Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855470 | XP_003624694.1 | 52.469 | 486 | 147 | 10 | 9 | 429 | 11 | 477 | 2.26e-134 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855470 | Q2HVB6 | 52.469 | 486 | 147 | 10 | 9 | 429 | 11 | 477 | 1.08e-134 | 406 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0855470 | Msa1460470 | 0.801119 | 1.046276e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855470 | MtrunA17_Chr7g0253981 | 52.469 | 486 | 147 | 10 | 9 | 429 | 11 | 477 | 2.08e-138 | 406 |
| Msa0855470 | MtrunA17_Chr5g0401031 | 32.024 | 331 | 157 | 9 | 61 | 387 | 64 | 330 | 1.11e-32 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855470 | AT1G28760.1 | 44.643 | 280 | 97 | 7 | 35 | 271 | 32 | 296 | 7.31e-68 | 223 |
| Msa0855470 | AT1G28760.1 | 47.468 | 158 | 59 | 2 | 270 | 406 | 179 | 333 | 1.01e-35 | 137 |
| Msa0855470 | AT5G67610.1 | 31.229 | 301 | 158 | 11 | 14 | 271 | 16 | 310 | 6.36e-31 | 124 |
| Msa0855470 | AT5G67610.1 | 31.818 | 154 | 81 | 4 | 267 | 397 | 192 | 344 | 4.87e-13 | 71.2 |
| Msa0855470 | AT5G67610.2 | 31.629 | 313 | 153 | 12 | 14 | 271 | 16 | 322 | 8.63e-31 | 124 |
| Msa0855470 | AT5G67610.2 | 31.818 | 154 | 81 | 4 | 267 | 397 | 204 | 356 | 4.61e-13 | 71.2 |
| Msa0855470 | AT3G49840.1 | 32.026 | 306 | 152 | 12 | 11 | 271 | 21 | 315 | 2.72e-27 | 113 |
| Msa0855470 | AT3G49840.2 | 32.248 | 307 | 151 | 13 | 11 | 271 | 21 | 316 | 4.37e-27 | 113 |
Find 102 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAGCGCTTTCAAGTTTC+TGG | 0.142536 | 5_4:+48791150 | Msa0855470:CDS |
| AATTCAATTCTTCAGAGTTT+TGG | 0.223809 | 5_4:+48793201 | Msa0855470:CDS |
| GGAACCCAACTGCTAATAAT+TGG | 0.267514 | 5_4:-48791702 | None:intergenic |
| GTATCTCCTTCCTTACTATT+AGG | 0.278382 | 5_4:+48791111 | Msa0855470:CDS |
| GGTTGCTCTTTCTGTACTAC+TGG | 0.292104 | 5_4:+48792711 | Msa0855470:intron |
| AATGGAGGGGTCTTCATAAA+TGG | 0.304549 | 5_4:+48791409 | Msa0855470:CDS |
| AAATGGGCAATGCGCGTTAC+TGG | 0.321526 | 5_4:+48793707 | Msa0855470:CDS |
| ATTGAACTACCATAATAAAA+TGG | 0.322030 | 5_4:-48791723 | None:intergenic |
| GGTTGGTCAGTTTGTGAAAT+GGG | 0.325806 | 5_4:+48792819 | Msa0855470:CDS |
| TTCAGCTAAAGCTTGCTCTA+TGG | 0.332869 | 5_4:-48794575 | None:intergenic |
| ACCTCTTGCAATTGGAGCTT+TGG | 0.333504 | 5_4:+48794064 | Msa0855470:CDS |
| CGCCTTATTAGTCTTGCAAT+TGG | 0.336185 | 5_4:+48791657 | Msa0855470:CDS |
| CGCGTTACTGGAGCTGCTTT+AGG | 0.336657 | 5_4:+48792847 | Msa0855470:CDS |
| CTGGAGCTGCTTTAGGCTAC+TGG | 0.348633 | 5_4:+48792746 | Msa0855470:CDS |
| TGTACTACTGGGTATCATCT+TGG | 0.358173 | 5_4:+48792723 | Msa0855470:CDS |
| TCTTCGATAAAATTGCTTCA+TGG | 0.364076 | 5_4:+48794116 | Msa0855470:CDS |
| TGTACTACTTGGTATCATCT+TGG | 0.366574 | 5_4:+48793595 | Msa0855470:CDS |
| CAAAGTAACATGTAATGAAT+TGG | 0.368836 | 5_4:-48791202 | None:intergenic |
| GACGAGGTTGAGAGAGAAAT+GGG | 0.380849 | 5_4:-48790776 | None:intergenic |
| GAAGGAGATACATCTAAAAC+TGG | 0.381640 | 5_4:-48791099 | None:intergenic |
| GGCTCCAATTATTAGCAGTT+GGG | 0.386329 | 5_4:+48791698 | Msa0855470:CDS |
| ATCCAATTGCAAGACTAATA+AGG | 0.387359 | 5_4:-48791659 | None:intergenic |
| TGACGAGGTTGAGAGAGAAA+TGG | 0.389871 | 5_4:-48790777 | None:intergenic |
| GGGTTGGTCAGTTTGTGAAA+TGG | 0.392239 | 5_4:+48792818 | Msa0855470:CDS |
| CAATTCATTACATGTTACTT+TGG | 0.395185 | 5_4:+48791203 | Msa0855470:CDS |
| ATTGATACACCTCTTGCAAT+TGG | 0.395313 | 5_4:+48794056 | Msa0855470:CDS |
| TATGGTAGTTCAATGGCTAT+AGG | 0.395624 | 5_4:+48791732 | Msa0855470:CDS |
| AATTTACGATCATAGAGAAT+TGG | 0.399637 | 5_4:-48793182 | None:intergenic |
| GGGTTGCTCAGTTTGTGAAA+TGG | 0.409305 | 5_4:+48793690 | Msa0855470:CDS |
| GGTTGCTCAGTTTGTGAAAT+GGG | 0.425437 | 5_4:+48793691 | Msa0855470:CDS |
| GTTGCTCTTTCTGTACTACT+TGG | 0.428228 | 5_4:+48793584 | Msa0855470:CDS |
| TTGTTACCTTTGAGAGTAAC+GGG | 0.433137 | 5_4:-48790850 | None:intergenic |
| CAAGATTGACGGTGAAATAC+CGG | 0.436076 | 5_4:+48791479 | Msa0855470:CDS |
| ATCTTGGCTGGAGCTGCTTT+AGG | 0.440307 | 5_4:+48792739 | Msa0855470:CDS |
| TGGCTCCAATTATTAGCAGT+TGG | 0.447665 | 5_4:+48791697 | Msa0855470:CDS |
| AATGGGCAATGCGCGTTACT+GGG | 0.447852 | 5_4:+48793708 | Msa0855470:CDS |
| CTGGAGCTGCTATAGGCTAC+TGG | 0.452288 | 5_4:+48793618 | Msa0855470:CDS |
