Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861950 | XP_003617340.1 | 99.635 | 274 | 1 | 0 | 1 | 274 | 1 | 274 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861950 | sp|Q6PGS5|TLC4B_XENLA | 29.864 | 221 | 141 | 7 | 60 | 274 | 37 | 249 | 8.49e-23 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861950 | G7K374 | 99.635 | 274 | 1 | 0 | 1 | 274 | 1 | 274 | 0.0 | 560 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0786990 | Msa0861950 | 0.912787 | 1.305258e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861950 | MtrunA17_Chr5g0442461 | 99.635 | 274 | 1 | 0 | 1 | 274 | 1 | 274 | 0.0 | 560 |
| Msa0861950 | MtrunA17_Chr3g0108871 | 49.583 | 240 | 121 | 0 | 35 | 274 | 22 | 261 | 1.86e-81 | 246 |
| Msa0861950 | MtrunA17_Chr3g0095631 | 87.200 | 125 | 13 | 2 | 111 | 233 | 5 | 128 | 2.87e-72 | 218 |
| Msa0861950 | MtrunA17_Chr3g0095641 | 77.049 | 122 | 28 | 0 | 1 | 122 | 1 | 122 | 2.08e-65 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861950 | AT4G19645.2 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 4.91e-142 | 400 |
| Msa0861950 | AT4G19645.1 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 4.91e-142 | 400 |
| Msa0861950 | AT4G19645.3 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 4.91e-142 | 400 |
| Msa0861950 | AT4G19645.5 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 4.91e-142 | 400 |
| Msa0861950 | AT4G19645.4 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 4.91e-142 | 400 |
| Msa0861950 | AT1G31300.3 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 4.07e-131 | 373 |
| Msa0861950 | AT1G31300.1 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 4.07e-131 | 373 |
| Msa0861950 | AT1G31300.2 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 4.07e-131 | 373 |
| Msa0861950 | AT4G10360.1 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.57e-86 | 257 |
| Msa0861950 | AT4G10360.3 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.57e-86 | 257 |
| Msa0861950 | AT4G10360.2 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.57e-86 | 257 |
Find 73 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGTGACTTGACAAATTT+TGG | 0.096827 | 5_4:-61481894 | None:intergenic |
| ATTCCATATACTTCCATTAT+TGG | 0.162120 | 5_4:+61478240 | Msa0861950:CDS |
| TCAAGATATTTCTCGTTAAA+AGG | 0.179095 | 5_4:+61478116 | Msa0861950:five_prime_UTR |
| CTGACCTGGGGATGATATTT+TGG | 0.191833 | 5_4:+61479980 | Msa0861950:CDS |
| TGCGTTGTCTACGTTTGCTC+TGG | 0.295133 | 5_4:+61478736 | Msa0861950:CDS |
| GGTTTCTGTTGGTTACTTCA+TGG | 0.300633 | 5_4:+61479957 | Msa0861950:intron |
| GTCTCTGTGTCCTTTCCCTC+TGG | 0.301841 | 5_4:+61481690 | Msa0861950:three_prime_UTR |
| AGAAATATCTTGAAGTTTGT+TGG | 0.324061 | 5_4:-61478106 | None:intergenic |
