AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0860610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860610 MtrunA17_Chr5g0439731 98.424 571 9 0 1 571 1 571 0.0 1171
Msa0860610 MtrunA17_Chr8g0391701 38.122 181 85 4 90 266 32 189 8.26e-29 117
Msa0860610 MtrunA17_Chr4g0031801 42.520 127 69 1 140 266 13 135 1.50e-25 105
Msa0860610 MtrunA17_Chr4g0031781 41.732 127 70 1 140 266 13 135 6.13e-25 104
Msa0860610 MtrunA17_Chr4g0031811 40.157 127 72 1 140 266 13 135 5.20e-23 98.6
Msa0860610 MtrunA17_Chr3g0141211 28.846 156 79 4 411 565 9 133 2.42e-12 66.2
Msa0860610 MtrunA17_Chr5g0427911 28.387 155 79 5 411 564 9 132 1.28e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860610 AT4G15420.2 65.499 571 184 4 1 570 124 682 0.0 803
Msa0860610 AT4G15420.1 65.499 571 184 4 1 570 1 559 0.0 800
Msa0860610 AT2G29070.2 42.246 187 87 4 91 276 28 194 2.77e-33 129
Msa0860610 AT2G29070.1 41.209 182 86 4 96 276 1 162 4.02e-31 122
Msa0860610 AT2G21270.5 40.449 178 85 6 90 266 32 189 1.78e-30 122
Msa0860610 AT2G21270.2 40.449 178 85 6 90 266 32 189 1.78e-30 122
Msa0860610 AT2G21270.4 40.449 178 85 6 90 266 32 189 1.78e-30 122
Msa0860610 AT2G21270.1 40.449 178 85 6 90 266 32 189 1.78e-30 122
Msa0860610 AT4G38930.2 39.037 187 95 4 90 276 32 199 2.48e-30 121
Msa0860610 AT4G38930.3 39.037 187 95 4 90 276 32 199 2.48e-30 121
Msa0860610 AT4G38930.4 39.037 187 95 4 90 276 32 199 2.49e-30 121
Msa0860610 AT4G38930.1 39.037 187 95 4 90 276 32 199 2.49e-30 121
Msa0860610 AT2G21270.3 40.113 177 87 5 90 266 53 210 3.01e-30 122
Msa0860610 AT1G09920.1 29.193 161 82 3 405 564 3 132 6.08e-13 68.2
Msa0860610 AT2G29070.3 42.647 68 39 0 209 276 11 78 7.36e-12 65.1

Find 148 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAAATCCTCCTCTTTC+AGG 0.143052 5_4:+59416587 None:intergenic
ATGTTTCTTACATATCTTAA+AGG 0.172958 5_4:-59413145 Msa0860610:three_prime_UTR
TTCTACAAAGAATCATAATT+TGG 0.177000 5_4:+59413169 None:intergenic
GAAAACTTGAACACAAATTA+AGG 0.198776 5_4:-59416478 Msa0860610:CDS
GTAAGCATTACATACCTTCT+AGG 0.232572 5_4:-59415917 Msa0860610:CDS
GAAATGAAATAAGTGATTAA+TGG 0.249009 5_4:+59418240 None:intergenic
CAATTCCCCTCCCAACAATT+AGG 0.264309 5_4:+59416960 None:intergenic
ACAATTACACAGAGAGAAAA+TGG 0.266918 5_4:-59418139 Msa0860610:exon
ATTGGTGTAAACGGATTTAA+AGG 0.282536 5_4:-59416056 Msa0860610:CDS
GACTTTGATTCTCAGCTCTA+AGG 0.312180 5_4:-59416108 Msa0860610:CDS
AGCTTTCCAGCAGGCAGAAT+TGG 0.313607 5_4:-59415772 Msa0860610:CDS
AGTACTTGAGAAAGAGAAAA+TGG 0.328339 5_4:-59415700 Msa0860610:intron
AATGCAGCTTACTAGAACTC+TGG 0.370099 5_4:+59412992 None:intergenic
CACAACAAACGCACTTGCCT+GGG 0.372580 5_4:+59413119 None:intergenic
GCACAACAAACGCACTTGCC+TGG 0.374699 5_4:+59413118 None:intergenic
TTGTTTCGAGGATTGCCTTA+TGG 0.381012 5_4:+59416555 None:intergenic
TGATTGAAGTCCGCTATGTT+TGG 0.387670 5_4:-59416640 Msa0860610:CDS
TTGTTGTGAAGCATTACATC+TGG 0.387956 5_4:-59413312 Msa0860610:three_prime_UTR
GAGTGGTCTTCTCATGATAT+TGG 0.388666 5_4:-59416137 Msa0860610:CDS
TCGAGGATTGCCTTATGGTT+TGG 0.390171 5_4:+59416560 None:intergenic
ATAGAACTTAAAAGAAAGAT+TGG 0.396183 5_4:-59413281 Msa0860610:three_prime_UTR
CGCTATGTTTGGCTTCCAAA+AGG 0.401774 5_4:-59416629 Msa0860610:CDS
ATCATCTTCCGTGTCATCAA+TGG 0.403538 5_4:-59415967 Msa0860610:CDS
TAGAACTTAAAAGAAAGATT+GGG 0.404919 5_4:-59413280 Msa0860610:three_prime_UTR
TTCTGATTTACCAAACCATA+AGG 0.405158 5_4:-59416570 Msa0860610:CDS
ACTTATAGCATTGGTGTAAA+CGG 0.424284 5_4:-59416065 Msa0860610:CDS
GCATTGTGATGGTGTGCATT+TGG 0.425118 5_4:-59412974 Msa0860610:three_prime_UTR
TCATCTTCCGTGTCATCAAT+GGG 0.426538 5_4:-59415966 Msa0860610:CDS
AAAACGGGAACAACCCATTC+AGG 0.427142 5_4:-59416758 Msa0860610:CDS
TGAATTCTAAAACTCCTGAA+TGG 0.430305 5_4:+59416744 None:intergenic
TGGGTCTCCCTCCTCATGTA+TGG 0.432563 5_4:-59416703 Msa0860610:CDS
ATGCAAGAAAACCTAATTGT+TGG 0.432810 5_4:-59416971 Msa0860610:CDS
AGATCTTTGAGCAGCTTCAA+TGG 0.438447 5_4:+59417993 None:intergenic
AGATACTGACAAAGAGAAAA+CGG 0.442108 5_4:-59416774 Msa0860610:CDS
TGGAGTTGTTCTTAGAATTG+AGG 0.446426 5_4:-59415832 Msa0860610:CDS
TGATCATGGTGCGCTTGATA+AGG 0.448669 5_4:-59416852 Msa0860610:CDS
TGCAAGAAAACCTAATTGTT+GGG 0.448899 5_4:-59416970 Msa0860610:CDS
TCAGAGCACGAGAGTGTTTG+TGG 0.455532 5_4:-59413467 Msa0860610:CDS
TAGTGGGAGTTCTATTATTG+AGG 0.459089 5_4:-59416246 Msa0860610:CDS
CTGGAAGCTGTACCTTATCA+AGG 0.459105 5_4:-59416923 Msa0860610:CDS
TTAGAATTCACTGCTGATGA+AGG 0.467360 5_4:-59416731 Msa0860610:CDS
GTCTGTTCTGAGAAATCAAT+AGG 0.467366 5_4:+59416386 None:intergenic
TTTACAGAATTGTCTGATCA+TGG 0.469703 5_4:-59416866 Msa0860610:CDS
GATCATGGTGCGCTTGATAA+GGG 0.473109 5_4:-59416851 Msa0860610:CDS
GATGCCCGTGACAGGTTAAG+AGG 0.475693 5_4:-59413494 Msa0860610:CDS
TGTAGTGCAATAGTCCTAGA+AGG 0.476451 5_4:+59415903 None:intergenic
TGTGGAGTTCCAAATACTGC+TGG 0.478895 5_4:+59416344 None:intergenic
AAAACTTGAACACAAATTAA+GGG 0.484583 5_4:-59416477 Msa0860610:CDS
GAATTCTAAAACTCCTGAAT+GGG 0.487644 5_4:+59416745 None:intergenic
TAAGACTGTTAGTTTGTACT+TGG 0.490990 5_4:+59416028 None:intergenic
GCTGCCGAAGACTTGTTTCG+AGG 0.494454 5_4:+59416543 None:intergenic
AAAATCACATTCACTGTGGC+AGG 0.496690 5_4:-59415803 Msa0860610:CDS