| ATTGGAGCTTTGGTCTCTTG+TGG | 0.453059 | 5_4:+48794074 | Msa0855470:CDS |
| AAGATGGCAGTGTGGATGCC+GGG | 0.459320 | 5_4:+48792797 | Msa0855470:CDS |
| AAGATGGCAGTGTGGATGCC+GGG | 0.459320 | 5_4:+48793669 | Msa0855470:CDS |
| AAGCGCGCGGGTGAATTTGA+TGG | 0.460335 | 5_4:+48790738 | None:intergenic |
| GGGGTCTTCATAAATGGATC+TGG | 0.463704 | 5_4:+48791415 | Msa0855470:CDS |
| AATTTACGATCATAGAGTAT+TGG | 0.466939 | 5_4:-48792065 | None:intergenic |
| TCATAGAGAATTGGTGCAAA+AGG | 0.472297 | 5_4:-48793173 | None:intergenic |
| CTATAGGCTACTGGAATGTC+AGG | 0.482183 | 5_4:+48793627 | Msa0855470:CDS |
| TTTGTTATTTCAAAAGAAGA+TGG | 0.483979 | 5_4:+48792781 | Msa0855470:CDS |
| TTTGTTATTTCAAAAGAAGA+TGG | 0.483979 | 5_4:+48793653 | Msa0855470:CDS |
| ATCTTGGCTGGAGCTGCTAT+AGG | 0.484098 | 5_4:+48793611 | Msa0855470:CDS |
| AGCGCGCGGGTGAATTTGAT+GGG | 0.485644 | 5_4:+48790739 | None:intergenic |
| TCATAGAGTATTGGTGCAAA+AGG | 0.486384 | 5_4:-48792056 | None:intergenic |
| CTACTTGGTATCATCTTGGC+TGG | 0.491465 | 5_4:+48793599 | Msa0855470:CDS |
| CTTTAGGCTACTGGACTGTC+AGG | 0.493341 | 5_4:+48792755 | Msa0855470:CDS |
| ATTAGATTGACCTAATAGTA+AGG | 0.496105 | 5_4:-48791121 | None:intergenic |
| GGCAGTGTGGATGCCGGGGT+TGG | 0.496129 | 5_4:+48792802 | Msa0855470:CDS |
| GGGAGGGAATTGTTCATTGT+CGG | 0.503603 | 5_4:-48790830 | None:intergenic |
| AGAGCAAGCTTTAGCTGAAA+GGG | 0.510976 | 5_4:+48794579 | Msa0855470:CDS |
| CTACTGGGTATCATCTTGGC+TGG | 0.511645 | 5_4:+48792727 | Msa0855470:CDS |
| GAAGATGGCAGTGTGGATGC+CGG | 0.514872 | 5_4:+48792796 | Msa0855470:CDS |
| GAAGATGGCAGTGTGGATGC+CGG | 0.514872 | 5_4:+48793668 | Msa0855470:CDS |
| TCAACATATCTAGTTTCATA+AGG | 0.515189 | 5_4:-48791453 | None:intergenic |
| GTTGGTCAGTTTGTGAAATG+GGG | 0.520998 | 5_4:+48792820 | Msa0855470:CDS |
| AAAGGTTCATTAAGGAAGAG+TGG | 0.522053 | 5_4:+48794533 | Msa0855470:intron |
| CGATAAAATTGCTTCATGGA+TGG | 0.523892 | 5_4:+48794120 | Msa0855470:CDS |
| TTGGTCAGTTTGTGAAATGG+GGG | 0.525508 | 5_4:+48792821 | Msa0855470:CDS |
| TTCCCTCCCGTTACTCTCAA+AGG | 0.527324 | 5_4:+48790844 | Msa0855470:CDS |
| TTGGTGCAAAAGGAGTAATT+CGG | 0.531748 | 5_4:-48793163 | None:intergenic |
| TGGATTGACGCTGATGCTGT+TGG | 0.532027 | 5_4:+48791677 | Msa0855470:CDS |
| TAGAGCAAGCTTTAGCTGAA+AGG | 0.538223 | 5_4:+48794578 | Msa0855470:CDS |
| TTGGTGCAAAAGGAGTAATT+CGG | 0.538568 | 5_4:-48792046 | None:intergenic |
| GTTGTTACCTTTGAGAGTAA+CGG | 0.540251 | 5_4:-48790851 | None:intergenic |
| AAGGTTCATTAAGGAAGAGT+GGG | 0.543890 | 5_4:+48794534 | Msa0855470:intron |
| TATGTTGATGTCAAGATTGA+CGG | 0.548855 | 5_4:+48791468 | Msa0855470:CDS |
| TTGTGCAGGAATAATACTCT+TGG | 0.549682 | 5_4:+48791363 | Msa0855470:intron |
| GTTGCTCTTTCTGTACTACT+GGG | 0.551932 | 5_4:+48792712 | Msa0855470:CDS |
| GATTGACCTAATAGTAAGGA+AGG | 0.577185 | 5_4:-48791117 | None:intergenic |
| AGTGCAACTGTGACTGAACC+CGG | 0.582009 | 5_4:-48791498 | None:intergenic |
| AAGATTGACGGTGAAATACC+GGG | 0.590615 | 5_4:+48791480 | Msa0855470:CDS |
| TTTCACAAACTGACCAACCC+CGG | 0.591110 | 5_4:-48792815 | None:intergenic |
| AGTGTGAAAATAACGAATGG+AGG | 0.600105 | 5_4:+48791394 | Msa0855470:CDS |
| GTGTGAAAATAACGAATGGA+GGG | 0.600359 | 5_4:+48791395 | Msa0855470:CDS |
| AAGAGTGGGATGGCTTCATG+AGG | 0.600832 | 5_4:+48794548 | Msa0855470:CDS |
| TTTCACAAACTGAGCAACCC+CGG | 0.604583 | 5_4:-48793687 | None:intergenic |
| ATGGGCAATGCGCGTTACTG+GGG | 0.605892 | 5_4:+48793709 | Msa0855470:CDS |
| TACCTTTGAGAGTAACGGGA+GGG | 0.606197 | 5_4:-48790846 | None:intergenic |
| GGTATCTCAAGATTCAAGCT+CGG | 0.614150 | 5_4:+48791171 | Msa0855470:CDS |
| TTCATTAAGGAAGAGTGGGA+TGG | 0.617053 | 5_4:+48794538 | Msa0855470:CDS |
| ACCAAAGCTCCAATTGCAAG+AGG | 0.617168 | 5_4:-48794065 | None:intergenic |
| GTCACAGTTGCACTTGACGA+AGG | 0.629126 | 5_4:+48791507 | Msa0855470:CDS |
| GTAGATTGTAAGAAGCGCGC+GGG | 0.633998 | 5_4:+48790726 | None:intergenic |
| TGTGAAAATAACGAATGGAG+GGG | 0.647246 | 5_4:+48791396 | Msa0855470:CDS |
| AATGAACACCTGCAAAACAA+AGG | 0.647279 | 5_4:-48793735 | None:intergenic |
| GTCAGTGTGAAAATAACGAA+TGG | 0.648823 | 5_4:+48791391 | Msa0855470:CDS |
| GCGCGCGGGTGAATTTGATG+GGG | 0.660087 | 5_4:+48790740 | Msa0855470:exon |
| AGAGTGGGATGGCTTCATGA+GGG | 0.668572 | 5_4:+48794549 | Msa0855470:CDS |