| CCACCAATAATGGAAGTATA+TGG | 0.336930 | 5_4:-61478243 | None:intergenic |
| CAAACAAATTAGCCTGGTTC+TGG | 0.356158 | 5_4:-61478188 | None:intergenic |
| TTCAGCAGATGCACCCCTTT+GGG | 0.368570 | 5_4:+61481512 | Msa0861950:CDS |
| GTACACGAACAAAAGTATTC+TGG | 0.379427 | 5_4:-61480546 | None:intergenic |
| TATAGGTTATGCTGATGTTC+AGG | 0.389227 | 5_4:+61481660 | Msa0861950:three_prime_UTR |
| GTTCAGCAGATGCACCCCTT+TGG | 0.395777 | 5_4:+61481511 | Msa0861950:CDS |
| CAAAAGCTTATCTCATCAAT+GGG | 0.403192 | 5_4:+61480395 | Msa0861950:CDS |
| AGAGCAGAAAAGAACATGTT+TGG | 0.404497 | 5_4:+61481749 | Msa0861950:three_prime_UTR |
| TCTCTGTGTCCTTTCCCTCT+GGG | 0.405055 | 5_4:+61481691 | Msa0861950:three_prime_UTR |
| TGTCAGTTATGAACTTGATT+TGG | 0.405632 | 5_4:+61481566 | Msa0861950:CDS |
| AACAACTATGTCTTTGTACT+TGG | 0.408867 | 5_4:+61478652 | Msa0861950:CDS |
| AATTAATGTACATAAAGAAT+AGG | 0.411025 | 5_4:-61481830 | None:intergenic |
| TCAAAAGCTTATCTCATCAA+TGG | 0.412137 | 5_4:+61480394 | Msa0861950:CDS |
| TGCTTACTTGCACTTTGATC+AGG | 0.414301 | 5_4:+61480580 | Msa0861950:CDS |
| TGGTTACTTCATGGCTGACC+TGG | 0.414342 | 5_4:+61479966 | Msa0861950:CDS |
| GGCTGGAATAGCTCTTAAAA+TGG | 0.414912 | 5_4:-61478477 | None:intergenic |
| GCGTTGTCTACGTTTGCTCT+GGG | 0.417870 | 5_4:+61478737 | Msa0861950:CDS |
| TACCATCTCAAATTGATTCC+AGG | 0.421230 | 5_4:-61480259 | None:intergenic |
| CTCGCTATCAGAATATAGAT+TGG | 0.432922 | 5_4:-61478684 | None:intergenic |
| ATTAATGTACATAAAGAATA+GGG | 0.432994 | 5_4:-61481829 | None:intergenic |
| ACAACTAGTGTTTGCCCAAA+GGG | 0.436489 | 5_4:-61481526 | None:intergenic |
| ATCTCTGAGACAACAACTCC+TGG | 0.443341 | 5_4:+61480241 | Msa0861950:CDS |
| AACGTATTGAGTGGAATAAC+CGG | 0.480032 | 5_4:+61478512 | Msa0861950:CDS |
| TGAAGGTATCTTGATGTAGC+TGG | 0.481580 | 5_4:+61480361 | Msa0861950:intron |
| CCTTCACAAACAAATTAGCC+TGG | 0.487479 | 5_4:-61478194 | None:intergenic |
| TGTGATATTCATTGCTTGGC+TGG | 0.488189 | 5_4:+61480420 | Msa0861950:CDS |
| TATTCAATGTTGAGTGGAGA+AGG | 0.490363 | 5_4:+61480193 | Msa0861950:CDS |
| CCAGGCTAATTTGTTTGTGA+AGG | 0.491470 | 5_4:+61478194 | Msa0861950:CDS |
| GGTTACTTCATGGCTGACCT+GGG | 0.492658 | 5_4:+61479967 | Msa0861950:CDS |
| GAACATGTTTGGATCAATTG+TGG | 0.496224 | 5_4:+61481760 | Msa0861950:three_prime_UTR |
| TTCTCCACTCAACATTGAAT+AGG | 0.506976 | 5_4:-61480191 | None:intergenic |
| GGGTTGTGATATTCATTGCT+TGG | 0.509380 | 5_4:+61480416 | Msa0861950:CDS |
| ACGTTGGATTCTAGTGAGGC+TGG | 0.514845 | 5_4:-61478494 | None:intergenic |
| ATAACAGGTGAGTGGAGAAA+AGG | 0.517859 | 5_4:+61478074 | Msa0861950:intron |
| CCATATACTTCCATTATTGG+TGG | 0.519713 | 5_4:+61478243 | Msa0861950:CDS |
| TCACATATCCTCACTGCGAT+CGG | 0.526448 | 5_4:+61476891 | Msa0861950:five_prime_UTR |
