Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860610 | XP_003616976.1 | 98.424 | 571 | 9 | 0 | 1 | 571 | 1 | 571 | 0.0 | 1171 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860610 | sp|Q92890|UFD1_HUMAN | 38.889 | 180 | 91 | 3 | 91 | 270 | 43 | 203 | 4.65e-27 | 114 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860610 | G7KCM5 | 98.424 | 571 | 9 | 0 | 1 | 571 | 1 | 571 | 0.0 | 1171 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0739770 | Msa0860610 | 0.826834 | 2.181936e-54 | -8.615850e-47 |
Msa0782610 | Msa0860610 | 0.860984 | 1.410877e-63 | -8.615850e-47 |
Msa0820200 | Msa0860610 | 0.858431 | 8.279234e-63 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860610 | MtrunA17_Chr5g0439731 | 98.424 | 571 | 9 | 0 | 1 | 571 | 1 | 571 | 0.0 | 1171 |
Msa0860610 | MtrunA17_Chr8g0391701 | 38.122 | 181 | 85 | 4 | 90 | 266 | 32 | 189 | 8.26e-29 | 117 |
Msa0860610 | MtrunA17_Chr4g0031801 | 42.520 | 127 | 69 | 1 | 140 | 266 | 13 | 135 | 1.50e-25 | 105 |
Msa0860610 | MtrunA17_Chr4g0031781 | 41.732 | 127 | 70 | 1 | 140 | 266 | 13 | 135 | 6.13e-25 | 104 |
Msa0860610 | MtrunA17_Chr4g0031811 | 40.157 | 127 | 72 | 1 | 140 | 266 | 13 | 135 | 5.20e-23 | 98.6 |
Msa0860610 | MtrunA17_Chr3g0141211 | 28.846 | 156 | 79 | 4 | 411 | 565 | 9 | 133 | 2.42e-12 | 66.2 |
Msa0860610 | MtrunA17_Chr5g0427911 | 28.387 | 155 | 79 | 5 | 411 | 564 | 9 | 132 | 1.28e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860610 | AT4G15420.2 | 65.499 | 571 | 184 | 4 | 1 | 570 | 124 | 682 | 0.0 | 803 |
Msa0860610 | AT4G15420.1 | 65.499 | 571 | 184 | 4 | 1 | 570 | 1 | 559 | 0.0 | 800 |
Msa0860610 | AT2G29070.2 | 42.246 | 187 | 87 | 4 | 91 | 276 | 28 | 194 | 2.77e-33 | 129 |
Msa0860610 | AT2G29070.1 | 41.209 | 182 | 86 | 4 | 96 | 276 | 1 | 162 | 4.02e-31 | 122 |
Msa0860610 | AT2G21270.5 | 40.449 | 178 | 85 | 6 | 90 | 266 | 32 | 189 | 1.78e-30 | 122 |
Msa0860610 | AT2G21270.2 | 40.449 | 178 | 85 | 6 | 90 | 266 | 32 | 189 | 1.78e-30 | 122 |
Msa0860610 | AT2G21270.4 | 40.449 | 178 | 85 | 6 | 90 | 266 | 32 | 189 | 1.78e-30 | 122 |
Msa0860610 | AT2G21270.1 | 40.449 | 178 | 85 | 6 | 90 | 266 | 32 | 189 | 1.78e-30 | 122 |
Msa0860610 | AT4G38930.2 | 39.037 | 187 | 95 | 4 | 90 | 276 | 32 | 199 | 2.48e-30 | 121 |
Msa0860610 | AT4G38930.3 | 39.037 | 187 | 95 | 4 | 90 | 276 | 32 | 199 | 2.48e-30 | 121 |
Msa0860610 | AT4G38930.4 | 39.037 | 187 | 95 | 4 | 90 | 276 | 32 | 199 | 2.49e-30 | 121 |
Msa0860610 | AT4G38930.1 | 39.037 | 187 | 95 | 4 | 90 | 276 | 32 | 199 | 2.49e-30 | 121 |
Msa0860610 | AT2G21270.3 | 40.113 | 177 | 87 | 5 | 90 | 266 | 53 | 210 | 3.01e-30 | 122 |
Msa0860610 | AT1G09920.1 | 29.193 | 161 | 82 | 3 | 405 | 564 | 3 | 132 | 6.08e-13 | 68.2 |
Msa0860610 | AT2G29070.3 | 42.647 | 68 | 39 | 0 | 209 | 276 | 11 | 78 | 7.36e-12 | 65.1 |
Find 148 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGAAAATCCTCCTCTTTC+AGG | 0.143052 | 5_4:+59416587 | None:intergenic |
ATGTTTCTTACATATCTTAA+AGG | 0.172958 | 5_4:-59413145 | Msa0860610:three_prime_UTR |
TTCTACAAAGAATCATAATT+TGG | 0.177000 | 5_4:+59413169 | None:intergenic |
GAAAACTTGAACACAAATTA+AGG | 0.198776 | 5_4:-59416478 | Msa0860610:CDS |
GTAAGCATTACATACCTTCT+AGG | 0.232572 | 5_4:-59415917 | Msa0860610:CDS |
GAAATGAAATAAGTGATTAA+TGG | 0.249009 | 5_4:+59418240 | None:intergenic |
CAATTCCCCTCCCAACAATT+AGG | 0.264309 | 5_4:+59416960 | None:intergenic |
ACAATTACACAGAGAGAAAA+TGG | 0.266918 | 5_4:-59418139 | Msa0860610:exon |
ATTGGTGTAAACGGATTTAA+AGG | 0.282536 | 5_4:-59416056 | Msa0860610:CDS |
GACTTTGATTCTCAGCTCTA+AGG | 0.312180 | 5_4:-59416108 | Msa0860610:CDS |
AGCTTTCCAGCAGGCAGAAT+TGG | 0.313607 | 5_4:-59415772 | Msa0860610:CDS |
AGTACTTGAGAAAGAGAAAA+TGG | 0.328339 | 5_4:-59415700 | Msa0860610:intron |
AATGCAGCTTACTAGAACTC+TGG | 0.370099 | 5_4:+59412992 | None:intergenic |
CACAACAAACGCACTTGCCT+GGG | 0.372580 | 5_4:+59413119 | None:intergenic |
GCACAACAAACGCACTTGCC+TGG | 0.374699 | 5_4:+59413118 | None:intergenic |
TTGTTTCGAGGATTGCCTTA+TGG | 0.381012 | 5_4:+59416555 | None:intergenic |
TGATTGAAGTCCGCTATGTT+TGG | 0.387670 | 5_4:-59416640 | Msa0860610:CDS |
TTGTTGTGAAGCATTACATC+TGG | 0.387956 | 5_4:-59413312 | Msa0860610:three_prime_UTR |
GAGTGGTCTTCTCATGATAT+TGG | 0.388666 | 5_4:-59416137 | Msa0860610:CDS |
TCGAGGATTGCCTTATGGTT+TGG | 0.390171 | 5_4:+59416560 | None:intergenic |
ATAGAACTTAAAAGAAAGAT+TGG | 0.396183 | 5_4:-59413281 | Msa0860610:three_prime_UTR |
CGCTATGTTTGGCTTCCAAA+AGG | 0.401774 | 5_4:-59416629 | Msa0860610:CDS |
ATCATCTTCCGTGTCATCAA+TGG | 0.403538 | 5_4:-59415967 | Msa0860610:CDS |
TAGAACTTAAAAGAAAGATT+GGG | 0.404919 | 5_4:-59413280 | Msa0860610:three_prime_UTR |
TTCTGATTTACCAAACCATA+AGG | 0.405158 | 5_4:-59416570 | Msa0860610:CDS |
ACTTATAGCATTGGTGTAAA+CGG | 0.424284 | 5_4:-59416065 | Msa0860610:CDS |
GCATTGTGATGGTGTGCATT+TGG | 0.425118 | 5_4:-59412974 | Msa0860610:three_prime_UTR |
TCATCTTCCGTGTCATCAAT+GGG | 0.426538 | 5_4:-59415966 | Msa0860610:CDS |
AAAACGGGAACAACCCATTC+AGG | 0.427142 | 5_4:-59416758 | Msa0860610:CDS |
TGAATTCTAAAACTCCTGAA+TGG | 0.430305 | 5_4:+59416744 | None:intergenic |
TGGGTCTCCCTCCTCATGTA+TGG | 0.432563 | 5_4:-59416703 | Msa0860610:CDS |
ATGCAAGAAAACCTAATTGT+TGG | 0.432810 | 5_4:-59416971 | Msa0860610:CDS |
AGATCTTTGAGCAGCTTCAA+TGG | 0.438447 | 5_4:+59417993 | None:intergenic |
AGATACTGACAAAGAGAAAA+CGG | 0.442108 | 5_4:-59416774 | Msa0860610:CDS |
TGGAGTTGTTCTTAGAATTG+AGG | 0.446426 | 5_4:-59415832 | Msa0860610:CDS |
TGATCATGGTGCGCTTGATA+AGG | 0.448669 | 5_4:-59416852 | Msa0860610:CDS |
TGCAAGAAAACCTAATTGTT+GGG | 0.448899 | 5_4:-59416970 | Msa0860610:CDS |
TCAGAGCACGAGAGTGTTTG+TGG | 0.455532 | 5_4:-59413467 | Msa0860610:CDS |