ACCTGTCAGCATGAAGGTTG+TGG 0.498331 5_4:-59415852 Msa0860610:CDS
TTCAGTGATGTTGAAGGAGA+TGG 0.500517 5_4:-59413411 Msa0860610:CDS
CAATCCTCGAAACAAGTCTT+CGG 0.502772 5_4:-59416547 Msa0860610:CDS
CTGCAATGGATGCCCGTGAC+AGG 0.502869 5_4:-59413502 Msa0860610:CDS
GATACTGACAAAGAGAAAAC+GGG 0.504593 5_4:-59416773 Msa0860610:CDS
TTCATCAAGTGTATCGGTGT+TGG 0.510825 5_4:-59416438 Msa0860610:CDS
CTTTCCTTCATCTACTGTAC+CGG 0.511128 5_4:+59416319 None:intergenic
AACACCGATACACTTGATGA+AGG 0.512373 5_4:+59416440 None:intergenic
TGCCGCTGAAGCTCAACTTA+AGG 0.514396 5_4:-59417959 Msa0860610:intron
TCCATTGCAGAGCTTCCAGC+TGG 0.515210 5_4:+59413515 None:intergenic
GCTATGTTTGGCTTCCAAAA+GGG 0.517465 5_4:-59416628 Msa0860610:CDS
TTATCTCCACTACCTTGATA+AGG 0.519679 5_4:+59416911 None:intergenic
TCCACAACCTTCATGCTGAC+AGG 0.519691 5_4:+59415851 None:intergenic
TTTCAATTGACAATGGCACC+TGG 0.520800 5_4:-59416280 Msa0860610:CDS
CAGATTGCTGTTCATCAGAA+AGG 0.521420 5_4:-59413380 Msa0860610:CDS
TACATGAAGCTTACTGTAGC+AGG 0.521859 5_4:-59415884 Msa0860610:CDS
GGAATAGAATTTACTTCACC+AGG 0.523063 5_4:+59413076 None:intergenic
TGTGACCATGTTTGACAACT+TGG 0.523643 5_4:+59413022 None:intergenic
ACAATCCTCTTAACCTGTCA+CGG 0.525336 5_4:+59413489 None:intergenic
TTCCGTGTCATCAATGGGGT+TGG 0.525545 5_4:-59415961 Msa0860610:CDS
TTTGTATGTATTGTCTACCA+TGG 0.527203 5_4:-59413246 Msa0860610:three_prime_UTR
CACATTCACTGTGGCAGGTG+TGG 0.527747 5_4:-59415798 Msa0860610:CDS
CGGCACGAAATTAGCCGCAA+GGG 0.530156 5_4:+59413557 None:intergenic
GCTGTACCTTATCAAGGTAG+TGG 0.534703 5_4:-59416917 Msa0860610:CDS
ACGAGAGTGTTTGTGGGTCA+AGG 0.535726 5_4:-59413460 Msa0860610:CDS
TTGTATGTATTGTCTACCAT+GGG 0.537136 5_4:-59413245 Msa0860610:three_prime_UTR
GACAATTCTGTAAAACAAGA+AGG 0.537415 5_4:+59416875 None:intergenic
GCGGCACGAAATTAGCCGCA+AGG 0.538583 5_4:+59413556 None:intergenic
TCCAGCTGGAAGCTCTGCAA+TGG 0.540046 5_4:-59413516 Msa0860610:CDS
TCATCTACTGTACCGGTCTG+TGG 0.543797 5_4:+59416326 None:intergenic
TAATCAAGGAAATGAAATTG+AGG 0.547417 5_4:+59413055 None:intergenic
TGAACGTCCACAAGAATCAC+AGG 0.548576 5_4:+59413430 None:intergenic
AGCAAGATTGAAACTCCAAA+AGG 0.548705 5_4:-59418055 Msa0860610:CDS
GAAAACCTAATTGTTGGGAG+GGG 0.550580 5_4:-59416965 Msa0860610:CDS
AGAAAACCTAATTGTTGGGA+GGG 0.551698 5_4:-59416966 Msa0860610:CDS
GCAAAACTTCAACCTGAAAG+AGG 0.552930 5_4:-59416599 Msa0860610:CDS
ATGCAGCTTACTAGAACTCT+GGG 0.553945 5_4:+59412993 None:intergenic
TACCTTAAGTTGAGCTTCAG+CGG 0.556136 5_4:+59417957 None:intergenic
CATGAGAAGACCACTCATGC+TGG 0.557723 5_4:+59416144 None:intergenic
TGTTGTGAAGCATTACATCT+GGG 0.557849 5_4:-59413311 Msa0860610:three_prime_UTR
CCCACTAGAAATTCTCTCCC+AGG 0.558842 5_4:+59416262 None:intergenic
CAGAGCACGAGAGTGTTTGT+GGG 0.559598 5_4:-59413466 Msa0860610:CDS
ACATAGCGGACTTCAATCAA+TGG 0.560186 5_4:+59416644 None:intergenic
TGTGGCGATATGGTTCCAGC+TGG 0.560904 5_4:-59413530 Msa0860610:CDS
ATCTGCCAAGTTGTCAAACA+TGG 0.563342 5_4:-59413027 Msa0860610:three_prime_UTR
TTAGAATCAGAGACAAATGA+AGG 0.564173 5_4:-59416218 Msa0860610:CDS
GAGCCACTTCAGTGCCCTTG+TGG 0.570123 5_4:-59415726 Msa0860610:CDS
TGTTGTTGTTAAGTTCGTGT+TGG 0.570261 5_4:+59418161 None:intergenic
ACTGCTGATGAAGGTTCAGT+GGG 0.571768 5_4:-59416722 Msa0860610:CDS
CACTGCTGATGAAGGTTCAG+TGG 0.573393 5_4:-59416723 Msa0860610:CDS
TGGACGTTCAGTGATGTTGA+AGG 0.573883 5_4:-59413417 Msa0860610:CDS
ACATATCTTAAAGGAACCCC+AGG 0.574705 5_4:-59413136 Msa0860610:three_prime_UTR
TTCAATTGACAATGGCACCT+GGG 0.580166 5_4:-59416279 Msa0860610:CDS
AGAACTTAAAAGAAAGATTG+GGG 0.582268 5_4:-59413279 Msa0860610:three_prime_UTR
AAAACCTTCATCAAGTGTAT+CGG 0.584178 5_4:-59416444 Msa0860610:CDS
GTGTGGTCAAGCTTTCCAGC+AGG 0.584674 5_4:-59415781 Msa0860610:CDS
CACTCATGCTGGTGTCGTGT+AGG 0.585828 5_4:+59416155 None:intergenic
AAGCATCAGTTTGCCCCTTG+CGG 0.586614 5_4:-59413571 Msa0860610:CDS
GGTTGGATACTGAACAATGT+AGG 0.587698 5_4:-59415944 Msa0860610:CDS
CTACACGACACCAGCATGAG+TGG 0.590981 5_4:-59416154 Msa0860610:CDS
AAATTATTCCATACATGAGG+AGG 0.594349 5_4:+59416695 None:intergenic
CAATCCTCTTAACCTGTCAC+GGG 0.595642 5_4:+59413490 None:intergenic
ATTCCACAAGGGCACTGAAG+TGG 0.598606 5_4:+59415723 None:intergenic
GGTGCGGGGACTTATAGCAT+TGG 0.601072 5_4:-59416074 Msa0860610:CDS
CAGACCGGTACAGTAGATGA+AGG 0.602462 5_4:-59416323 Msa0860610:CDS
TCAGTTATCGTTGACTCACA+AGG 0.603524 5_4:-59416816 Msa0860610:CDS
GGCACGAAATTAGCCGCAAG+GGG 0.604282 5_4:+59413558 None:intergenic
AACGTTACCTGTCAGCATGA+AGG 0.604821 5_4:-59415858 Msa0860610:CDS
CACAGTAGGCTGCTAACCCA+TGG 0.604888 5_4:+59413229 None:intergenic
AACAAATTATTCCATACATG+AGG 0.610239 5_4:+59416692 None:intergenic
ACTGCACCCTGTGATTCTTG+TGG 0.615018 5_4:-59413437 Msa0860610:CDS
CAGCATGCTACACTTTCTCA+AGG 0.618267 5_4:-59416524 Msa0860610:CDS
ACTGTGGCTGTATGACATTG+TGG 0.621033 5_4:-59413212 Msa0860610:three_prime_UTR
TCTAGTAAGCTGCATTGTGA+TGG 0.621624 5_4:-59412985 Msa0860610:three_prime_UTR
GAACCATATCGCCACAAAAG+CGG 0.622465 5_4:+59413537 None:intergenic
CAATGTCATACAGCCACAGT+AGG 0.626030 5_4:+59413215 None:intergenic
TTCTCAAGTACTATTCCACA+AGG 0.627240 5_4:+59415711 None:intergenic
ATCCAACCCCATTGATGACA+CGG 0.632329 5_4:+59415959 None:intergenic