| AAAGGATAGTGTCGCAATGT+TGG | 0.527760 | 5_4:+61478134 | Msa0861950:exon |
| TTCATAACTGACAGCACCAC+TGG | 0.530852 | 5_4:-61481556 | None:intergenic |
| ATGTGAAAACCCTAAATCGA+TGG | 0.536366 | 5_4:-61476874 | None:intergenic |
| TTATTGCGACAGGTTTCTGT+TGG | 0.538429 | 5_4:+61479946 | Msa0861950:intron |
| GTTGTCTACGTTTGCTCTGG+GGG | 0.543652 | 5_4:+61478739 | Msa0861950:CDS |
| TGTGAAAACCCTAAATCGAT+GGG | 0.557758 | 5_4:-61476873 | None:intergenic |
| ATGGAAGTATATGGAATCAG+AGG | 0.569837 | 5_4:-61478234 | None:intergenic |
| GGTTATTCCACTCAATACGT+TGG | 0.581665 | 5_4:-61478510 | None:intergenic |
| TACTCATATCCACCAAGAGC+AGG | 0.583577 | 5_4:-61480009 | None:intergenic |
| CGTTGTCTACGTTTGCTCTG+GGG | 0.587028 | 5_4:+61478738 | Msa0861950:CDS |
| TTGATGTAGCTGGAATGAAA+AGG | 0.589122 | 5_4:+61480371 | Msa0861950:CDS |
| CTCCTGGAATCAATTTGAGA+TGG | 0.592012 | 5_4:+61480257 | Msa0861950:CDS |
| AACAACTAGTGTTTGCCCAA+AGG | 0.597950 | 5_4:-61481527 | None:intergenic |
| GTTACTTCATGGCTGACCTG+GGG | 0.598137 | 5_4:+61479968 | Msa0861950:CDS |
| CTAGAATCCAACGTATTGAG+TGG | 0.603281 | 5_4:+61478503 | Msa0861950:CDS |
| AAAACCAAAATATCATCCCC+AGG | 0.607335 | 5_4:-61479984 | None:intergenic |
| ATTCAATGTTGAGTGGAGAA+GGG | 0.619830 | 5_4:+61480194 | Msa0861950:CDS |
| AGGGAAAGGACACAGAGACA+AGG | 0.620919 | 5_4:-61481686 | None:intergenic |
| AGGGCAGCTGTACACATACA+TGG | 0.625873 | 5_4:+61480213 | Msa0861950:CDS |
| ATTCAAATCATACCAGAACC+AGG | 0.632366 | 5_4:+61478176 | Msa0861950:CDS |
| CAGCTGAACTTCTTACAGAA+CGG | 0.632644 | 5_4:+61478708 | Msa0861950:CDS |
| TGGAAGTATATGGAATCAGA+GGG | 0.646274 | 5_4:-61478233 | None:intergenic |
| CAATACGTTGGATTCTAGTG+AGG | 0.649208 | 5_4:-61478498 | None:intergenic |
| GTAGCCTATTCAATGTTGAG+TGG | 0.649521 | 5_4:+61480187 | Msa0861950:CDS |
| ATTCATATATAACAGGTGAG+TGG | 0.653816 | 5_4:+61478066 | Msa0861950:intron |
| TAATGAAGACATTAGCGAAG+AGG | 0.656512 | 5_4:+61481611 | Msa0861950:CDS |
| CAACTAGTGTTTGCCCAAAG+GGG | 0.686558 | 5_4:-61481525 | None:intergenic |
| ACTAGTTGTTGTTGTACCAG+TGG | 0.692219 | 5_4:+61481540 | Msa0861950:CDS |
| AAAAGCTTATCTCATCAATG+GGG | 0.737817 | 5_4:+61480396 | Msa0861950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCTAACATAATTTA+AGG | + | chr5_4:61478326-61478345 | Msa0861950:intron | 10.0% |
| !!! | ATTGATAATTTTATTTCTGT+TGG | + | chr5_4:61477219-61477238 | Msa0861950:intron | 15.0% |
| !!! | AATTTAGAATGGAATTTTTA+GGG | + | chr5_4:61477319-61477338 | Msa0861950:intron | 15.0% |
| !!! | ATGGTTTTATTATTTAACTT+TGG | + | chr5_4:61477735-61477754 | Msa0861950:intron | 15.0% |
| !! | TGTAATTATTCATATATAAC+AGG | + | chr5_4:61478059-61478078 | Msa0861950:intron | 15.0% |
| !!! | TTATGAGTTTTAGATAAATT+AGG | + | chr5_4:61478882-61478901 | Msa0861950:intron | 15.0% |