TAGTGGGAGTTCTATTATTG+AGG | 0.459089 | 5_4:-59416246 | Msa0860610:CDS |
CTGGAAGCTGTACCTTATCA+AGG | 0.459105 | 5_4:-59416923 | Msa0860610:CDS |
TTAGAATTCACTGCTGATGA+AGG | 0.467360 | 5_4:-59416731 | Msa0860610:CDS |
GTCTGTTCTGAGAAATCAAT+AGG | 0.467366 | 5_4:+59416386 | None:intergenic |
TTTACAGAATTGTCTGATCA+TGG | 0.469703 | 5_4:-59416866 | Msa0860610:CDS |
GATCATGGTGCGCTTGATAA+GGG | 0.473109 | 5_4:-59416851 | Msa0860610:CDS |
GATGCCCGTGACAGGTTAAG+AGG | 0.475693 | 5_4:-59413494 | Msa0860610:CDS |
TGTAGTGCAATAGTCCTAGA+AGG | 0.476451 | 5_4:+59415903 | None:intergenic |
TGTGGAGTTCCAAATACTGC+TGG | 0.478895 | 5_4:+59416344 | None:intergenic |
AAAACTTGAACACAAATTAA+GGG | 0.484583 | 5_4:-59416477 | Msa0860610:CDS |
GAATTCTAAAACTCCTGAAT+GGG | 0.487644 | 5_4:+59416745 | None:intergenic |
TAAGACTGTTAGTTTGTACT+TGG | 0.490990 | 5_4:+59416028 | None:intergenic |
GCTGCCGAAGACTTGTTTCG+AGG | 0.494454 | 5_4:+59416543 | None:intergenic |
AAAATCACATTCACTGTGGC+AGG | 0.496690 | 5_4:-59415803 | Msa0860610:CDS |
ACCTGTCAGCATGAAGGTTG+TGG | 0.498331 | 5_4:-59415852 | Msa0860610:CDS |
TTCAGTGATGTTGAAGGAGA+TGG | 0.500517 | 5_4:-59413411 | Msa0860610:CDS |
CAATCCTCGAAACAAGTCTT+CGG | 0.502772 | 5_4:-59416547 | Msa0860610:CDS |
CTGCAATGGATGCCCGTGAC+AGG | 0.502869 | 5_4:-59413502 | Msa0860610:CDS |
GATACTGACAAAGAGAAAAC+GGG | 0.504593 | 5_4:-59416773 | Msa0860610:CDS |
TTCATCAAGTGTATCGGTGT+TGG | 0.510825 | 5_4:-59416438 | Msa0860610:CDS |
CTTTCCTTCATCTACTGTAC+CGG | 0.511128 | 5_4:+59416319 | None:intergenic |
AACACCGATACACTTGATGA+AGG | 0.512373 | 5_4:+59416440 | None:intergenic |
TGCCGCTGAAGCTCAACTTA+AGG | 0.514396 | 5_4:-59417959 | Msa0860610:intron |
TCCATTGCAGAGCTTCCAGC+TGG | 0.515210 | 5_4:+59413515 | None:intergenic |
GCTATGTTTGGCTTCCAAAA+GGG | 0.517465 | 5_4:-59416628 | Msa0860610:CDS |
TTATCTCCACTACCTTGATA+AGG | 0.519679 | 5_4:+59416911 | None:intergenic |
TCCACAACCTTCATGCTGAC+AGG | 0.519691 | 5_4:+59415851 | None:intergenic |
TTTCAATTGACAATGGCACC+TGG | 0.520800 | 5_4:-59416280 | Msa0860610:CDS |
CAGATTGCTGTTCATCAGAA+AGG | 0.521420 | 5_4:-59413380 | Msa0860610:CDS |
TACATGAAGCTTACTGTAGC+AGG | 0.521859 | 5_4:-59415884 | Msa0860610:CDS |
GGAATAGAATTTACTTCACC+AGG | 0.523063 | 5_4:+59413076 | None:intergenic |
TGTGACCATGTTTGACAACT+TGG | 0.523643 | 5_4:+59413022 | None:intergenic |
ACAATCCTCTTAACCTGTCA+CGG | 0.525336 | 5_4:+59413489 | None:intergenic |
TTCCGTGTCATCAATGGGGT+TGG | 0.525545 | 5_4:-59415961 | Msa0860610:CDS |
TTTGTATGTATTGTCTACCA+TGG | 0.527203 | 5_4:-59413246 | Msa0860610:three_prime_UTR |
CACATTCACTGTGGCAGGTG+TGG | 0.527747 | 5_4:-59415798 | Msa0860610:CDS |
CGGCACGAAATTAGCCGCAA+GGG | 0.530156 | 5_4:+59413557 | None:intergenic |
GCTGTACCTTATCAAGGTAG+TGG | 0.534703 | 5_4:-59416917 | Msa0860610:CDS |
ACGAGAGTGTTTGTGGGTCA+AGG | 0.535726 | 5_4:-59413460 | Msa0860610:CDS |
TTGTATGTATTGTCTACCAT+GGG | 0.537136 | 5_4:-59413245 | Msa0860610:three_prime_UTR |
GACAATTCTGTAAAACAAGA+AGG | 0.537415 | 5_4:+59416875 | None:intergenic |
GCGGCACGAAATTAGCCGCA+AGG | 0.538583 | 5_4:+59413556 | None:intergenic |
TCCAGCTGGAAGCTCTGCAA+TGG | 0.540046 | 5_4:-59413516 | Msa0860610:CDS |
TCATCTACTGTACCGGTCTG+TGG | 0.543797 | 5_4:+59416326 | None:intergenic |
TAATCAAGGAAATGAAATTG+AGG | 0.547417 | 5_4:+59413055 | None:intergenic |
TGAACGTCCACAAGAATCAC+AGG | 0.548576 | 5_4:+59413430 | None:intergenic |
AGCAAGATTGAAACTCCAAA+AGG | 0.548705 | 5_4:-59418055 | Msa0860610:CDS |
GAAAACCTAATTGTTGGGAG+GGG | 0.550580 | 5_4:-59416965 | Msa0860610:CDS |
AGAAAACCTAATTGTTGGGA+GGG | 0.551698 | 5_4:-59416966 | Msa0860610:CDS |
GCAAAACTTCAACCTGAAAG+AGG | 0.552930 | 5_4:-59416599 | Msa0860610:CDS |
ATGCAGCTTACTAGAACTCT+GGG | 0.553945 | 5_4:+59412993 | None:intergenic |
TACCTTAAGTTGAGCTTCAG+CGG | 0.556136 | 5_4:+59417957 | None:intergenic |
CATGAGAAGACCACTCATGC+TGG | 0.557723 | 5_4:+59416144 | None:intergenic |
TGTTGTGAAGCATTACATCT+GGG | 0.557849 | 5_4:-59413311 | Msa0860610:three_prime_UTR |
CCCACTAGAAATTCTCTCCC+AGG | 0.558842 | 5_4:+59416262 | None:intergenic |
CAGAGCACGAGAGTGTTTGT+GGG | 0.559598 | 5_4:-59413466 | Msa0860610:CDS |
ACATAGCGGACTTCAATCAA+TGG | 0.560186 | 5_4:+59416644 | None:intergenic |
TGTGGCGATATGGTTCCAGC+TGG | 0.560904 | 5_4:-59413530 | Msa0860610:CDS |
ATCTGCCAAGTTGTCAAACA+TGG | 0.563342 | 5_4:-59413027 | Msa0860610:three_prime_UTR |
TTAGAATCAGAGACAAATGA+AGG | 0.564173 | 5_4:-59416218 | Msa0860610:CDS |
GAGCCACTTCAGTGCCCTTG+TGG | 0.570123 | 5_4:-59415726 | Msa0860610:CDS |
TGTTGTTGTTAAGTTCGTGT+TGG | 0.570261 | 5_4:+59418161 | None:intergenic |
ACTGCTGATGAAGGTTCAGT+GGG | 0.571768 | 5_4:-59416722 | Msa0860610:CDS |
CACTGCTGATGAAGGTTCAG+TGG | 0.573393 | 5_4:-59416723 | Msa0860610:CDS |
TGGACGTTCAGTGATGTTGA+AGG | 0.573883 | 5_4:-59413417 | Msa0860610:CDS |
ACATATCTTAAAGGAACCCC+AGG | 0.574705 | 5_4:-59413136 | Msa0860610:three_prime_UTR |
TTCAATTGACAATGGCACCT+GGG | 0.580166 | 5_4:-59416279 | Msa0860610:CDS |
AGAACTTAAAAGAAAGATTG+GGG | 0.582268 | 5_4:-59413279 | Msa0860610:three_prime_UTR |
AAAACCTTCATCAAGTGTAT+CGG | 0.584178 | 5_4:-59416444 | Msa0860610:CDS |
GTGTGGTCAAGCTTTCCAGC+AGG | 0.584674 | 5_4:-59415781 | Msa0860610:CDS |
CACTCATGCTGGTGTCGTGT+AGG | 0.585828 | 5_4:+59416155 | None:intergenic |
AAGCATCAGTTTGCCCCTTG+CGG | 0.586614 | 5_4:-59413571 | Msa0860610:CDS |
GGTTGGATACTGAACAATGT+AGG | 0.587698 | 5_4:-59415944 | Msa0860610:CDS |
CTACACGACACCAGCATGAG+TGG | 0.590981 | 5_4:-59416154 | Msa0860610:CDS |
AAATTATTCCATACATGAGG+AGG | 0.594349 | 5_4:+59416695 | None:intergenic |
CAATCCTCTTAACCTGTCAC+GGG | 0.595642 | 5_4:+59413490 | None:intergenic |
ATTCCACAAGGGCACTGAAG+TGG | 0.598606 | 5_4:+59415723 | None:intergenic |