CATGGGTTAGCAGCCTACTG+TGG 0.637107 5_4:-59413228 Msa0860610:three_prime_UTR
GTATTTGGAACTCCACAGAC+CGG 0.637611 5_4:-59416338 Msa0860610:CDS
TTATCGTTGACTCACAAGGA+GGG 0.640289 5_4:-59416812 Msa0860610:CDS
AAGAAAACCTAATTGTTGGG+AGG 0.645360 5_4:-59416967 Msa0860610:CDS
ACAACAAACGCACTTGCCTG+GGG 0.645657 5_4:+59413120 None:intergenic
AATTATTCCATACATGAGGA+GGG 0.646236 5_4:+59416696 None:intergenic
CCTGGGAGAGAATTTCTAGT+GGG 0.655597 5_4:-59416262 Msa0860610:CDS
AAACTTCAACCTGAAAGAGG+AGG 0.655997 5_4:-59416596 Msa0860610:CDS
ACCTGGGAGAGAATTTCTAG+TGG 0.660457 5_4:-59416263 Msa0860610:CDS
GTTATCGTTGACTCACAAGG+AGG 0.666496 5_4:-59416813 Msa0860610:CDS
CAGAAAGGCTAATTCTGATG+CGG 0.669569 5_4:-59413365 Msa0860610:exon
AATTCTGTAAAACAAGAAGG+AGG 0.679062 5_4:+59416878 None:intergenic
AACGATAACTGAAAGTACAT+CGG 0.687946 5_4:+59416827 None:intergenic
TGTCGTGTAGGAAATATGAG+AGG 0.709082 5_4:+59416167 None:intergenic
CATCTTCCGTGTCATCAATG+GGG 0.720890 5_4:-59415965 Msa0860610:CDS
GTCGTGTAGGAAATATGAGA+GGG 0.721636 5_4:+59416168 None:intergenic
TCTCAAGTACTATTCCACAA+GGG 0.727795 5_4:+59415712 None:intergenic
GAACGTCCACAAGAATCACA+GGG 0.732152 5_4:+59413431 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATATTGTATTTGTAT+TGG - chr5_4:59417409-59417428 Msa0860610:intron 10.0%
!!! CTTTTTATTTTAATTTTGTT+AGG - chr5_4:59417563-59417582 Msa0860610:intron 10.0%
!!! TTGTAATTTTATTGGAATAT+AGG - chr5_4:59413801-59413820 Msa0860610:intron 15.0%
!!! TGTAATTTTATTGGAATATA+GGG - chr5_4:59413802-59413821 Msa0860610:intron 15.0%
!! TCAAATTTCAATATCATTAA+AGG + chr5_4:59413976-59413995 None:intergenic 15.0%
!!! TTTTTTTGATATTGTTCTTT+TGG - chr5_4:59415568-59415587 Msa0860610:intron 15.0%
!!! TATTTTTATTTTCTAACCTA+AGG - chr5_4:59416328-59416347 Msa0860610:CDS 15.0%
!!! TTTTAAATATAGGATCAATT+TGG + chr5_4:59416530-59416549 None:intergenic 15.0%
!!! ATCAAAAAGGTTTTAAATAT+AGG + chr5_4:59416540-59416559 None:intergenic 15.0%
!!! TATATTTAAAACCTTTTTGA+TGG - chr5_4:59416539-59416558 Msa0860610:CDS 15.0%
!! TAGTAAATATATAATGAATC+AGG + chr5_4:59417201-59417220 None:intergenic 15.0%
!!! TTTATTTTAATTTTGTTAGG+TGG - chr5_4:59417566-59417585 Msa0860610:intron 15.0%
!! GAAATGAAATAAGTGATTAA+TGG + chr5_4:59412929-59412948 None:intergenic 20.0%
!!! TAATTACTTTTAGGATGAAA+CGG - chr5_4:59413389-59413408 Msa0860610:CDS 20.0%
!! AAAATTCTTCTCTTATGTTT+AGG + chr5_4:59413472-59413491 None:intergenic 20.0%
!! ATTCCAATAAAATTACAACT+AGG + chr5_4:59413799-59413818 None:intergenic 20.0%
!!! AATTGTTTTTTATCGTTTAC+TGG - chr5_4:59414224-59414243 Msa0860610:intron 20.0%
!! AAAACTTGAACACAAATTAA+GGG - chr5_4:59414689-59414708 Msa0860610:intron 20.0%
!!! TACAAATTTTCAATTGACAA+TGG - chr5_4:59414879-59414898 Msa0860610:intron 20.0%
!! ATTATCAAACAATATTGAAC+AGG - chr5_4:59415680-59415699 Msa0860610:intron 20.0%
!! AACAACAACTATATTTCTTT+AGG + chr5_4:59416365-59416384 None:intergenic 20.0%
!! TTGATTTACATAAATCTTAG+CGG - chr5_4:59416390-59416409 Msa0860610:CDS 20.0%
!! TCCAAAAAATAATCATATAG+CGG - chr5_4:59416877-59416896 Msa0860610:CDS 20.0%
!! CAAATATGACAAAAAAAAAG+TGG + chr5_4:59417277-59417296 None:intergenic 20.0%
!!! AAATTCCTTTTTCTTATAGA+CGG + chr5_4:59417540-59417559 None:intergenic 20.0%
!! ATAGAACTTAAAAGAAAGAT+TGG - chr5_4:59417885-59417904 Msa0860610:intron 20.0%
!! TAGAACTTAAAAGAAAGATT+GGG - chr5_4:59417886-59417905 Msa0860610:intron 20.0%
!! TTCTACAAAGAATCATAATT+TGG + chr5_4:59418000-59418019 None:intergenic 20.0%
!! ATGTTTCTTACATATCTTAA+AGG - chr5_4:59418021-59418040 Msa0860610:CDS 20.0%
! AACAAATGTTCGTAATTAGT+TGG - chr5_4:59413326-59413345 Msa0860610:three_prime_UTR 25.0%
!!! AATTACTTTTAGGATGAAAC+GGG - chr5_4:59413390-59413409 Msa0860610:CDS 25.0%
! GATTGATGTCTTTATGAATT+AGG - chr5_4:59413436-59413455 Msa0860610:CDS 25.0%
!! GAATTTTTGTTCATGTTCAT+TGG - chr5_4:59413485-59413504 Msa0860610:CDS 25.0%
! CATTGAATAATTGATGTATC+TGG + chr5_4:59413542-59413561 None:intergenic 25.0%
!! AAGATACCATTTTATTAGCA+AGG - chr5_4:59413658-59413677 Msa0860610:intron 25.0%
! TGTATATAAGAAACCATTCA+AGG + chr5_4:59413923-59413942 None:intergenic 25.0%
! TCATATTTGTATTTGTAGCT+TGG + chr5_4:59414053-59414072 None:intergenic 25.0%
! TATTGTCATGTTAAAAACCT+AGG + chr5_4:59414124-59414143 None:intergenic 25.0%
! GAATTGAACATAGTAAACAA+AGG + chr5_4:59414161-59414180 None:intergenic 25.0%
! TTGTTTACTATGTTCAATTC+AGG - chr5_4:59414161-59414180 Msa0860610:intron 25.0%
! AACAAATTATTCCATACATG+AGG + chr5_4:59414477-59414496 None:intergenic 25.0%
!!! TGGAATAATTTGTTTTCTGA+AGG - chr5_4:59414483-59414502 Msa0860610:intron 25.0%
! GAAAACTTGAACACAAATTA+AGG - chr5_4:59414688-59414707 Msa0860610:intron 25.0%
!!! GTTTTTGGTTGAAATTATCT+TGG + chr5_4:59415166-59415185 None:intergenic 25.0%
! AGATAATTTCAACCAAAAAC+TGG - chr5_4:59415166-59415185 Msa0860610:intron 25.0%
! GATAATTTCAACCAAAAACT+GGG - chr5_4:59415167-59415186 Msa0860610:intron 25.0%
! ATAAATTAGGACAGACATAA+CGG + chr5_4:59415595-59415614 None:intergenic 25.0%
! TATGTCTGTCCTAATTTATT+TGG - chr5_4:59415596-59415615 Msa0860610:intron 25.0%
! TAGAGAAAAGAATTCACAAA+AGG + chr5_4:59415777-59415796 None:intergenic 25.0%
!!! GAGTTAATTTGTTTTCTTCA+AGG - chr5_4:59415820-59415839 Msa0860610:CDS 25.0%
