Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860540 | XP_003616973.1 | 93.671 | 158 | 9 | 1 | 10 | 167 | 1 | 157 | 3.42e-100 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860540 | G7KCM2 | 93.671 | 158 | 9 | 1 | 10 | 167 | 1 | 157 | 1.64e-100 | 295 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0820230 | Msa0860540 | 0.803039 | 4.215456e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860540 | MtrunA17_Chr5g0439711 | 93.671 | 158 | 9 | 1 | 10 | 167 | 1 | 157 | 3.15e-104 | 295 |
| Msa0860540 | MtrunA17_Chr7g0264841 | 71.930 | 114 | 31 | 1 | 55 | 168 | 192 | 304 | 3.15e-50 | 163 |
| Msa0860540 | MtrunA17_Chr8g0391991 | 63.964 | 111 | 39 | 1 | 57 | 167 | 72 | 181 | 2.05e-42 | 139 |
| Msa0860540 | MtrunA17_Chr6g0471571 | 65.714 | 70 | 23 | 1 | 57 | 126 | 72 | 140 | 1.11e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTCATTCAACACTTCT+TGG | 0.240484 | 5_4:+59305631 | Msa0860530:intron |
| TAGTGTTGTTACTATGCTAT+TGG | 0.309426 | 5_4:-59305859 | Msa0860540:CDS |
| TAACGAATATATTGATTTAG+AGG | 0.335320 | 5_4:-59305817 | Msa0860540:CDS |
| AGTGTTGTTACTATGCTATT+GGG | 0.364474 | 5_4:-59305858 | Msa0860540:CDS |
| TTGAGAATCGCCAATCTGTT+TGG | 0.376213 | 5_4:+59305546 | Msa0860530:intron |
| TTCTTCTTTGATGCGGAGCT+TGG | 0.385578 | 5_4:+59305792 | Msa0860530:intron |
| TACGTTATAAAGCAATCAAT+TGG | 0.415866 | 5_4:-59305581 | Msa0860540:CDS |
| TCTTCCGTTGATTAAGAAGA+AGG | 0.423371 | 5_4:-59305520 | Msa0860540:CDS |
| GGAAGGAAATTCTCAAGAAA+TGG | 0.435903 | 5_4:-59305655 | Msa0860540:CDS |
| TTGCCTTAGAAGGTTATACT+TGG | 0.469789 | 5_4:-59305983 | Msa0860540:intron |
| TAAGAAGAAGGATTTCCTCT+TGG | 0.487475 | 5_4:-59305508 | Msa0860540:CDS |
| TGCTATTGGGTGCAATAGCT+TGG | 0.489850 | 5_4:-59305845 | Msa0860540:CDS |
| AATATTAATCAAACTATACA+TGG | 0.495516 | 5_4:+59310003 | Msa0860530:intron |
| GACTGAAAATCCAAACAGAT+TGG | 0.507299 | 5_4:-59305556 | Msa0860540:CDS |
| AAATCCTTCTTCTTAATCAA+CGG | 0.553574 | 5_4:+59305516 | Msa0860530:intron |
| TAGTACTTTCTTCTTTGATG+CGG | 0.586763 | 5_4:+59305785 | Msa0860530:intron |
| AAAACGTAAAAGAAATGAAG+AGG | 0.599015 | 5_4:-59305916 | Msa0860540:CDS |
| TGAAGAGGTGGCAGAGCTCG+AGG | 0.600263 | 5_4:-59305901 | Msa0860540:CDS |
| ACGTAAAAGAAATGAAGAGG+TGG | 0.634856 | 5_4:-59305913 | Msa0860540:CDS |
| CAATTCTATTATGAGAGACG+TGG | 0.645435 | 5_4:-59305721 | Msa0860540:CDS |
| CTCATAACATAGAAGCCAAG+AGG | 0.654647 | 5_4:+59305493 | Msa0860530:intron |
| TTAAGAAGAGAGACGAAGAG+AGG | 0.660591 | 5_4:-59305749 | Msa0860540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTCTATTTTTATATAAA+AGG | - | chr5_4:59306588-59306607 | Msa0860540:intron | 10.0% |
| !!! | TAAAATCTCTAAAAATAATA+AGG | - | chr5_4:59306847-59306866 | Msa0860540:intron | 10.0% |
| !!! | TTTTTTGCTAATAATAAAAA+TGG | - | chr5_4:59306998-59307017 | Msa0860540:intron | 10.0% |
| !!! | ATTTGAAGAATTTTTTTAAA+AGG | - | chr5_4:59307587-59307606 | Msa0860540:intron | 10.0% |
| !! | TTGTCAAAAATTATTAATGA+TGG | + | chr5_4:59305741-59305760 | Msa0860530:intron | 15.0% |
| !! | TTTCTTTAAACAATATTCTT+AGG | - | chr5_4:59306224-59306243 | Msa0860540:intron | 15.0% |
| !!! | TAATTTTTTTTCTCAAATAG+AGG | - | chr5_4:59306363-59306382 | Msa0860540:intron | 15.0% |