| !!! | TATGAGTTTTAGATAAATTA+GGG | + | chr5_4:61478883-61478902 | Msa0861950:intron | 15.0% |
| !! | TAGTAATTGTTAATATTACA+CGG | + | chr5_4:61479000-61479019 | Msa0861950:intron | 15.0% |
| !! | AAAAAAAAATCACAACATAA+TGG | - | chr5_4:61480307-61480326 | None:intergenic | 15.0% |
| !!! | TTTTTTGTGAAAGTAAATAT+AGG | + | chr5_4:61481643-61481662 | Msa0861950:three_prime_UTR | 15.0% |
| !! | ATTAATGTACATAAAGAATA+GGG | - | chr5_4:61481832-61481851 | None:intergenic | 15.0% |
| !! | AATTAATGTACATAAAGAAT+AGG | - | chr5_4:61481833-61481852 | None:intergenic | 15.0% |
| !! | TTAAAGTATGATGAGAAAAA+CGG | - | chr5_4:61476968-61476987 | None:intergenic | 20.0% |
| !! | GTAATAATAACAGAATAACA+AGG | - | chr5_4:61477053-61477072 | None:intergenic | 20.0% |
| !! | ATATACCAATCAGTAATTAA+CGG | - | chr5_4:61477150-61477169 | None:intergenic | 20.0% |
| !!! | TATACATTTGGAATTTAGAA+TGG | + | chr5_4:61477308-61477327 | Msa0861950:intron | 20.0% |
| !!! | GAATTTAGAATGGAATTTTT+AGG | + | chr5_4:61477318-61477337 | Msa0861950:intron | 20.0% |
| !!! | AACTTTTTAGTATCTTTGTT+TGG | + | chr5_4:61477640-61477659 | Msa0861950:intron | 20.0% |
| !!! | TTATTATTTAACTTTGGATG+TGG | + | chr5_4:61477741-61477760 | Msa0861950:intron | 20.0% |
| !!! | TCTAAATTTTCTATTTTTCC+AGG | + | chr5_4:61478423-61478442 | Msa0861950:intron | 20.0% |
| !! | TAGTTGTTATAAAAATGGAA+TGG | - | chr5_4:61478640-61478659 | None:intergenic | 20.0% |
| !! | AGACATAGTTGTTATAAAAA+TGG | - | chr5_4:61478645-61478664 | None:intergenic | 20.0% |
| !!! | ATGAGTTTTAGATAAATTAG+GGG | + | chr5_4:61478884-61478903 | Msa0861950:intron | 20.0% |
| !! | TTATCAATGATATTTCATCA+TGG | - | chr5_4:61478931-61478950 | None:intergenic | 20.0% |
| !! | ATTACTAATGATACTAACAT+TGG | - | chr5_4:61478987-61479006 | None:intergenic | 20.0% |
| !! | AGTAATTGTTAATATTACAC+GGG | + | chr5_4:61479001-61479020 | Msa0861950:intron | 20.0% |
| !! | AACTTACAATCTAAACAAAT+AGG | + | chr5_4:61479184-61479203 | Msa0861950:intron | 20.0% |
| !! | ACTTACAATCTAAACAAATA+GGG | + | chr5_4:61479185-61479204 | Msa0861950:intron | 20.0% |
| !!! | GAATTAGTTTTCATATTACT+TGG | - | chr5_4:61479238-61479257 | None:intergenic | 20.0% |
| !! | CTAATATAGAAACTAAACTT+AGG | + | chr5_4:61479279-61479298 | Msa0861950:intron | 20.0% |
| !!! | TTAATGCAAGATATCTTTTT+GGG | - | chr5_4:61479451-61479470 | None:intergenic | 20.0% |
| !!! | ATTAATGCAAGATATCTTTT+TGG | - | chr5_4:61479452-61479471 | None:intergenic | 20.0% |
| !!! | TTAATTAAGTTTTTCTACAG+TGG | - | chr5_4:61479839-61479858 | None:intergenic | 20.0% |
| !!! | TTGTAGCTCATATTTTTTTT+TGG | + | chr5_4:61479870-61479889 | Msa0861950:intron | 20.0% |
| !!! | TTTATTTTATTTATTGCGAC+AGG | + | chr5_4:61479936-61479955 | Msa0861950:intron | 20.0% |