! AAAACAAATGTCGAAAGTTT+AGG - chr5_4:59416155-59416174 Msa0860610:CDS 25.0%
! ACTCAAGTCTCTAATTAAAT+AGG + chr5_4:59416222-59416241 None:intergenic 25.0%
! TTCCTACTAAAATCAAATAG+CGG + chr5_4:59416503-59416522 None:intergenic 25.0%
! AGAAAGAGTTGAAAAATGTT+GGG + chr5_4:59416586-59416605 None:intergenic 25.0%
! CATAAAACAAAAGAAAACAG+GGG + chr5_4:59416705-59416724 None:intergenic 25.0%
! CCATAAAACAAAAGAAAACA+GGG + chr5_4:59416706-59416725 None:intergenic 25.0%
! ACCATAAAACAAAAGAAAAC+AGG + chr5_4:59416707-59416726 None:intergenic 25.0%
!!! TTTGGTGTTTTGATTTATGA+AGG - chr5_4:59416772-59416791 Msa0860610:CDS 25.0%
!!! ACCGCTATATGATTATTTTT+TGG + chr5_4:59416881-59416900 None:intergenic 25.0%
! AAATGTGGTATAGCTATTAT+TGG - chr5_4:59416976-59416995 Msa0860610:CDS 25.0%
! TCATACGATAATGAAAACAA+TGG + chr5_4:59417079-59417098 None:intergenic 25.0%
! ATCAAATGACAAGAGAAAAT+TGG + chr5_4:59417309-59417328 None:intergenic 25.0%
!!! ATTAGCTTTTAATTCTGCAA+CGG - chr5_4:59417373-59417392 Msa0860610:intron 25.0%
!!! GTTACTTTTAATAGAAGCAA+AGG + chr5_4:59417833-59417852 None:intergenic 25.0%
! AGAACTTAAAAGAAAGATTG+GGG - chr5_4:59417887-59417906 Msa0860610:intron 25.0%
! TAATCAAGGAAATGAAATTG+AGG + chr5_4:59418114-59418133 None:intergenic 25.0%
!!! TTGGCAGATTTTAATAATCA+AGG + chr5_4:59418128-59418147 None:intergenic 25.0%
ACAATTACACAGAGAGAAAA+TGG - chr5_4:59413027-59413046 Msa0860610:three_prime_UTR 30.0%
GAAAGAACAAAAAGAACGAA+AGG - chr5_4:59413084-59413103 Msa0860610:three_prime_UTR 30.0%
AAATGTTCGTAATTAGTTGG+TGG - chr5_4:59413329-59413348 Msa0860610:three_prime_UTR 30.0%
TCTGAAAAAATGAGTCTTCT+CGG - chr5_4:59413564-59413583 Msa0860610:CDS 30.0%
CAAACACCTTGCTAATAAAA+TGG + chr5_4:59413667-59413686 None:intergenic 30.0%
! TTTATTAGCAAGGTGTTTGT+AGG - chr5_4:59413668-59413687 Msa0860610:intron 30.0%
ATACAAATGCATAGTCTGTT+AGG - chr5_4:59413708-59413727 Msa0860610:intron 30.0%
! GTGCCTAGTTGTAATTTTAT+TGG - chr5_4:59413793-59413812 Msa0860610:intron 30.0%
TATAAGAAACCATTCAAGGA+TGG + chr5_4:59413919-59413938 None:intergenic 30.0%
AGTTTATCTTAATCAGCAGT+GGG + chr5_4:59414028-59414047 None:intergenic 30.0%
AAGTTTATCTTAATCAGCAG+TGG + chr5_4:59414029-59414048 None:intergenic 30.0%
ATGCAAGAAAACCTAATTGT+TGG - chr5_4:59414195-59414214 Msa0860610:intron 30.0%
TGCAAGAAAACCTAATTGTT+GGG - chr5_4:59414196-59414215 Msa0860610:intron 30.0%
AATTCTGTAAAACAAGAAGG+AGG + chr5_4:59414291-59414310 None:intergenic 30.0%
GACAATTCTGTAAAACAAGA+AGG + chr5_4:59414294-59414313 None:intergenic 30.0%
TTTACAGAATTGTCTGATCA+TGG - chr5_4:59414300-59414319 Msa0860610:intron 30.0%
! AACGATAACTGAAAGTACAT+CGG + chr5_4:59414342-59414361 None:intergenic 30.0%
AGATACTGACAAAGAGAAAA+CGG - chr5_4:59414392-59414411 Msa0860610:intron 30.0%
!! GAATTCTAAAACTCCTGAAT+GGG + chr5_4:59414424-59414443 None:intergenic 30.0%
!! TGAATTCTAAAACTCCTGAA+TGG + chr5_4:59414425-59414444 None:intergenic 30.0%
AATTATTCCATACATGAGGA+GGG + chr5_4:59414473-59414492 None:intergenic 30.0%
AAATTATTCCATACATGAGG+AGG + chr5_4:59414474-59414493 None:intergenic 30.0%
!! GTTTTCTGAAGGTTGTATTA+TGG - chr5_4:59414494-59414513 Msa0860610:intron 30.0%
TTCTGATTTACCAAACCATA+AGG - chr5_4:59414596-59414615 Msa0860610:intron 30.0%
! GACATTTTCACTGTAAACTA+TGG - chr5_4:59414666-59414685 Msa0860610:intron 30.0%
AAAACCTTCATCAAGTGTAT+CGG - chr5_4:59414722-59414741 Msa0860610:intron 30.0%
!!! GTTTTAATTCCAGCAGTATT+TGG - chr5_4:59414813-59414832 Msa0860610:intron 30.0%
TTAGAATCAGAGACAAATGA+AGG - chr5_4:59414948-59414967 Msa0860610:intron 30.0%
!! AGCTCTAAGGATAAAAACTT+AGG - chr5_4:59415071-59415090 Msa0860610:intron 30.0%
TAAGGATAAAAACTTAGGTG+CGG - chr5_4:59415076-59415095 Msa0860610:intron 30.0%
!! ACTTATAGCATTGGTGTAAA+CGG - chr5_4:59415101-59415120 Msa0860610:intron 30.0%
! ATTGGTGTAAACGGATTTAA+AGG - chr5_4:59415110-59415129 Msa0860610:intron 30.0%
!! TAAGACTGTTAGTTTGTACT+TGG + chr5_4:59415141-59415160 None:intergenic 30.0%
AGTACTTGAGAAAGAGAAAA+TGG - chr5_4:59415466-59415485 Msa0860610:intron 30.0%
AAAACCATACTAGACAAGAA+TGG + chr5_4:59415510-59415529 None:intergenic 30.0%
TCCTAATTTATTTGGCTACT+GGG - chr5_4:59415604-59415623 Msa0860610:intron 30.0%
TACTGGGATATGTTAGAATT+TGG - chr5_4:59415620-59415639 Msa0860610:intron 30.0%
ACTGGGATATGTTAGAATTT+GGG - chr5_4:59415621-59415640 Msa0860610:intron 30.0%
CTCTATGTAAGCAATCTTAA+TGG - chr5_4:59415792-59415811 Msa0860610:CDS 30.0%
AACTATGATGACTGTTTATC+AGG + chr5_4:59415858-59415877 None:intergenic 30.0%
TGATAAACAGTCATCATAGT+TGG - chr5_4:59415857-59415876 Msa0860610:CDS 30.0%
! TTTAAGAATAGTGGAAGACT+TGG + chr5_4:59415918-59415937 None:intergenic 30.0%
AACTGCATGTTTAAGAATAG+TGG + chr5_4:59415927-59415946 None:intergenic 30.0%
! TCAATTTTCTCTCCAAATCA+CGG - chr5_4:59416100-59416119 Msa0860610:CDS 30.0%
!! AAACCTTTTTGATGGCATTT+TGG - chr5_4:59416547-59416566 Msa0860610:CDS 30.0%
!! AACCTTTTTGATGGCATTTT+GGG - chr5_4:59416548-59416567 Msa0860610:CDS 30.0%
GAAAGAGTTGAAAAATGTTG+GGG + chr5_4:59416585-59416604 None:intergenic 30.0%
GAGAAAGAGTTGAAAAATGT+TGG + chr5_4:59416587-59416606 None:intergenic 30.0%
AAACTCTTCTATCTTCCAAT+TGG - chr5_4:59416630-59416649 Msa0860610:CDS 30.0%
!!! CCCTGTTTTCTTTTGTTTTA+TGG - chr5_4:59416703-59416722 Msa0860610:CDS 30.0%
