGAAGGAGATGAAAAATTGTTACTCTATGAATACATGCCAAACAAAAGCCTTGATTCATTTATTTTTGATCCAACTCAAAGCAAATTGTTAAGCTGGTCAATGCGTTTTAACATCTTGAATGCAATAGCTCGAGGAATTCAATATCTTCATCAAGACTCTAGATTAAGGATCATACATAGGGATCTCAAGGCGAGTAATATTTTACTAGACAATGAAATGGATCCAAAAATTTCAGATTTTGGCATGGCTAGAATGTGTGGAGGTGATCAAATTGAAGGGACAACAAGAAGAATAGTTGGTACATACGGTTATATGGCACCCGAATATGTGATTCATGGGTTATTCTCTATTAAATCAGATGTATTCAGCTTTGGTGTATTATTGCTTGAAACAATAAGCGGAAAGAAAAACAGAACACTTACCTACCATGAACATGATCACAATCTTATTTGGCATGCCTGGAGATTGTGGAATGAAGGAACTCCACATGAATTGATTGATGAATGCTTAAGAGACACATGTGTTTTACATGAAGCTTTGCGATGTATCCAAATCGGTCTTTTATGTGTGCAACATGTTCCTAATGATAGGCCAAACATGAAATATGTGATTATGATGCTAGATAGTGAAAATACTTTACCTCAACCAAAGGAACCAGGTTTCTTAAATCAAAGGGTGTTGATTGAAGGACAACCTTCTTCTGAAAATGGAATAACTATATCAATATTAAGTGGTAGATAG

Protein sequence

>Msa0851830

MAILLTMINVFVIIIINVLVVLSHISYATDTITKSASLSNGSTLVSKDGTFEMGFFKPGKSSNRYVGIWYKNIPVRRVVWVANRNNPTKDDSSKLIISQDGNLVLLNHNDSIVWSTNASRKASSPVVQLLNNGNLVLRDEKDNNEESFLWQGFDHPCDTLLPGMTFGYNRKLDFYWNLTAWKNEDDPSSGDLYASVVLTSNPESMIWKGSTKICRSGPWNPLSSGVVGMKPNPLYDYKVVDNEDEVYYQFVLKNSSVTSIAVLNQTLLIRQRLVYVPESKIWSVYQIMPSDTCEYYNVCGANAQCTIDGSPMCQCLPGFKPKSPQQWNSMDWTQGCVRGGNWSCGIKNRDGFQKFVRMKLPDTTNSWINLNMTLQDCKTKCLQNCSCTAYTYLDPKGEVSGCSLWFNDLIDLRLSQSSEGDDLYIRVDKDSNFGHIHGRGKKLVMVVSITVSMLLVMLLVLSYVYIFKPKLKGKKERDGGEHEDFELPFFDLATIIKATDNFSTNNKLGEGGFGPVYKATLQDGHEIAVKRLSGNSEQGSKEFKNEVILCAKLQHRNLVKVLGCCIEGDEKLLLYEYMPNKSLDSFIFDPTQSKLLSWSMRFNILNAIARGIQYLHQDSRLRIIHRDLKASNILLDNEMDPKISDFGMARMCGGDQIEGTTRRIVGTYGYMAPEYVIHGLFSIKSDVFSFGVLLLETISGKKNRTLTYHEHDHNLIWHAWRLWNEGTPHELIDECLRDTCVLHEALRCIQIGLLCVQHVPNDRPNMKYVIMMLDSENTLPQPKEPGFLNQRVLIEGQPSSENGITISILSGR*