AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858540 MtrunA17_Chr5g0447701 92.602 392 23 2 1 387 1 391 0.0 725
Msa0858540 MtrunA17_Chr5g0447711 53.943 317 129 4 1 317 1 300 3.60e-110 325
Msa0858540 MtrunA17_Chr7g0243891 45.652 230 121 4 85 310 208 437 2.12e-54 188
Msa0858540 MtrunA17_Chr3g0101131 42.510 247 117 5 84 309 235 477 5.57e-54 188
Msa0858540 MtrunA17_Chr3g0101131 45.455 88 47 1 219 306 215 301 3.33e-15 77.4
Msa0858540 MtrunA17_Chr3g0106491 40.909 264 129 5 80 323 185 441 2.67e-52 181
Msa0858540 MtrunA17_Chr5g0445311 41.700 247 129 4 91 325 199 442 6.05e-52 181
Msa0858540 MtrunA17_Chr5g0432161 44.583 240 111 6 93 310 245 484 1.02e-51 181
Msa0858540 MtrunA17_Chr5g0432161 46.067 89 47 1 218 306 215 302 7.11e-16 79.3
Msa0858540 MtrunA17_Chr4g0004911 40.927 259 131 6 86 329 176 427 1.60e-49 174
Msa0858540 MtrunA17_Chr7g0249311 37.179 312 134 7 89 338 176 487 1.95e-49 177
Msa0858540 MtrunA17_Chr5g0418191 38.214 280 150 5 52 309 104 382 1.43e-48 170
Msa0858540 MtrunA17_Chr5g0418191 48.485 66 33 1 90 154 318 383 1.18e-11 65.9
Msa0858540 MtrunA17_Chr7g0218081 37.370 289 125 6 84 327 220 497 8.58e-48 170
Msa0858540 MtrunA17_Chr4g0042831 39.910 223 110 4 88 309 141 340 1.67e-44 158
Msa0858540 MtrunA17_Chr7g0263531 38.961 231 124 4 93 306 190 420 2.54e-44 159
Msa0858540 MtrunA17_Chr7g0263531 35.714 126 69 3 248 370 190 306 1.62e-15 77.8
Msa0858540 MtrunA17_Chr7g0263531 40.659 91 48 2 70 154 334 424 1.10e-12 68.9
Msa0858540 MtrunA17_Chr4g0074001 34.646 254 116 6 93 312 187 424 1.50e-35 136
Msa0858540 MtrunA17_Chr4g0074001 45.161 62 33 1 90 150 357 418 2.03e-11 65.5
Msa0858540 MtrunA17_Chr4g0009881 56.190 105 45 1 76 180 1 104 1.36e-32 118
Msa0858540 MtrunA17_Chr3g0079691 57.000 100 42 1 210 309 459 557 4.36e-29 119
Msa0858540 MtrunA17_Chr3g0079691 61.667 60 23 0 91 150 279 338 5.47e-20 92.0
Msa0858540 MtrunA17_Chr3g0079691 46.465 99 40 4 215 306 246 338 2.38e-14 74.7
Msa0858540 MtrunA17_Chr3g0079691 50.000 64 31 1 90 152 493 556 7.18e-12 67.0
Msa0858540 MtrunA17_Chr7g0249301 50.526 95 47 0 234 328 279 373 7.23e-28 113
Msa0858540 MtrunA17_Chr7g0249301 55.263 76 31 1 89 161 59 134 1.10e-19 89.7
Msa0858540 MtrunA17_Chr7g0249301 37.143 105 64 2 202 306 18 120 9.23e-13 68.9
Msa0858540 MtrunA17_Chr7g0249301 51.562 64 30 1 90 152 290 353 2.51e-12 67.8
Msa0858540 MtrunA17_Chr1g0150801 62.857 70 26 0 234 303 89 158 2.66e-25 100
Msa0858540 MtrunA17_Chr3g0099641 41.379 116 65 3 202 315 207 321 2.36e-23 101
Msa0858540 MtrunA17_Chr3g0099641 47.619 63 31 2 90 150 249 311 5.12e-11 63.9
Msa0858540 MtrunA17_Chr7g0270831 48.837 86 42 2 232 315 201 286 9.63e-23 99.4
Msa0858540 MtrunA17_Chr7g0270831 45.588 68 35 2 90 155 214 281 1.17e-11 65.9
Msa0858540 MtrunA17_Chr2g0322391 52.439 82 38 1 226 306 328 409 1.13e-22 99.8
Msa0858540 MtrunA17_Chr4g0075201 49.474 95 41 3 221 308 236 330 1.42e-22 99.4
Msa0858540 MtrunA17_Chr1g0188941 49.367 79 40 0 229 307 33 111 4.62e-22 90.5
Msa0858540 MtrunA17_Chr4g0051181 52.500 80 37 1 230 308 226 305 6.29e-22 97.4
Msa0858540 MtrunA17_Chr7g0270191 57.333 75 32 0 232 306 130 204 6.51e-22 94.7
Msa0858540 MtrunA17_Chr7g0270191 50.000 60 29 1 92 150 145 204 4.56e-11 63.2
Msa0858540 MtrunA17_Chr2g0288871 43.000 100 55 2 209 306 267 366 6.96e-22 97.4
Msa0858540 MtrunA17_Chr2g0288871 47.619 63 31 2 90 150 303 365 4.38e-11 64.3
Msa0858540 MtrunA17_Chr4g0051881 55.056 89 36 2 234 321 165 250 7.38e-22 95.5
Msa0858540 MtrunA17_Chr4g0051881 51.515 66 23 2 92 152 178 239 2.09e-12 67.8
Msa0858540 MtrunA17_Chr8g0383251 48.387 93 46 1 216 306 75 167 7.89e-22 92.0
Msa0858540 MtrunA17_Chr5g0443131 57.692 78 32 1 234 310 144 221 2.00e-21 93.6
Msa0858540 MtrunA17_Chr8g0335811 52.703 74 35 0 232 305 139 212 4.70e-21 90.9
Msa0858540 MtrunA17_Chr8g0335811 49.254 67 32 2 90 154 152 218 2.62e-11 63.2
Msa0858540 MtrunA17_Chr4g0025061 48.315 89 40 2 226 308 334 422 5.10e-21 95.1
Msa0858540 MtrunA17_Chr2g0294231 56.000 75 33 0 232 306 188 262 6.94e-21 93.2
Msa0858540 MtrunA17_Chr2g0294231 52.542 59 27 1 93 150 204 262 4.40e-12 67.0
Msa0858540 MtrunA17_Chr3g0129361 51.351 74 36 0 232 305 129 202 1.23e-20 89.7
Msa0858540 MtrunA17_Chr5g0418781 53.409 88 37 1 234 317 111 198 1.24e-20 90.9
Msa0858540 MtrunA17_Chr5g0418781 54.386 57 25 1 92 147 124 180 1.38e-11 64.7
Msa0858540 MtrunA17_Chr1g0150271 43.564 101 43 4 234 320 86 186 2.72e-20 89.4
Msa0858540 MtrunA17_Chr1g0194481 55.263 76 34 0 232 307 143 218 4.01e-20 90.1
Msa0858540 MtrunA17_Chr1g0194481 40.659 91 49 2 92 177 158 248 1.21e-12 68.2
Msa0858540 MtrunA17_Chr3g0136961 52.703 74 32 3 233 303 122 195 5.47e-20 89.4
Msa0858540 MtrunA17_Chr8g0386241 39.175 97 57 1 207 303 65 159 5.98e-20 86.7
Msa0858540 MtrunA17_Chr8g0386241 45.946 74 37 2 90 162 101 172 6.35e-13 66.6
Msa0858540 MtrunA17_Chr7g0224801 55.224 67 30 0 237 303 83 149 6.25e-20 86.3
Msa0858540 MtrunA17_Chr7g0224801 48.333 60 30 1 90 148 91 150 2.20e-12 65.1
Msa0858540 MtrunA17_Chr6g0485431 37.795 127 78 1 182 307 89 215 1.83e-19 89.0
Msa0858540 MtrunA17_Chr4g0060271 50.000 76 37 1 232 306 240 315 2.06e-19 90.1
Msa0858540 MtrunA17_Chr4g0068541 49.333 75 38 0 233 307 194 268 2.07e-19 89.4
Msa0858540 MtrunA17_Chr1g0150281 53.425 73 31 2 234 303 125 197 2.14e-19 87.4
Msa0858540 MtrunA17_Chr4g0025051 44.565 92 49 2 226 315 314 405 2.19e-19 90.1
Msa0858540 MtrunA17_Chr3g0129321 52.055 73 35 0 234 306 105 177 2.54e-19 85.5
Msa0858540 MtrunA17_Chr3g0129321 43.243 74 41 1 89 161 115 188 1.78e-11 63.2
Msa0858540 MtrunA17_Chr2g0302391 40.708 113 61 3 218 328 182 290 3.98e-19 88.6
Msa0858540 MtrunA17_Chr7g0216891 52.113 71 33 1 234 303 206 276 6.89e-19 88.6