| TTCAAAAGAAGATGGCAGTG+TGG | 0.670624 | 5_4:+48792789 | Msa0855470:CDS |
| TTCAAAAGAAGATGGCAGTG+TGG | 0.670624 | 5_4:+48793661 | Msa0855470:CDS |
| AGTAGATTGTAAGAAGCGCG+CGG | 0.676795 | 5_4:+48790725 | None:intergenic |
| AGATGGCAGTGTGGATGCCG+GGG | 0.677423 | 5_4:+48792798 | Msa0855470:CDS |
| AGATGGCAGTGTGGATGCCG+GGG | 0.677423 | 5_4:+48793670 | Msa0855470:CDS |
| GCAGGAATAATACTCTTGGA+TGG | 0.680449 | 5_4:+48791367 | Msa0855470:intron |
| AGAGAGTCAAGAAAATGACG+AGG | 0.741350 | 5_4:-48790792 | None:intergenic |
| TTACCTTTGAGAGTAACGGG+AGG | 0.749855 | 5_4:-48790847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTATGTAATTTTTT+TGG | - | chr5_4:48791246-48791265 | None:intergenic | 10.0% |
| !!! | TATTTTTCATCTTTAAATTA+CGG | + | chr5_4:48792205-48792224 | Msa0855470:intron | 10.0% |
| !!! | GTATATAATAATTTAATTTG+TGG | + | chr5_4:48792511-48792530 | Msa0855470:intron | 10.0% |
| !!! | GTATATAATAATTTAATTTG+TGG | + | chr5_4:48792511-48792530 | Msa0855470:intron | 10.0% |
| !! | AATAAATAAAGAAAATGATT+TGG | - | chr5_4:48793975-48793994 | None:intergenic | 10.0% |
| !! | GATGATTAATATAATTTAAA+TGG | + | chr5_4:48794226-48794245 | Msa0855470:intron | 10.0% |
| !!! | TATAATTTAAATGGTTTTAA+TGG | + | chr5_4:48794235-48794254 | Msa0855470:intron | 10.0% |
| !! | TATATTATATAAAAATGGAA+AGG | - | chr5_4:48794407-48794426 | None:intergenic | 10.0% |
| !!! | TTTCTAAAATAAATTAAGTG+TGG | - | chr5_4:48792302-48792321 | None:intergenic | 15.0% |
| !! | AAATTATTATATACTGAAAG+AGG | - | chr5_4:48792505-48792524 | None:intergenic | 15.0% |
| !! | TGTCTATTACAATTATAATA+CGG | + | chr5_4:48793278-48793297 | Msa0855470:intron | 15.0% |
| !!! | TTGCAATTTTTTTTTTTTGA+AGG | - | chr5_4:48794262-48794281 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATTGCAACTTA+TGG | + | chr5_4:48794266-48794285 | Msa0855470:intron | 15.0% |
| !! | GAAAATTCGAAAATTGAAAA+GGG | - | chr5_4:48790920-48790939 | None:intergenic | 20.0% |
| !! | AGAAAATTCGAAAATTGAAA+AGG | - | chr5_4:48790921-48790940 | None:intergenic | 20.0% |
| !! | ATTGAACTACCATAATAAAA+TGG | - | chr5_4:48791726-48791745 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGGTAGTTCAA+TGG | + | chr5_4:48791725-48791744 | Msa0855470:CDS | 20.0% |
| !!! | AGTTATAATCATTCTTTTTC+AGG | + | chr5_4:48791767-48791786 | Msa0855470:CDS | 20.0% |
| !! | GAAATATGTGTATAATACAA+AGG | - | chr5_4:48791816-48791835 | None:intergenic | 20.0% |
| !!! | TACCTTTCTATTTATCTTTT+AGG | + | chr5_4:48792139-48792158 | Msa0855470:intron | 20.0% |
| !!! | ACCTTTCTATTTATCTTTTA+GGG | + | chr5_4:48792140-48792159 | Msa0855470:intron | 20.0% |
| !! | TTATAATTGTAAGACACTAA+GGG | - | chr5_4:48792406-48792425 | None:intergenic | 20.0% |
| !! | ATTATAATTGTAAGACACTA+AGG | - | chr5_4:48792407-48792426 | None:intergenic | 20.0% |
| !! | AGTGTCTTACAATTATAATA+CGG | + | chr5_4:48792408-48792427 | Msa0855470:intron | 20.0% |
| !! | GTCTTTCATCATTTATAATT+TGG | + | chr5_4:48792635-48792654 | Msa0855470:intron | 20.0% |
| !!! | TTTGTTATTTCAAAAGAAGA+TGG | + | chr5_4:48792781-48792800 | Msa0855470:CDS | 20.0% |
| !!! | AGTTATAATCATTCTTTTTC+AGG | + | chr5_4:48791767-48791786 | Msa0855470:CDS | 20.0% |
| !! | GAAATATGTGTATAATACAA+AGG | - | chr5_4:48791816-48791835 | None:intergenic | 20.0% |
| !! | ACACTAAAACATAAATAGAA+AGG | - | chr5_4:48793261-48793280 | None:intergenic | 20.0% |
| !! | GTCTTTCATCATTTATAATT+TGG | + | chr5_4:48792635-48792654 | Msa0855470:intron | 20.0% |
| !!! | TTTGTTATTTCAAAAGAAGA+TGG | + | chr5_4:48792781-48792800 | Msa0855470:CDS | 20.0% |
| !! | AAAAAAGTCAGAATAAATAG+AGG | - | chr5_4:48794017-48794036 | None:intergenic | 20.0% |
| !! | CATTGTTGAATAATAAACAA+AGG | - | chr5_4:48794470-48794489 | None:intergenic | 20.0% |
| !! | TTCTCTTATTCAATTTTCCT+AGG | + | chr5_4:48790887-48790906 | Msa0855470:intron | 25.0% |
| !! | TCTCTTATTCAATTTTCCTA+GGG | + | chr5_4:48790888-48790907 | Msa0855470:intron | 25.0% |
| ! | ATTAGATTGACCTAATAGTA+AGG | - | chr5_4:48791124-48791143 | None:intergenic | 25.0% |
| ! | CAAAGTAACATGTAATGAAT+TGG | - | chr5_4:48791205-48791224 | None:intergenic | 25.0% |
| !! | CAATTCATTACATGTTACTT+TGG | + | chr5_4:48791203-48791222 | Msa0855470:CDS | 25.0% |
| !!! | TTTTTTGGAATCACAAAAGA+TGG | - | chr5_4:48791231-48791250 | None:intergenic | 25.0% |