GGTGCGGGGACTTATAGCAT+TGG | 0.601072 | 5_4:-59416074 | Msa0860610:CDS |
CAGACCGGTACAGTAGATGA+AGG | 0.602462 | 5_4:-59416323 | Msa0860610:CDS |
TCAGTTATCGTTGACTCACA+AGG | 0.603524 | 5_4:-59416816 | Msa0860610:CDS |
GGCACGAAATTAGCCGCAAG+GGG | 0.604282 | 5_4:+59413558 | None:intergenic |
AACGTTACCTGTCAGCATGA+AGG | 0.604821 | 5_4:-59415858 | Msa0860610:CDS |
CACAGTAGGCTGCTAACCCA+TGG | 0.604888 | 5_4:+59413229 | None:intergenic |
AACAAATTATTCCATACATG+AGG | 0.610239 | 5_4:+59416692 | None:intergenic |
ACTGCACCCTGTGATTCTTG+TGG | 0.615018 | 5_4:-59413437 | Msa0860610:CDS |
CAGCATGCTACACTTTCTCA+AGG | 0.618267 | 5_4:-59416524 | Msa0860610:CDS |
ACTGTGGCTGTATGACATTG+TGG | 0.621033 | 5_4:-59413212 | Msa0860610:three_prime_UTR |
TCTAGTAAGCTGCATTGTGA+TGG | 0.621624 | 5_4:-59412985 | Msa0860610:three_prime_UTR |
GAACCATATCGCCACAAAAG+CGG | 0.622465 | 5_4:+59413537 | None:intergenic |
CAATGTCATACAGCCACAGT+AGG | 0.626030 | 5_4:+59413215 | None:intergenic |
TTCTCAAGTACTATTCCACA+AGG | 0.627240 | 5_4:+59415711 | None:intergenic |
ATCCAACCCCATTGATGACA+CGG | 0.632329 | 5_4:+59415959 | None:intergenic |
CATGGGTTAGCAGCCTACTG+TGG | 0.637107 | 5_4:-59413228 | Msa0860610:three_prime_UTR |
GTATTTGGAACTCCACAGAC+CGG | 0.637611 | 5_4:-59416338 | Msa0860610:CDS |
TTATCGTTGACTCACAAGGA+GGG | 0.640289 | 5_4:-59416812 | Msa0860610:CDS |
AAGAAAACCTAATTGTTGGG+AGG | 0.645360 | 5_4:-59416967 | Msa0860610:CDS |
ACAACAAACGCACTTGCCTG+GGG | 0.645657 | 5_4:+59413120 | None:intergenic |
AATTATTCCATACATGAGGA+GGG | 0.646236 | 5_4:+59416696 | None:intergenic |
CCTGGGAGAGAATTTCTAGT+GGG | 0.655597 | 5_4:-59416262 | Msa0860610:CDS |
AAACTTCAACCTGAAAGAGG+AGG | 0.655997 | 5_4:-59416596 | Msa0860610:CDS |
ACCTGGGAGAGAATTTCTAG+TGG | 0.660457 | 5_4:-59416263 | Msa0860610:CDS |
GTTATCGTTGACTCACAAGG+AGG | 0.666496 | 5_4:-59416813 | Msa0860610:CDS |
CAGAAAGGCTAATTCTGATG+CGG | 0.669569 | 5_4:-59413365 | Msa0860610:exon |
AATTCTGTAAAACAAGAAGG+AGG | 0.679062 | 5_4:+59416878 | None:intergenic |
AACGATAACTGAAAGTACAT+CGG | 0.687946 | 5_4:+59416827 | None:intergenic |
TGTCGTGTAGGAAATATGAG+AGG | 0.709082 | 5_4:+59416167 | None:intergenic |
CATCTTCCGTGTCATCAATG+GGG | 0.720890 | 5_4:-59415965 | Msa0860610:CDS |
GTCGTGTAGGAAATATGAGA+GGG | 0.721636 | 5_4:+59416168 | None:intergenic |
TCTCAAGTACTATTCCACAA+GGG | 0.727795 | 5_4:+59415712 | None:intergenic |
GAACGTCCACAAGAATCACA+GGG | 0.732152 | 5_4:+59413431 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAATATTGTATTTGTAT+TGG | - | chr5_4:59417409-59417428 | Msa0860610:intron | 10.0% |
!!! | CTTTTTATTTTAATTTTGTT+AGG | - | chr5_4:59417563-59417582 | Msa0860610:intron | 10.0% |
!!! | TTGTAATTTTATTGGAATAT+AGG | - | chr5_4:59413801-59413820 | Msa0860610:intron | 15.0% |
!!! | TGTAATTTTATTGGAATATA+GGG | - | chr5_4:59413802-59413821 | Msa0860610:intron | 15.0% |
!! | TCAAATTTCAATATCATTAA+AGG | + | chr5_4:59413976-59413995 | None:intergenic | 15.0% |
!!! | TTTTTTTGATATTGTTCTTT+TGG | - | chr5_4:59415568-59415587 | Msa0860610:intron | 15.0% |
!!! | TATTTTTATTTTCTAACCTA+AGG | - | chr5_4:59416328-59416347 | Msa0860610:CDS | 15.0% |
!!! | TTTTAAATATAGGATCAATT+TGG | + | chr5_4:59416530-59416549 | None:intergenic | 15.0% |
!!! | ATCAAAAAGGTTTTAAATAT+AGG | + | chr5_4:59416540-59416559 | None:intergenic | 15.0% |
!!! | TATATTTAAAACCTTTTTGA+TGG | - | chr5_4:59416539-59416558 | Msa0860610:CDS | 15.0% |
!! | TAGTAAATATATAATGAATC+AGG | + | chr5_4:59417201-59417220 | None:intergenic | 15.0% |
!!! | TTTATTTTAATTTTGTTAGG+TGG | - | chr5_4:59417566-59417585 | Msa0860610:intron | 15.0% |
!! | GAAATGAAATAAGTGATTAA+TGG | + | chr5_4:59412929-59412948 | None:intergenic | 20.0% |
!!! | TAATTACTTTTAGGATGAAA+CGG | - | chr5_4:59413389-59413408 | Msa0860610:CDS | 20.0% |
!! | AAAATTCTTCTCTTATGTTT+AGG | + | chr5_4:59413472-59413491 | None:intergenic | 20.0% |
!! | ATTCCAATAAAATTACAACT+AGG | + | chr5_4:59413799-59413818 | None:intergenic | 20.0% |
!!! | AATTGTTTTTTATCGTTTAC+TGG | - | chr5_4:59414224-59414243 | Msa0860610:intron | 20.0% |
!! | AAAACTTGAACACAAATTAA+GGG | - | chr5_4:59414689-59414708 | Msa0860610:intron | 20.0% |
!!! | TACAAATTTTCAATTGACAA+TGG | - | chr5_4:59414879-59414898 | Msa0860610:intron | 20.0% |
!! | ATTATCAAACAATATTGAAC+AGG | - | chr5_4:59415680-59415699 | Msa0860610:intron | 20.0% |
!! | AACAACAACTATATTTCTTT+AGG | + | chr5_4:59416365-59416384 | None:intergenic | 20.0% |
!! | TTGATTTACATAAATCTTAG+CGG | - | chr5_4:59416390-59416409 | Msa0860610:CDS | 20.0% |
!! | TCCAAAAAATAATCATATAG+CGG | - | chr5_4:59416877-59416896 | Msa0860610:CDS | 20.0% |
!! | CAAATATGACAAAAAAAAAG+TGG | + | chr5_4:59417277-59417296 | None:intergenic | 20.0% |
!!! | AAATTCCTTTTTCTTATAGA+CGG | + | chr5_4:59417540-59417559 | None:intergenic | 20.0% |
!! | ATAGAACTTAAAAGAAAGAT+TGG | - | chr5_4:59417885-59417904 | Msa0860610:intron | 20.0% |
!! | TAGAACTTAAAAGAAAGATT+GGG | - | chr5_4:59417886-59417905 | Msa0860610:intron | 20.0% |
!! | TTCTACAAAGAATCATAATT+TGG | + | chr5_4:59418000-59418019 | None:intergenic | 20.0% |
!! | ATGTTTCTTACATATCTTAA+AGG | - | chr5_4:59418021-59418040 | Msa0860610:CDS | 20.0% |
! | AACAAATGTTCGTAATTAGT+TGG | - | chr5_4:59413326-59413345 | Msa0860610:three_prime_UTR | 25.0% |
!!! | AATTACTTTTAGGATGAAAC+GGG | - | chr5_4:59413390-59413409 | Msa0860610:CDS | 25.0% |
! | GATTGATGTCTTTATGAATT+AGG | - | chr5_4:59413436-59413455 | Msa0860610:CDS | 25.0% |
!! | GAATTTTTGTTCATGTTCAT+TGG | - | chr5_4:59413485-59413504 | Msa0860610:CDS | 25.0% |
! | CATTGAATAATTGATGTATC+TGG | + | chr5_4:59413542-59413561 | None:intergenic | 25.0% |
!! | AAGATACCATTTTATTAGCA+AGG | - | chr5_4:59413658-59413677 | Msa0860610:intron | 25.0% |