| !!! | TTATTAGTATACTTTGATTT+AGG | - | chr5_4:59306560-59306579 | Msa0860540:intron | 15.0% |
| !!! | TATTAGTATACTTTGATTTA+GGG | - | chr5_4:59306561-59306580 | Msa0860540:intron | 15.0% |
| !! | AATAAGGTTAATTAAGTAAA+TGG | - | chr5_4:59306863-59306882 | Msa0860540:intron | 15.0% |
| !!! | TGAAATTTTGAATATTCATA+TGG | - | chr5_4:59307107-59307126 | Msa0860540:intron | 15.0% |
| !! | GAAAAGTTTGTATATTTATA+AGG | + | chr5_4:59307167-59307186 | Msa0860530:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr5_4:59307228-59307247 | Msa0860530:intron | 15.0% |
| !!! | TTTTTATGAAAAATTTTTGG+TGG | + | chr5_4:59307406-59307425 | Msa0860530:intron | 15.0% |
| !!! | ATGAATTTTTAAATTTTTGG+TGG | + | chr5_4:59307433-59307452 | Msa0860530:intron | 15.0% |
| !! | TAAACTCAAATTCATATAAT+TGG | + | chr5_4:59307517-59307536 | Msa0860530:intron | 15.0% |
| !!! | AATTTTGGTTTTATTTTTGA+AGG | - | chr5_4:59308868-59308887 | Msa0860540:intron | 15.0% |
| !! | TAAAGAAGAAAATGAGAAAT+TGG | - | chr5_4:59305514-59305533 | Msa0860540:CDS | 20.0% |
| !! | TACATTTGTATGAACAATAT+AGG | + | chr5_4:59305911-59305930 | Msa0860530:intron | 20.0% |
| !! | TATATTGTTCATACAAATGT+AGG | - | chr5_4:59305910-59305929 | Msa0860540:CDS | 20.0% |
| !!! | TTTTTGTTAAGTAGCTTATA+AGG | - | chr5_4:59306277-59306296 | Msa0860540:intron | 20.0% |
| !!! | AACTTTTTTAGAAGCTTATT+TGG | - | chr5_4:59306393-59306412 | Msa0860540:intron | 20.0% |
| !!! | ACTTTTTTAGAAGCTTATTT+GGG | - | chr5_4:59306394-59306413 | Msa0860540:intron | 20.0% |
| !! | ATTATTCATATTTACTTAGC+CGG | + | chr5_4:59306474-59306493 | Msa0860530:intron | 20.0% |
| !! | CAATATTCTGAACATTTATA+GGG | + | chr5_4:59306890-59306909 | Msa0860530:intron | 20.0% |
| !! | ACAATATTCTGAACATTTAT+AGG | + | chr5_4:59306891-59306910 | Msa0860530:intron | 20.0% |
| !!! | AAAATTTCCGTCAAAATTTT+TGG | + | chr5_4:59306982-59307001 | Msa0860530:intron | 20.0% |
| !!! | ATATGGATTATTCATTTAAG+CGG | - | chr5_4:59307124-59307143 | Msa0860540:intron | 20.0% |
| !!! | GTTTGAAGGAAAATTTTATA+GGG | + | chr5_4:59307198-59307217 | Msa0860530:intron | 20.0% |
| !!! | AGTTTGAAGGAAAATTTTAT+AGG | + | chr5_4:59307199-59307218 | Msa0860530:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr5_4:59307229-59307248 | Msa0860530:intron | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr5_4:59307232-59307251 | Msa0860540:intron | 20.0% |
| !! | ATTGACATATTTACAGAAAT+TGG | - | chr5_4:59307623-59307642 | Msa0860540:intron | 20.0% |
| !! | AATGAAAAATACCTTTCAAT+CGG | + | chr5_4:59307897-59307916 | Msa0860530:intron | 20.0% |
| !!! | CTAAAAATGGTTTTGAATTT+TGG | - | chr5_4:59308853-59308872 | Msa0860540:intron | 20.0% |
| !! | TTAAGAAATTGAAATATAGC+TGG | + | chr5_4:59309010-59309029 | Msa0860530:intron | 20.0% |
| !! | TCTTAACTATGATGATAAAT+TGG | - | chr5_4:59309024-59309043 | Msa0860540:intron | 20.0% |
| !! | AAACATAATAACAAACAGAA+TGG | + | chr5_4:59309400-59309419 | Msa0860530:intron | 20.0% |
| !!! | TAACGAATATATTGATTTAG+AGG | - | chr5_4:59309678-59309697 | Msa0860540:intron | 20.0% |
| !!! | TTTTTTTAGTAACTTGTAGA+AGG | + | chr5_4:59309816-59309835 | Msa0860530:CDS | 20.0% |
| !! | TTCTACAAGTTACTAAAAAA+AGG | - | chr5_4:59309815-59309834 | Msa0860540:intron | 20.0% |
| ! | TATGTTCATGAATGTATTCA+AGG | - | chr5_4:59305643-59305662 | Msa0860540:CDS | 25.0% |