| !!! | AAATCAAGCTTTGTTTTCAT+AGG | + | chr5_4:48791262-48791281 | Msa0855470:CDS | 25.0% |
| ! | CTTATTTATAATGTTTGTGC+AGG | + | chr5_4:48791349-48791368 | Msa0855470:intron | 25.0% |
| !! | TCAACATATCTAGTTTCATA+AGG | - | chr5_4:48791456-48791475 | None:intergenic | 25.0% |
| !!! | CTGTTATTTTCTTGAACTTT+CGG | + | chr5_4:48791587-48791606 | Msa0855470:intron | 25.0% |
| ! | AATTTACGATCATAGAGTAT+TGG | - | chr5_4:48792068-48792087 | None:intergenic | 25.0% |
| !! | AATTCAATTCTTCAGAGTTT+TGG | + | chr5_4:48792084-48792103 | Msa0855470:intron | 25.0% |
| !! | ATTCAATTCTTCAGAGTTTT+GGG | + | chr5_4:48792085-48792104 | Msa0855470:intron | 25.0% |
| ! | AATTTACGATCATAGAGAAT+TGG | - | chr5_4:48793185-48793204 | None:intergenic | 25.0% |
| !! | AATTCAATTCTTCAGAGTTT+TGG | + | chr5_4:48792084-48792103 | Msa0855470:intron | 25.0% |
| !! | ATTCAATTCTTCAGAGTTTT+GGG | + | chr5_4:48792085-48792104 | Msa0855470:intron | 25.0% |
| !!! | TTATAATTTGGCTTGTTTAC+CGG | + | chr5_4:48793519-48793538 | Msa0855470:intron | 25.0% |
| ! | TAGTTACAATTGGCAATATA+TGG | - | chr5_4:48793899-48793918 | None:intergenic | 25.0% |
| ! | TTAATCATCTATTACTTCCT+TGG | - | chr5_4:48794215-48794234 | None:intergenic | 25.0% |
| !!! | AAAGCACTGAATCTTATTAT+AGG | + | chr5_4:48794336-48794355 | Msa0855470:intron | 25.0% |
| ! | CTGAATCTTATTATAGGAAA+TGG | + | chr5_4:48794342-48794361 | Msa0855470:intron | 25.0% |
| ! | AATGGAAAAAAGGTTCATTA+AGG | + | chr5_4:48794525-48794544 | Msa0855470:intron | 25.0% |
| ATAAGAGAATCAGAAGAAGA+GGG | - | chr5_4:48790876-48790895 | None:intergenic | 30.0% | |
| AATAAGAGAATCAGAAGAAG+AGG | - | chr5_4:48790877-48790896 | None:intergenic | 30.0% | |
| TGTAATCTATACATCGCATA+TGG | + | chr5_4:48790950-48790969 | Msa0855470:intron | 30.0% | |
| ATTAAGCATACAGCTACAAA+AGG | - | chr5_4:48791003-48791022 | None:intergenic | 30.0% | |
| TGACAAAATTCACTAGAAGT+CGG | - | chr5_4:48791316-48791335 | None:intergenic | 30.0% | |
| TATGTTGATGTCAAGATTGA+CGG | + | chr5_4:48791468-48791487 | Msa0855470:CDS | 30.0% | |
| ATCCAATTGCAAGACTAATA+AGG | - | chr5_4:48791662-48791681 | None:intergenic | 30.0% | |
| ! | AGTTGGGTTCCATTTTATTA+TGG | + | chr5_4:48791714-48791733 | Msa0855470:CDS | 30.0% |
| GCATAACAGTCAGAAAAAAT+TGG | - | chr5_4:48791857-48791876 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCTGACTGTTATGC+TGG | + | chr5_4:48791857-48791876 | Msa0855470:intron | 30.0% |
| !!! | TTTTTTCTGACTGTTATGCT+GGG | + | chr5_4:48791858-48791877 | Msa0855470:intron | 30.0% |
| !!! | AAGACATTTTTTCTTCCAGT+TGG | - | chr5_4:48791897-48791916 | None:intergenic | 30.0% |
| ! | GTCTTTTATCTTACCATGTA+TGG | + | chr5_4:48791912-48791931 | Msa0855470:intron | 30.0% |
| TATTGTGATATGTTTCAGCT+TGG | + | chr5_4:48792021-48792040 | Msa0855470:intron | 30.0% | |
| GCCCTAAAAGATAAATAGAA+AGG | - | chr5_4:48792144-48792163 | None:intergenic | 30.0% | |
| ! | TTATAATACGGTTTTCGCTT+TGG | + | chr5_4:48792420-48792439 | Msa0855470:intron | 30.0% |
| ! | TATAATACGGTTTTCGCTTT+GGG | + | chr5_4:48792421-48792440 | Msa0855470:intron | 30.0% |
| !!! | AGAATGCATTTTTAGCAGAT+GGG | - | chr5_4:48792610-48792629 | None:intergenic | 30.0% |
| ! | ACTTTACCTCTATGATTTGT+AGG | + | chr5_4:48792690-48792709 | Msa0855470:intron | 30.0% |
| GCATAACAGTCAGAAAAAAT+TGG | - | chr5_4:48791857-48791876 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCTGACTGTTATGC+AGG | + | chr5_4:48791857-48791876 | Msa0855470:intron | 30.0% |
| !!! | TTTTTTCTGACTGTTATGCA+GGG | + | chr5_4:48792975-48792994 | Msa0855470:intron | 30.0% |
| !!! | AAGACATTTTTTCTTCCAGT+TGG | - | chr5_4:48791897-48791916 | None:intergenic | 30.0% |
| ! | GTCTTTTATCTTACCATGTA+TGG | + | chr5_4:48791912-48791931 | Msa0855470:intron | 30.0% |
| ! | TTATAATACGGTTTTCGCTT+TGG | + | chr5_4:48792420-48792439 | Msa0855470:intron | 30.0% |
| ! | TATAATACGGTTTTCGCTTT+GGG | + | chr5_4:48792421-48792440 | Msa0855470:intron | 30.0% |
| !!! | TAGAATGCATTTTTAGCAGA+CGG | - | chr5_4:48793483-48793502 | None:intergenic | 30.0% |
| TTTCATGAAGAATTGATGTC+CGG | - | chr5_4:48792669-48792688 | None:intergenic | 30.0% | |
| ATTGCCAATTGTAACTATTC+TGG | + | chr5_4:48793902-48793921 | Msa0855470:intron | 30.0% | |
| ACTTCCAGAATAGTTACAAT+TGG | - | chr5_4:48793909-48793928 | None:intergenic | 30.0% | |