Msa0858540 MtrunA17_Chr7g0238921 57.377 61 26 0 244 304 121 181 9.98e-19 86.3
Msa0858540 MtrunA17_Chr8g0383351 50.667 75 36 1 232 305 144 218 1.09e-18 84.3
Msa0858540 MtrunA17_Chr4g0001361 36.478 159 82 6 233 379 146 297 2.73e-18 84.7
Msa0858540 MtrunA17_Chr4g0001361 44.444 63 33 2 90 150 160 222 3.48e-11 63.9
Msa0858540 MtrunA17_Chr1g0189391 40.000 95 56 1 212 305 62 156 3.67e-18 84.7
Msa0858540 MtrunA17_Chr2g0333851 50.000 78 36 2 233 307 153 230 2.20e-17 82.4
Msa0858540 MtrunA17_Chr7g0248721 52.857 70 32 1 234 303 128 196 3.40e-17 79.7
Msa0858540 MtrunA17_Chr7g0248721 50.000 60 28 2 90 148 139 197 4.40e-11 62.4
Msa0858540 MtrunA17_Chr4g0053281 54.386 57 25 1 248 303 267 323 2.23e-16 79.7
Msa0858540 MtrunA17_Chr1g0147881 49.296 71 35 1 234 303 249 319 2.82e-16 79.3
Msa0858540 MtrunA17_Chr5g0401821 47.887 71 36 1 234 303 186 256 5.29e-16 77.4
Msa0858540 MtrunA17_Chr7g0270051 39.130 115 57 4 195 308 13 115 1.72e-15 75.9
Msa0858540 MtrunA17_Chr1g0184691 55.172 58 25 1 248 304 294 351 2.43e-15 76.6
Msa0858540 MtrunA17_Chr4g0071521 46.479 71 37 1 234 303 232 302 4.10e-15 75.5
Msa0858540 MtrunA17_Chr2g0319961 42.857 91 45 2 226 315 65 149 9.69e-15 73.6
Msa0858540 MtrunA17_Chr8g0379461 50.000 64 31 1 247 309 76 139 1.30e-14 73.2
Msa0858540 MtrunA17_Chr8g0387501 47.222 72 37 1 239 309 121 192 1.43e-14 73.6
Msa0858540 MtrunA17_Chr8g0387501 48.333 60 29 2 93 150 130 189 9.60e-11 62.0
Msa0858540 MtrunA17_Chr2g0289181 45.205 73 39 1 236 307 3 75 4.16e-14 71.2
Msa0858540 MtrunA17_Chr2g0289181 51.471 68 31 2 88 153 10 77 9.54e-14 70.1
Msa0858540 MtrunA17_Chr4g0024391 44.595 74 40 1 226 298 208 281 4.53e-14 73.6
Msa0858540 MtrunA17_Chr1g0202461 43.038 79 43 2 232 309 247 324 6.70e-14 72.4
Msa0858540 MtrunA17_Chr5g0419241 53.448 58 22 1 221 273 46 103 6.73e-14 67.4
Msa0858540 MtrunA17_Chr5g0432071 30.921 152 84 2 1 152 34 164 8.77e-14 70.1
Msa0858540 MtrunA17_Chr5g0432071 39.785 93 48 4 217 307 77 163 6.38e-13 67.4
Msa0858540 MtrunA17_Chr8g0348311 48.485 66 33 1 245 309 153 218 1.20e-13 71.6
Msa0858540 MtrunA17_Chr2g0284321 50.820 61 28 2 248 306 36 96 2.46e-13 68.9
Msa0858540 MtrunA17_Chr2g0284321 48.333 60 29 2 93 150 36 95 9.47e-11 61.2
Msa0858540 MtrunA17_Chr7g0248691 33.094 139 70 4 245 360 152 290 3.94e-13 69.7
Msa0858540 MtrunA17_Chr7g0228941 49.123 57 28 1 248 303 53 109 8.63e-13 65.1
Msa0858540 MtrunA17_Chr2g0293481 49.206 63 31 1 248 309 268 330 1.34e-12 68.9
Msa0858540 MtrunA17_Chr3g0139021 43.836 73 40 1 232 303 299 371 3.35e-12 67.4
Msa0858540 MtrunA17_Chr8g0347251 44.615 65 33 1 240 301 129 193 4.68e-11 63.5
Msa0858540 MtrunA17_Chr3g0126391 45.902 61 30 1 244 301 130 190 4.83e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858540 AT2G04880.2 45.113 266 110 7 76 314 94 350 3.88e-66 217
Msa0858540 AT2G04880.1 44.128 281 115 7 76 314 94 374 4.93e-65 215
Msa0858540 AT4G26640.5 41.017 295 128 9 83 344 30 311 1.10e-52 180
Msa0858540 AT4G26640.6 41.017 295 128 9 83 344 30 311 1.10e-52 180
Msa0858540 AT4G26640.4 41.017 295 128 9 83 344 30 311 1.10e-52 180
Msa0858540 AT4G26640.3 41.017 295 128 9 83 344 30 311 1.10e-52 180
Msa0858540 AT4G26640.1 41.017 295 128 9 83 344 134 415 1.01e-51 180
Msa0858540 AT4G26640.7 43.825 251 104 7 83 309 166 403 1.55e-51 180
Msa0858540 AT4G26640.2 41.017 295 128 9 83 344 206 487 2.56e-51 180
Msa0858540 AT2G38470.1 41.532 248 110 4 92 310 184 425 1.91e-50 177
Msa0858540 AT2G38470.1 51.562 64 30 1 90 152 360 423 4.30e-12 67.8
Msa0858540 AT2G30250.1 42.553 235 124 5 83 308 157 389 6.76e-50 173
Msa0858540 AT5G07100.2 40.756 238 100 4 74 309 5 203 8.11e-48 162
Msa0858540 AT5G07100.4 40.756 238 100 4 74 309 5 203 8.11e-48 162
Msa0858540 AT5G07100.5 40.756 238 100 4 74 309 5 203 8.11e-48 162
Msa0858540 AT5G07100.3 40.756 238 100 4 74 309 5 203 8.11e-48 162
Msa0858540 AT5G07100.1 40.756 238 100 4 74 309 98 296 1.73e-47 164
Msa0858540 AT1G13960.2 40.249 241 119 5 88 303 72 312 2.49e-47 165
Msa0858540 AT4G26440.1 37.743 257 119 3 93 309 179 434 1.17e-46 168
Msa0858540 AT4G26440.1 50.820 61 29 1 246 306 177 236 5.73e-13 70.9
Msa0858540 AT4G30935.1 35.855 304 169 9 33 312 95 396 6.43e-46 164
Msa0858540 AT3G01080.1 40.741 216 112 3 88 303 163 362 3.72e-45 161
Msa0858540 AT3G01080.1 56.250 64 27 1 246 309 166 228 1.05e-14 75.5
Msa0858540 AT3G01080.1 50.000 62 30 1 90 150 304 365 9.21e-11 63.5
Msa0858540 AT3G01080.2 40.741 216 112 3 88 303 201 400 4.63e-45 161
Msa0858540 AT3G01080.2 56.250 64 27 1 246 309 204 266 1.30e-14 75.5
Msa0858540 AT3G01080.2 50.000 62 30 1 90 150 342 403 8.33e-11 63.9
Msa0858540 AT2G03340.1 33.846 260 106 4 88 309 246 477 1.95e-40 150
Msa0858540 AT2G03340.1 56.923 65 27 1 246 310 249 312 8.30e-17 82.4
Msa0858540 AT2G03340.1 48.485 66 33 1 90 154 413 478 5.58e-12 67.4
Msa0858540 AT2G37260.2 35.448 268 118 7 93 316 84 340 2.58e-39 144
Msa0858540 AT2G37260.3 35.448 268 118 7 93 316 86 342 2.61e-39 144
Msa0858540 AT2G37260.1 35.448 268 118 7 93 316 166 422 5.44e-39 144
Msa0858540 AT5G56270.1 55.000 100 45 0 210 309 450 549 6.78e-30 122
Msa0858540 AT5G56270.1 55.932 59 25 1 248 306 274 331 5.37e-15 77.0
Msa0858540 AT5G56270.1 53.968 63 29 0 91 153 272 334 7.10e-15 76.6
Msa0858540 AT5G56270.1 50.000 64 31 1 90 152 485 548 2.63e-11 65.9
Msa0858540 AT1G13960.1 61.111 72 28 0 232 303 394 465 1.60e-26 111
Msa0858540 AT4G12020.10 33.010 206 104 3 88 267 464 661 7.59e-24 104
Msa0858540 AT4G12020.10 50.820 61 29 1 246 306 467 526 1.31e-12 70.1
Msa0858540 AT4G12020.1 33.010 206 104 3 88 267 464 661 7.75e-24 104
Msa0858540 AT4G12020.1 34.483 116 70 3 246 356 467 581 1.22e-12 70.1