! | TGTATATAAGAAACCATTCA+AGG | + | chr5_4:59413923-59413942 | None:intergenic | 25.0% |
! | TCATATTTGTATTTGTAGCT+TGG | + | chr5_4:59414053-59414072 | None:intergenic | 25.0% |
! | TATTGTCATGTTAAAAACCT+AGG | + | chr5_4:59414124-59414143 | None:intergenic | 25.0% |
! | GAATTGAACATAGTAAACAA+AGG | + | chr5_4:59414161-59414180 | None:intergenic | 25.0% |
! | TTGTTTACTATGTTCAATTC+AGG | - | chr5_4:59414161-59414180 | Msa0860610:intron | 25.0% |
! | AACAAATTATTCCATACATG+AGG | + | chr5_4:59414477-59414496 | None:intergenic | 25.0% |
!!! | TGGAATAATTTGTTTTCTGA+AGG | - | chr5_4:59414483-59414502 | Msa0860610:intron | 25.0% |
! | GAAAACTTGAACACAAATTA+AGG | - | chr5_4:59414688-59414707 | Msa0860610:intron | 25.0% |
!!! | GTTTTTGGTTGAAATTATCT+TGG | + | chr5_4:59415166-59415185 | None:intergenic | 25.0% |
! | AGATAATTTCAACCAAAAAC+TGG | - | chr5_4:59415166-59415185 | Msa0860610:intron | 25.0% |
! | GATAATTTCAACCAAAAACT+GGG | - | chr5_4:59415167-59415186 | Msa0860610:intron | 25.0% |
! | ATAAATTAGGACAGACATAA+CGG | + | chr5_4:59415595-59415614 | None:intergenic | 25.0% |
! | TATGTCTGTCCTAATTTATT+TGG | - | chr5_4:59415596-59415615 | Msa0860610:intron | 25.0% |
! | TAGAGAAAAGAATTCACAAA+AGG | + | chr5_4:59415777-59415796 | None:intergenic | 25.0% |
!!! | GAGTTAATTTGTTTTCTTCA+AGG | - | chr5_4:59415820-59415839 | Msa0860610:CDS | 25.0% |
! | AAAACAAATGTCGAAAGTTT+AGG | - | chr5_4:59416155-59416174 | Msa0860610:CDS | 25.0% |
! | ACTCAAGTCTCTAATTAAAT+AGG | + | chr5_4:59416222-59416241 | None:intergenic | 25.0% |
! | TTCCTACTAAAATCAAATAG+CGG | + | chr5_4:59416503-59416522 | None:intergenic | 25.0% |
! | AGAAAGAGTTGAAAAATGTT+GGG | + | chr5_4:59416586-59416605 | None:intergenic | 25.0% |
! | CATAAAACAAAAGAAAACAG+GGG | + | chr5_4:59416705-59416724 | None:intergenic | 25.0% |
! | CCATAAAACAAAAGAAAACA+GGG | + | chr5_4:59416706-59416725 | None:intergenic | 25.0% |
! | ACCATAAAACAAAAGAAAAC+AGG | + | chr5_4:59416707-59416726 | None:intergenic | 25.0% |
!!! | TTTGGTGTTTTGATTTATGA+AGG | - | chr5_4:59416772-59416791 | Msa0860610:CDS | 25.0% |
!!! | ACCGCTATATGATTATTTTT+TGG | + | chr5_4:59416881-59416900 | None:intergenic | 25.0% |
! | AAATGTGGTATAGCTATTAT+TGG | - | chr5_4:59416976-59416995 | Msa0860610:CDS | 25.0% |
! | TCATACGATAATGAAAACAA+TGG | + | chr5_4:59417079-59417098 | None:intergenic | 25.0% |
! | ATCAAATGACAAGAGAAAAT+TGG | + | chr5_4:59417309-59417328 | None:intergenic | 25.0% |
!!! | ATTAGCTTTTAATTCTGCAA+CGG | - | chr5_4:59417373-59417392 | Msa0860610:intron | 25.0% |
!!! | GTTACTTTTAATAGAAGCAA+AGG | + | chr5_4:59417833-59417852 | None:intergenic | 25.0% |
! | AGAACTTAAAAGAAAGATTG+GGG | - | chr5_4:59417887-59417906 | Msa0860610:intron | 25.0% |
! | TAATCAAGGAAATGAAATTG+AGG | + | chr5_4:59418114-59418133 | None:intergenic | 25.0% |
!!! | TTGGCAGATTTTAATAATCA+AGG | + | chr5_4:59418128-59418147 | None:intergenic | 25.0% |
ACAATTACACAGAGAGAAAA+TGG | - | chr5_4:59413027-59413046 | Msa0860610:three_prime_UTR | 30.0% | |
GAAAGAACAAAAAGAACGAA+AGG | - | chr5_4:59413084-59413103 | Msa0860610:three_prime_UTR | 30.0% | |
AAATGTTCGTAATTAGTTGG+TGG | - | chr5_4:59413329-59413348 | Msa0860610:three_prime_UTR | 30.0% | |
TCTGAAAAAATGAGTCTTCT+CGG | - | chr5_4:59413564-59413583 | Msa0860610:CDS | 30.0% | |
CAAACACCTTGCTAATAAAA+TGG | + | chr5_4:59413667-59413686 | None:intergenic | 30.0% | |
! | TTTATTAGCAAGGTGTTTGT+AGG | - | chr5_4:59413668-59413687 | Msa0860610:intron | 30.0% |
ATACAAATGCATAGTCTGTT+AGG | - | chr5_4:59413708-59413727 | Msa0860610:intron | 30.0% | |
! | GTGCCTAGTTGTAATTTTAT+TGG | - | chr5_4:59413793-59413812 | Msa0860610:intron | 30.0% |
TATAAGAAACCATTCAAGGA+TGG | + | chr5_4:59413919-59413938 | None:intergenic | 30.0% | |
AGTTTATCTTAATCAGCAGT+GGG | + | chr5_4:59414028-59414047 | None:intergenic | 30.0% | |
AAGTTTATCTTAATCAGCAG+TGG | + | chr5_4:59414029-59414048 | None:intergenic | 30.0% | |
ATGCAAGAAAACCTAATTGT+TGG | - | chr5_4:59414195-59414214 | Msa0860610:intron | 30.0% | |
TGCAAGAAAACCTAATTGTT+GGG | - | chr5_4:59414196-59414215 | Msa0860610:intron | 30.0% | |
AATTCTGTAAAACAAGAAGG+AGG | + | chr5_4:59414291-59414310 | None:intergenic | 30.0% | |
GACAATTCTGTAAAACAAGA+AGG | + | chr5_4:59414294-59414313 | None:intergenic | 30.0% | |
TTTACAGAATTGTCTGATCA+TGG | - | chr5_4:59414300-59414319 | Msa0860610:intron | 30.0% | |
! | AACGATAACTGAAAGTACAT+CGG | + | chr5_4:59414342-59414361 | None:intergenic | 30.0% |
AGATACTGACAAAGAGAAAA+CGG | - | chr5_4:59414392-59414411 | Msa0860610:intron | 30.0% | |
!! | GAATTCTAAAACTCCTGAAT+GGG | + | chr5_4:59414424-59414443 | None:intergenic | 30.0% |
!! | TGAATTCTAAAACTCCTGAA+TGG | + | chr5_4:59414425-59414444 | None:intergenic | 30.0% |
AATTATTCCATACATGAGGA+GGG | + | chr5_4:59414473-59414492 | None:intergenic | 30.0% | |
AAATTATTCCATACATGAGG+AGG | + | chr5_4:59414474-59414493 | None:intergenic | 30.0% | |
!! | GTTTTCTGAAGGTTGTATTA+TGG | - | chr5_4:59414494-59414513 | Msa0860610:intron | 30.0% |
TTCTGATTTACCAAACCATA+AGG | - | chr5_4:59414596-59414615 | Msa0860610:intron | 30.0% | |
! | GACATTTTCACTGTAAACTA+TGG | - | chr5_4:59414666-59414685 | Msa0860610:intron | 30.0% |
AAAACCTTCATCAAGTGTAT+CGG | - | chr5_4:59414722-59414741 | Msa0860610:intron | 30.0% | |
!!! | GTTTTAATTCCAGCAGTATT+TGG | - | chr5_4:59414813-59414832 | Msa0860610:intron | 30.0% |
TTAGAATCAGAGACAAATGA+AGG | - | chr5_4:59414948-59414967 | Msa0860610:intron | 30.0% | |
!! | AGCTCTAAGGATAAAAACTT+AGG | - | chr5_4:59415071-59415090 | Msa0860610:intron | 30.0% |
TAAGGATAAAAACTTAGGTG+CGG | - | chr5_4:59415076-59415095 | Msa0860610:intron | 30.0% | |
!! | ACTTATAGCATTGGTGTAAA+CGG | - | chr5_4:59415101-59415120 | Msa0860610:intron | 30.0% |