| TCTTCGATAAAATTGCTTCA+TGG | + | chr5_4:48794116-48794135 | Msa0855470:CDS | 30.0% | |
| TAATACTTCACTTTAAGCAG+TGG | + | chr5_4:48794170-48794189 | Msa0855470:intron | 30.0% | |
| TTTGCTTAGTTATTTGTCCA+AGG | + | chr5_4:48794195-48794214 | Msa0855470:intron | 30.0% | |
| ! | TTGTTACCTTTGAGAGTAAC+GGG | - | chr5_4:48790853-48790872 | None:intergenic | 35.0% |
| ! | GTTGTTACCTTTGAGAGTAA+CGG | - | chr5_4:48790854-48790873 | None:intergenic | 35.0% |
| TTGTAGCTGTATGCTTAATG+AGG | + | chr5_4:48791004-48791023 | Msa0855470:intron | 35.0% | |
| ! | GAAGGAGATACATCTAAAAC+TGG | - | chr5_4:48791102-48791121 | None:intergenic | 35.0% |
| GTATCTCCTTCCTTACTATT+AGG | + | chr5_4:48791111-48791130 | Msa0855470:CDS | 35.0% | |
| GATTGACCTAATAGTAAGGA+AGG | - | chr5_4:48791120-48791139 | None:intergenic | 35.0% | |
| TTGTGCAGGAATAATACTCT+TGG | + | chr5_4:48791363-48791382 | Msa0855470:intron | 35.0% | |
| GTCAGTGTGAAAATAACGAA+TGG | + | chr5_4:48791391-48791410 | Msa0855470:CDS | 35.0% | |
| AGTGTGAAAATAACGAATGG+AGG | + | chr5_4:48791394-48791413 | Msa0855470:CDS | 35.0% | |
| GTGTGAAAATAACGAATGGA+GGG | + | chr5_4:48791395-48791414 | Msa0855470:CDS | 35.0% | |
| TGTGAAAATAACGAATGGAG+GGG | + | chr5_4:48791396-48791415 | Msa0855470:CDS | 35.0% | |
| TATGGTAGTTCAATGGCTAT+AGG | + | chr5_4:48791732-48791751 | Msa0855470:CDS | 35.0% | |
| TTGGTGCAAAAGGAGTAATT+CGG | - | chr5_4:48792049-48792068 | None:intergenic | 35.0% | |
| !! | TCATAGAGTATTGGTGCAAA+AGG | - | chr5_4:48792059-48792078 | None:intergenic | 35.0% |
| !!! | TTTATCTTTTAGGGCGTGTT+TGG | + | chr5_4:48792149-48792168 | Msa0855470:intron | 35.0% |
| AGTACACGAGTAGAATTGTA+GGG | - | chr5_4:48792543-48792562 | None:intergenic | 35.0% | |
| ! | TTTTAGCAGATGGGCAAATA+TGG | - | chr5_4:48792601-48792620 | None:intergenic | 35.0% |
| !!! | GAGAATGCATTTTTAGCAGA+TGG | - | chr5_4:48792611-48792630 | None:intergenic | 35.0% |
| TTGGTGCAAAAGGAGTAATT+CGG | - | chr5_4:48792049-48792068 | None:intergenic | 35.0% | |
| TCATAGAGAATTGGTGCAAA+AGG | - | chr5_4:48793176-48793195 | None:intergenic | 35.0% | |
| TCAGCAGAAAATAGATGCTA+AGG | + | chr5_4:48793336-48793355 | Msa0855470:intron | 35.0% | |
| AGTACACGAGTAGAATTGTA+GGG | - | chr5_4:48792543-48792562 | None:intergenic | 35.0% | |
| !!! | AGAATGCATTTTTAGCAGAC+GGG | - | chr5_4:48793482-48793501 | None:intergenic | 35.0% |
| TGTACTACTTGGTATCATCT+TGG | + | chr5_4:48793595-48793614 | Msa0855470:CDS | 35.0% | |
| AATGAACACCTGCAAAACAA+AGG | - | chr5_4:48793738-48793757 | None:intergenic | 35.0% | |
| ! | CATATGTGACAGGTATTGTT+AGG | + | chr5_4:48793788-48793807 | Msa0855470:intron | 35.0% |
| TTTGATGAAGTTGCACAGTA+TGG | + | chr5_4:48793948-48793967 | Msa0855470:intron | 35.0% | |
| ATTGATACACCTCTTGCAAT+TGG | + | chr5_4:48794056-48794075 | Msa0855470:CDS | 35.0% | |
| CGATAAAATTGCTTCATGGA+TGG | + | chr5_4:48794120-48794139 | Msa0855470:CDS | 35.0% | |
| CAAGATCAGCAATGGAAAAA+AGG | + | chr5_4:48794515-48794534 | Msa0855470:intron | 35.0% | |
| AAAGGTTCATTAAGGAAGAG+TGG | + | chr5_4:48794533-48794552 | Msa0855470:intron | 35.0% | |
| AAGGTTCATTAAGGAAGAGT+GGG | + | chr5_4:48794534-48794553 | Msa0855470:intron | 35.0% | |
| AGAGAGTCAAGAAAATGACG+AGG | - | chr5_4:48790795-48790814 | None:intergenic | 40.0% | |
| TTGAAAAGGGAAGAAACCCT+AGG | - | chr5_4:48790907-48790926 | None:intergenic | 40.0% | |
| GAACGAAGATTGCAAGAACA+AGG | - | chr5_4:48791049-48791068 | None:intergenic | 40.0% | |
| TCTTCGTTCATTACAACTGC+AGG | + | chr5_4:48791060-48791079 | Msa0855470:intron | 40.0% | |
| GGTATCTCAAGATTCAAGCT+CGG | + | chr5_4:48791171-48791190 | Msa0855470:CDS | 40.0% | |
| GCAGGAATAATACTCTTGGA+TGG | + | chr5_4:48791367-48791386 | Msa0855470:intron | 40.0% | |
| AATGGAGGGGTCTTCATAAA+TGG | + | chr5_4:48791409-48791428 | Msa0855470:CDS | 40.0% | |
| CAAGATTGACGGTGAAATAC+CGG | + | chr5_4:48791479-48791498 | Msa0855470:CDS | 40.0% | |
| AAGATTGACGGTGAAATACC+GGG | + | chr5_4:48791480-48791499 | Msa0855470:CDS | 40.0% | |
| ! | AGGTTTGTTTCTTCCATGTC+AGG | + | chr5_4:48791527-48791546 | Msa0855470:intron | 40.0% |
| TGTTTCTTCCATGTCAGGAA+AGG | + | chr5_4:48791532-48791551 | Msa0855470:intron | 40.0% | |
| GTTTCTTCCATGTCAGGAAA+GGG | + | chr5_4:48791533-48791552 | Msa0855470:intron | 40.0% | |
| TTTCTTCCATGTCAGGAAAG+GGG | + | chr5_4:48791534-48791553 | Msa0855470:intron | 40.0% | |