Msa0858540 AT4G12020.9 33.010 206 104 3 88 267 464 661 7.75e-24 104
Msa0858540 AT4G12020.9 34.483 116 70 3 246 356 467 581 1.22e-12 70.1
Msa0858540 AT4G12020.6 33.010 206 104 3 88 267 464 661 7.79e-24 104
Msa0858540 AT4G12020.6 50.820 61 29 1 246 306 467 526 1.24e-12 70.1
Msa0858540 AT4G12020.8 33.010 206 104 3 88 267 464 661 7.79e-24 104
Msa0858540 AT4G12020.8 50.820 61 29 1 246 306 467 526 1.24e-12 70.1
Msa0858540 AT4G12020.3 33.010 206 104 3 88 267 464 661 7.95e-24 104
Msa0858540 AT4G12020.3 50.820 61 29 1 246 306 467 526 1.29e-12 70.1
Msa0858540 AT4G12020.7 33.010 206 104 3 88 267 464 661 8.03e-24 104
Msa0858540 AT4G12020.7 34.483 116 70 3 246 356 467 581 1.21e-12 70.1
Msa0858540 AT4G12020.2 33.010 206 104 3 88 267 464 661 8.12e-24 104
Msa0858540 AT4G12020.2 50.820 61 29 1 246 306 467 526 1.35e-12 70.1
Msa0858540 AT4G12020.4 33.010 206 104 3 88 267 464 661 8.73e-24 104
Msa0858540 AT4G12020.4 50.820 61 29 1 246 306 467 526 1.42e-12 70.1
Msa0858540 AT4G12020.5 33.010 206 104 3 88 267 397 594 9.69e-24 104
Msa0858540 AT4G12020.5 50.820 61 29 1 246 306 400 459 1.38e-12 70.1
Msa0858540 AT4G12020.11 33.010 206 104 3 88 267 464 661 1.26e-23 103
Msa0858540 AT4G12020.11 34.483 116 70 3 246 356 467 581 1.30e-12 70.1
Msa0858540 AT5G26170.1 57.143 70 30 0 234 303 100 169 1.84e-23 96.3
Msa0858540 AT4G04450.2 42.735 117 63 4 225 337 176 292 5.78e-23 100
Msa0858540 AT4G04450.2 47.619 63 31 2 90 150 196 258 1.68e-11 65.9
Msa0858540 AT4G22070.4 49.425 87 42 2 222 306 272 358 8.33e-23 100
Msa0858540 AT4G22070.4 47.619 63 31 2 90 150 295 357 3.57e-11 65.1
Msa0858540 AT4G22070.3 49.425 87 42 2 222 306 272 358 8.33e-23 100
Msa0858540 AT4G22070.3 47.619 63 31 2 90 150 295 357 3.57e-11 65.1
Msa0858540 AT4G22070.2 49.425 87 42 2 222 306 272 358 8.33e-23 100
Msa0858540 AT4G22070.2 47.619 63 31 2 90 150 295 357 3.57e-11 65.1
Msa0858540 AT4G22070.1 49.425 87 42 2 222 306 272 358 8.33e-23 100
Msa0858540 AT4G22070.1 47.619 63 31 2 90 150 295 357 3.57e-11 65.1
Msa0858540 AT4G04450.1 42.735 117 63 4 225 337 270 386 1.42e-22 99.8
Msa0858540 AT4G04450.1 47.619 63 31 2 90 150 290 352 3.17e-11 65.1
Msa0858540 AT5G64810.1 57.143 70 30 0 234 303 97 166 1.49e-22 94.7
Msa0858540 AT2G47260.1 57.333 75 32 0 232 306 159 233 1.69e-22 97.8
Msa0858540 AT1G68150.1 52.500 80 37 1 230 308 218 297 2.37e-22 97.8
Msa0858540 AT1G62300.1 47.059 102 49 3 210 306 272 373 5.72e-22 98.2
Msa0858540 AT1G62300.1 47.619 63 31 2 90 150 310 372 4.47e-11 64.7
Msa0858540 AT1G29860.1 57.500 80 33 1 232 310 121 200 6.63e-22 95.1
Msa0858540 AT1G29860.1 50.000 60 29 1 92 150 136 195 7.05e-11 63.2
Msa0858540 AT1G55600.1 49.412 85 43 0 222 306 282 366 7.20e-22 97.4
Msa0858540 AT1G55600.1 43.421 76 34 2 76 150 299 366 6.26e-11 64.3
Msa0858540 AT2G44745.1 52.703 74 35 0 232 305 130 203 1.26e-21 92.8
Msa0858540 AT2G44745.1 46.479 71 37 1 90 159 143 213 9.31e-12 64.7
Msa0858540 AT4G18170.1 60.526 76 30 0 232 307 157 232 1.30e-21 94.7
Msa0858540 AT4G18170.1 51.667 60 28 1 92 150 172 231 3.08e-11 64.3
Msa0858540 AT4G01720.1 55.844 77 32 2 232 306 224 300 1.87e-21 96.3
Msa0858540 AT5G49520.1 56.250 80 34 1 232 310 206 285 2.34e-21 95.1
Msa0858540 AT5G49520.1 50.847 59 28 1 93 150 222 280 4.62e-11 64.3
Msa0858540 AT2G46130.1 55.714 70 31 0 234 303 17 86 5.54e-21 87.8
Msa0858540 AT2G46130.1 43.750 80 43 2 90 167 28 107 8.03e-14 67.8
Msa0858540 AT5G46350.1 57.895 76 32 0 234 309 170 245 6.52e-21 92.8
Msa0858540 AT5G46350.1 50.000 60 29 1 92 150 183 242 9.89e-11 62.8
Msa0858540 AT5G13080.1 42.105 95 55 0 209 303 29 123 1.19e-20 87.8
Msa0858540 AT5G13080.1 48.438 64 32 1 90 152 65 128 1.16e-12 65.5
Msa0858540 AT4G39410.1 54.054 74 34 0 232 305 208 281 2.13e-20 91.3
Msa0858540 AT5G41570.1 51.429 70 34 0 234 303 85 154 5.08e-20 87.0
Msa0858540 AT5G41570.1 43.333 90 43 3 90 177 96 179 1.13e-13 69.3
Msa0858540 AT1G64000.1 51.429 70 34 0 234 303 101 170 5.65e-20 87.4
Msa0858540 AT1G64000.1 43.902 82 44 2 88 167 110 191 3.24e-14 71.2
Msa0858540 AT5G15130.1 52.000 75 35 1 233 306 213 287 5.99e-20 92.0
Msa0858540 AT5G15130.2 52.000 75 35 1 233 306 171 245 7.04e-20 91.7
Msa0858540 AT1G69310.4 57.143 70 30 0 234 303 134 203 3.45e-19 87.4
Msa0858540 AT1G69310.4 52.632 57 26 1 92 147 147 203 6.53e-11 63.2
Msa0858540 AT1G69310.2 57.143 70 30 0 234 303 134 203 3.45e-19 87.4
Msa0858540 AT1G69310.2 52.632 57 26 1 92 147 147 203 6.53e-11 63.2
Msa0858540 AT1G69310.1 57.143 70 30 0 234 303 134 203 3.45e-19 87.4
Msa0858540 AT1G69310.1 52.632 57 26 1 92 147 147 203 6.53e-11 63.2
Msa0858540 AT3G01970.1 50.704 71 35 0 233 303 51 121 4.86e-19 83.6
Msa0858540 AT3G62340.1 46.491 114 54 3 234 342 105 216 1.51e-18 85.5
Msa0858540 AT3G62340.1 52.542 59 27 1 93 150 119 177 1.44e-11 65.1
Msa0858540 AT4G31800.2 49.275 69 34 1 239 306 103 171 1.66e-18 84.7
Msa0858540 AT1G18860.1 50.000 76 37 1 232 306 224 299 2.00e-18 87.4
Msa0858540 AT4G31800.1 47.887 71 36 1 239 308 168 238 2.45e-18 85.5
Msa0858540 AT5G43290.1 32.836 134 80 1 243 376 110 233 1.11e-17 82.8
Msa0858540 AT2G25000.2 53.226 62 28 1 246 306 102 163 1.73e-17 81.3
Msa0858540 AT2G25000.4 53.226 62 28 1 246 306 102 163 1.73e-17 81.3
Msa0858540 AT2G25000.3 36.567 134 74 4 243 372 121 247 2.77e-17 81.3
Msa0858540 AT2G25000.1 36.567 134 74 4 243 372 142 268 3.26e-17 81.3
Msa0858540 AT2G21900.1 48.485 66 34 0 242 307 104 169 4.14e-17 79.7
Msa0858540 AT2G21900.1 41.250 80 46 1 72 150 89 168 5.90e-13 67.8
Msa0858540 AT2G23320.1 41.121 107 45 3 215 303 191 297 4.77e-17 81.6
Msa0858540 AT1G69810.2 50.649 77 36 2 232 306 130 206 5.17e-17 81.6