| ! | CATATTGACAATGGAAATTT+GGG | + | chr5_4:59305838-59305857 | Msa0860530:intron | 25.0% |
| ! | AAAAATCGAATGTTACACTA+AGG | - | chr5_4:59306008-59306027 | Msa0860540:intron | 25.0% |
| ! | AAGAAAATTGAATCTTATCC+TGG | + | chr5_4:59306257-59306276 | Msa0860530:intron | 25.0% |
| !!! | TTTTTTTTCTCAAATAGAGG+AGG | - | chr5_4:59306366-59306385 | Msa0860540:intron | 25.0% |
| !! | AGGATTAAGAGATTTTTCTA+TGG | + | chr5_4:59306440-59306459 | Msa0860530:intron | 25.0% |
| ! | TTATTCATATTTACTTAGCC+GGG | + | chr5_4:59306473-59306492 | Msa0860530:intron | 25.0% |
| !! | ATATAAAAGGTGCAATAAAG+AGG | - | chr5_4:59306601-59306620 | Msa0860540:intron | 25.0% |
| !! | TTTTCTCAATTTCAAAACAC+AGG | + | chr5_4:59306709-59306728 | Msa0860530:intron | 25.0% |
| !!! | TAGTGTGGTTTAATTTTGTA+AGG | + | chr5_4:59306921-59306940 | Msa0860530:intron | 25.0% |
| !!! | TCTATCTTTGTTTCATGTTT+TGG | - | chr5_4:59307939-59307958 | Msa0860540:intron | 25.0% |
| ! | ATTCAAGAGCAAATGTTATT+TGG | - | chr5_4:59308524-59308543 | Msa0860540:intron | 25.0% |
| !! | AAGAAGCAATTTCGTAATTT+TGG | - | chr5_4:59308619-59308638 | Msa0860540:intron | 25.0% |
| ! | TATGATGATAAATTGGTTGA+TGG | - | chr5_4:59309031-59309050 | Msa0860540:intron | 25.0% |
| !! | TGACTTATTATGATGATGAA+TGG | - | chr5_4:59309092-59309111 | Msa0860540:intron | 25.0% |
| ! | AAAAAGAAACAAAATGCATG+AGG | + | chr5_4:59309347-59309366 | Msa0860530:intron | 25.0% |
| ! | GCTAAGGAATTAGTAAAATA+TGG | + | chr5_4:59309436-59309455 | Msa0860530:intron | 25.0% |
| !! | TATTTTACTAATTCCTTAGC+TGG | - | chr5_4:59309436-59309455 | Msa0860540:intron | 25.0% |
| ! | AAGGCAAGAAAATGAAAAAA+GGG | + | chr5_4:59309499-59309518 | Msa0860530:intron | 25.0% |
| ! | TAAGGCAAGAAAATGAAAAA+AGG | + | chr5_4:59309500-59309519 | Msa0860530:intron | 25.0% |
| ! | TTATACTTGGCAAAAAGAAA+TGG | - | chr5_4:59309525-59309544 | Msa0860540:intron | 25.0% |
| ! | TATACTTGGCAAAAAGAAAT+GGG | - | chr5_4:59309526-59309545 | Msa0860540:intron | 25.0% |
| ! | AAAACGTAAAAGAAATGAAG+AGG | - | chr5_4:59309579-59309598 | Msa0860540:intron | 25.0% |
| ! | ACAAGTTACTAAAAAAAGGA+TGG | - | chr5_4:59309819-59309838 | Msa0860540:intron | 25.0% |
| ! | TACGTTATAAAGCAATCAAT+TGG | - | chr5_4:59309914-59309933 | Msa0860540:intron | 25.0% |
| ! | AAATCCTTCTTCTTAATCAA+CGG | + | chr5_4:59309982-59310001 | Msa0860530:intron | 25.0% |
| TTGATAGACAAAAACTTACG+TGG | + | chr5_4:59305579-59305598 | Msa0860530:intron | 30.0% | |
| AATTTGGGTCAATATTTGCA+TGG | + | chr5_4:59305823-59305842 | Msa0860530:intron | 30.0% | |
| GCATATTGACAATGGAAATT+TGG | + | chr5_4:59305839-59305858 | Msa0860530:intron | 30.0% | |
| GTATATGAGCATATTGACAA+TGG | + | chr5_4:59305847-59305866 | Msa0860530:intron | 30.0% | |
| TGTCAATATGCTCATATACA+AGG | - | chr5_4:59305848-59305867 | Msa0860540:CDS | 30.0% | |
| TTGTATGAACAATATAGGTG+CGG | + | chr5_4:59305906-59305925 | Msa0860530:intron | 30.0% | |
| ATATTCTTAGGACAATTACC+AGG | - | chr5_4:59306236-59306255 | Msa0860540:intron | 30.0% | |
| TGTTAAGTAGCTTATAAGGA+TGG | - | chr5_4:59306281-59306300 | Msa0860540:intron | 30.0% | |
| GTTAAGTAGCTTATAAGGAT+GGG | - | chr5_4:59306282-59306301 | Msa0860540:intron | 30.0% | |