! | ATTGGTGTAAACGGATTTAA+AGG | - | chr5_4:59415110-59415129 | Msa0860610:intron | 30.0% |
!! | TAAGACTGTTAGTTTGTACT+TGG | + | chr5_4:59415141-59415160 | None:intergenic | 30.0% |
AGTACTTGAGAAAGAGAAAA+TGG | - | chr5_4:59415466-59415485 | Msa0860610:intron | 30.0% | |
AAAACCATACTAGACAAGAA+TGG | + | chr5_4:59415510-59415529 | None:intergenic | 30.0% | |
TCCTAATTTATTTGGCTACT+GGG | - | chr5_4:59415604-59415623 | Msa0860610:intron | 30.0% | |
TACTGGGATATGTTAGAATT+TGG | - | chr5_4:59415620-59415639 | Msa0860610:intron | 30.0% | |
ACTGGGATATGTTAGAATTT+GGG | - | chr5_4:59415621-59415640 | Msa0860610:intron | 30.0% | |
CTCTATGTAAGCAATCTTAA+TGG | - | chr5_4:59415792-59415811 | Msa0860610:CDS | 30.0% | |
AACTATGATGACTGTTTATC+AGG | + | chr5_4:59415858-59415877 | None:intergenic | 30.0% | |
TGATAAACAGTCATCATAGT+TGG | - | chr5_4:59415857-59415876 | Msa0860610:CDS | 30.0% | |
! | TTTAAGAATAGTGGAAGACT+TGG | + | chr5_4:59415918-59415937 | None:intergenic | 30.0% |
AACTGCATGTTTAAGAATAG+TGG | + | chr5_4:59415927-59415946 | None:intergenic | 30.0% | |
! | TCAATTTTCTCTCCAAATCA+CGG | - | chr5_4:59416100-59416119 | Msa0860610:CDS | 30.0% |
!! | AAACCTTTTTGATGGCATTT+TGG | - | chr5_4:59416547-59416566 | Msa0860610:CDS | 30.0% |
!! | AACCTTTTTGATGGCATTTT+GGG | - | chr5_4:59416548-59416567 | Msa0860610:CDS | 30.0% |
GAAAGAGTTGAAAAATGTTG+GGG | + | chr5_4:59416585-59416604 | None:intergenic | 30.0% | |
GAGAAAGAGTTGAAAAATGT+TGG | + | chr5_4:59416587-59416606 | None:intergenic | 30.0% | |
AAACTCTTCTATCTTCCAAT+TGG | - | chr5_4:59416630-59416649 | Msa0860610:CDS | 30.0% | |
!!! | CCCTGTTTTCTTTTGTTTTA+TGG | - | chr5_4:59416703-59416722 | Msa0860610:CDS | 30.0% |
!!! | TGTTCCTCTGTTTTGTTTTT+TGG | - | chr5_4:59416754-59416773 | Msa0860610:CDS | 30.0% |
AACACCAAAAAACAAAACAG+AGG | + | chr5_4:59416761-59416780 | None:intergenic | 30.0% | |
AGTCAGTATAGTTATTGATG+AGG | - | chr5_4:59417008-59417027 | Msa0860610:intron | 30.0% | |
CAAAATTGAACCCAATTGAT+AGG | - | chr5_4:59417130-59417149 | Msa0860610:intron | 30.0% | |
GTCCAAAATAGATATACACT+GGG | + | chr5_4:59417160-59417179 | None:intergenic | 30.0% | |
TGTCCAAAATAGATATACAC+TGG | + | chr5_4:59417161-59417180 | None:intergenic | 30.0% | |
TGCTTATCAAATTGAGATTC+AGG | + | chr5_4:59417497-59417516 | None:intergenic | 30.0% | |
GAAATCCGTCTATAAGAAAA+AGG | - | chr5_4:59417532-59417551 | Msa0860610:intron | 30.0% | |
TTTGTATGTATTGTCTACCA+TGG | - | chr5_4:59417920-59417939 | Msa0860610:intron | 30.0% | |
TTGTATGTATTGTCTACCAT+GGG | - | chr5_4:59417921-59417940 | Msa0860610:intron | 30.0% | |
!! | GTTGTGCAAATATTTTAAGC+AGG | - | chr5_4:59418064-59418083 | Msa0860610:CDS | 30.0% |
!! | AATATTTTAAGCAGGTTACC+TGG | - | chr5_4:59418072-59418091 | Msa0860610:CDS | 30.0% |
! | TGTTGTTGTTAAGTTCGTGT+TGG | + | chr5_4:59413008-59413027 | None:intergenic | 35.0% |
AGCAAGATTGAAACTCCAAA+AGG | - | chr5_4:59413111-59413130 | Msa0860610:three_prime_UTR | 35.0% | |
! | CTTTCGCTTTCTTTTCCTTT+TGG | + | chr5_4:59413129-59413148 | None:intergenic | 35.0% |
!!! | GTGAAAAGAGGGTTTTGATT+AGG | + | chr5_4:59413236-59413255 | None:intergenic | 35.0% |
AAAGCGAAAGAGTGAAAAGA+GGG | + | chr5_4:59413247-59413266 | None:intergenic | 35.0% | |
AAAAGCGAAAGAGTGAAAAG+AGG | + | chr5_4:59413248-59413267 | None:intergenic | 35.0% | |
! | CTTCTCTTATGTTTAGGACA+TGG | + | chr5_4:59413466-59413485 | None:intergenic | 35.0% |
TTGACAATCATGCCAAGTAT+GGG | + | chr5_4:59413633-59413652 | None:intergenic | 35.0% | |
TTTGACAATCATGCCAAGTA+TGG | + | chr5_4:59413634-59413653 | None:intergenic | 35.0% | |
! | ACTTGTCAGCTTAGTCATTT+TGG | + | chr5_4:59413890-59413909 | None:intergenic | 35.0% |
AGTATAGATCCATCCTTGAA+TGG | - | chr5_4:59413907-59413926 | Msa0860610:intron | 35.0% | |
GTTAAAAACCTAGGCATGAA+AGG | + | chr5_4:59414115-59414134 | None:intergenic | 35.0% | |
! | TTAGGTTTTCTTGCATCTGT+TGG | + | chr5_4:59414191-59414210 | None:intergenic | 35.0% |
AAGAAAACCTAATTGTTGGG+AGG | - | chr5_4:59414199-59414218 | Msa0860610:intron | 35.0% | |
AGAAAACCTAATTGTTGGGA+GGG | - | chr5_4:59414200-59414219 | Msa0860610:intron | 35.0% | |
TTATCTCCACTACCTTGATA+AGG | + | chr5_4:59414258-59414277 | None:intergenic | 35.0% | |
GATACTGACAAAGAGAAAAC+GGG | - | chr5_4:59414393-59414412 | Msa0860610:intron | 35.0% | |
TTAGAATTCACTGCTGATGA+AGG | - | chr5_4:59414435-59414454 | Msa0860610:intron | 35.0% | |
! | AGTTTTGCATAAGTCCCTTT+TGG | + | chr5_4:59414555-59414574 | None:intergenic | 35.0% |
!! | GTCTGTTCTGAGAAATCAAT+AGG | + | chr5_4:59414783-59414802 | None:intergenic | 35.0% |
TAGTGGGAGTTCTATTATTG+AGG | - | chr5_4:59414920-59414939 | Msa0860610:intron | 35.0% | |
AAGGATAAAAACTTAGGTGC+GGG | - | chr5_4:59415077-59415096 | Msa0860610:intron | 35.0% | |
GTAAGCATTACATACCTTCT+AGG | - | chr5_4:59415249-59415268 | Msa0860610:intron | 35.0% | |
TGGAGTTGTTCTTAGAATTG+AGG | - | chr5_4:59415334-59415353 | Msa0860610:intron | 35.0% | |
TCCAAAAATCACATTCACTG+TGG | - | chr5_4:59415359-59415378 | Msa0860610:intron | 35.0% | |
TCTCAAGTACTATTCCACAA+GGG | + | chr5_4:59415457-59415476 | None:intergenic | 35.0% | |
TTCTCAAGTACTATTCCACA+AGG | + | chr5_4:59415458-59415477 | None:intergenic | 35.0% | |
GTCCTAATTTATTTGGCTAC+TGG | - | chr5_4:59415603-59415622 | Msa0860610:intron | 35.0% | |
TCCCAGTAGCCAAATAAATT+AGG | + | chr5_4:59415608-59415627 | None:intergenic | 35.0% | |
CTGGGATATGTTAGAATTTG+GGG | - | chr5_4:59415622-59415641 | Msa0860610:intron | 35.0% | |
! | TTTCTTCAAGGTTAGCTAAG+AGG | - | chr5_4:59415832-59415851 | Msa0860610:CDS | 35.0% |
!! | ATAGTTGGTAGTCTACTGAT+GGG | - | chr5_4:59415872-59415891 | Msa0860610:CDS | 35.0% |
GGAGAGAAAATTGAGAAAAG+AGG | + | chr5_4:59416094-59416113 | None:intergenic | 35.0% | |