Msa0858540 AT1G69810.1 50.649 77 36 2 232 306 188 264 6.63e-17 82.0
Msa0858540 AT5G28650.1 57.895 57 23 1 248 303 263 319 1.90e-16 80.1
Msa0858540 AT1G80840.1 43.590 78 41 2 233 307 130 207 2.29e-16 79.3
Msa0858540 AT3G01080.3 51.562 64 31 0 88 151 201 264 2.43e-16 79.7
Msa0858540 AT3G01080.3 56.250 64 27 1 246 309 204 266 5.60e-15 75.9
Msa0858540 AT2G46130.2 51.429 70 30 1 234 303 17 82 2.99e-16 74.3
Msa0858540 AT5G52830.1 41.593 113 63 3 230 340 149 260 3.12e-16 79.7
Msa0858540 AT5G52830.1 45.588 68 35 2 85 150 158 225 8.35e-12 66.2
Msa0858540 AT3G04670.1 57.895 57 23 1 248 303 263 319 5.57e-16 78.6
Msa0858540 AT2G24570.1 56.140 57 24 1 248 303 244 300 5.61e-16 78.6
Msa0858540 AT4G24240.1 47.222 72 37 1 234 304 268 339 6.79e-16 78.6
Msa0858540 AT4G31550.1 54.386 57 25 1 248 303 247 303 4.03e-15 76.3
Msa0858540 AT4G31550.2 54.386 57 25 1 248 303 246 302 4.03e-15 76.3
Msa0858540 AT4G23550.1 45.333 75 40 1 236 309 129 203 8.06e-15 75.1
Msa0858540 AT2G30590.1 54.386 57 25 1 248 303 314 370 1.20e-14 75.1
Msa0858540 AT1G69310.3 52.857 70 29 1 234 303 134 199 1.56e-14 73.9
Msa0858540 AT1G29280.1 50.820 61 29 1 247 306 74 134 3.88e-14 72.4
Msa0858540 AT1G29280.1 48.333 60 29 2 93 150 75 134 9.24e-11 62.4
Msa0858540 AT3G58710.2 40.566 106 56 2 203 307 32 131 2.07e-13 70.5
Msa0858540 AT3G58710.1 44.578 83 39 2 226 307 56 132 7.94e-13 68.6
Msa0858540 AT4G01250.1 48.438 64 32 1 247 309 128 191 1.19e-12 68.6
Msa0858540 AT2G34830.2 49.206 63 31 1 248 309 225 287 1.36e-12 69.3
Msa0858540 AT2G34830.1 49.206 63 31 1 248 309 216 278 1.48e-12 68.9
Msa0858540 AT2G34830.1 49.231 65 31 2 88 150 211 275 9.14e-11 63.5
Msa0858540 AT5G01900.1 38.889 90 51 2 90 175 108 197 1.96e-12 67.4
Msa0858540 AT1G30650.1 47.619 63 32 1 248 309 218 280 9.35e-12 66.6
Msa0858540 AT1G30650.1 50.769 65 30 2 88 150 213 277 3.14e-11 65.1
Msa0858540 AT5G45260.1 48.387 62 28 2 93 150 1209 1270 1.36e-11 67.0
Msa0858540 AT2G46400.1 42.254 71 38 1 234 301 91 161 4.48e-11 63.5
Msa0858540 AT5G45050.1 41.463 82 46 2 229 309 1163 1243 9.87e-11 64.3

Find 96 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACAATTATTTACTATAT+TGG 0.188794 5_4:+55998237 Msa0858540:three_prime_UTR
TTCCAACTATTTATAATCTT+TGG 0.238690 5_4:-55998089 None:intergenic
GGTGGTACGGTGTTTGATTC+AGG 0.253166 5_4:-55997023 None:intergenic
TTAAGGGGAGTGAATTTAAA+AGG 0.256917 5_4:+55996889 Msa0858540:CDS
CACTTGCTGCTGTACTTTAT+CGG 0.275757 5_4:-55996616 None:intergenic
TACGGTCAGAAAATGGTTAA+AGG 0.320262 5_4:+55997511 Msa0858540:CDS
ACGGTGTTTGATTCAGGTTT+GGG 0.332610 5_4:-55997017 None:intergenic
TACGGTGTTTGATTCAGGTT+TGG 0.335607 5_4:-55997018 None:intergenic
GGTATCCGTGCTTCATAGTT+TGG 0.336564 5_4:+55996155 Msa0858540:five_prime_UTR
AAAACATTGCAATTCAGCTT+TGG 0.349332 5_4:-55998047 None:intergenic
GGCTATAAATGGCGAAAGTA+TGG 0.352648 5_4:+55996855 Msa0858540:CDS
TCACAAAAGATGGCTATAAA+TGG 0.370905 5_4:+55996844 Msa0858540:CDS
ATCGCTGATAGTATCTTCTT+TGG 0.377961 5_4:-55997935 None:intergenic
GCGCAAATACGGTCAGAAAA+TGG 0.379435 5_4:+55997504 Msa0858540:CDS
AAACATTGCAATTCAGCTTT+GGG 0.379702 5_4:-55998046 None:intergenic
GCAACAGATGTTGTTGTACT+AGG 0.386843 5_4:-55998015 None:intergenic
TTGTGAGTTTGTGTTGTGTT+TGG 0.391062 5_4:-55994771 None:intergenic
TAGGTTATACTTATATATTA+TGG 0.392121 5_4:+55998118 Msa0858540:three_prime_UTR
CAATTCATGCGAAGGAGTCT+TGG 0.392943 5_4:-55996772 None:intergenic
TACCAAAGATTATAAATAGT+TGG 0.394205 5_4:+55998087 Msa0858540:three_prime_UTR
AATTCATGCGAAGGAGTCTT+GGG 0.399844 5_4:-55996771 None:intergenic
CTTATATATCAAAAGGAAAC+AGG 0.406129 5_4:-55996541 None:intergenic
GGAAGGATGGTCGCTCGAAT+TGG 0.420254 5_4:-55997853 None:intergenic
AACTGTCATAACTACCTATG+AGG 0.422219 5_4:+55997765 Msa0858540:CDS
GGAAAAGAGAAGGTTAGAAT+AGG 0.424199 5_4:-55998163 None:intergenic
ACCTTCCACATCAGCAAAAG+AGG 0.424951 5_4:-55997090 None:intergenic
GTTCTTCCTGTTGTCGAAAA+GGG 0.426795 5_4:+55997056 Msa0858540:CDS
GGGGCTCTGTGAATGTTGCT+CGG 0.428148 5_4:-55996751 None:intergenic
TGTTCTTCCTGTTGTCGAAA+AGG 0.433937 5_4:+55997055 Msa0858540:CDS
CAAACTTGAATCACGTATCA+TGG 0.436403 5_4:-55997959 None:intergenic
CCGCTTACTTATATATCAAA+AGG 0.437650 5_4:-55996548 None:intergenic
TACTATCGATGCTCGAGTCC+CGG 0.444280 5_4:+55997697 Msa0858540:CDS
CGTGAAAAGGTCACAAAAGA+TGG 0.457293 5_4:+55996834 Msa0858540:CDS
ACCCTCCATAATACGTGAAA+AGG 0.461224 5_4:+55996821 Msa0858540:CDS
AGAGAAGGTTAGAATAGGAA+TGG 0.468695 5_4:-55998158 None:intergenic
GTTCGAACTACAAGTGAGTC+TGG 0.468907 5_4:+55997457 Msa0858540:CDS
TTTCAACCTCAATTTCTTCG+TGG 0.470012 5_4:+55994857 Msa0858540:five_prime_UTR
CGCGAACTGACGAGTCAAAA+CGG 0.473513 5_4:+55997276 Msa0858540:CDS
GAATTGCCTCTGATGCAATC+TGG 0.477337 5_4:+55996789 Msa0858540:CDS
GGGTATCGCTGGCGCAAATA+CGG 0.478104 5_4:+55997493 Msa0858540:CDS
GGGCTCTGTGAATGTTGCTC+GGG 0.482480 5_4:-55996750 None:intergenic
TGATGCTATGGCTTGTGACT+TGG 0.484944 5_4:+55996707 Msa0858540:CDS
AACACGATCAACCGGTGGTA+CGG 0.488236 5_4:-55997036 None:intergenic
GAGAAGGTTAGAATAGGAAT+GGG 0.488308 5_4:-55998157 None:intergenic
CTCTGTGAATGTTGCTCGGG+CGG 0.495254 5_4:-55996747 None:intergenic
ATGATCATGTTGACCCTCAT+AGG 0.497230 5_4:-55997779 None:intergenic
ACAGGAAGAACACGATCAAC+CGG 0.499247 5_4:-55997044 None:intergenic
AAGACCCTGGTTAGGAAGGA+TGG 0.500400 5_4:-55997866 None:intergenic
GAGTTTGTGTTGTGTTTGGA+TGG 0.506025 5_4:-55994767 None:intergenic
TCTTGACCAGATTGCATCAG+AGG 0.508109 5_4:-55996795 None:intergenic
AATAGTAACAACGATGCGAC+TGG 0.513117 5_4:+55997400 Msa0858540:CDS
GCATTACCACGAAGAAATTG+AGG 0.514715 5_4:-55994863 None:intergenic
CATGTACCTCCCACTGGAAG+AGG 0.517977 5_4:+55997799 Msa0858540:CDS