!!! TGTTCCTCTGTTTTGTTTTT+TGG - chr5_4:59416754-59416773 Msa0860610:CDS 30.0%
AACACCAAAAAACAAAACAG+AGG + chr5_4:59416761-59416780 None:intergenic 30.0%
AGTCAGTATAGTTATTGATG+AGG - chr5_4:59417008-59417027 Msa0860610:intron 30.0%
CAAAATTGAACCCAATTGAT+AGG - chr5_4:59417130-59417149 Msa0860610:intron 30.0%
GTCCAAAATAGATATACACT+GGG + chr5_4:59417160-59417179 None:intergenic 30.0%
TGTCCAAAATAGATATACAC+TGG + chr5_4:59417161-59417180 None:intergenic 30.0%
TGCTTATCAAATTGAGATTC+AGG + chr5_4:59417497-59417516 None:intergenic 30.0%
GAAATCCGTCTATAAGAAAA+AGG - chr5_4:59417532-59417551 Msa0860610:intron 30.0%
TTTGTATGTATTGTCTACCA+TGG - chr5_4:59417920-59417939 Msa0860610:intron 30.0%
TTGTATGTATTGTCTACCAT+GGG - chr5_4:59417921-59417940 Msa0860610:intron 30.0%
!! GTTGTGCAAATATTTTAAGC+AGG - chr5_4:59418064-59418083 Msa0860610:CDS 30.0%
!! AATATTTTAAGCAGGTTACC+TGG - chr5_4:59418072-59418091 Msa0860610:CDS 30.0%
! TGTTGTTGTTAAGTTCGTGT+TGG + chr5_4:59413008-59413027 None:intergenic 35.0%
AGCAAGATTGAAACTCCAAA+AGG - chr5_4:59413111-59413130 Msa0860610:three_prime_UTR 35.0%
! CTTTCGCTTTCTTTTCCTTT+TGG + chr5_4:59413129-59413148 None:intergenic 35.0%
!!! GTGAAAAGAGGGTTTTGATT+AGG + chr5_4:59413236-59413255 None:intergenic 35.0%
AAAGCGAAAGAGTGAAAAGA+GGG + chr5_4:59413247-59413266 None:intergenic 35.0%
AAAAGCGAAAGAGTGAAAAG+AGG + chr5_4:59413248-59413267 None:intergenic 35.0%
! CTTCTCTTATGTTTAGGACA+TGG + chr5_4:59413466-59413485 None:intergenic 35.0%
TTGACAATCATGCCAAGTAT+GGG + chr5_4:59413633-59413652 None:intergenic 35.0%
TTTGACAATCATGCCAAGTA+TGG + chr5_4:59413634-59413653 None:intergenic 35.0%
! ACTTGTCAGCTTAGTCATTT+TGG + chr5_4:59413890-59413909 None:intergenic 35.0%
AGTATAGATCCATCCTTGAA+TGG - chr5_4:59413907-59413926 Msa0860610:intron 35.0%
GTTAAAAACCTAGGCATGAA+AGG + chr5_4:59414115-59414134 None:intergenic 35.0%
! TTAGGTTTTCTTGCATCTGT+TGG + chr5_4:59414191-59414210 None:intergenic 35.0%
AAGAAAACCTAATTGTTGGG+AGG - chr5_4:59414199-59414218 Msa0860610:intron 35.0%
AGAAAACCTAATTGTTGGGA+GGG - chr5_4:59414200-59414219 Msa0860610:intron 35.0%
TTATCTCCACTACCTTGATA+AGG + chr5_4:59414258-59414277 None:intergenic 35.0%
GATACTGACAAAGAGAAAAC+GGG - chr5_4:59414393-59414412 Msa0860610:intron 35.0%
TTAGAATTCACTGCTGATGA+AGG - chr5_4:59414435-59414454 Msa0860610:intron 35.0%
! AGTTTTGCATAAGTCCCTTT+TGG + chr5_4:59414555-59414574 None:intergenic 35.0%
!! GTCTGTTCTGAGAAATCAAT+AGG + chr5_4:59414783-59414802 None:intergenic 35.0%
TAGTGGGAGTTCTATTATTG+AGG - chr5_4:59414920-59414939 Msa0860610:intron 35.0%
AAGGATAAAAACTTAGGTGC+GGG - chr5_4:59415077-59415096 Msa0860610:intron 35.0%
GTAAGCATTACATACCTTCT+AGG - chr5_4:59415249-59415268 Msa0860610:intron 35.0%
TGGAGTTGTTCTTAGAATTG+AGG - chr5_4:59415334-59415353 Msa0860610:intron 35.0%
TCCAAAAATCACATTCACTG+TGG - chr5_4:59415359-59415378 Msa0860610:intron 35.0%
TCTCAAGTACTATTCCACAA+GGG + chr5_4:59415457-59415476 None:intergenic 35.0%
TTCTCAAGTACTATTCCACA+AGG + chr5_4:59415458-59415477 None:intergenic 35.0%
GTCCTAATTTATTTGGCTAC+TGG - chr5_4:59415603-59415622 Msa0860610:intron 35.0%
TCCCAGTAGCCAAATAAATT+AGG + chr5_4:59415608-59415627 None:intergenic 35.0%
CTGGGATATGTTAGAATTTG+GGG - chr5_4:59415622-59415641 Msa0860610:intron 35.0%
! TTTCTTCAAGGTTAGCTAAG+AGG - chr5_4:59415832-59415851 Msa0860610:CDS 35.0%
!! ATAGTTGGTAGTCTACTGAT+GGG - chr5_4:59415872-59415891 Msa0860610:CDS 35.0%
GGAGAGAAAATTGAGAAAAG+AGG + chr5_4:59416094-59416113 None:intergenic 35.0%
! CAATTTTCTCTCCAAATCAC+GGG - chr5_4:59416101-59416120 Msa0860610:CDS 35.0%
! AATTTTCTCTCCAAATCACG+GGG - chr5_4:59416102-59416121 Msa0860610:CDS 35.0%
GTTTAGGTATCTGAACCTTA+TGG - chr5_4:59416171-59416190 Msa0860610:CDS 35.0%
!! TTAAATAGGTTTTGACCAGC+AGG + chr5_4:59416208-59416227 None:intergenic 35.0%
!! AGCCGCTATTTGATTTTAGT+AGG - chr5_4:59416498-59416517 Msa0860610:CDS 35.0%
!! ACCTTTTTGATGGCATTTTG+GGG - chr5_4:59416549-59416568 Msa0860610:CDS 35.0%
! AGATAGAAGAGTTTGTTTCG+CGG + chr5_4:59416624-59416643 None:intergenic 35.0%
ACAGGGGAAGAAAAAAACAA+TGG + chr5_4:59416689-59416708 None:intergenic 35.0%
TGATGAGGAAAAACTCATTC+TGG - chr5_4:59417023-59417042 Msa0860610:intron 35.0%
! CACCCAGTGTATATCTATTT+TGG - chr5_4:59417155-59417174 Msa0860610:intron 35.0%
TCACTACCTAAACTAAGTGT+TGG - chr5_4:59417248-59417267 Msa0860610:intron 35.0%
! TTGTTGTGAAGCATTACATC+TGG - chr5_4:59417854-59417873 Msa0860610:intron 35.0%
! TGTTGTGAAGCATTACATCT+GGG - chr5_4:59417855-59417874 Msa0860610:intron 35.0%
GGAATAGAATTTACTTCACC+AGG + chr5_4:59418093-59418112 None:intergenic 35.0%
AGATCTTTGAGCAGCTTCAA+TGG + chr5_4:59413176-59413195 None:intergenic 40.0%
!! TACCTTAAGTTGAGCTTCAG+CGG + chr5_4:59413212-59413231 None:intergenic 40.0%
GAAAAAATGAGTCTTCTCGG+TGG - chr5_4:59413567-59413586 Msa0860610:CDS 40.0%
!! GCACGGACAATTCTGAAATT+AGG - chr5_4:59413592-59413611 Msa0860610:intron 40.0%
ACTTGTCTATTCCCCATACT+TGG - chr5_4:59413618-59413637 Msa0860610:intron 40.0%
TGACAATCATGCCAAGTATG+GGG + chr5_4:59413632-59413651 None:intergenic 40.0%
GTATATGATGCATCCCTTCA+AGG - chr5_4:59413730-59413749 Msa0860610:intron 40.0%
!! GCTTTTTCTTGAGCCTTGAA+GGG + chr5_4:59413746-59413765 None:intergenic 40.0%