! | CAATTTTCTCTCCAAATCAC+GGG | - | chr5_4:59416101-59416120 | Msa0860610:CDS | 35.0% |
! | AATTTTCTCTCCAAATCACG+GGG | - | chr5_4:59416102-59416121 | Msa0860610:CDS | 35.0% |
GTTTAGGTATCTGAACCTTA+TGG | - | chr5_4:59416171-59416190 | Msa0860610:CDS | 35.0% | |
!! | TTAAATAGGTTTTGACCAGC+AGG | + | chr5_4:59416208-59416227 | None:intergenic | 35.0% |
!! | AGCCGCTATTTGATTTTAGT+AGG | - | chr5_4:59416498-59416517 | Msa0860610:CDS | 35.0% |
!! | ACCTTTTTGATGGCATTTTG+GGG | - | chr5_4:59416549-59416568 | Msa0860610:CDS | 35.0% |
! | AGATAGAAGAGTTTGTTTCG+CGG | + | chr5_4:59416624-59416643 | None:intergenic | 35.0% |
ACAGGGGAAGAAAAAAACAA+TGG | + | chr5_4:59416689-59416708 | None:intergenic | 35.0% | |
TGATGAGGAAAAACTCATTC+TGG | - | chr5_4:59417023-59417042 | Msa0860610:intron | 35.0% | |
! | CACCCAGTGTATATCTATTT+TGG | - | chr5_4:59417155-59417174 | Msa0860610:intron | 35.0% |
TCACTACCTAAACTAAGTGT+TGG | - | chr5_4:59417248-59417267 | Msa0860610:intron | 35.0% | |
! | TTGTTGTGAAGCATTACATC+TGG | - | chr5_4:59417854-59417873 | Msa0860610:intron | 35.0% |
! | TGTTGTGAAGCATTACATCT+GGG | - | chr5_4:59417855-59417874 | Msa0860610:intron | 35.0% |
GGAATAGAATTTACTTCACC+AGG | + | chr5_4:59418093-59418112 | None:intergenic | 35.0% | |
AGATCTTTGAGCAGCTTCAA+TGG | + | chr5_4:59413176-59413195 | None:intergenic | 40.0% | |
!! | TACCTTAAGTTGAGCTTCAG+CGG | + | chr5_4:59413212-59413231 | None:intergenic | 40.0% |
GAAAAAATGAGTCTTCTCGG+TGG | - | chr5_4:59413567-59413586 | Msa0860610:CDS | 40.0% | |
!! | GCACGGACAATTCTGAAATT+AGG | - | chr5_4:59413592-59413611 | Msa0860610:intron | 40.0% |
ACTTGTCTATTCCCCATACT+TGG | - | chr5_4:59413618-59413637 | Msa0860610:intron | 40.0% | |
TGACAATCATGCCAAGTATG+GGG | + | chr5_4:59413632-59413651 | None:intergenic | 40.0% | |
GTATATGATGCATCCCTTCA+AGG | - | chr5_4:59413730-59413749 | Msa0860610:intron | 40.0% | |
!! | GCTTTTTCTTGAGCCTTGAA+GGG | + | chr5_4:59413746-59413765 | None:intergenic | 40.0% |
ATGTTGTGTTCAGCCACAAA+GGG | + | chr5_4:59413768-59413787 | None:intergenic | 40.0% | |
AATGTTGTGTTCAGCCACAA+AGG | + | chr5_4:59413769-59413788 | None:intergenic | 40.0% | |
!! | CAGCTTAGTCATTTTGGATG+AGG | + | chr5_4:59413884-59413903 | None:intergenic | 40.0% |
GATTGCATTCATAGACTGAG+AGG | + | chr5_4:59414088-59414107 | None:intergenic | 40.0% | |
AATCACTTCCTTTCATGCCT+AGG | - | chr5_4:59414104-59414123 | Msa0860610:intron | 40.0% | |
GAAAACCTAATTGTTGGGAG+GGG | - | chr5_4:59414201-59414220 | Msa0860610:intron | 40.0% | |
!! | TCAGTTATCGTTGACTCACA+AGG | - | chr5_4:59414350-59414369 | Msa0860610:intron | 40.0% |
!! | TTATCGTTGACTCACAAGGA+GGG | - | chr5_4:59414354-59414373 | Msa0860610:intron | 40.0% |
!! | ACATAGCGGACTTCAATCAA+TGG | + | chr5_4:59414525-59414544 | None:intergenic | 40.0% |
TGATTGAAGTCCGCTATGTT+TGG | - | chr5_4:59414526-59414545 | Msa0860610:intron | 40.0% | |
!! | CTTTTGGAAGCCAAACATAG+CGG | + | chr5_4:59414539-59414558 | None:intergenic | 40.0% |
! | GCTATGTTTGGCTTCCAAAA+GGG | - | chr5_4:59414538-59414557 | Msa0860610:intron | 40.0% |
GCAAAACTTCAACCTGAAAG+AGG | - | chr5_4:59414567-59414586 | Msa0860610:intron | 40.0% | |
AAACTTCAACCTGAAAGAGG+AGG | - | chr5_4:59414570-59414589 | Msa0860610:intron | 40.0% | |
TCAGAAAATCCTCCTCTTTC+AGG | + | chr5_4:59414582-59414601 | None:intergenic | 40.0% | |
TTGTTTCGAGGATTGCCTTA+TGG | + | chr5_4:59414614-59414633 | None:intergenic | 40.0% | |
CAATCCTCGAAACAAGTCTT+CGG | - | chr5_4:59414619-59414638 | Msa0860610:intron | 40.0% | |
AACACCGATACACTTGATGA+AGG | + | chr5_4:59414729-59414748 | None:intergenic | 40.0% | |
! | TTCATCAAGTGTATCGGTGT+TGG | - | chr5_4:59414728-59414747 | Msa0860610:intron | 40.0% |
CTTTCCTTCATCTACTGTAC+CGG | + | chr5_4:59414850-59414869 | None:intergenic | 40.0% | |
TTTCAATTGACAATGGCACC+TGG | - | chr5_4:59414886-59414905 | Msa0860610:intron | 40.0% | |
TTCAATTGACAATGGCACCT+GGG | - | chr5_4:59414887-59414906 | Msa0860610:intron | 40.0% | |
GTCGTGTAGGAAATATGAGA+GGG | + | chr5_4:59415001-59415020 | None:intergenic | 40.0% | |
TGTCGTGTAGGAAATATGAG+AGG | + | chr5_4:59415002-59415021 | None:intergenic | 40.0% | |
GAGTGGTCTTCTCATGATAT+TGG | - | chr5_4:59415029-59415048 | Msa0860610:intron | 40.0% | |
GACTTTGATTCTCAGCTCTA+AGG | - | chr5_4:59415058-59415077 | Msa0860610:intron | 40.0% | |
AGGATAAAAACTTAGGTGCG+GGG | - | chr5_4:59415078-59415097 | Msa0860610:intron | 40.0% | |
ATCATCTTCCGTGTCATCAA+TGG | - | chr5_4:59415199-59415218 | Msa0860610:intron | 40.0% | |
TCATCTTCCGTGTCATCAAT+GGG | - | chr5_4:59415200-59415219 | Msa0860610:intron | 40.0% | |
GGTTGGATACTGAACAATGT+AGG | - | chr5_4:59415222-59415241 | Msa0860610:intron | 40.0% | |
TGTAGTGCAATAGTCCTAGA+AGG | + | chr5_4:59415266-59415285 | None:intergenic | 40.0% | |
TACATGAAGCTTACTGTAGC+AGG | - | chr5_4:59415282-59415301 | Msa0860610:intron | 40.0% | |
! | GCCACAGTGAATGTGATTTT+TGG | + | chr5_4:59415363-59415382 | None:intergenic | 40.0% |
AAAATCACATTCACTGTGGC+AGG | - | chr5_4:59415363-59415382 | Msa0860610:intron | 40.0% | |
CACACCATTCTTGTCTAGTA+TGG | - | chr5_4:59415503-59415522 | Msa0860610:intron | 40.0% | |
GTAAGCAATCTTAATGGTGC+TGG | - | chr5_4:59415798-59415817 | Msa0860610:CDS | 40.0% | |
!! | CATAGTTGGTAGTCTACTGA+TGG | - | chr5_4:59415871-59415890 | Msa0860610:CDS | 40.0% |
CCAACTCATACCAACTATGA+CGG | - | chr5_4:59415989-59416008 | Msa0860610:CDS | 40.0% | |
GTTTAAGAAGCCGTCATAGT+TGG | + | chr5_4:59416002-59416021 | None:intergenic | 40.0% | |
TTGTGAGCTGAACTGACATT+TGG | - | chr5_4:59416032-59416051 | Msa0860610:CDS | 40.0% | |
ATATCTGTGTGTGTGAATGC+AGG | + | chr5_4:59416071-59416090 | None:intergenic | 40.0% | |
! | TAACTTGTATCCCCGTGATT+TGG | + | chr5_4:59416115-59416134 | None:intergenic | 40.0% |