GTATGAAGCTGTGCCTCGAC+AGG 0.524519 5_4:+55997217 Msa0858540:CDS
TTTGCTGATGTGGAAGGTCA+AGG 0.525864 5_4:+55997095 Msa0858540:CDS
ATTTGCATATTTAGTCAACC+TGG 0.525934 5_4:-55998216 None:intergenic
AGCGACCATCCTTCCTAACC+AGG 0.527054 5_4:+55997861 Msa0858540:CDS
CCACATCAGCAAAAGAGGAT+TGG 0.536681 5_4:-55997085 None:intergenic
ATTGCAATTCAGCTTTGGGC+AGG 0.538267 5_4:-55998042 None:intergenic
TTGTAAATGATGGGTATCGC+TGG 0.545679 5_4:+55997482 Msa0858540:CDS
CGATGAATACACAGAAATGA+AGG 0.551652 5_4:-55996498 None:intergenic
CGCAAAGGTGTGACCTGTCG+AGG 0.560873 5_4:-55997230 None:intergenic
AGGGAGATTGCATTGTCACA+AGG 0.566691 5_4:+55996648 Msa0858540:CDS
GAGTCTGGAATTGTAAATGA+TGG 0.567590 5_4:+55997472 Msa0858540:CDS
TCTAAAATATTGTGATTCAT+CGG 0.567663 5_4:+55998283 Msa0858540:three_prime_UTR
AATTGAGGTTGAAATTGAAG+AGG 0.569183 5_4:-55994848 None:intergenic
TGAATCAAACACCGTACCAC+CGG 0.573093 5_4:+55997025 Msa0858540:CDS
TCATGTTCACTTAATCTGCA+TGG 0.576789 5_4:-55997988 None:intergenic
TTCATGGACACCTCTTCCAG+TGG 0.585110 5_4:-55997809 None:intergenic
TCATGGACACCTCTTCCAGT+GGG 0.592212 5_4:-55997808 None:intergenic
CGGTGTTTGATTCAGGTTTG+GGG 0.596338 5_4:-55997016 None:intergenic
TATTTGTAAGCTATGAAGCA+TGG 0.599377 5_4:+55996055 Msa0858540:five_prime_UTR
TCTTAAAAGTGAAACAAATG+AGG 0.601629 5_4:+55997885 Msa0858540:CDS
ATCAGAGGCAATTCATGCGA+AGG 0.602766 5_4:-55996780 None:intergenic
ACTGGAGCTGATGTGTCAAA+TGG 0.603473 5_4:+55997418 Msa0858540:CDS
CATGATCATGTACCTCCCAC+TGG 0.604796 5_4:+55997793 Msa0858540:CDS
ACTGTCATAACTACCTATGA+GGG 0.609013 5_4:+55997766 Msa0858540:CDS
ATATAAGTAAGCGGTTAACA+TGG 0.614915 5_4:+55996557 Msa0858540:exon
AGTGTCGGATTCTGATGCTA+TGG 0.614930 5_4:+55996695 Msa0858540:CDS
GGGAGATTGCATTGTCACAA+GGG 0.616469 5_4:+55996649 Msa0858540:CDS
TACGAAGATTGCAGTTACAT+CGG 0.625017 5_4:+55996981 Msa0858540:CDS
TAAATAGTTGGAAGTCACGT+AGG 0.631468 5_4:+55998099 Msa0858540:three_prime_UTR
GAAGGTGGATGGAAACGCAA+AGG 0.633047 5_4:-55997245 None:intergenic
AGTCTGGAATTGTAAATGAT+GGG 0.636147 5_4:+55997473 Msa0858540:CDS
GCAGCAAGTGAGTCCACAGA+GGG 0.639573 5_4:+55996629 Msa0858540:CDS
ACTTACCAAACTATGAAGCA+CGG 0.646784 5_4:-55996160 None:intergenic
GACAATGCAATCTCCCTCTG+TGG 0.657768 5_4:-55996642 None:intergenic
TTAAAGGCAACACAAATCCA+AGG 0.658587 5_4:+55997527 Msa0858540:CDS
TTCAACGTAAGCATATGTGT+CGG 0.675963 5_4:-55996109 None:intergenic
AGCAGCAAGTGAGTCCACAG+AGG 0.681184 5_4:+55996628 Msa0858540:CDS
ATTCATGCGAAGGAGTCTTG+GGG 0.682503 5_4:-55996770 None:intergenic
TGGACACCTCTTCCAGTGGG+AGG 0.683929 5_4:-55997805 None:intergenic
GCGACCATCCTTCCTAACCA+GGG 0.690672 5_4:+55997862 Msa0858540:CDS
TCAGCAAAAGAGGATTGGTG+TGG 0.698509 5_4:-55997080 None:intergenic
GGAAGAACACGATCAACCGG+TGG 0.725841 5_4:-55997041 None:intergenic
CAATTTCAGATATCACACGA+TGG 0.729225 5_4:+55996954 Msa0858540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATTTTAATTATCATTT+TGG + chr5_4:55995255-55995274 Msa0858540:intron 10.0%
!!! TGATATTTTTTAATTTTCAA+GGG - chr5_4:55995419-55995438 None:intergenic 10.0%
!!! TTGATATTTTTTAATTTTCA+AGG - chr5_4:55995420-55995439 None:intergenic 10.0%
!!! ATATTTTCTCAAATTATTAT+CGG + chr5_4:55996134-55996153 Msa0858540:five_prime_UTR 10.0%
!! ACAAATTCATAAACTAAATT+GGG - chr5_4:55995105-55995124 None:intergenic 15.0%
!! AACAAATTCATAAACTAAAT+TGG - chr5_4:55995106-55995125 None:intergenic 15.0%
!!! AATTTAGTTTATGAATTTGT+TGG + chr5_4:55995105-55995124 Msa0858540:intron 15.0%
!!! ATTTAGTTTATGAATTTGTT+GGG + chr5_4:55995106-55995125 Msa0858540:intron 15.0%
!!! TTGAATGTTTTTTATGATTT+TGG + chr5_4:55995189-55995208 Msa0858540:intron 15.0%
!!! TGAATGTTTTTTATGATTTT+GGG + chr5_4:55995190-55995209 Msa0858540:intron 15.0%
!!! TTGTAGTAAATTTTTGAAAA+GGG - chr5_4:55995455-55995474 None:intergenic 15.0%
!!! ATTGTAGTAAATTTTTGAAA+AGG - chr5_4:55995456-55995475 None:intergenic 15.0%
!!! ATTGATATTCTTTAATTTCA+GGG + chr5_4:55995764-55995783 Msa0858540:intron 15.0%
!!! TTTTTAACTTTGAAATTGTA+AGG - chr5_4:55995834-55995853 None:intergenic 15.0%
!! ATATCTTTAATAAACATGTT+TGG + chr5_4:55995936-55995955 Msa0858540:intron 15.0%
!! TATGAAAAAGATAAATAAGA+AGG - chr5_4:55996012-55996031 None:intergenic 15.0%
!! TAAAAAAATCTTACACTAAA+TGG - chr5_4:55996273-55996292 None:intergenic 15.0%
!!! TCTTAATATATTTTACTGTA+TGG + chr5_4:55997169-55997188 Msa0858540:intron 15.0%
!! TAGGTTATACTTATATATTA+TGG + chr5_4:55998118-55998137 Msa0858540:three_prime_UTR 15.0%
!! ATCACAATTATTTACTATAT+TGG + chr5_4:55998237-55998256 Msa0858540:three_prime_UTR 15.0%
!!! TATAGTAAAGTTTGTCATTT+TGG + chr5_4:55994929-55994948 Msa0858540:intron 20.0%
!! TAATCAAGTGTAAAGAAAAA+GGG - chr5_4:55995057-55995076 None:intergenic 20.0%
!! TTAATCAAGTGTAAAGAAAA+AGG - chr5_4:55995058-55995077 None:intergenic 20.0%
!! CAAATTCATAAACTAAATTG+GGG - chr5_4:55995104-55995123 None:intergenic 20.0%
!! TACAATTTCAAGACTAAAAT+GGG + chr5_4:55995314-55995333 Msa0858540:intron 20.0%
!!! TGTAGTAAATTTTTGAAAAG+GGG - chr5_4:55995454-55995473 None:intergenic 20.0%
!!! GATTGATATTCTTTAATTTC+AGG + chr5_4:55995763-55995782 Msa0858540:intron 20.0%
!! TTTAGTAACATAACATAGTT+GGG - chr5_4:55995907-55995926 None:intergenic 20.0%
!! ATAAAATAATGCATCTTGAA+AGG - chr5_4:55997597-55997616 None:intergenic 20.0%
!! TACCAAAGATTATAAATAGT+TGG + chr5_4:55998087-55998106 Msa0858540:three_prime_UTR 20.0%
!! TTCCAACTATTTATAATCTT+TGG - chr5_4:55998092-55998111 None:intergenic 20.0%
!!! TCTAAAATATTGTGATTCAT+CGG + chr5_4:55998283-55998302 Msa0858540:three_prime_UTR 20.0%
!! ATTTTCAGCTTCTTATATGT+TGG + chr5_4:55994983-55995002 Msa0858540:intron 25.0%
!!! TTTATGAATTTGTTGGGATT+AGG + chr5_4:55995112-55995131 Msa0858540:intron 25.0%