ATGTTGTGTTCAGCCACAAA+GGG + chr5_4:59413768-59413787 None:intergenic 40.0%
AATGTTGTGTTCAGCCACAA+AGG + chr5_4:59413769-59413788 None:intergenic 40.0%
!! CAGCTTAGTCATTTTGGATG+AGG + chr5_4:59413884-59413903 None:intergenic 40.0%
GATTGCATTCATAGACTGAG+AGG + chr5_4:59414088-59414107 None:intergenic 40.0%
AATCACTTCCTTTCATGCCT+AGG - chr5_4:59414104-59414123 Msa0860610:intron 40.0%
GAAAACCTAATTGTTGGGAG+GGG - chr5_4:59414201-59414220 Msa0860610:intron 40.0%
!! TCAGTTATCGTTGACTCACA+AGG - chr5_4:59414350-59414369 Msa0860610:intron 40.0%
!! TTATCGTTGACTCACAAGGA+GGG - chr5_4:59414354-59414373 Msa0860610:intron 40.0%
!! ACATAGCGGACTTCAATCAA+TGG + chr5_4:59414525-59414544 None:intergenic 40.0%
TGATTGAAGTCCGCTATGTT+TGG - chr5_4:59414526-59414545 Msa0860610:intron 40.0%
!! CTTTTGGAAGCCAAACATAG+CGG + chr5_4:59414539-59414558 None:intergenic 40.0%
! GCTATGTTTGGCTTCCAAAA+GGG - chr5_4:59414538-59414557 Msa0860610:intron 40.0%
GCAAAACTTCAACCTGAAAG+AGG - chr5_4:59414567-59414586 Msa0860610:intron 40.0%
AAACTTCAACCTGAAAGAGG+AGG - chr5_4:59414570-59414589 Msa0860610:intron 40.0%
TCAGAAAATCCTCCTCTTTC+AGG + chr5_4:59414582-59414601 None:intergenic 40.0%
TTGTTTCGAGGATTGCCTTA+TGG + chr5_4:59414614-59414633 None:intergenic 40.0%
CAATCCTCGAAACAAGTCTT+CGG - chr5_4:59414619-59414638 Msa0860610:intron 40.0%
AACACCGATACACTTGATGA+AGG + chr5_4:59414729-59414748 None:intergenic 40.0%
! TTCATCAAGTGTATCGGTGT+TGG - chr5_4:59414728-59414747 Msa0860610:intron 40.0%
CTTTCCTTCATCTACTGTAC+CGG + chr5_4:59414850-59414869 None:intergenic 40.0%
TTTCAATTGACAATGGCACC+TGG - chr5_4:59414886-59414905 Msa0860610:intron 40.0%
TTCAATTGACAATGGCACCT+GGG - chr5_4:59414887-59414906 Msa0860610:intron 40.0%
GTCGTGTAGGAAATATGAGA+GGG + chr5_4:59415001-59415020 None:intergenic 40.0%
TGTCGTGTAGGAAATATGAG+AGG + chr5_4:59415002-59415021 None:intergenic 40.0%
GAGTGGTCTTCTCATGATAT+TGG - chr5_4:59415029-59415048 Msa0860610:intron 40.0%
GACTTTGATTCTCAGCTCTA+AGG - chr5_4:59415058-59415077 Msa0860610:intron 40.0%
AGGATAAAAACTTAGGTGCG+GGG - chr5_4:59415078-59415097 Msa0860610:intron 40.0%
ATCATCTTCCGTGTCATCAA+TGG - chr5_4:59415199-59415218 Msa0860610:intron 40.0%
TCATCTTCCGTGTCATCAAT+GGG - chr5_4:59415200-59415219 Msa0860610:intron 40.0%
GGTTGGATACTGAACAATGT+AGG - chr5_4:59415222-59415241 Msa0860610:intron 40.0%
TGTAGTGCAATAGTCCTAGA+AGG + chr5_4:59415266-59415285 None:intergenic 40.0%
TACATGAAGCTTACTGTAGC+AGG - chr5_4:59415282-59415301 Msa0860610:intron 40.0%
! GCCACAGTGAATGTGATTTT+TGG + chr5_4:59415363-59415382 None:intergenic 40.0%
AAAATCACATTCACTGTGGC+AGG - chr5_4:59415363-59415382 Msa0860610:intron 40.0%
CACACCATTCTTGTCTAGTA+TGG - chr5_4:59415503-59415522 Msa0860610:intron 40.0%
GTAAGCAATCTTAATGGTGC+TGG - chr5_4:59415798-59415817 Msa0860610:CDS 40.0%
!! CATAGTTGGTAGTCTACTGA+TGG - chr5_4:59415871-59415890 Msa0860610:CDS 40.0%
CCAACTCATACCAACTATGA+CGG - chr5_4:59415989-59416008 Msa0860610:CDS 40.0%
GTTTAAGAAGCCGTCATAGT+TGG + chr5_4:59416002-59416021 None:intergenic 40.0%
TTGTGAGCTGAACTGACATT+TGG - chr5_4:59416032-59416051 Msa0860610:CDS 40.0%
ATATCTGTGTGTGTGAATGC+AGG + chr5_4:59416071-59416090 None:intergenic 40.0%
! TAACTTGTATCCCCGTGATT+TGG + chr5_4:59416115-59416134 None:intergenic 40.0%
AGCGATGTGGAATCAAATAG+TGG - chr5_4:59416468-59416487 Msa0860610:CDS 40.0%
AAATCAAATAGCGGCTGAAG+CGG + chr5_4:59416494-59416513 None:intergenic 40.0%
!! CCTTTTTGATGGCATTTTGG+GGG - chr5_4:59416550-59416569 Msa0860610:CDS 40.0%
GAAAGAGAGAAAAGATCTCC+AGG + chr5_4:59416665-59416684 None:intergenic 40.0%
GACTACTATGCTGACAAATG+TGG - chr5_4:59416961-59416980 Msa0860610:CDS 40.0%
ACTGGGTGTTCCTATCAATT+GGG + chr5_4:59417143-59417162 None:intergenic 40.0%
!! CTACCTAAACTAAGTGTTGG+TGG - chr5_4:59417251-59417270 Msa0860610:intron 40.0%
ACAATCCTCTTAACCTGTCA+CGG + chr5_4:59417680-59417699 None:intergenic 40.0%
TTCAGTGATGTTGAAGGAGA+TGG - chr5_4:59417755-59417774 Msa0860610:intron 40.0%
! CAGATTGCTGTTCATCAGAA+AGG - chr5_4:59417786-59417805 Msa0860610:intron 40.0%
CAGAAAGGCTAATTCTGATG+CGG - chr5_4:59417801-59417820 Msa0860610:intron 40.0%
ACATATCTTAAAGGAACCCC+AGG - chr5_4:59418030-59418049 Msa0860610:CDS 40.0%
ATCTGCCAAGTTGTCAAACA+TGG - chr5_4:59418139-59418158 Msa0860610:exon 40.0%
TGTGACCATGTTTGACAACT+TGG + chr5_4:59418147-59418166 None:intergenic 40.0%
ATGCAGCTTACTAGAACTCT+GGG + chr5_4:59418176-59418195 None:intergenic 40.0%
AATGCAGCTTACTAGAACTC+TGG + chr5_4:59418177-59418196 None:intergenic 40.0%
TCTAGTAAGCTGCATTGTGA+TGG - chr5_4:59418181-59418200 Msa0860610:five_prime_UTR 40.0%
CGTACGCGAATCATCATCAT+TGG - chr5_4:59413271-59413290 Msa0860610:three_prime_UTR 45.0%
!! GGCTTTTTCTTGAGCCTTGA+AGG + chr5_4:59413747-59413766 None:intergenic 45.0%
GCTCAAGAAAAAGCCCTTTG+TGG - chr5_4:59413752-59413771 Msa0860610:intron 45.0%
CAATTCCCCTCCCAACAATT+AGG + chr5_4:59414209-59414228 None:intergenic 45.0%
CTGGAAGCTGTACCTTATCA+AGG - chr5_4:59414243-59414262 Msa0860610:intron 45.0%
GCTGTACCTTATCAAGGTAG+TGG - chr5_4:59414249-59414268 Msa0860610:intron 45.0%
TGATCATGGTGCGCTTGATA+AGG - chr5_4:59414314-59414333 Msa0860610:intron 45.0%
GATCATGGTGCGCTTGATAA+GGG - chr5_4:59414315-59414334 Msa0860610:intron 45.0%