AGCGATGTGGAATCAAATAG+TGG | - | chr5_4:59416468-59416487 | Msa0860610:CDS | 40.0% | |
AAATCAAATAGCGGCTGAAG+CGG | + | chr5_4:59416494-59416513 | None:intergenic | 40.0% | |
!! | CCTTTTTGATGGCATTTTGG+GGG | - | chr5_4:59416550-59416569 | Msa0860610:CDS | 40.0% |
GAAAGAGAGAAAAGATCTCC+AGG | + | chr5_4:59416665-59416684 | None:intergenic | 40.0% | |
GACTACTATGCTGACAAATG+TGG | - | chr5_4:59416961-59416980 | Msa0860610:CDS | 40.0% | |
ACTGGGTGTTCCTATCAATT+GGG | + | chr5_4:59417143-59417162 | None:intergenic | 40.0% | |
!! | CTACCTAAACTAAGTGTTGG+TGG | - | chr5_4:59417251-59417270 | Msa0860610:intron | 40.0% |
ACAATCCTCTTAACCTGTCA+CGG | + | chr5_4:59417680-59417699 | None:intergenic | 40.0% | |
TTCAGTGATGTTGAAGGAGA+TGG | - | chr5_4:59417755-59417774 | Msa0860610:intron | 40.0% | |
! | CAGATTGCTGTTCATCAGAA+AGG | - | chr5_4:59417786-59417805 | Msa0860610:intron | 40.0% |
CAGAAAGGCTAATTCTGATG+CGG | - | chr5_4:59417801-59417820 | Msa0860610:intron | 40.0% | |
ACATATCTTAAAGGAACCCC+AGG | - | chr5_4:59418030-59418049 | Msa0860610:CDS | 40.0% | |
ATCTGCCAAGTTGTCAAACA+TGG | - | chr5_4:59418139-59418158 | Msa0860610:exon | 40.0% | |
TGTGACCATGTTTGACAACT+TGG | + | chr5_4:59418147-59418166 | None:intergenic | 40.0% | |
ATGCAGCTTACTAGAACTCT+GGG | + | chr5_4:59418176-59418195 | None:intergenic | 40.0% | |
AATGCAGCTTACTAGAACTC+TGG | + | chr5_4:59418177-59418196 | None:intergenic | 40.0% | |
TCTAGTAAGCTGCATTGTGA+TGG | - | chr5_4:59418181-59418200 | Msa0860610:five_prime_UTR | 40.0% | |
CGTACGCGAATCATCATCAT+TGG | - | chr5_4:59413271-59413290 | Msa0860610:three_prime_UTR | 45.0% | |
!! | GGCTTTTTCTTGAGCCTTGA+AGG | + | chr5_4:59413747-59413766 | None:intergenic | 45.0% |
GCTCAAGAAAAAGCCCTTTG+TGG | - | chr5_4:59413752-59413771 | Msa0860610:intron | 45.0% | |
CAATTCCCCTCCCAACAATT+AGG | + | chr5_4:59414209-59414228 | None:intergenic | 45.0% | |
CTGGAAGCTGTACCTTATCA+AGG | - | chr5_4:59414243-59414262 | Msa0860610:intron | 45.0% | |
GCTGTACCTTATCAAGGTAG+TGG | - | chr5_4:59414249-59414268 | Msa0860610:intron | 45.0% | |
TGATCATGGTGCGCTTGATA+AGG | - | chr5_4:59414314-59414333 | Msa0860610:intron | 45.0% | |
GATCATGGTGCGCTTGATAA+GGG | - | chr5_4:59414315-59414334 | Msa0860610:intron | 45.0% | |
!! | GTTATCGTTGACTCACAAGG+AGG | - | chr5_4:59414353-59414372 | Msa0860610:intron | 45.0% |
AAAACGGGAACAACCCATTC+AGG | - | chr5_4:59414408-59414427 | Msa0860610:intron | 45.0% | |
ACTGCTGATGAAGGTTCAGT+GGG | - | chr5_4:59414444-59414463 | Msa0860610:intron | 45.0% | |
! | CGCTATGTTTGGCTTCCAAA+AGG | - | chr5_4:59414537-59414556 | Msa0860610:intron | 45.0% |
TCGAGGATTGCCTTATGGTT+TGG | + | chr5_4:59414609-59414628 | None:intergenic | 45.0% | |
CAGCATGCTACACTTTCTCA+AGG | - | chr5_4:59414642-59414661 | Msa0860610:intron | 45.0% | |
TGTGGAGTTCCAAATACTGC+TGG | + | chr5_4:59414825-59414844 | None:intergenic | 45.0% | |
! | GTATTTGGAACTCCACAGAC+CGG | - | chr5_4:59414828-59414847 | Msa0860610:intron | 45.0% |
! | ACCTGGGAGAGAATTTCTAG+TGG | - | chr5_4:59414903-59414922 | Msa0860610:intron | 45.0% |
!! | CCTGGGAGAGAATTTCTAGT+GGG | - | chr5_4:59414904-59414923 | Msa0860610:intron | 45.0% |
!! | ATGCTTGCTGACCCAGTTTT+TGG | + | chr5_4:59415181-59415200 | None:intergenic | 45.0% |
CATCTTCCGTGTCATCAATG+GGG | - | chr5_4:59415201-59415220 | Msa0860610:intron | 45.0% | |
! | ATCCAACCCCATTGATGACA+CGG | + | chr5_4:59415210-59415229 | None:intergenic | 45.0% |
AACGTTACCTGTCAGCATGA+AGG | - | chr5_4:59415308-59415327 | Msa0860610:intron | 45.0% | |
AGACAAGAATGGTGTGAGAG+AGG | + | chr5_4:59415499-59415518 | None:intergenic | 45.0% | |
GTTAGAATTTGGGGATCCAG+CGG | - | chr5_4:59415631-59415650 | Msa0860610:intron | 45.0% | |
! | ACGATATAAGCTTTTGCCGC+TGG | + | chr5_4:59415650-59415669 | None:intergenic | 45.0% |
! | CCGTCATAGTTGGTATGAGT+TGG | + | chr5_4:59415992-59416011 | None:intergenic | 45.0% |
CAGGAACTGCAATCTCCATA+AGG | + | chr5_4:59416189-59416208 | None:intergenic | 45.0% | |
! | TTCTAACCTAAGGAGTGCAG+CGG | - | chr5_4:59416338-59416357 | Msa0860610:CDS | 45.0% |
AAATCTTAGCGGCGCTATAG+CGG | - | chr5_4:59416401-59416420 | Msa0860610:CDS | 45.0% | |
CGCTACGATTATTACCGTAG+CGG | + | chr5_4:59416452-59416471 | None:intergenic | 45.0% | |
CGGTAATAATCGTAGCGATG+TGG | - | chr5_4:59416455-59416474 | Msa0860610:CDS | 45.0% | |
CCCCCAAAATGCCATCAAAA+AGG | + | chr5_4:59416553-59416572 | None:intergenic | 45.0% | |
TCCAATTGGAAAACGCTACC+TGG | - | chr5_4:59416644-59416663 | Msa0860610:CDS | 45.0% | |
! | TCCAGGTAGCGTTTTCCAAT+TGG | + | chr5_4:59416648-59416667 | None:intergenic | 45.0% |
TAGTAGTCAATCCCGGATAG+CGG | + | chr5_4:59416949-59416968 | None:intergenic | 45.0% | |
GTCAGCATAGTAGTCAATCC+CGG | + | chr5_4:59416956-59416975 | None:intergenic | 45.0% | |
CACTGGGTGTTCCTATCAAT+TGG | + | chr5_4:59417144-59417163 | None:intergenic | 45.0% | |
TGGCCACCAACACTTAGTTT+AGG | + | chr5_4:59417257-59417276 | None:intergenic | 45.0% | |
!!! | CTAATTTCGTGCCGCTTTTG+TGG | - | chr5_4:59417618-59417637 | Msa0860610:intron | 45.0% |
GAACCATATCGCCACAAAAG+CGG | + | chr5_4:59417632-59417651 | None:intergenic | 45.0% | |
CAATCCTCTTAACCTGTCAC+GGG | + | chr5_4:59417679-59417698 | None:intergenic | 45.0% | |
GAACGTCCACAAGAATCACA+GGG | + | chr5_4:59417738-59417757 | None:intergenic | 45.0% | |
TGAACGTCCACAAGAATCAC+AGG | + | chr5_4:59417739-59417758 | None:intergenic | 45.0% | |
TGGACGTTCAGTGATGTTGA+AGG | - | chr5_4:59417749-59417768 | Msa0860610:intron | 45.0% | |
CAATGTCATACAGCCACAGT+AGG | + | chr5_4:59417954-59417973 | None:intergenic | 45.0% | |
ACTGTGGCTGTATGACATTG+TGG | - | chr5_4:59417954-59417973 | Msa0860610:intron | 45.0% | |
! | GCATTGTGATGGTGTGCATT+TGG | - | chr5_4:59418192-59418211 | Msa0860610:five_prime_UTR | 45.0% |