| TAATATGTATGACCTATCGT+AGG | + | chr5_4:59306345-59306364 | Msa0860530:intron | 30.0% | |
| CTTATTTGGGTAAAAAGATC+AGG | - | chr5_4:59306407-59306426 | Msa0860540:intron | 30.0% | |
| TTAATCCTATCAAATAAGCC+CGG | - | chr5_4:59306452-59306471 | Msa0860540:intron | 30.0% | |
| AAACTCAAACTCAATCAAAG+TGG | - | chr5_4:59306727-59306746 | Msa0860540:intron | 30.0% | |
| AACTCAAACTCAATCAAAGT+GGG | - | chr5_4:59306728-59306747 | Msa0860540:intron | 30.0% | |
| AAACCAATCCTAATTTGACA+GGG | + | chr5_4:59306758-59306777 | Msa0860530:intron | 30.0% | |
| TAAACCAATCCTAATTTGAC+AGG | + | chr5_4:59306759-59306778 | Msa0860530:intron | 30.0% | |
| !! | TGTCAAATTAGGATTGGTTT+AGG | - | chr5_4:59306758-59306777 | Msa0860540:intron | 30.0% |
| TACCTACTTACTACACATTA+AGG | - | chr5_4:59306811-59306830 | Msa0860540:intron | 30.0% | |
| ! | ACGTTTTCCTTTGACATTTT+AGG | - | chr5_4:59306954-59306973 | Msa0860540:intron | 30.0% |
| ! | CGTTTTCCTTTGACATTTTA+GGG | - | chr5_4:59306955-59306974 | Msa0860540:intron | 30.0% |
| ! | TTAGGGACCAAAAATTTTGA+CGG | - | chr5_4:59306972-59306991 | Msa0860540:intron | 30.0% |
| TATAGGGACTAAAAGTTTGA+AGG | + | chr5_4:59307212-59307231 | Msa0860530:intron | 30.0% | |
| !! | GCTATGTTTTTAATTGTTGC+TGG | - | chr5_4:59307997-59308016 | Msa0860540:intron | 30.0% |
| TTTAGTAATTACCACTAGTG+TGG | - | chr5_4:59308219-59308238 | Msa0860540:intron | 30.0% | |
| !! | AAAACCACATTTTAACCCAA+AGG | + | chr5_4:59308376-59308395 | Msa0860530:intron | 30.0% |
| TGAAAAACAAGAACCGTAAT+AGG | - | chr5_4:59308656-59308675 | Msa0860540:intron | 30.0% | |
| CCACTAAGAAACAAAAACAA+GGG | + | chr5_4:59308793-59308812 | Msa0860530:intron | 30.0% | |
| !!! | CCTTGTTTTTGTTTCTTAGT+GGG | - | chr5_4:59308791-59308810 | Msa0860540:intron | 30.0% |
| !!! | CTTGTTTTTGTTTCTTAGTG+GGG | - | chr5_4:59308792-59308811 | Msa0860540:intron | 30.0% |
| !!! | TTGTTTTTGTTTCTTAGTGG+GGG | - | chr5_4:59308793-59308812 | Msa0860540:intron | 30.0% |
| TTAATAGAAGACAATGCCTA+TGG | + | chr5_4:59308900-59308919 | Msa0860530:intron | 30.0% | |
| ! | ATAGGCATTGTCTTCTATTA+AGG | - | chr5_4:59308899-59308918 | Msa0860540:intron | 30.0% |
| GTTATGGAAAACTTCAAAAG+TGG | - | chr5_4:59308933-59308952 | Msa0860540:intron | 30.0% | |
| !! | AAACTTCAAAAGTGGATTGT+AGG | - | chr5_4:59308941-59308960 | Msa0860540:intron | 30.0% |
| !! | AAATTGGTTGATGGTTTATG+AGG | - | chr5_4:59309040-59309059 | Msa0860540:intron | 30.0% |
| CTGATAGTTCAGAATTTACA+TGG | - | chr5_4:59309185-59309204 | Msa0860540:intron | 30.0% | |
| !! | CATTTTGTTTCTTTTTGAGC+TGG | - | chr5_4:59309351-59309370 | Msa0860540:intron | 30.0% |
| ! | TTTCATTTTCTTGCCTTAGA+AGG | - | chr5_4:59309502-59309521 | Msa0860540:intron | 30.0% |
| !!! | CGTTTTCTTGAAAGTATTGA+AGG | + | chr5_4:59309565-59309584 | Msa0860530:intron | 30.0% |
| ! | TAGTGTTGTTACTATGCTAT+TGG | - | chr5_4:59309636-59309655 | Msa0860540:intron | 30.0% |
| ! | AGTGTTGTTACTATGCTATT+GGG | - | chr5_4:59309637-59309656 | Msa0860540:intron | 30.0% |
| TAGTACTTTCTTCTTTGATG+CGG | + | chr5_4:59309713-59309732 | Msa0860530:intron | 30.0% | |
| GTTACTAAAAAAAGGATGGA+AGG | - | chr5_4:59309823-59309842 | Msa0860540:intron | 30.0% | |
| TCATTTCATTCAACACTTCT+TGG | + | chr5_4:59309867-59309886 | Msa0860530:CDS | 30.0% | |