| !! | GAACAATCTTAAATTCAAAT+AGG | - | chr5_4:61480083-61480102 | None:intergenic | 20.0% |
| !! | ATTTAATGTGACTTCATATT+TGG | + | chr5_4:61480129-61480148 | Msa0861950:intron | 20.0% |
| !!! | TATTTCTATGATGTACTATA+AGG | + | chr5_4:61480778-61480797 | Msa0861950:intron | 20.0% |
| !! | ATTTCTATGATGTACTATAA+GGG | + | chr5_4:61480779-61480798 | Msa0861950:intron | 20.0% |
| !! | CTATACAAATATTTATCAAG+TGG | - | chr5_4:61481294-61481313 | None:intergenic | 20.0% |
| !! | CACTTGATAAATATTTGTAT+AGG | + | chr5_4:61481292-61481311 | Msa0861950:intron | 20.0% |
| !!! | TTTATTTCTGTTGGTTTAGT+TGG | + | chr5_4:61477228-61477247 | Msa0861950:intron | 25.0% |
| !!! | TACTTTTTGTTTACATTGCT+TGG | + | chr5_4:61477283-61477302 | Msa0861950:intron | 25.0% |
| !!! | ATCCTTTTGATTAATTTCAG+AGG | + | chr5_4:61477388-61477407 | Msa0861950:intron | 25.0% |
| !!! | AACCTCTGAAATTAATCAAA+AGG | - | chr5_4:61477393-61477412 | None:intergenic | 25.0% |
| !!! | TTAACCTTTTAGAGTTGATT+TGG | + | chr5_4:61477695-61477714 | Msa0861950:intron | 25.0% |
| !!! | TAACCTTTTAGAGTTGATTT+GGG | + | chr5_4:61477696-61477715 | Msa0861950:intron | 25.0% |
| ! | TACTACAGAAGTTAAATAAC+AGG | - | chr5_4:61477962-61477981 | None:intergenic | 25.0% |
| !!! | TACTTGAAAGTTGTTTTCAT+AGG | + | chr5_4:61477992-61478011 | Msa0861950:intron | 25.0% |
| ! | AGAAATATCTTGAAGTTTGT+TGG | - | chr5_4:61478109-61478128 | None:intergenic | 25.0% |
| ! | TCAAGATATTTCTCGTTAAA+AGG | + | chr5_4:61478116-61478135 | Msa0861950:five_prime_UTR | 25.0% |
| ! | ATTCCATATACTTCCATTAT+TGG | + | chr5_4:61478240-61478259 | Msa0861950:CDS | 25.0% |
| ! | AGTAGTAATCACATATAATG+AGG | + | chr5_4:61478838-61478857 | Msa0861950:intron | 25.0% |
| !!! | TGAGTTTTAGATAAATTAGG+GGG | + | chr5_4:61478885-61478904 | Msa0861950:intron | 25.0% |
| ! | GACGTTTAAAAAAAAAGAGT+CGG | - | chr5_4:61478965-61478984 | None:intergenic | 25.0% |
| ! | GTAATTGTTAATATTACACG+GGG | + | chr5_4:61479002-61479021 | Msa0861950:intron | 25.0% |
| ! | ACTGACAGTATCAAATATTA+GGG | - | chr5_4:61479106-61479125 | None:intergenic | 25.0% |
| ! | TTCATGTATTCCTAAAAGTA+GGG | - | chr5_4:61479166-61479185 | None:intergenic | 25.0% |
| ! | TCTAAACAAATAGGGAAATA+AGG | + | chr5_4:61479193-61479212 | Msa0861950:intron | 25.0% |
| !!! | ACTTGTTGTTTTAGAATGAA+AGG | + | chr5_4:61479583-61479602 | Msa0861950:intron | 25.0% |
| ! | TATATCGAAAGCTTAAATAG+TGG | + | chr5_4:61479719-61479738 | Msa0861950:intron | 25.0% |
| ! | TTACTAACAGATAGAAAGTA+TGG | - | chr5_4:61479766-61479785 | None:intergenic | 25.0% |
| !!! | AGCTCTTTATTCTGAAATTT+TGG | + | chr5_4:61480666-61480685 | Msa0861950:intron | 25.0% |
| !!! | AGTAATTTGTTGTTTTCATG+TGG | + | chr5_4:61480802-61480821 | Msa0861950:intron | 25.0% |