| !! | CGCCTTATTAGTCTTGCAAT+TGG | + | chr5_4:48791657-48791676 | Msa0855470:CDS | 40.0% |
| TGGCTCCAATTATTAGCAGT+TGG | + | chr5_4:48791697-48791716 | Msa0855470:CDS | 40.0% | |
| GGCTCCAATTATTAGCAGTT+GGG | + | chr5_4:48791698-48791717 | Msa0855470:CDS | 40.0% | |
| GGAACCCAACTGCTAATAAT+TGG | - | chr5_4:48791705-48791724 | None:intergenic | 40.0% | |
| GGCATGAAATTATTGCCAAC+TGG | + | chr5_4:48791879-48791898 | Msa0855470:intron | 40.0% | |
| !!! | TTTTAGGGCGTGTTTGGATT+GGG | + | chr5_4:48792155-48792174 | Msa0855470:intron | 40.0% |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr5_4:48792383-48792402 | None:intergenic | 40.0% | |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | - | chr5_4:48792389-48792408 | None:intergenic | 40.0% |
| ! | TAAGACACTAAGGGTGTGTT+TGG | - | chr5_4:48792397-48792416 | None:intergenic | 40.0% |
| TCAGCAGAAAATAGCTGCTA+AGG | + | chr5_4:48792464-48792483 | Msa0855470:intron | 40.0% | |
| CAGTACACGAGTAGAATTGT+AGG | - | chr5_4:48792544-48792563 | None:intergenic | 40.0% | |
| GAGCAACCTACAAATCATAG+AGG | - | chr5_4:48792699-48792718 | None:intergenic | 40.0% | |
| GTTGCTCTTTCTGTACTACT+GGG | + | chr5_4:48792712-48792731 | Msa0855470:CDS | 40.0% | |
| TGTACTACTGGGTATCATCT+TGG | + | chr5_4:48792723-48792742 | Msa0855470:CDS | 40.0% | |
| TTCAAAAGAAGATGGCAGTG+TGG | + | chr5_4:48792789-48792808 | Msa0855470:CDS | 40.0% | |
| ! | GGTTGGTCAGTTTGTGAAAT+GGG | + | chr5_4:48792819-48792838 | Msa0855470:CDS | 40.0% |
| GTTGGTCAGTTTGTGAAATG+GGG | + | chr5_4:48792820-48792839 | Msa0855470:CDS | 40.0% | |
| TTGGTCAGTTTGTGAAATGG+GGG | + | chr5_4:48792821-48792840 | Msa0855470:CDS | 40.0% | |
| GGCATGAAATTATTGCCAAC+TGG | + | chr5_4:48791879-48791898 | Msa0855470:intron | 40.0% | |
| ACTCATTGCTGATCCATACA+TGG | - | chr5_4:48793045-48793064 | None:intergenic | 40.0% | |
| GCAGAAAATAGATGCTAAGG+AGG | + | chr5_4:48793339-48793358 | Msa0855470:intron | 40.0% | |
| CAGTACACGAGTAGAATTGT+AGG | - | chr5_4:48792544-48792563 | None:intergenic | 40.0% | |
| ! | TTTTAGCAGACGGGCAAATA+TGG | - | chr5_4:48793473-48793492 | None:intergenic | 40.0% |
| ! | ACTTTACCTCTGTGATTTGC+AGG | + | chr5_4:48793562-48793581 | Msa0855470:intron | 40.0% |
| GTTGCTCTTTCTGTACTACT+TGG | + | chr5_4:48792712-48792731 | Msa0855470:CDS | 40.0% | |
| TTCAAAAGAAGATGGCAGTG+TGG | + | chr5_4:48792789-48792808 | Msa0855470:CDS | 40.0% | |
| GGTTGCTCAGTTTGTGAAAT+GGG | + | chr5_4:48793691-48793710 | Msa0855470:CDS | 40.0% | |
| CAATACCTGTCACATATGAC+AGG | - | chr5_4:48793786-48793805 | None:intergenic | 40.0% | |
| ! | ACAGGTATTGTTAGGTCACT+TGG | + | chr5_4:48793796-48793815 | Msa0855470:intron | 40.0% |
| ! | ATTCTGGAAGTTGCATAGCT+TGG | + | chr5_4:48793918-48793937 | Msa0855470:intron | 40.0% |
| ACATTGCACAAGATCAGCAA+TGG | + | chr5_4:48794507-48794526 | Msa0855470:intron | 40.0% | |
| TTCATTAAGGAAGAGTGGGA+TGG | + | chr5_4:48794538-48794557 | Msa0855470:CDS | 40.0% | |
| ! | TTCAGCTAAAGCTTGCTCTA+TGG | - | chr5_4:48794578-48794597 | None:intergenic | 40.0% |
| ! | TAGAGCAAGCTTTAGCTGAA+AGG | + | chr5_4:48794578-48794597 | Msa0855470:CDS | 40.0% |
| ! | AGAGCAAGCTTTAGCTGAAA+GGG | + | chr5_4:48794579-48794598 | Msa0855470:CDS | 40.0% |
| GACGAGGTTGAGAGAGAAAT+GGG | - | chr5_4:48790779-48790798 | None:intergenic | 45.0% | |
| TGACGAGGTTGAGAGAGAAA+TGG | - | chr5_4:48790780-48790799 | None:intergenic | 45.0% | |
| GGGAGGGAATTGTTCATTGT+CGG | - | chr5_4:48790833-48790852 | None:intergenic | 45.0% | |
| ! | TACCTTTGAGAGTAACGGGA+GGG | - | chr5_4:48790849-48790868 | None:intergenic | 45.0% |
| ! | TTACCTTTGAGAGTAACGGG+AGG | - | chr5_4:48790850-48790869 | None:intergenic | 45.0% |
| !! | TGTGAGCGCTTTCAAGTTTC+TGG | + | chr5_4:48791150-48791169 | Msa0855470:CDS | 45.0% |
| GGGGTCTTCATAAATGGATC+TGG | + | chr5_4:48791415-48791434 | Msa0855470:CDS | 45.0% | |
| TTCTTTCCCCTTTCCTGACA+TGG | - | chr5_4:48791543-48791562 | None:intergenic | 45.0% | |
| ACTCATCGCTGATCCATACA+TGG | - | chr5_4:48791928-48791947 | None:intergenic | 45.0% | |
| !!! | CTTTTAGGGCGTGTTTGGAT+TGG | + | chr5_4:48792154-48792173 | Msa0855470:intron | 45.0% |
| ! | GTTTGGATTGGGTTTAGGAG+TGG | + | chr5_4:48792166-48792185 | Msa0855470:intron | 45.0% |