| AGACAAAAACTTACGTGGAA+AGG | + | chr5_4:59305574-59305593 | Msa0860530:intron | 35.0% | |
| !!! | TTGCTGATTTTACATCACGA+TGG | - | chr5_4:59305604-59305623 | Msa0860540:CDS | 35.0% |
| ACATCACGATGGATATACAT+AGG | - | chr5_4:59305615-59305634 | Msa0860540:CDS | 35.0% | |
| ATTGCTATAGATTCAGCAAG+AGG | + | chr5_4:59305669-59305688 | Msa0860530:intron | 35.0% | |
| AATGATGGTAACATGATTCC+AGG | + | chr5_4:59305726-59305745 | Msa0860530:intron | 35.0% | |
| TGATTGGATATTGCGTTGAA+GGG | + | chr5_4:59305882-59305901 | Msa0860530:intron | 35.0% | |
| TTGATTGGATATTGCGTTGA+AGG | + | chr5_4:59305883-59305902 | Msa0860530:intron | 35.0% | |
| TTCGAAACGAGATTGAGTAT+TGG | - | chr5_4:59306644-59306663 | Msa0860540:intron | 35.0% | |
| !! | ACGAGATTGAGTATTGGTTT+AGG | - | chr5_4:59306650-59306669 | Msa0860540:intron | 35.0% |
| !! | CGAGATTGAGTATTGGTTTA+GGG | - | chr5_4:59306651-59306670 | Msa0860540:intron | 35.0% |
| !! | ATTGAGTATTGGTTTAGGGT+GGG | - | chr5_4:59306655-59306674 | Msa0860540:intron | 35.0% |
| ACTCAAACTCAATCAAAGTG+GGG | - | chr5_4:59306729-59306748 | Msa0860540:intron | 35.0% | |
| AAACCCTGTCAAATTAGGAT+TGG | - | chr5_4:59306752-59306771 | Msa0860540:intron | 35.0% | |
| GTCCTTAATGTGTAGTAAGT+AGG | + | chr5_4:59306816-59306835 | Msa0860530:intron | 35.0% | |
| TTTGGTCCCTAAAATGTCAA+AGG | + | chr5_4:59306964-59306983 | Msa0860530:intron | 35.0% | |
| ATCTTCTTCAGGCATAGAAT+GGG | + | chr5_4:59307771-59307790 | Msa0860530:intron | 35.0% | |
| TATCTTCTTCAGGCATAGAA+TGG | + | chr5_4:59307772-59307791 | Msa0860530:intron | 35.0% | |
| TGCTTCGATTTATCTTCTTC+AGG | + | chr5_4:59307782-59307801 | Msa0860530:intron | 35.0% | |
| GTTGTGTAGCAAGTGTTAAA+AGG | - | chr5_4:59308334-59308353 | Msa0860540:intron | 35.0% | |
| ACTCATAAACTCATTGCCTT+TGG | - | chr5_4:59308357-59308376 | Msa0860540:intron | 35.0% | |
| CTCATAAACTCATTGCCTTT+GGG | - | chr5_4:59308358-59308377 | Msa0860540:intron | 35.0% | |
| ! | ATTGCCTTTGGGTTAAAATG+TGG | - | chr5_4:59308369-59308388 | Msa0860540:intron | 35.0% |
| ! | TGGTTTTCAACTCATTTGTG+TGG | - | chr5_4:59308389-59308408 | Msa0860540:intron | 35.0% |
| ! | AAGAGCAAATGTTATTTGGC+AGG | - | chr5_4:59308528-59308547 | Msa0860540:intron | 35.0% |
| AAAACAAGAACCGTAATAGG+AGG | - | chr5_4:59308659-59308678 | Msa0860540:intron | 35.0% | |
| CTCAATCAAACCTCCTATTA+CGG | + | chr5_4:59308672-59308691 | Msa0860530:intron | 35.0% | |
| TAATAGGAGGTTTGATTGAG+TGG | - | chr5_4:59308672-59308691 | Msa0860540:intron | 35.0% | |
| !!! | GGTTTGATTGAGTGGTTTTT+TGG | - | chr5_4:59308680-59308699 | Msa0860540:intron | 35.0% |
| !! | TTTCGAGTGGAACTCAATTT+TGG | - | chr5_4:59308707-59308726 | Msa0860540:intron | 35.0% |
| GTCTATGCTAAGGCATATTA+GGG | + | chr5_4:59308762-59308781 | Msa0860530:intron | 35.0% | |
| TGTCTATGCTAAGGCATATT+AGG | + | chr5_4:59308763-59308782 | Msa0860530:intron | 35.0% | |
| !!! | CCCTTGTTTTTGTTTCTTAG+TGG | - | chr5_4:59308790-59308809 | Msa0860540:intron | 35.0% |
| CCCACTAAGAAACAAAAACA+AGG | + | chr5_4:59308794-59308813 | Msa0860530:intron | 35.0% | |
| ! | TCCTGAAGTGCTTCTAAAAA+TGG | - | chr5_4:59308840-59308859 | Msa0860540:intron | 35.0% |
| !!! | ACCATTTTTAGAAGCACTTC+AGG | + | chr5_4:59308844-59308863 | Msa0860530:intron | 35.0% |