! ACACAATTGACTAAACTATA+AGG + chr5_4:55995213-55995232 Msa0858540:intron 25.0%
!!! CATTTTAGTCTTGAAATTGT+AGG - chr5_4:55995315-55995334 None:intergenic 25.0%
! CTACAATTTCAAGACTAAAA+TGG + chr5_4:55995313-55995332 Msa0858540:intron 25.0%
!!! ACAATTTTGAAGACTGTTTA+AGG + chr5_4:55995471-55995490 Msa0858540:intron 25.0%
!!! CAATTTTGAAGACTGTTTAA+GGG + chr5_4:55995472-55995491 Msa0858540:intron 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr5_4:55995625-55995644 None:intergenic 25.0%
!!! TTGCTATTTTGTAAAGTTGA+AGG + chr5_4:55995793-55995812 Msa0858540:intron 25.0%
!!! AACTTTGAAATTGTAAGGAT+CGG - chr5_4:55995829-55995848 None:intergenic 25.0%
! CTATTTACTCACTAAAATAG+TGG + chr5_4:55995857-55995876 Msa0858540:intron 25.0%
! CTTTAGTAACATAACATAGT+TGG - chr5_4:55995908-55995927 None:intergenic 25.0%
!! TAAGCTTTTTAAATGTTGTC+AGG + chr5_4:55996464-55996483 Msa0858540:intron 25.0%
! CTTATATATCAAAAGGAAAC+AGG - chr5_4:55996544-55996563 None:intergenic 25.0%
!! CCTTTTGATATATAAGTAAG+CGG + chr5_4:55996548-55996567 Msa0858540:five_prime_UTR 25.0%
!!! ATTAAGAGTTTTTTCATGCA+AGG - chr5_4:55997156-55997175 None:intergenic 25.0%
! TTTACAATGTGATATCAAAC+AGG + chr5_4:55997368-55997387 Msa0858540:intron 25.0%
!!! CACTAGCTTTTATTATGAAT+TGG + chr5_4:55997554-55997573 Msa0858540:intron 25.0%
!! GCTTTTATTATGAATTGGTA+TGG + chr5_4:55997559-55997578 Msa0858540:intron 25.0%
!! ATTTTGTAGGTGTATTTTCA+TGG - chr5_4:55997828-55997847 None:intergenic 25.0%
! TCTTAAAAGTGAAACAAATG+AGG + chr5_4:55997885-55997904 Msa0858540:CDS 25.0%
! CTAAAAATGAGCTAGAAAAA+GGG - chr5_4:55998187-55998206 None:intergenic 25.0%
! ACTAAAAATGAGCTAGAAAA+AGG - chr5_4:55998188-55998207 None:intergenic 25.0%
AATTGAGGTTGAAATTGAAG+AGG - chr5_4:55994851-55994870 None:intergenic 30.0%
!!! GTAAAGTTTGTCATTTTGGT+TGG + chr5_4:55994933-55994952 Msa0858540:intron 30.0%
GAAATTGAGGTATGAATTGT+GGG + chr5_4:55994955-55994974 Msa0858540:intron 30.0%
GTGTAAAGAAAAAGGGAAAA+GGG - chr5_4:55995050-55995069 None:intergenic 30.0%
AGTGTAAAGAAAAAGGGAAA+AGG - chr5_4:55995051-55995070 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG + chr5_4:55995687-55995706 Msa0858540:intron 30.0%
AAAAATAAGCCAATCGAAAC+GGG + chr5_4:55995688-55995707 Msa0858540:intron 30.0%
TGTCTAAAGAAATGTGTTGA+TGG + chr5_4:55995728-55995747 Msa0858540:intron 30.0%
! TAAAGAAATGTGTTGATGGA+GGG + chr5_4:55995732-55995751 Msa0858540:intron 30.0%
TGGTTCTCTGAATATAGAAT+TGG + chr5_4:55995877-55995896 Msa0858540:intron 30.0%
TATTTGTAAGCTATGAAGCA+TGG + chr5_4:55996055-55996074 Msa0858540:five_prime_UTR 30.0%
CCGCTTACTTATATATCAAA+AGG - chr5_4:55996551-55996570 None:intergenic 30.0%
ATATAAGTAAGCGGTTAACA+TGG + chr5_4:55996557-55996576 Msa0858540:exon 30.0%
TGTAGCTAAAAATGAAGTGT+CGG + chr5_4:55996680-55996699 Msa0858540:CDS 30.0%
TCACAAAAGATGGCTATAAA+TGG + chr5_4:55996844-55996863 Msa0858540:CDS 30.0%
TTAAGGGGAGTGAATTTAAA+AGG + chr5_4:55996889-55996908 Msa0858540:CDS 30.0%
!! TCTGAAATTGTTTTCTTGCA+GGG - chr5_4:55996944-55996963 None:intergenic 30.0%
!! ATCTGAAATTGTTTTCTTGC+AGG - chr5_4:55996945-55996964 None:intergenic 30.0%
!!! TGACCATTTTCTAGAATTGT+TGG + chr5_4:55997311-55997330 Msa0858540:intron 30.0%
! ACTCCAACAATTCTAGAAAA+TGG - chr5_4:55997317-55997336 None:intergenic 30.0%
! AGTCTGGAATTGTAAATGAT+GGG + chr5_4:55997473-55997492 Msa0858540:CDS 30.0%
! GATAGTAATTTCTGGAAGAT+TGG - chr5_4:55997684-55997703 None:intergenic 30.0%
AAACATTGCAATTCAGCTTT+GGG - chr5_4:55998049-55998068 None:intergenic 30.0%
AAAACATTGCAATTCAGCTT+TGG - chr5_4:55998050-55998069 None:intergenic 30.0%
ATTTGCATATTTAGTCAACC+TGG - chr5_4:55998219-55998238 None:intergenic 30.0%
TTGTGAGTTTGTGTTGTGTT+TGG - chr5_4:55994774-55994793 None:intergenic 35.0%
TTTCAACCTCAATTTCTTCG+TGG + chr5_4:55994857-55994876 Msa0858540:five_prime_UTR 35.0%
!!! GTCATTTTGGTTGGAAATTG+AGG + chr5_4:55994942-55994961 Msa0858540:intron 35.0%
GGAAATTGAGGTATGAATTG+TGG + chr5_4:55994954-55994973 Msa0858540:intron 35.0%
TTTGTTGGGATTAGGCAATT+TGG + chr5_4:55995120-55995139 Msa0858540:intron 35.0%
TAGACATGCATCTTGACTTA+GGG - chr5_4:55995714-55995733 None:intergenic 35.0%
TTAGACATGCATCTTGACTT+AGG - chr5_4:55995715-55995734 None:intergenic 35.0%
! CTAAAGAAATGTGTTGATGG+AGG + chr5_4:55995731-55995750 Msa0858540:intron 35.0%
GTAAAGTTGAAGGACCAAAT+TGG + chr5_4:55995803-55995822 Msa0858540:intron 35.0%
! TATGAAGCATGGACACTTTT+CGG + chr5_4:55996066-55996085 Msa0858540:five_prime_UTR 35.0%
TTCAACGTAAGCATATGTGT+CGG - chr5_4:55996112-55996131 None:intergenic 35.0%
ACTTACCAAACTATGAAGCA+CGG - chr5_4:55996163-55996182 None:intergenic 35.0%
TACATTAGTCATGCTGTCAT+GGG - chr5_4:55996227-55996246 None:intergenic 35.0%
TTACATTAGTCATGCTGTCA+TGG - chr5_4:55996228-55996247 None:intergenic 35.0%
CGATGAATACACAGAAATGA+AGG - chr5_4:55996501-55996520 None:intergenic 35.0%
! ACCTTTTCACGTATTATGGA+GGG - chr5_4:55996825-55996844 None:intergenic 35.0%
! TGTGACCTTTTCACGTATTA+TGG - chr5_4:55996829-55996848 None:intergenic 35.0%
TATGGCCAGAAAAACGTTAA+GGG + chr5_4:55996873-55996892 Msa0858540:CDS 35.0%
CAATTTCAGATATCACACGA+TGG + chr5_4:55996954-55996973 Msa0858540:CDS 35.0%
TACGAAGATTGCAGTTACAT+CGG + chr5_4:55996981-55997000 Msa0858540:CDS 35.0%
! TCAGTTCGCGAAATTTTTGA+AGG - chr5_4:55997266-55997285 None:intergenic 35.0%
! GAGTCTGGAATTGTAAATGA+TGG + chr5_4:55997472-55997491 Msa0858540:CDS 35.0%
TACGGTCAGAAAATGGTTAA+AGG + chr5_4:55997511-55997530 Msa0858540:CDS 35.0%
TTAAAGGCAACACAAATCCA+AGG + chr5_4:55997527-55997546 Msa0858540:CDS 35.0%
ATAAAAGCTAGTGTGTACCT+TGG - chr5_4:55997547-55997566 None:intergenic 35.0%
!! TTCTCAACATGCTTTTTGAC+GGG - chr5_4:55997727-55997746 None:intergenic 35.0%