| GATTGGGTTTAGGAGTGGAA+GGG | + | chr5_4:48792171-48792190 | Msa0855470:intron | 45.0% | |
| TTTGGATTGAGGGTTTAGGC+GGG | - | chr5_4:48792379-48792398 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+CGG | - | chr5_4:48792380-48792399 | None:intergenic | 45.0% | |
| ! | CTAAGGGTGTGTTTGGATTG+AGG | - | chr5_4:48792390-48792409 | None:intergenic | 45.0% |
| GCAGAAAATAGCTGCTAAGG+AGG | + | chr5_4:48792467-48792486 | Msa0855470:intron | 45.0% | |
| ATATGGCCAGCAATCATCAC+CGG | - | chr5_4:48792584-48792603 | None:intergenic | 45.0% | |
| GGTTGCTCTTTCTGTACTAC+TGG | + | chr5_4:48792711-48792730 | Msa0855470:intron | 45.0% | |
| TTTCACAAACTGACCAACCC+CGG | - | chr5_4:48792818-48792837 | None:intergenic | 45.0% | |
| !! | GGGTTGGTCAGTTTGTGAAA+TGG | + | chr5_4:48792818-48792837 | Msa0855470:CDS | 45.0% |
| CTACTTGGTATCATCTTGGC+TGG | + | chr5_4:48793599-48793618 | Msa0855470:CDS | 45.0% | |
| CTATAGGCTACTGGAATGTC+AGG | + | chr5_4:48793627-48793646 | Msa0855470:CDS | 45.0% | |
| TTTCACAAACTGAGCAACCC+CGG | - | chr5_4:48793690-48793709 | None:intergenic | 45.0% | |
| GGGTTGCTCAGTTTGTGAAA+TGG | + | chr5_4:48793690-48793709 | Msa0855470:CDS | 45.0% | |
| CTAGTCCTGTCATATGTGAC+AGG | + | chr5_4:48793778-48793797 | Msa0855470:intron | 45.0% | |
| ACCTCTTGCAATTGGAGCTT+TGG | + | chr5_4:48794064-48794083 | Msa0855470:CDS | 45.0% | |
| ACCAAAGCTCCAATTGCAAG+AGG | - | chr5_4:48794068-48794087 | None:intergenic | 45.0% | |
| ! | ATTGGAGCTTTGGTCTCTTG+TGG | + | chr5_4:48794074-48794093 | Msa0855470:CDS | 45.0% |
| !! | GTAAATATATTATATAAAAA+TGG | - | chr5_4:48794412-48794431 | None:intergenic | 5.0% |
| TTCCCTCCCGTTACTCTCAA+AGG | + | chr5_4:48790844-48790863 | Msa0855470:CDS | 50.0% | |
| AGTGCAACTGTGACTGAACC+CGG | - | chr5_4:48791501-48791520 | None:intergenic | 50.0% | |
| GTCACAGTTGCACTTGACGA+AGG | + | chr5_4:48791507-48791526 | Msa0855470:CDS | 50.0% | |
| CGCAATTGCTGAAAGTCTGC+AGG | - | chr5_4:48791639-48791658 | None:intergenic | 50.0% | |
| TGGATTGACGCTGATGCTGT+TGG | + | chr5_4:48791677-48791696 | Msa0855470:CDS | 50.0% | |
| ! | GGCGTGTTTGGATTGGGTTT+AGG | + | chr5_4:48792161-48792180 | Msa0855470:intron | 50.0% |
| GGATTGGGTTTAGGAGTGGA+AGG | + | chr5_4:48792170-48792189 | Msa0855470:intron | 50.0% | |
| TTGGATTGAGGGTTTAGGCG+GGG | - | chr5_4:48792378-48792397 | None:intergenic | 50.0% | |
| TGCTACCCTGATGTTTGCTC+CGG | + | chr5_4:48792562-48792581 | Msa0855470:intron | 50.0% | |
| CATCACCGGAGCAAACATCA+GGG | - | chr5_4:48792570-48792589 | None:intergenic | 50.0% | |
| TCATCACCGGAGCAAACATC+AGG | - | chr5_4:48792571-48792590 | None:intergenic | 50.0% | |
| TTTGCTCCGGTGATGATTGC+TGG | + | chr5_4:48792575-48792594 | Msa0855470:intron | 50.0% | |
| CTACTGGGTATCATCTTGGC+TGG | + | chr5_4:48792727-48792746 | Msa0855470:CDS | 50.0% | |
| ! | ATCTTGGCTGGAGCTGCTTT+AGG | + | chr5_4:48792739-48792758 | Msa0855470:CDS | 50.0% |
| CTTTAGGCTACTGGACTGTC+AGG | + | chr5_4:48792755-48792774 | Msa0855470:CDS | 50.0% | |
| CGTCACAGGAGCAAACATCA+GGG | - | chr5_4:48793442-48793461 | None:intergenic | 50.0% | |
| TCGTCACAGGAGCAAACATC+AGG | - | chr5_4:48793443-48793462 | None:intergenic | 50.0% | |
| TTTGCTCCTGTGACGATTGC+TGG | + | chr5_4:48793447-48793466 | Msa0855470:intron | 50.0% | |
| ATATGGCCAGCAATCGTCAC+AGG | - | chr5_4:48793456-48793475 | None:intergenic | 50.0% | |
| GAGCAACCTGCAAATCACAG+AGG | - | chr5_4:48793571-48793590 | None:intergenic | 50.0% | |
| ATCTTGGCTGGAGCTGCTAT+AGG | + | chr5_4:48793611-48793630 | Msa0855470:CDS | 50.0% | |
| AAATGGGCAATGCGCGTTAC+TGG | + | chr5_4:48793707-48793726 | Msa0855470:CDS | 50.0% | |
| AATGGGCAATGCGCGTTACT+GGG | + | chr5_4:48793708-48793727 | Msa0855470:CDS | 50.0% | |
| !!! | TGGGGCTACCTTTGTTTTGC+AGG | + | chr5_4:48793727-48793746 | Msa0855470:CDS | 50.0% |
| AAGAGTGGGATGGCTTCATG+AGG | + | chr5_4:48794548-48794567 | Msa0855470:CDS | 50.0% | |
| AGAGTGGGATGGCTTCATGA+GGG | + | chr5_4:48794549-48794568 | Msa0855470:CDS | 50.0% | |
| TGGGTTTAGGAGTGGAAGGG+AGG | + | chr5_4:48792174-48792193 | Msa0855470:intron | 55.0% | |
| GGGTTTAGGAGTGGAAGGGA+GGG | + | chr5_4:48792175-48792194 | Msa0855470:intron | 55.0% | |
| GGTTTAGGAGTGGAAGGGAG+GGG | + | chr5_4:48792176-48792195 | Msa0855470:intron | 55.0% | |
| TTGAGGGTTTAGGCGGGGAA+GGG | - | chr5_4:48792373-48792392 | None:intergenic | 55.0% | |