| !! | TTTTTGAAGGCAATGACCAT+AGG | - | chr5_4:59308881-59308900 | Msa0860540:intron | 35.0% |
| TAAGGCAGACAAGAATGTTA+TGG | - | chr5_4:59308917-59308936 | Msa0860540:intron | 35.0% | |
| TGTAGGTTTATCTCTATCTG+TGG | - | chr5_4:59308958-59308977 | Msa0860540:intron | 35.0% | |
| TCACAACATGAAGCATACAA+CGG | + | chr5_4:59309136-59309155 | Msa0860530:intron | 35.0% | |
| TGTATGCTTCATGTTGTGAA+TGG | - | chr5_4:59309137-59309156 | Msa0860540:intron | 35.0% | |
| CAGAATTTACATGGTGTTCT+TGG | - | chr5_4:59309194-59309213 | Msa0860540:intron | 35.0% | |
| TTGCCTTAGAAGGTTATACT+TGG | - | chr5_4:59309512-59309531 | Msa0860540:intron | 35.0% | |
| TTGCCAAGTATAACCTTCTA+AGG | + | chr5_4:59309518-59309537 | Msa0860530:intron | 35.0% | |
| ACGTAAAAGAAATGAAGAGG+TGG | - | chr5_4:59309582-59309601 | Msa0860540:intron | 35.0% | |
| CAATTCTATTATGAGAGACG+TGG | - | chr5_4:59309774-59309793 | Msa0860540:intron | 35.0% | |
| GGAAGGAAATTCTCAAGAAA+TGG | - | chr5_4:59309840-59309859 | Msa0860540:intron | 35.0% | |
| GACTGAAAATCCAAACAGAT+TGG | - | chr5_4:59309939-59309958 | Msa0860540:intron | 35.0% | |
| ! | TCTTCCGTTGATTAAGAAGA+AGG | - | chr5_4:59309975-59309994 | Msa0860540:intron | 35.0% |
| TAAGAAGAAGGATTTCCTCT+TGG | - | chr5_4:59309987-59310006 | Msa0860540:intron | 35.0% | |
| ATTTCCACTCTACTTGACCA+TGG | - | chr5_4:59305687-59305706 | Msa0860540:CDS | 40.0% | |
| ATTACCATGGTCAAGTAGAG+TGG | + | chr5_4:59305694-59305713 | Msa0860530:intron | 40.0% | |
| ACTCTACTTGACCATGGTAA+TGG | - | chr5_4:59305693-59305712 | Msa0860540:CDS | 40.0% | |
| CAGGTAAAGAACCATTACCA+TGG | + | chr5_4:59305707-59305726 | Msa0860530:intron | 40.0% | |
| !! | CATGGTAATGGTTCTTTACC+TGG | - | chr5_4:59305705-59305724 | Msa0860540:CDS | 40.0% |
| GGTCAATATTTGCATGGTAC+AGG | + | chr5_4:59305817-59305836 | Msa0860530:intron | 40.0% | |
| ACAATATAGGTGCGGTTGAT+TGG | + | chr5_4:59305898-59305917 | Msa0860530:intron | 40.0% | |
| !! | TAGGGCATTGTATTTCGGTT+TGG | + | chr5_4:59306314-59306333 | Msa0860530:intron | 40.0% |
| !! | GGTTGTAGGGCATTGTATTT+CGG | + | chr5_4:59306319-59306338 | Msa0860530:intron | 40.0% |
| !! | GATTGAGTATTGGTTTAGGG+TGG | - | chr5_4:59306654-59306673 | Msa0860540:intron | 40.0% |
| CAGGTACAAGACAAGTAACA+GGG | + | chr5_4:59306690-59306709 | Msa0860530:intron | 40.0% | |
| ACAGGTACAAGACAAGTAAC+AGG | + | chr5_4:59306691-59306710 | Msa0860530:intron | 40.0% | |
| ! | ATTGGTTTAGGTGATAACCG+TGG | - | chr5_4:59306770-59306789 | Msa0860540:intron | 40.0% |
| TTGGTTTAGGTGATAACCGT+GGG | - | chr5_4:59306771-59306790 | Msa0860540:intron | 40.0% | |
| GTCACAAGGACTAAATAGTG+TGG | + | chr5_4:59306936-59306955 | Msa0860530:intron | 40.0% | |
| TGTCAAAGGAAAACGTCACA+AGG | + | chr5_4:59306950-59306969 | Msa0860530:intron | 40.0% | |
| GATAGAGAGAGAAGAACACT+CGG | + | chr5_4:59307728-59307747 | Msa0860530:intron | 40.0% | |
| ! | ATCGAAGCAGATCTAGAACT+AGG | - | chr5_4:59307793-59307812 | Msa0860540:intron | 40.0% |
| TGCAATGTTGTCCGATTGAA+AGG | - | chr5_4:59307883-59307902 | Msa0860540:intron | 40.0% | |
| CTAGTGATAGTTAACCTACG+AGG | - | chr5_4:59308071-59308090 | Msa0860540:intron | 40.0% | |
| ATTAGTGTTGTGTCCATTGC+CGG | - | chr5_4:59308252-59308271 | Msa0860540:intron | 40.0% | |
| ACATGTCAGCTATAAAGCAC+CGG | + | chr5_4:59308274-59308293 | Msa0860530:intron | 40.0% | |