!! CTTCTCAACATGCTTTTTGA+CGG - chr5_4:55997728-55997747 None:intergenic 35.0%
AACTGTCATAACTACCTATG+AGG + chr5_4:55997765-55997784 Msa0858540:CDS 35.0%
ACTGTCATAACTACCTATGA+GGG + chr5_4:55997766-55997785 Msa0858540:CDS 35.0%
! CGAATTGGAGTCAATTTTGT+AGG - chr5_4:55997841-55997860 None:intergenic 35.0%
!!! TTGTTTCACTTTTAAGACCC+TGG - chr5_4:55997882-55997901 None:intergenic 35.0%
ATCGCTGATAGTATCTTCTT+TGG - chr5_4:55997938-55997957 None:intergenic 35.0%
CAAACTTGAATCACGTATCA+TGG - chr5_4:55997962-55997981 None:intergenic 35.0%
TCATGTTCACTTAATCTGCA+TGG - chr5_4:55997991-55998010 None:intergenic 35.0%
TAAATAGTTGGAAGTCACGT+AGG + chr5_4:55998099-55998118 Msa0858540:three_prime_UTR 35.0%
GAGAAGGTTAGAATAGGAAT+GGG - chr5_4:55998160-55998179 None:intergenic 35.0%
AGAGAAGGTTAGAATAGGAA+TGG - chr5_4:55998161-55998180 None:intergenic 35.0%
GGAAAAGAGAAGGTTAGAAT+AGG - chr5_4:55998166-55998185 None:intergenic 35.0%
CTAGAAAAAGGGAAAAGAGA+AGG - chr5_4:55998176-55998195 None:intergenic 35.0%
!!! CATTTTTAGTTGTCTGTTCC+AGG + chr5_4:55998198-55998217 Msa0858540:three_prime_UTR 35.0%
!!! CATCGGTGATTTTTGTTTTG+TGG + chr5_4:55998300-55998319 Msa0858540:three_prime_UTR 35.0%
GAGTTTGTGTTGTGTTTGGA+TGG - chr5_4:55994770-55994789 None:intergenic 40.0%
GCATTACCACGAAGAAATTG+AGG - chr5_4:55994866-55994885 None:intergenic 40.0%
! AGACTGTTTAAGGGCTTGTT+TGG + chr5_4:55995481-55995500 Msa0858540:intron 40.0%
! GTTTAAGGGCTTGTTTGGAT+TGG + chr5_4:55995486-55995505 Msa0858540:intron 40.0%
! AATGTGTTGATGGAGGGAAT+AGG + chr5_4:55995738-55995757 Msa0858540:intron 40.0%
ATTGTAAGGATCGGCCAATT+TGG - chr5_4:55995820-55995839 None:intergenic 40.0%
! CACTTGCTGCTGTACTTTAT+CGG - chr5_4:55996619-55996638 None:intergenic 40.0%
AATTCATGCGAAGGAGTCTT+GGG - chr5_4:55996774-55996793 None:intergenic 40.0%
ACCCTCCATAATACGTGAAA+AGG + chr5_4:55996821-55996840 Msa0858540:CDS 40.0%
! GACCTTTTCACGTATTATGG+AGG - chr5_4:55996826-55996845 None:intergenic 40.0%
CGTGAAAAGGTCACAAAAGA+TGG + chr5_4:55996834-55996853 Msa0858540:CDS 40.0%
GGCTATAAATGGCGAAAGTA+TGG + chr5_4:55996855-55996874 Msa0858540:CDS 40.0%
GTATGGCCAGAAAAACGTTA+AGG + chr5_4:55996872-55996891 Msa0858540:CDS 40.0%
ATGGCCAGAAAAACGTTAAG+GGG + chr5_4:55996874-55996893 Msa0858540:CDS 40.0%
! ACGGTGTTTGATTCAGGTTT+GGG - chr5_4:55997020-55997039 None:intergenic 40.0%
! TACGGTGTTTGATTCAGGTT+TGG - chr5_4:55997021-55997040 None:intergenic 40.0%
TGTTCTTCCTGTTGTCGAAA+AGG + chr5_4:55997055-55997074 Msa0858540:CDS 40.0%
GTTCTTCCTGTTGTCGAAAA+GGG + chr5_4:55997056-55997075 Msa0858540:CDS 40.0%
!! GCGAAATTTTTGAAGGTGGA+TGG - chr5_4:55997259-55997278 None:intergenic 40.0%
!! GTTCGCGAAATTTTTGAAGG+TGG - chr5_4:55997263-55997282 None:intergenic 40.0%
AATAGTAACAACGATGCGAC+TGG + chr5_4:55997400-55997419 Msa0858540:CDS 40.0%
!! TTGTAAATGATGGGTATCGC+TGG + chr5_4:55997482-55997501 Msa0858540:CDS 40.0%
TGAATTGGTATGGTACATCG+TGG + chr5_4:55997569-55997588 Msa0858540:intron 40.0%
!! CGAGCATCGATAGTAATTTC+TGG - chr5_4:55997692-55997711 None:intergenic 40.0%
!! TCTCAACATGCTTTTTGACG+GGG - chr5_4:55997726-55997745 None:intergenic 40.0%
!! GACAGTTGTTGTGTTTTGAG+AGG - chr5_4:55997752-55997771 None:intergenic 40.0%
ATGATCATGTTGACCCTCAT+AGG - chr5_4:55997782-55997801 None:intergenic 40.0%
!!! TTTTAAGACCCTGGTTAGGA+AGG - chr5_4:55997873-55997892 None:intergenic 40.0%
!!! TCACTTTTAAGACCCTGGTT+AGG - chr5_4:55997877-55997896 None:intergenic 40.0%
GCAACAGATGTTGTTGTACT+AGG - chr5_4:55998018-55998037 None:intergenic 40.0%
!!! GGTGATTTTTGTTTTGTGGC+TGG + chr5_4:55998304-55998323 Msa0858540:three_prime_UTR 40.0%
GGATTAGGCAATTTGGTCTG+TGG + chr5_4:55995127-55995146 Msa0858540:intron 45.0%
! GCATGGACACTTTTCGGATT+AGG + chr5_4:55996072-55996091 Msa0858540:five_prime_UTR 45.0%
!! GGACACTTTTCGGATTAGGT+CGG + chr5_4:55996076-55996095 Msa0858540:five_prime_UTR 45.0%
GGTATCCGTGCTTCATAGTT+TGG + chr5_4:55996155-55996174 Msa0858540:five_prime_UTR 45.0%
TCATGCTGTCATGGGCATAT+GGG - chr5_4:55996219-55996238 None:intergenic 45.0%
GATCACTCATCAATAGCAGC+AGG - chr5_4:55996336-55996355 None:intergenic 45.0%
AGGGAGATTGCATTGTCACA+AGG + chr5_4:55996648-55996667 Msa0858540:CDS 45.0%
GGGAGATTGCATTGTCACAA+GGG + chr5_4:55996649-55996668 Msa0858540:CDS 45.0%
! AGTGTCGGATTCTGATGCTA+TGG + chr5_4:55996695-55996714 Msa0858540:CDS 45.0%
! TGATGCTATGGCTTGTGACT+TGG + chr5_4:55996707-55996726 Msa0858540:CDS 45.0%
ATTCATGCGAAGGAGTCTTG+GGG - chr5_4:55996773-55996792 None:intergenic 45.0%
CAATTCATGCGAAGGAGTCT+TGG - chr5_4:55996775-55996794 None:intergenic 45.0%
ATCAGAGGCAATTCATGCGA+AGG - chr5_4:55996783-55996802 None:intergenic 45.0%
GAATTGCCTCTGATGCAATC+TGG + chr5_4:55996789-55996808 Msa0858540:CDS 45.0%
TCTTGACCAGATTGCATCAG+AGG - chr5_4:55996798-55996817 None:intergenic 45.0%
! CACTCCCCTTAACGTTTTTC+TGG - chr5_4:55996881-55996900 None:intergenic 45.0%
! CGGTGTTTGATTCAGGTTTG+GGG - chr5_4:55997019-55997038 None:intergenic 45.0%
TGAATCAAACACCGTACCAC+CGG + chr5_4:55997025-55997044 Msa0858540:CDS 45.0%
ACAGGAAGAACACGATCAAC+CGG - chr5_4:55997047-55997066 None:intergenic 45.0%
! TCAGCAAAAGAGGATTGGTG+TGG - chr5_4:55997083-55997102 None:intergenic 45.0%
CCACATCAGCAAAAGAGGAT+TGG - chr5_4:55997088-55997107 None:intergenic 45.0%
! CCAATCCTCTTTTGCTGATG+TGG + chr5_4:55997085-55997104 Msa0858540:CDS 45.0%
! TCCTCTTTTGCTGATGTGGA+AGG + chr5_4:55997089-55997108 Msa0858540:CDS 45.0%
ACCTTCCACATCAGCAAAAG+AGG - chr5_4:55997093-55997112 None:intergenic 45.0%
TTTGCTGATGTGGAAGGTCA+AGG + chr5_4:55997095-55997114 Msa0858540:CDS 45.0%
ACTGGAGCTGATGTGTCAAA+TGG + chr5_4:55997418-55997437 Msa0858540:CDS 45.0%
GTTCGAACTACAAGTGAGTC+TGG + chr5_4:55997457-55997476 Msa0858540:CDS 45.0%