!! GTTATCGTTGACTCACAAGG+AGG - chr5_4:59414353-59414372 Msa0860610:intron 45.0%
AAAACGGGAACAACCCATTC+AGG - chr5_4:59414408-59414427 Msa0860610:intron 45.0%
ACTGCTGATGAAGGTTCAGT+GGG - chr5_4:59414444-59414463 Msa0860610:intron 45.0%
! CGCTATGTTTGGCTTCCAAA+AGG - chr5_4:59414537-59414556 Msa0860610:intron 45.0%
TCGAGGATTGCCTTATGGTT+TGG + chr5_4:59414609-59414628 None:intergenic 45.0%
CAGCATGCTACACTTTCTCA+AGG - chr5_4:59414642-59414661 Msa0860610:intron 45.0%
TGTGGAGTTCCAAATACTGC+TGG + chr5_4:59414825-59414844 None:intergenic 45.0%
! GTATTTGGAACTCCACAGAC+CGG - chr5_4:59414828-59414847 Msa0860610:intron 45.0%
! ACCTGGGAGAGAATTTCTAG+TGG - chr5_4:59414903-59414922 Msa0860610:intron 45.0%
!! CCTGGGAGAGAATTTCTAGT+GGG - chr5_4:59414904-59414923 Msa0860610:intron 45.0%
!! ATGCTTGCTGACCCAGTTTT+TGG + chr5_4:59415181-59415200 None:intergenic 45.0%
CATCTTCCGTGTCATCAATG+GGG - chr5_4:59415201-59415220 Msa0860610:intron 45.0%
! ATCCAACCCCATTGATGACA+CGG + chr5_4:59415210-59415229 None:intergenic 45.0%
AACGTTACCTGTCAGCATGA+AGG - chr5_4:59415308-59415327 Msa0860610:intron 45.0%
AGACAAGAATGGTGTGAGAG+AGG + chr5_4:59415499-59415518 None:intergenic 45.0%
GTTAGAATTTGGGGATCCAG+CGG - chr5_4:59415631-59415650 Msa0860610:intron 45.0%
! ACGATATAAGCTTTTGCCGC+TGG + chr5_4:59415650-59415669 None:intergenic 45.0%
! CCGTCATAGTTGGTATGAGT+TGG + chr5_4:59415992-59416011 None:intergenic 45.0%
CAGGAACTGCAATCTCCATA+AGG + chr5_4:59416189-59416208 None:intergenic 45.0%
! TTCTAACCTAAGGAGTGCAG+CGG - chr5_4:59416338-59416357 Msa0860610:CDS 45.0%
AAATCTTAGCGGCGCTATAG+CGG - chr5_4:59416401-59416420 Msa0860610:CDS 45.0%
CGCTACGATTATTACCGTAG+CGG + chr5_4:59416452-59416471 None:intergenic 45.0%
CGGTAATAATCGTAGCGATG+TGG - chr5_4:59416455-59416474 Msa0860610:CDS 45.0%
CCCCCAAAATGCCATCAAAA+AGG + chr5_4:59416553-59416572 None:intergenic 45.0%
TCCAATTGGAAAACGCTACC+TGG - chr5_4:59416644-59416663 Msa0860610:CDS 45.0%
! TCCAGGTAGCGTTTTCCAAT+TGG + chr5_4:59416648-59416667 None:intergenic 45.0%
TAGTAGTCAATCCCGGATAG+CGG + chr5_4:59416949-59416968 None:intergenic 45.0%
GTCAGCATAGTAGTCAATCC+CGG + chr5_4:59416956-59416975 None:intergenic 45.0%
CACTGGGTGTTCCTATCAAT+TGG + chr5_4:59417144-59417163 None:intergenic 45.0%
TGGCCACCAACACTTAGTTT+AGG + chr5_4:59417257-59417276 None:intergenic 45.0%
!!! CTAATTTCGTGCCGCTTTTG+TGG - chr5_4:59417618-59417637 Msa0860610:intron 45.0%
GAACCATATCGCCACAAAAG+CGG + chr5_4:59417632-59417651 None:intergenic 45.0%
CAATCCTCTTAACCTGTCAC+GGG + chr5_4:59417679-59417698 None:intergenic 45.0%
GAACGTCCACAAGAATCACA+GGG + chr5_4:59417738-59417757 None:intergenic 45.0%
TGAACGTCCACAAGAATCAC+AGG + chr5_4:59417739-59417758 None:intergenic 45.0%
TGGACGTTCAGTGATGTTGA+AGG - chr5_4:59417749-59417768 Msa0860610:intron 45.0%
CAATGTCATACAGCCACAGT+AGG + chr5_4:59417954-59417973 None:intergenic 45.0%
ACTGTGGCTGTATGACATTG+TGG - chr5_4:59417954-59417973 Msa0860610:intron 45.0%
! GCATTGTGATGGTGTGCATT+TGG - chr5_4:59418192-59418211 Msa0860610:five_prime_UTR 45.0%
!!! TTAATTTAATAATTACTTTT+AGG - chr5_4:59413380-59413399 Msa0860610:CDS 5.0%
!!! TATTTATATTTTCTTATAAA+CGG + chr5_4:59416281-59416300 None:intergenic 5.0%
TGCCGCTGAAGCTCAACTTA+AGG - chr5_4:59413207-59413226 Msa0860610:three_prime_UTR 50.0%
CACTGCTGATGAAGGTTCAG+TGG - chr5_4:59414443-59414462 Msa0860610:intron 50.0%
! TCATCTACTGTACCGGTCTG+TGG + chr5_4:59414843-59414862 None:intergenic 50.0%
CAGACCGGTACAGTAGATGA+AGG - chr5_4:59414843-59414862 Msa0860610:intron 50.0%
CCCACTAGAAATTCTCTCCC+AGG + chr5_4:59414907-59414926 None:intergenic 50.0%
CATGAGAAGACCACTCATGC+TGG + chr5_4:59415025-59415044 None:intergenic 50.0%
TTCCGTGTCATCAATGGGGT+TGG - chr5_4:59415205-59415224 Msa0860610:intron 50.0%
ACCTGTCAGCATGAAGGTTG+TGG - chr5_4:59415314-59415333 Msa0860610:intron 50.0%
TCCACAACCTTCATGCTGAC+AGG + chr5_4:59415318-59415337 None:intergenic 50.0%
AGCTTTCCAGCAGGCAGAAT+TGG - chr5_4:59415394-59415413 Msa0860610:intron 50.0%
! GCTTTTCCAATTCTGCCTGC+TGG + chr5_4:59415403-59415422 None:intergenic 50.0%
!! ATTCCACAAGGGCACTGAAG+TGG + chr5_4:59415446-59415465 None:intergenic 50.0%
ATGGAGATTGCAGTTCCTGC+TGG - chr5_4:59416190-59416209 Msa0860610:CDS 50.0%
ATAGCAGCAACGAACCGCTA+CGG - chr5_4:59416435-59416454 Msa0860610:CDS 50.0%
! AAGAGTTTGTTTCGCGGCGT+AGG + chr5_4:59416618-59416637 None:intergenic 50.0%
AAGCATCAGTTTGCCCCTTG+CGG - chr5_4:59417595-59417614 Msa0860610:intron 50.0%
!! TCAGAGCACGAGAGTGTTTG+TGG - chr5_4:59417699-59417718 Msa0860610:intron 50.0%
!! CAGAGCACGAGAGTGTTTGT+GGG - chr5_4:59417700-59417719 Msa0860610:intron 50.0%
!! ACGAGAGTGTTTGTGGGTCA+AGG - chr5_4:59417706-59417725 Msa0860610:intron 50.0%
ACTGCACCCTGTGATTCTTG+TGG - chr5_4:59417729-59417748 Msa0860610:intron 50.0%
ACAACAAACGCACTTGCCTG+GGG + chr5_4:59418049-59418068 None:intergenic 50.0%
CACAACAAACGCACTTGCCT+GGG + chr5_4:59418050-59418069 None:intergenic 50.0%
GAGTCTTCTCGGTGGAAGCA+CGG - chr5_4:59413575-59413594 Msa0860610:CDS 55.0%
TGGGTCTCCCTCCTCATGTA+TGG - chr5_4:59414463-59414482 Msa0860610:intron 55.0%
! GCTGCCGAAGACTTGTTTCG+AGG + chr5_4:59414626-59414645 None:intergenic 55.0%
!! CACTCATGCTGGTGTCGTGT+AGG + chr5_4:59415014-59415033 None:intergenic 55.0%