| ACAACGACACTAATGACCAA+AGG | + | chr5_4:59308314-59308333 | Msa0860530:intron | 40.0% | |
| !!! | GTTTTTTGGTGTGTTTCGAG+TGG | - | chr5_4:59308694-59308713 | Msa0860540:intron | 40.0% |
| GGACTGAAGTTTCTGATTGA+AGG | - | chr5_4:59308728-59308747 | Msa0860540:intron | 40.0% | |
| GGCAATGTTTGTCTATGCTA+AGG | + | chr5_4:59308772-59308791 | Msa0860530:intron | 40.0% | |
| TCTATCTGTGGTTTCTTGTG+TGG | - | chr5_4:59308970-59308989 | Msa0860540:intron | 40.0% | |
| GATGGTTTATGAGGAAGTAG+AGG | - | chr5_4:59309049-59309068 | Msa0860540:intron | 40.0% | |
| !! | TTGTTTCTTTTTGAGCTGGC+TGG | - | chr5_4:59309355-59309374 | Msa0860540:intron | 40.0% |
| AGCAATACAATGAGTGGTCA+GGG | + | chr5_4:59309471-59309490 | Msa0860530:intron | 40.0% | |
| AAGCAATACAATGAGTGGTC+AGG | + | chr5_4:59309472-59309491 | Msa0860530:intron | 40.0% | |
| GCTGAAAGCAATACAATGAG+TGG | + | chr5_4:59309477-59309496 | Msa0860530:intron | 40.0% | |
| TTAAGAAGAGAGACGAAGAG+AGG | - | chr5_4:59309746-59309765 | Msa0860540:intron | 40.0% | |
| TTGAGAATCGCCAATCTGTT+TGG | + | chr5_4:59309952-59309971 | Msa0860530:intron | 40.0% | |
| CTATCGTAGGCTAGGTTGTA+GGG | + | chr5_4:59306332-59306351 | Msa0860530:intron | 45.0% | |
| TGTATGACCTATCGTAGGCT+AGG | + | chr5_4:59306340-59306359 | Msa0860530:intron | 45.0% | |
| CTTAGCCGGGCTTATTTGAT+AGG | + | chr5_4:59306460-59306479 | Msa0860530:intron | 45.0% | |
| TGGGGAAACCCTGTCAAATT+AGG | - | chr5_4:59306747-59306766 | Msa0860540:intron | 45.0% | |
| GACATCAAAACTCGTACCCA+CGG | + | chr5_4:59306790-59306809 | Msa0860530:intron | 45.0% | |
| GCAAACGAATGGGAAGAGAA+AGG | + | chr5_4:59307661-59307680 | Msa0860530:intron | 45.0% | |
| GATAGTTAACCTACGAGGCA+TGG | - | chr5_4:59308076-59308095 | Msa0860540:intron | 45.0% | |
| GTAGCGTATCAAAGGATGAC+AGG | + | chr5_4:59308185-59308204 | Msa0860530:intron | 45.0% | |
| CTTTGATACGCTACGTAGCA+CGG | - | chr5_4:59308191-59308210 | Msa0860540:intron | 45.0% | |
| TACCACTAGTGTGGATGTGT+CGG | - | chr5_4:59308228-59308247 | Msa0860540:intron | 45.0% | |
| ! | CTAATGACCAAAGGTGTGTC+TGG | + | chr5_4:59308305-59308324 | Msa0860530:intron | 45.0% |
| ACTCATTTGTGTGGTTGCTC+TGG | - | chr5_4:59308398-59308417 | Msa0860540:intron | 45.0% | |
| CTCATTTGTGTGGTTGCTCT+GGG | - | chr5_4:59308399-59308418 | Msa0860540:intron | 45.0% | |
| GTTCGGGGGATTATCTACAT+TGG | + | chr5_4:59308426-59308445 | Msa0860530:intron | 45.0% | |
| ! | TGAATGGTTCTGTTATCCGC+TGG | - | chr5_4:59309108-59309127 | Msa0860540:intron | 45.0% |
| TGCTATTGGGTGCAATAGCT+TGG | - | chr5_4:59309650-59309669 | Msa0860540:intron | 45.0% | |
| TTCTTCTTTGATGCGGAGCT+TGG | + | chr5_4:59309706-59309725 | Msa0860530:intron | 45.0% | |
| !! | AATAAATTTAAATATTGAAA+AGG | + | chr5_4:59306545-59306564 | Msa0860530:intron | 5.0% |
| !!! | TTTTTTGAAATAATTAAATA+TGG | - | chr5_4:59307372-59307391 | Msa0860540:intron | 5.0% |
| !!! | TTTTTTTTATGAAAAATTTT+TGG | + | chr5_4:59307409-59307428 | Msa0860530:intron | 5.0% |
| !!! | AATATGAATTTTTAAATTTT+TGG | + | chr5_4:59307436-59307455 | Msa0860530:intron | 5.0% |
| CCTATCGTAGGCTAGGTTGT+AGG | + | chr5_4:59306333-59306352 | Msa0860530:intron | 50.0% | |
| CCTACAACCTAGCCTACGAT+AGG | - | chr5_4:59306330-59306349 | Msa0860540:intron | 50.0% | |