| !!! | GTAATTTGTTGTTTTCATGT+GGG | + | chr5_4:61480803-61480822 | Msa0861950:intron | 25.0% |
| !! | AGTAGTATATTTTCTCCATT+TGG | + | chr5_4:61480906-61480925 | Msa0861950:intron | 25.0% |
| ! | ACATCTCAAAAAAAACCAAA+TGG | - | chr5_4:61480924-61480943 | None:intergenic | 25.0% |
| ! | CATCTCAAAAAAACCAAAAA+GGG | - | chr5_4:61481124-61481143 | None:intergenic | 25.0% |
| ! | ACATCTCAAAAAAACCAAAA+AGG | - | chr5_4:61481125-61481144 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTTTTTTGAGATG+TGG | + | chr5_4:61481124-61481143 | Msa0861950:intron | 25.0% |
| ! | TACAAATATTTATCAAGTGG+TGG | - | chr5_4:61481291-61481310 | None:intergenic | 25.0% |
| ! | CCTGTTATATCATTGAATAT+TGG | - | chr5_4:61481492-61481511 | None:intergenic | 25.0% |
| ! | CCAATATTCAATGATATAAC+AGG | + | chr5_4:61481489-61481508 | Msa0861950:intron | 25.0% |
| !! | TGGTTTTCAAAGATTATCAA+AGG | + | chr5_4:61481586-61481605 | Msa0861950:CDS | 25.0% |
| !! | GGTTTTCAAAGATTATCAAA+GGG | + | chr5_4:61481587-61481606 | Msa0861950:CDS | 25.0% |
| ACAAACCGTTAATTACTGAT+TGG | + | chr5_4:61477142-61477161 | Msa0861950:intron | 30.0% | |
| CATTGCTTGGTATATACATT+TGG | + | chr5_4:61477296-61477315 | Msa0861950:intron | 30.0% | |
| !!! | AATGGAATTTTTAGGGTTGT+TGG | + | chr5_4:61477326-61477345 | Msa0861950:intron | 30.0% |
| TGAAATTTCGGTATGTAGAA+AGG | + | chr5_4:61477349-61477368 | Msa0861950:intron | 30.0% | |
| GAAATTTCGGTATGTAGAAA+GGG | + | chr5_4:61477350-61477369 | Msa0861950:intron | 30.0% | |
| !!! | TAGAAGGTTTGGATTTTTTC+TGG | + | chr5_4:61477665-61477684 | Msa0861950:intron | 30.0% |
| !!! | AGAAGGTTTGGATTTTTTCT+GGG | + | chr5_4:61477666-61477685 | Msa0861950:intron | 30.0% |
| AATCCCAAATCAACTCTAAA+AGG | - | chr5_4:61477702-61477721 | None:intergenic | 30.0% | |
| !! | TTTAGAGTTGATTTGGGATT+AGG | + | chr5_4:61477702-61477721 | Msa0861950:intron | 30.0% |
| GAAGAAAACAAAAGAAATGC+AGG | - | chr5_4:61477831-61477850 | None:intergenic | 30.0% | |
| ATGTCAATTGTGTGACAAAT+AGG | - | chr5_4:61477911-61477930 | None:intergenic | 30.0% | |
| ATTCATATATAACAGGTGAG+TGG | + | chr5_4:61478066-61478085 | Msa0861950:intron | 30.0% | |
| AAATGAAAAAACTCACTCAC+CGG | - | chr5_4:61478534-61478553 | None:intergenic | 30.0% | |
| AACAACTATGTCTTTGTACT+TGG | + | chr5_4:61478652-61478671 | Msa0861950:CDS | 30.0% | |
| AGTAATCACATATAATGAGG+AGG | + | chr5_4:61478841-61478860 | Msa0861950:intron | 30.0% | |
| GTAATCACATATAATGAGGA+GGG | + | chr5_4:61478842-61478861 | Msa0861950:intron | 30.0% | |
| TAATCACATATAATGAGGAG+GGG | + | chr5_4:61478843-61478862 | Msa0861950:intron | 30.0% | |
| !!! | GAGTTTTAGATAAATTAGGG+GGG | + | chr5_4:61478886-61478905 | Msa0861950:intron | 30.0% |
| CTGACAGTATCAAATATTAG+GGG | - | chr5_4:61479105-61479124 | None:intergenic | 30.0% | |