| ATTGAGGGTTTAGGCGGGGA+AGG | - | chr5_4:48792374-48792393 | None:intergenic | 55.0% | |
| ! | CTGGAGCTGCTTTAGGCTAC+TGG | + | chr5_4:48792746-48792765 | Msa0855470:CDS | 55.0% |
| GAAGATGGCAGTGTGGATGC+CGG | + | chr5_4:48792796-48792815 | Msa0855470:CDS | 55.0% | |
| AAGATGGCAGTGTGGATGCC+GGG | + | chr5_4:48792797-48792816 | Msa0855470:CDS | 55.0% | |
| AAATGGGGGATGCGCGTTAC+TGG | + | chr5_4:48792835-48792854 | Msa0855470:CDS | 55.0% | |
| ! | CGCGTTACTGGAGCTGCTTT+AGG | + | chr5_4:48792847-48792866 | Msa0855470:CDS | 55.0% |
| CTGGAGCTGCTATAGGCTAC+TGG | + | chr5_4:48793618-48793637 | Msa0855470:CDS | 55.0% | |
| GAAGATGGCAGTGTGGATGC+CGG | + | chr5_4:48792796-48792815 | Msa0855470:CDS | 55.0% | |
| AAGATGGCAGTGTGGATGCC+GGG | + | chr5_4:48792797-48792816 | Msa0855470:CDS | 55.0% | |
| ATGGGCAATGCGCGTTACTG+GGG | + | chr5_4:48793709-48793728 | Msa0855470:CDS | 55.0% | |
| GCGCGCGGGTGAATTTGATG+GGG | + | chr5_4:48790740-48790759 | Msa0855470:exon | 60.0% | |
| TTAGGAGTGGAAGGGAGGGG+AGG | + | chr5_4:48792179-48792198 | Msa0855470:intron | 60.0% | |
| TAGGAGTGGAAGGGAGGGGA+GGG | + | chr5_4:48792180-48792199 | Msa0855470:intron | 60.0% | |
| GGTTTAGGCGGGGAAGGGAA+GGG | - | chr5_4:48792368-48792387 | None:intergenic | 60.0% | |
| AGATGGCAGTGTGGATGCCG+GGG | + | chr5_4:48792798-48792817 | Msa0855470:CDS | 60.0% | |
| AGATGGCAGTGTGGATGCCG+GGG | + | chr5_4:48792798-48792817 | Msa0855470:CDS | 60.0% | |
| TAGGCGGGGAAGGGAAGGGA+GGG | - | chr5_4:48792364-48792383 | None:intergenic | 65.0% | |
| TTAGGCGGGGAAGGGAAGGG+AGG | - | chr5_4:48792365-48792384 | None:intergenic | 65.0% | |
| GGGTTTAGGCGGGGAAGGGA+AGG | - | chr5_4:48792369-48792388 | None:intergenic | 65.0% | |
| GGCAGTGTGGATGCCGGGGT+TGG | + | chr5_4:48792802-48792821 | Msa0855470:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 48790740 | 48794624 | 48790740 | ID=Msa0855470;Name=Msa0855470 |
| chr5_4 | mRNA | 48790740 | 48794624 | 48790740 | ID=Msa0855470-mRNA-1;Parent=Msa0855470;Name=Msa0855470-mRNA-1;_AED=0.31;_eAED=0.31;_QI=17|0.77|0.8|1|0.88|0.8|10|0|429 |
| chr5_4 | exon | 48790740 | 48790865 | 48790740 | ID=Msa0855470-mRNA-1:exon:15426;Parent=Msa0855470-mRNA-1 |
| chr5_4 | exon | 48791082 | 48791283 | 48791082 | ID=Msa0855470-mRNA-1:exon:15427;Parent=Msa0855470-mRNA-1 |
| chr5_4 | exon | 48791371 | 48791528 | 48791371 | ID=Msa0855470-mRNA-1:exon:15428;Parent=Msa0855470-mRNA-1 |
| chr5_4 | exon | 48791643 | 48791788 | 48791643 | ID=Msa0855470-mRNA-1:exon:15429;Parent=Msa0855470-mRNA-1 |
| chr5_4 | exon | 48792039 | 48792080 | 48792039 | ID=Msa0855470-mRNA-1:exon:15430;Parent=Msa0855470-mRNA-1 |
| chr5_4 | exon | 48792712 | 48792903 | 48792712 | ID=Msa0855470-mRNA-1:exon:15431;Parent=Msa0855470-mRNA-1 |
| chr5_4 | exon | 48793156 | 48793248 | 48793156 | ID=Msa0855470-mRNA-1:exon:15432;Parent=Msa0855470-mRNA-1 |
| chr5_4 | exon | 48793584 | 48793748 | 48793584 | ID=Msa0855470-mRNA-1:exon:15433;Parent=Msa0855470-mRNA-1 |
| chr5_4 | exon | 48794050 | 48794141 | 48794050 | ID=Msa0855470-mRNA-1:exon:15434;Parent=Msa0855470-mRNA-1 |
| chr5_4 | exon | 48794537 | 48794624 | 48794537 | ID=Msa0855470-mRNA-1:exon:15435;Parent=Msa0855470-mRNA-1 |
| chr5_4 | five_prime_UTR | 48790740 | 48790756 | 48790740 | ID=Msa0855470-mRNA-1:five_prime_utr;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48790757 | 48790865 | 48790757 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48791082 | 48791283 | 48791082 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48791371 | 48791528 | 48791371 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48791643 | 48791788 | 48791643 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48792039 | 48792080 | 48792039 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48792712 | 48792903 | 48792712 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48793156 | 48793248 | 48793156 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48793584 | 48793748 | 48793584 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48794050 | 48794141 | 48794050 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| chr5_4 | CDS | 48794537 | 48794624 | 48794537 | ID=Msa0855470-mRNA-1:cds;Parent=Msa0855470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