CTACACGACACCAGCATGAG+TGG - chr5_4:59415012-59415031 Msa0860610:intron 55.0%
GGTGCGGGGACTTATAGCAT+TGG - chr5_4:59415092-59415111 Msa0860610:intron 55.0%
CACATTCACTGTGGCAGGTG+TGG - chr5_4:59415368-59415387 Msa0860610:intron 55.0%
GTGTGGTCAAGCTTTCCAGC+AGG - chr5_4:59415385-59415404 Msa0860610:intron 55.0%
TTAGGTCCGCTGCACTCCTT+AGG + chr5_4:59416347-59416366 None:intergenic 55.0%
GGCACGAAATTAGCCGCAAG+GGG + chr5_4:59417611-59417630 None:intergenic 55.0%
CGGCACGAAATTAGCCGCAA+GGG + chr5_4:59417612-59417631 None:intergenic 55.0%
!!! GTGCCGCTTTTGTGGCGATA+TGG - chr5_4:59417626-59417645 Msa0860610:intron 55.0%
TGTGGCGATATGGTTCCAGC+TGG - chr5_4:59417636-59417655 Msa0860610:intron 55.0%
TCCAGCTGGAAGCTCTGCAA+TGG - chr5_4:59417650-59417669 Msa0860610:intron 55.0%
TCCATTGCAGAGCTTCCAGC+TGG + chr5_4:59417654-59417673 None:intergenic 55.0%
GATGCCCGTGACAGGTTAAG+AGG - chr5_4:59417672-59417691 Msa0860610:intron 55.0%
CACAGTAGGCTGCTAACCCA+TGG + chr5_4:59417940-59417959 None:intergenic 55.0%
!! CATGGGTTAGCAGCCTACTG+TGG - chr5_4:59417938-59417957 Msa0860610:intron 55.0%
GCACAACAAACGCACTTGCC+TGG + chr5_4:59418051-59418070 None:intergenic 55.0%
GAGCCACTTCAGTGCCCTTG+TGG - chr5_4:59415440-59415459 Msa0860610:intron 60.0%
GCGGCACGAAATTAGCCGCA+AGG + chr5_4:59417613-59417632 None:intergenic 60.0%
CTGCAATGGATGCCCGTGAC+AGG - chr5_4:59417664-59417683 Msa0860610:intron 60.0%
! TCCCGGATAGCGGTGCGTAG+CGG + chr5_4:59416939-59416958 None:intergenic 65.0%
GGCCGCTACGCACCGCTATC+CGG - chr5_4:59416934-59416953 Msa0860610:CDS 70.0%
GCCGCTACGCACCGCTATCC+GGG - chr5_4:59416935-59416954 Msa0860610:CDS 70.0%
GGCGCTATAGCGGCTGCGCG+TGG - chr5_4:59416411-59416430 Msa0860610:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 59412924 59418264 59412924 ID=Msa0860610;Name=Msa0860610
chr5_4 mRNA 59412924 59418264 59412924 ID=Msa0860610-mRNA-1;Parent=Msa0860610;Name=Msa0860610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=122|1|1|1|1|1|3|452|571
chr5_4 exon 59412924 59413603 59412924 ID=Msa0860610-mRNA-1:exon:18241;Parent=Msa0860610-mRNA-1
chr5_4 exon 59415701 59417005 59415701 ID=Msa0860610-mRNA-1:exon:18240;Parent=Msa0860610-mRNA-1
chr5_4 exon 59417960 59418264 59417960 ID=Msa0860610-mRNA-1:exon:18239;Parent=Msa0860610-mRNA-1
chr5_4 five_prime_UTR 59418143 59418264 59418143 ID=Msa0860610-mRNA-1:five_prime_utr;Parent=Msa0860610-mRNA-1
chr5_4 CDS 59417960 59418142 59417960 ID=Msa0860610-mRNA-1:cds;Parent=Msa0860610-mRNA-1
chr5_4 CDS 59415701 59417005 59415701 ID=Msa0860610-mRNA-1:cds;Parent=Msa0860610-mRNA-1
chr5_4 CDS 59413376 59413603 59413376 ID=Msa0860610-mRNA-1:cds;Parent=Msa0860610-mRNA-1
chr5_4 three_prime_UTR 59412924 59413375 59412924 ID=Msa0860610-mRNA-1:three_prime_utr;Parent=Msa0860610-mRNA-1
Gene Sequence

>Msa0860610

ATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGATAGAGAAAGAACAAAAAGAACGAAAGGAAAAAGCAAGATTGAAACTCCAAAAGGAAAAGAAAGCGAAAGAAGAAGCTCGTATTCAAAGAGAAGCCATTGAAGCTGCTCAAAGATCTCGTCGTATTGATGCCGCTGAAGCTCAACTTAAGGCTGACCAACAGATGCAAGAAAACCTAATTGTTGGGAGGGGAATTGTTTTTTATCGTTTACTGGAAGCTGTACCTTATCAAGGTAGTGGAGATAAGATCAAACTGCCTCCTTCTTGTTTTACAGAATTGTCTGATCATGGTGCGCTTGATAAGGGACCGATGTACTTTCAGTTATCGTTGACTCACAAGGAGGGCTCTTCAATCACTCAAGATACTGACAAAGAGAAAACGGGAACAACCCATTCAGGAGTTTTAGAATTCACTGCTGATGAAGGTTCAGTGGGTCTCCCTCCTCATGTATGGAATAATTTGTTTTCTGAAGGTTGTATTATGGAATCTCCATTGATTGAAGTCCGCTATGTTTGGCTTCCAAAAGGGACTTATGCAAAACTTCAACCTGAAAGAGGAGGATTTTCTGATTTACCAAACCATAAGGCAATCCTCGAAACAAGTCTTCGGCAGCATGCTACACTTTCTCAAGGCGACATTTTCACTGTAAACTATGGAAAACTTGAACACAAATTAAGGGTGCTTGAGTTAAAACCTTCATCAAGTGTATCGGTGTTGGAAACAGATATCGAAGTTGACATAGTTGATCCTATTGATTTCTCAGAACAGACTGATCAACATGTTTTAATTCCAGCAGTATTTGGAACTCCACAGACCGGTACAGTAGATGAAGGAAAGTTTGTGTACTACAAATTTTCAATTGACAATGGCACCTGGGAGAGAATTTCTAGTGGGAGTTCTATTATTGAGGTCAAATTAGAATCAGAGACAAATGAAGGTGACACTGATCTTTTCATTTCTAGACACCCTCTCATATTTCCTACACGACACCAGCATGAGTGGTCTTCTCATGATATTGGATCAAAGACTTTGATTCTCAGCTCTAAGGATAAAAACTTAGGTGCGGGGACTTATAGCATTGGTGTAAACGGATTTAAAGGACTGACCAAGTACAAACTAACAGTCTTAATCCAAGATAATTTCAACCAAAAACTGGGTCAGCAAGCATCATCTTCCGTGTCATCAATGGGGTTGGATACTGAACAATGTAGGAATTGTAAGCATTACATACCTTCTAGGACTATTGCACTACATGAAGCTTACTGTAGCAGGCATAACGTTACCTGTCAGCATGAAGGTTGTGGAGTTGTTCTTAGAATTGAGGAGTCCAAAAATCACATTCACTGTGGCAGGTGTGGTCAAGCTTTCCAGCAGGCAGAATTGGAAAAGCATATGAAAGTTTTTCACGAGCCACTTCAGTGCCCTTGTGGAATAGTACTTGAGAAAGAGAAAATGGTGGAACATCAAGCATCAGTTTGCCCCTTGCGGCTAATTTCGTGCCGCTTTTGTGGCGATATGGTTCCAGCTGGAAGCTCTGCAATGGATGCCCGTGACAGGTTAAGAGGATTGTCAGAGCACGAGAGTGTTTGTGGGTCAAGGACTGCACCCTGTGATTCTTGTGGACGTTCAGTGATGTTGAAGGAGATGGATATACATCAGATTGCTGTTCATCAGAAAGGCTAA

Protein sequence

>Msa0860610

MDFELRRAREKIEKEQKERKEKARLKLQKEKKAKEEARIQREAIEAAQRSRRIDAAEAQLKADQQMQENLIVGRGIVFYRLLEAVPYQGSGDKIKLPPSCFTELSDHGALDKGPMYFQLSLTHKEGSSITQDTDKEKTGTTHSGVLEFTADEGSVGLPPHVWNNLFSEGCIMESPLIEVRYVWLPKGTYAKLQPERGGFSDLPNHKAILETSLRQHATLSQGDIFTVNYGKLEHKLRVLELKPSSSVSVLETDIEVDIVDPIDFSEQTDQHVLIPAVFGTPQTGTVDEGKFVYYKFSIDNGTWERISSGSSIIEVKLESETNEGDTDLFISRHPLIFPTRHQHEWSSHDIGSKTLILSSKDKNLGAGTYSIGVNGFKGLTKYKLTVLIQDNFNQKLGQQASSSVSSMGLDTEQCRNCKHYIPSRTIALHEAYCSRHNVTCQHEGCGVVLRIEESKNHIHCGRCGQAFQQAELEKHMKVFHEPLQCPCGIVLEKEKMVEHQASVCPLRLISCRFCGDMVPAGSSAMDARDRLRGLSEHESVCGSRTAPCDSCGRSVMLKEMDIHQIAVHQKG*