| ! | GAATGGGAAGAGAAAGGCGT+GGG | + | chr5_4:59307655-59307674 | Msa0860530:intron | 50.0% |
| AGAGAGACGCGCAAACGAAT+GGG | + | chr5_4:59307671-59307690 | Msa0860530:intron | 50.0% | |
| GTATCACCGTCCGTGTATGT+CGG | + | chr5_4:59308105-59308124 | Msa0860530:intron | 50.0% | |
| CGTGCTACGTAGCGTATCAA+AGG | + | chr5_4:59308193-59308212 | Msa0860530:intron | 50.0% | |
| TACCGACACATCCACACTAG+TGG | + | chr5_4:59308233-59308252 | Msa0860530:intron | 50.0% | |
| !! | CAGCTATAAAGCACCGGCAA+TGG | + | chr5_4:59308268-59308287 | Msa0860530:intron | 50.0% |
| TCAGATGCCAGACACACCTT+TGG | - | chr5_4:59308295-59308314 | Msa0860540:intron | 50.0% | |
| TCAACTCCTAGCACCGTGTT+GGG | + | chr5_4:59308460-59308479 | Msa0860530:intron | 50.0% | |
| GAAGCATACAACGGAACCAG+CGG | + | chr5_4:59309127-59309146 | Msa0860530:intron | 50.0% | |
| AGGGTAAGCATCACCAGCTA+AGG | + | chr5_4:59309452-59309471 | Msa0860530:intron | 50.0% | |
| CGAATGGGAAGAGAAAGGCG+TGG | + | chr5_4:59307656-59307675 | Msa0860530:intron | 55.0% | |
| GAGAGAGACGCGCAAACGAA+TGG | + | chr5_4:59307672-59307691 | Msa0860530:intron | 55.0% | |
| GGCATGGACTCCGACATACA+CGG | - | chr5_4:59308092-59308111 | Msa0860540:intron | 55.0% | |
| TGGACTCCGACATACACGGA+CGG | - | chr5_4:59308096-59308115 | Msa0860540:intron | 55.0% | |
| TTGGGTCACAAGGGGAGTTC+GGG | + | chr5_4:59308442-59308461 | Msa0860530:intron | 55.0% | |
| GTTGGGTCACAAGGGGAGTT+CGG | + | chr5_4:59308443-59308462 | Msa0860530:intron | 55.0% | |
| ACTCCCCTTGTGACCCAACA+CGG | - | chr5_4:59308444-59308463 | Msa0860540:intron | 55.0% | |
| AGCACCGTGTTGGGTCACAA+GGG | + | chr5_4:59308451-59308470 | Msa0860530:intron | 55.0% | |
| TAGCACCGTGTTGGGTCACA+AGG | + | chr5_4:59308452-59308471 | Msa0860530:intron | 55.0% | |
| TTGTGACCCAACACGGTGCT+AGG | - | chr5_4:59308451-59308470 | Msa0860540:intron | 55.0% | |
| GTCAACTCCTAGCACCGTGT+TGG | + | chr5_4:59308461-59308480 | Msa0860530:intron | 55.0% | |
| ! | AGTGGGGGAGAGTGTGTGAA+TGG | - | chr5_4:59308808-59308827 | Msa0860540:intron | 55.0% |
| TGTCGGAGTCCATGCCTCGT+AGG | + | chr5_4:59308088-59308107 | Msa0860530:intron | 60.0% | |
| TGGGTCACAAGGGGAGTTCG+GGG | + | chr5_4:59308441-59308460 | Msa0860530:intron | 60.0% | |
| GCACCGTGTTGGGTCACAAG+GGG | + | chr5_4:59308450-59308469 | Msa0860530:intron | 60.0% | |
| TGAAGAGGTGGCAGAGCTCG+AGG | - | chr5_4:59309594-59309613 | Msa0860540:intron | 60.0% | |
| GGGTCACAAGGGGAGTTCGG+GGG | + | chr5_4:59308440-59308459 | Msa0860530:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 59305494 | 59310023 | 59305494 | ID=Msa0860540;Name=Msa0860540 |
| chr5_4 | mRNA | 59305494 | 59310023 | 59305494 | ID=Msa0860540-mRNA-1;Parent=Msa0860540;Name=Msa0860540-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.5|1|1|2|0|168 |
| chr5_4 | exon | 59310017 | 59310023 | 59310017 | ID=Msa0860540-mRNA-1:exon:18207;Parent=Msa0860540-mRNA-1 |
| chr5_4 | exon | 59305494 | 59305993 | 59305494 | ID=Msa0860540-mRNA-1:exon:18206;Parent=Msa0860540-mRNA-1 |
| chr5_4 | CDS | 59310017 | 59310023 | 59310017 | ID=Msa0860540-mRNA-1:cds;Parent=Msa0860540-mRNA-1 |
| chr5_4 | CDS | 59305494 | 59305993 | 59305494 | ID=Msa0860540-mRNA-1:cds;Parent=Msa0860540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