!!! | TTAATTTAATAATTACTTTT+AGG | - | chr5_4:59413380-59413399 | Msa0860610:CDS | 5.0% |
!!! | TATTTATATTTTCTTATAAA+CGG | + | chr5_4:59416281-59416300 | None:intergenic | 5.0% |
TGCCGCTGAAGCTCAACTTA+AGG | - | chr5_4:59413207-59413226 | Msa0860610:three_prime_UTR | 50.0% | |
CACTGCTGATGAAGGTTCAG+TGG | - | chr5_4:59414443-59414462 | Msa0860610:intron | 50.0% | |
! | TCATCTACTGTACCGGTCTG+TGG | + | chr5_4:59414843-59414862 | None:intergenic | 50.0% |
CAGACCGGTACAGTAGATGA+AGG | - | chr5_4:59414843-59414862 | Msa0860610:intron | 50.0% | |
CCCACTAGAAATTCTCTCCC+AGG | + | chr5_4:59414907-59414926 | None:intergenic | 50.0% | |
CATGAGAAGACCACTCATGC+TGG | + | chr5_4:59415025-59415044 | None:intergenic | 50.0% | |
TTCCGTGTCATCAATGGGGT+TGG | - | chr5_4:59415205-59415224 | Msa0860610:intron | 50.0% | |
ACCTGTCAGCATGAAGGTTG+TGG | - | chr5_4:59415314-59415333 | Msa0860610:intron | 50.0% | |
TCCACAACCTTCATGCTGAC+AGG | + | chr5_4:59415318-59415337 | None:intergenic | 50.0% | |
AGCTTTCCAGCAGGCAGAAT+TGG | - | chr5_4:59415394-59415413 | Msa0860610:intron | 50.0% | |
! | GCTTTTCCAATTCTGCCTGC+TGG | + | chr5_4:59415403-59415422 | None:intergenic | 50.0% |
!! | ATTCCACAAGGGCACTGAAG+TGG | + | chr5_4:59415446-59415465 | None:intergenic | 50.0% |
ATGGAGATTGCAGTTCCTGC+TGG | - | chr5_4:59416190-59416209 | Msa0860610:CDS | 50.0% | |
ATAGCAGCAACGAACCGCTA+CGG | - | chr5_4:59416435-59416454 | Msa0860610:CDS | 50.0% | |
! | AAGAGTTTGTTTCGCGGCGT+AGG | + | chr5_4:59416618-59416637 | None:intergenic | 50.0% |
AAGCATCAGTTTGCCCCTTG+CGG | - | chr5_4:59417595-59417614 | Msa0860610:intron | 50.0% | |
!! | TCAGAGCACGAGAGTGTTTG+TGG | - | chr5_4:59417699-59417718 | Msa0860610:intron | 50.0% |
!! | CAGAGCACGAGAGTGTTTGT+GGG | - | chr5_4:59417700-59417719 | Msa0860610:intron | 50.0% |
!! | ACGAGAGTGTTTGTGGGTCA+AGG | - | chr5_4:59417706-59417725 | Msa0860610:intron | 50.0% |
ACTGCACCCTGTGATTCTTG+TGG | - | chr5_4:59417729-59417748 | Msa0860610:intron | 50.0% | |
ACAACAAACGCACTTGCCTG+GGG | + | chr5_4:59418049-59418068 | None:intergenic | 50.0% | |
CACAACAAACGCACTTGCCT+GGG | + | chr5_4:59418050-59418069 | None:intergenic | 50.0% | |
GAGTCTTCTCGGTGGAAGCA+CGG | - | chr5_4:59413575-59413594 | Msa0860610:CDS | 55.0% | |
TGGGTCTCCCTCCTCATGTA+TGG | - | chr5_4:59414463-59414482 | Msa0860610:intron | 55.0% | |
! | GCTGCCGAAGACTTGTTTCG+AGG | + | chr5_4:59414626-59414645 | None:intergenic | 55.0% |
!! | CACTCATGCTGGTGTCGTGT+AGG | + | chr5_4:59415014-59415033 | None:intergenic | 55.0% |
CTACACGACACCAGCATGAG+TGG | - | chr5_4:59415012-59415031 | Msa0860610:intron | 55.0% | |
GGTGCGGGGACTTATAGCAT+TGG | - | chr5_4:59415092-59415111 | Msa0860610:intron | 55.0% | |
CACATTCACTGTGGCAGGTG+TGG | - | chr5_4:59415368-59415387 | Msa0860610:intron | 55.0% | |
GTGTGGTCAAGCTTTCCAGC+AGG | - | chr5_4:59415385-59415404 | Msa0860610:intron | 55.0% | |
TTAGGTCCGCTGCACTCCTT+AGG | + | chr5_4:59416347-59416366 | None:intergenic | 55.0% | |
GGCACGAAATTAGCCGCAAG+GGG | + | chr5_4:59417611-59417630 | None:intergenic | 55.0% | |
CGGCACGAAATTAGCCGCAA+GGG | + | chr5_4:59417612-59417631 | None:intergenic | 55.0% | |
!!! | GTGCCGCTTTTGTGGCGATA+TGG | - | chr5_4:59417626-59417645 | Msa0860610:intron | 55.0% |
TGTGGCGATATGGTTCCAGC+TGG | - | chr5_4:59417636-59417655 | Msa0860610:intron | 55.0% | |
TCCAGCTGGAAGCTCTGCAA+TGG | - | chr5_4:59417650-59417669 | Msa0860610:intron | 55.0% | |
TCCATTGCAGAGCTTCCAGC+TGG | + | chr5_4:59417654-59417673 | None:intergenic | 55.0% | |
GATGCCCGTGACAGGTTAAG+AGG | - | chr5_4:59417672-59417691 | Msa0860610:intron | 55.0% | |
CACAGTAGGCTGCTAACCCA+TGG | + | chr5_4:59417940-59417959 | None:intergenic | 55.0% | |
!! | CATGGGTTAGCAGCCTACTG+TGG | - | chr5_4:59417938-59417957 | Msa0860610:intron | 55.0% |
GCACAACAAACGCACTTGCC+TGG | + | chr5_4:59418051-59418070 | None:intergenic | 55.0% | |
GAGCCACTTCAGTGCCCTTG+TGG | - | chr5_4:59415440-59415459 | Msa0860610:intron | 60.0% | |
GCGGCACGAAATTAGCCGCA+AGG | + | chr5_4:59417613-59417632 | None:intergenic | 60.0% | |
CTGCAATGGATGCCCGTGAC+AGG | - | chr5_4:59417664-59417683 | Msa0860610:intron | 60.0% | |
! | TCCCGGATAGCGGTGCGTAG+CGG | + | chr5_4:59416939-59416958 | None:intergenic | 65.0% |
GGCCGCTACGCACCGCTATC+CGG | - | chr5_4:59416934-59416953 | Msa0860610:CDS | 70.0% | |
GCCGCTACGCACCGCTATCC+GGG | - | chr5_4:59416935-59416954 | Msa0860610:CDS | 70.0% | |
GGCGCTATAGCGGCTGCGCG+TGG | - | chr5_4:59416411-59416430 | Msa0860610:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 59412924 | 59418264 | 59412924 | ID=Msa0860610;Name=Msa0860610 |
chr5_4 | mRNA | 59412924 | 59418264 | 59412924 | ID=Msa0860610-mRNA-1;Parent=Msa0860610;Name=Msa0860610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=122|1|1|1|1|1|3|452|571 |
chr5_4 | exon | 59412924 | 59413603 | 59412924 | ID=Msa0860610-mRNA-1:exon:18241;Parent=Msa0860610-mRNA-1 |
chr5_4 | exon | 59415701 | 59417005 | 59415701 | ID=Msa0860610-mRNA-1:exon:18240;Parent=Msa0860610-mRNA-1 |
chr5_4 | exon | 59417960 | 59418264 | 59417960 | ID=Msa0860610-mRNA-1:exon:18239;Parent=Msa0860610-mRNA-1 |
chr5_4 | five_prime_UTR | 59418143 | 59418264 | 59418143 | ID=Msa0860610-mRNA-1:five_prime_utr;Parent=Msa0860610-mRNA-1 |
chr5_4 | CDS | 59417960 | 59418142 | 59417960 | ID=Msa0860610-mRNA-1:cds;Parent=Msa0860610-mRNA-1 |
chr5_4 | CDS | 59415701 | 59417005 | 59415701 | ID=Msa0860610-mRNA-1:cds;Parent=Msa0860610-mRNA-1 |
chr5_4 | CDS | 59413376 | 59413603 | 59413376 | ID=Msa0860610-mRNA-1:cds;Parent=Msa0860610-mRNA-1 |
chr5_4 | three_prime_UTR | 59412924 | 59413375 | 59412924 | ID=Msa0860610-mRNA-1:three_prime_utr;Parent=Msa0860610-mRNA-1 |
Gene Sequence |
Protein sequence |