| GACTGACAGTATCAAATATT+AGG | - | chr5_4:61479107-61479126 | None:intergenic | 30.0% | |
| TCATGTATTCCTAAAAGTAG+GGG | - | chr5_4:61479165-61479184 | None:intergenic | 30.0% | |
| GTTCATGTATTCCTAAAAGT+AGG | - | chr5_4:61479167-61479186 | None:intergenic | 30.0% | |
| AATAGGGAAATAAGGAAATG+AGG | + | chr5_4:61479201-61479220 | Msa0861950:intron | 30.0% | |
| TGCAAAACAATCGACTAATA+AGG | + | chr5_4:61479483-61479502 | Msa0861950:intron | 30.0% | |
| TGGTTCACATTATATTAGTC+TGG | - | chr5_4:61479527-61479546 | None:intergenic | 30.0% | |
| ATTTCATTCATCACACATTC+TGG | - | chr5_4:61479557-61479576 | None:intergenic | 30.0% | |
| GAATGTGTGATGAATGAAAT+TGG | + | chr5_4:61479557-61479576 | Msa0861950:intron | 30.0% | |
| !! | TCATCAGTTTTTCAGTATAC+TGG | + | chr5_4:61479609-61479628 | Msa0861950:intron | 30.0% |
| ! | TATTCCTATGCACGATTTTA+AGG | + | chr5_4:61479693-61479712 | Msa0861950:intron | 30.0% |
| !!! | TTGGAAACACTTTTTTCATC+TGG | + | chr5_4:61479889-61479908 | Msa0861950:intron | 30.0% |
| ACATTAAATCATCTCCAGAT+GGG | - | chr5_4:61480118-61480137 | None:intergenic | 30.0% | |
| TCAAAAGCTTATCTCATCAA+TGG | + | chr5_4:61480394-61480413 | Msa0861950:CDS | 30.0% | |
| CAAAAGCTTATCTCATCAAT+GGG | + | chr5_4:61480395-61480414 | Msa0861950:CDS | 30.0% | |
| AAAAGCTTATCTCATCAATG+GGG | + | chr5_4:61480396-61480415 | Msa0861950:CDS | 30.0% | |
| AATTCTTAAACTCAGTGTGT+TGG | - | chr5_4:61480615-61480634 | None:intergenic | 30.0% | |
| CAAGATCACCTAAAATTTGT+AGG | - | chr5_4:61480848-61480867 | None:intergenic | 30.0% | |
| !! | CTACAAATTTTAGGTGATCT+TGG | + | chr5_4:61480846-61480865 | Msa0861950:intron | 30.0% |
| !!! | TTGGTTTTTTTTGAGATGTG+AGG | + | chr5_4:61480925-61480944 | Msa0861950:intron | 30.0% |
| !!! | TGGTTTTTTTTGAGATGTGA+GGG | + | chr5_4:61480926-61480945 | Msa0861950:intron | 30.0% |
| TACAATACACCAAAAATGGT+GGG | + | chr5_4:61481050-61481069 | Msa0861950:intron | 30.0% | |
| TAGGAGTGAATCTTGAATAT+TGG | + | chr5_4:61481147-61481166 | Msa0861950:intron | 30.0% | |
| ! | AATATTGGATTTTACCTGCA+TGG | + | chr5_4:61481162-61481181 | Msa0861950:intron | 30.0% |
| GAACTATGTGTATGTATGTA+TGG | - | chr5_4:61481252-61481271 | None:intergenic | 30.0% | |
| GACTATACTTAAGTCAAATG+TGG | + | chr5_4:61481321-61481340 | Msa0861950:intron | 30.0% | |
| GTAATCTCTTCTGTAATTTC+TGG | + | chr5_4:61481428-61481447 | Msa0861950:intron | 30.0% | |
| TGTCAGTTATGAACTTGATT+TGG | + | chr5_4:61481566-61481585 | Msa0861950:CDS | 30.0% | |
| TGTGAAAACCCTAAATCGAT+GGG | - | chr5_4:61476876-61476895 | None:intergenic | 35.0% | |
| ATGTGAAAACCCTAAATCGA+TGG | - | chr5_4:61476877-61476896 | None:intergenic | 35.0% | |
| GAGAAAAACGGAATCGTTTA+AGG | - | chr5_4:61476956-61476975 | None:intergenic | 35.0% | |