GCGCAAATACGGTCAGAAAA+TGG + chr5_4:55997504-55997523 Msa0858540:CDS 45.0%
!! ATTGCAATTCAGCTTTGGGC+AGG - chr5_4:55998045-55998064 None:intergenic 45.0%
GTCATGCTGTCATGGGCATA+TGG - chr5_4:55996220-55996239 None:intergenic 50.0%
GACAATGCAATCTCCCTCTG+TGG - chr5_4:55996645-55996664 None:intergenic 50.0%
GGTGGTACGGTGTTTGATTC+AGG - chr5_4:55997026-55997045 None:intergenic 50.0%
AACACGATCAACCGGTGGTA+CGG - chr5_4:55997039-55997058 None:intergenic 50.0%
! TGTGGTCCCTTTTCGACAAC+AGG - chr5_4:55997065-55997084 None:intergenic 50.0%
GAAGGTGGATGGAAACGCAA+AGG - chr5_4:55997248-55997267 None:intergenic 50.0%
CGCGAACTGACGAGTCAAAA+CGG + chr5_4:55997276-55997295 Msa0858540:CDS 50.0%
TACTATCGATGCTCGAGTCC+CGG + chr5_4:55997697-55997716 Msa0858540:CDS 50.0%
!! ATGCTTTTTGACGGGGCATC+CGG - chr5_4:55997719-55997738 None:intergenic 50.0%
CATGATCATGTACCTCCCAC+TGG + chr5_4:55997793-55997812 Msa0858540:CDS 50.0%
TCATGGACACCTCTTCCAGT+GGG - chr5_4:55997811-55997830 None:intergenic 50.0%
TTCATGGACACCTCTTCCAG+TGG - chr5_4:55997812-55997831 None:intergenic 50.0%
AAGACCCTGGTTAGGAAGGA+TGG - chr5_4:55997869-55997888 None:intergenic 50.0%
GACTTAGGGCCCGTTTCGAT+TGG - chr5_4:55995700-55995719 None:intergenic 55.0%
AGCAGCAAGTGAGTCCACAG+AGG + chr5_4:55996628-55996647 Msa0858540:CDS 55.0%
GCAGCAAGTGAGTCCACAGA+GGG + chr5_4:55996629-55996648 Msa0858540:CDS 55.0%
CTCTGTGAATGTTGCTCGGG+CGG - chr5_4:55996750-55996769 None:intergenic 55.0%
GGGCTCTGTGAATGTTGCTC+GGG - chr5_4:55996753-55996772 None:intergenic 55.0%
GGGGCTCTGTGAATGTTGCT+CGG - chr5_4:55996754-55996773 None:intergenic 55.0%
GGAAGAACACGATCAACCGG+TGG - chr5_4:55997044-55997063 None:intergenic 55.0%
GTATGAAGCTGTGCCTCGAC+AGG + chr5_4:55997217-55997236 Msa0858540:CDS 55.0%
! GGGTATCGCTGGCGCAAATA+CGG + chr5_4:55997493-55997512 Msa0858540:CDS 55.0%
!! TGCTTTTTGACGGGGCATCC+GGG - chr5_4:55997718-55997737 None:intergenic 55.0%
CATGTACCTCCCACTGGAAG+AGG + chr5_4:55997799-55997818 Msa0858540:CDS 55.0%
GGAAGGATGGTCGCTCGAAT+TGG - chr5_4:55997856-55997875 None:intergenic 55.0%
AGCGACCATCCTTCCTAACC+AGG + chr5_4:55997861-55997880 Msa0858540:CDS 55.0%
GCGACCATCCTTCCTAACCA+GGG + chr5_4:55997862-55997881 Msa0858540:CDS 55.0%
! CGCAAAGGTGTGACCTGTCG+AGG - chr5_4:55997233-55997252 None:intergenic 60.0%
TGGACACCTCTTCCAGTGGG+AGG - chr5_4:55997808-55997827 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 55994735 55998345 55994735 ID=Msa0858540;Name=Msa0858540
chr5_4 mRNA 55994735 55998345 55994735 ID=Msa0858540-mRNA-1;Parent=Msa0858540;Name=Msa0858540-mRNA-1;_AED=0.26;_eAED=0.26;_QI=374|1|1|1|0.6|0.5|6|289|387
chr5_4 exon 55994735 55994878 55994735 ID=Msa0858540-mRNA-1:exon:17124;Parent=Msa0858540-mRNA-1
chr5_4 exon 55996037 55996176 55996037 ID=Msa0858540-mRNA-1:exon:17125;Parent=Msa0858540-mRNA-1
chr5_4 exon 55996486 55997116 55996486 ID=Msa0858540-mRNA-1:exon:17126;Parent=Msa0858540-mRNA-1
chr5_4 exon 55997201 55997300 55997201 ID=Msa0858540-mRNA-1:exon:17127;Parent=Msa0858540-mRNA-1
chr5_4 exon 55997390 55997548 55997390 ID=Msa0858540-mRNA-1:exon:17128;Parent=Msa0858540-mRNA-1
chr5_4 exon 55997693 55998345 55997693 ID=Msa0858540-mRNA-1:exon:17129;Parent=Msa0858540-mRNA-1
chr5_4 five_prime_UTR 55994735 55994878 55994735 ID=Msa0858540-mRNA-1:five_prime_utr;Parent=Msa0858540-mRNA-1
chr5_4 five_prime_UTR 55996037 55996176 55996037 ID=Msa0858540-mRNA-1:five_prime_utr;Parent=Msa0858540-mRNA-1
chr5_4 five_prime_UTR 55996486 55996575 55996486 ID=Msa0858540-mRNA-1:five_prime_utr;Parent=Msa0858540-mRNA-1
chr5_4 CDS 55996576 55997116 55996576 ID=Msa0858540-mRNA-1:cds;Parent=Msa0858540-mRNA-1
chr5_4 CDS 55997201 55997300 55997201 ID=Msa0858540-mRNA-1:cds;Parent=Msa0858540-mRNA-1
chr5_4 CDS 55997390 55997548 55997390 ID=Msa0858540-mRNA-1:cds;Parent=Msa0858540-mRNA-1
chr5_4 CDS 55997693 55998056 55997693 ID=Msa0858540-mRNA-1:cds;Parent=Msa0858540-mRNA-1
chr5_4 three_prime_UTR 55998057 55998345 55998057 ID=Msa0858540-mRNA-1:three_prime_utr;Parent=Msa0858540-mRNA-1
Gene Sequence

>Msa0858540

ATGGTTTTGTCACAAGAAAGTGCTGATCACAACGTTTCTTCCGATAAAGTACAGCAGCAAGTGAGTCCACAGAGGGAGATTGCATTGTCACAAGGGATTGATGATGTAGCTAAAAATGAAGTGTCGGATTCTGATGCTATGGCTTGTGACTTGGTATCGTCACACTCTTCACCGCCCGAGCAACATTCACAGAGCCCCAAGACTCCTTCGCATGAATTGCCTCTGATGCAATCTGGTCAAGACAAACCCTCCATAATACGTGAAAAGGTCACAAAAGATGGCTATAAATGGCGAAAGTATGGCCAGAAAAACGTTAAGGGGAGTGAATTTAAAAGGAGTTATTACAAATGTACTTATTCAGACTGCCCTGCAAGAAAACAATTTCAGATATCACACGATGGAAACTACGAAGATTGCAGTTACATCGGTCAGCATAATCACCCCAAACCTGAATCAAACACCGTACCACCGGTTGATCGTGTTCTTCCTGTTGTCGAAAAGGGACCACACCAATCCTCTTTTGCTGATGTGGAAGGTCAAGAAAATTCATCTGTTGAGTATGAAGCTGTGCCTCGACAGGTCACACCTTTGCGTTTCCATCCACCTTCAAAAATTTCGCGAACTGACGAGTCAAAACGGCTGAAGAAAGACAATAGTAACAACGATGCGACTGGAGCTGATGTGTCAAATGGTGAATCTCGCGTTATTGTTCGAACTACAAGTGAGTCTGGAATTGTAAATGATGGGTATCGCTGGCGCAAATACGGTCAGAAAATGGTTAAAGGCAACACAAATCCAAGAAATTACTATCGATGCTCGAGTCCCGGATGCCCCGTCAAAAAGCATGTTGAGAAGTCCTCTCAAAACACAACAACTGTCATAACTACCTATGAGGGTCAACATGATCATGTACCTCCCACTGGAAGAGGTGTCCATGAAAATACACCTACAAAATTGACTCCAATTCGAGCGACCATCCTTCCTAACCAGGGTCTTAAAAGTGAAACAAATGAGGAAGAGCAACAAAATGAAGATGCTAGTACCAAAGAAGATACTATCAGCGATGCCATGATACGTGATTCAAGTTTGAAAGTTCCATGCAGATTAAGTGAACATGATACTCCTAGTACAACAACATCTGTTGCAGAACCTGCCCAAAGCTGA
Protein sequence

>Msa0858540

MVLSQESADHNVSSDKVQQQVSPQREIALSQGIDDVAKNEVSDSDAMACDLVSSHSSPPEQHSQSPKTPSHELPLMQSGQDKPSIIREKVTKDGYKWRKYGQKNVKGSEFKRSYYKCTYSDCPARKQFQISHDGNYEDCSYIGQHNHPKPESNTVPPVDRVLPVVEKGPHQSSFADVEGQENSSVEYEAVPRQVTPLRFHPPSKISRTDESKRLKKDNSNNDATGADVSNGESRVIVRTTSESGIVNDGYRWRKYGQKMVKGNTNPRNYYRCSSPGCPVKKHVEKSSQNTTTVITTYEGQHDHVPPTGRGVHENTPTKLTPIRATILPNQGLKSETNEEEQQNEDASTKEDTISDAMIRDSSLKVPCRLSEHDTPSTTTSVAEPAQS*