| AAAAATCACTCGTATCGAGA+CGG | - | chr5_4:61477188-61477207 | None:intergenic | 35.0% | |
| !! | ATTTCTGTTGGTTTAGTTGG+TGG | + | chr5_4:61477231-61477250 | Msa0861950:intron | 35.0% |
| ! | TAGGGTTGTTGGTGAAATTT+CGG | + | chr5_4:61477337-61477356 | Msa0861950:intron | 35.0% |
| !! | TTACAGAGGTTTAAGTTGAG+AGG | + | chr5_4:61477569-61477588 | Msa0861950:intron | 35.0% |
| !! | GTATCTTTGTTTGGTGTAGA+AGG | + | chr5_4:61477649-61477668 | Msa0861950:intron | 35.0% |
| !! | TTTGTTTGGTGTAGAAGGTT+TGG | + | chr5_4:61477654-61477673 | Msa0861950:intron | 35.0% |
| TGAGATGTTCCTTGCAAAAA+AGG | - | chr5_4:61477797-61477816 | None:intergenic | 35.0% | |
| ! | AATCAAGTTGTGTTCATCTC+TGG | + | chr5_4:61478016-61478035 | Msa0861950:intron | 35.0% |
| ATTCAAATCATACCAGAACC+AGG | + | chr5_4:61478176-61478195 | Msa0861950:CDS | 35.0% | |
| ! | TGGAAGTATATGGAATCAGA+GGG | - | chr5_4:61478236-61478255 | None:intergenic | 35.0% |
| ! | ATGGAAGTATATGGAATCAG+AGG | - | chr5_4:61478237-61478256 | None:intergenic | 35.0% |
| ! | CCACCAATAATGGAAGTATA+TGG | - | chr5_4:61478246-61478265 | None:intergenic | 35.0% |
| CCATATACTTCCATTATTGG+TGG | + | chr5_4:61478243-61478262 | Msa0861950:CDS | 35.0% | |
| AGCAAAAATGCCACCAATAA+TGG | - | chr5_4:61478256-61478275 | None:intergenic | 35.0% | |
| AACGTATTGAGTGGAATAAC+CGG | + | chr5_4:61478512-61478531 | Msa0861950:CDS | 35.0% | |
| CTCGCTATCAGAATATAGAT+TGG | - | chr5_4:61478687-61478706 | None:intergenic | 35.0% | |
| CTTGCAAAGAGGTAAAGAAA+AGG | - | chr5_4:61478799-61478818 | None:intergenic | 35.0% | |
| TTAATATTACACGGGGAGTT+GGG | + | chr5_4:61479009-61479028 | Msa0861950:intron | 35.0% | |
| AATATTAGGGGACGTAAACT+TGG | - | chr5_4:61479093-61479112 | None:intergenic | 35.0% | |
| ! | AGCTTAGTAAGCTTTAGCTT+GGG | - | chr5_4:61479369-61479388 | None:intergenic | 35.0% |
| ! | AAGCTTAGTAAGCTTTAGCT+TGG | - | chr5_4:61479370-61479389 | None:intergenic | 35.0% |
| TCACACATTCTGGATTCATA+TGG | - | chr5_4:61479547-61479566 | None:intergenic | 35.0% | |
| ATGACCTTAAAATCGTGCAT+AGG | - | chr5_4:61479700-61479719 | None:intergenic | 35.0% | |
| ! | TGGCTCTATTAGCAAAATGA+AGG | - | chr5_4:61479819-61479838 | None:intergenic | 35.0% |
| AAAACCAAAATATCATCCCC+AGG | - | chr5_4:61479987-61480006 | None:intergenic | 35.0% | |
| !!! | TTTTGGTTTTTTCCTGCTCT+TGG | + | chr5_4:61479997-61480016 | Msa0861950:CDS | 35.0% |
| ! | TTGGTGGATATGAGTATGTA+AGG | + | chr5_4:61480016-61480035 | Msa0861950:intron | 35.0% |
| CACATTAAATCATCTCCAGA+TGG | - | chr5_4:61480119-61480138 | None:intergenic | 35.0% | |
| ! | TGTGACTTCATATTTGGTTC+AGG | + | chr5_4:61480135-61480154 | Msa0861950:intron | 35.0% |
| TTCTCCACTCAACATTGAAT+AGG | - | chr5_4:61480194-61480213 | None:intergenic | 35.0% | |
| TATTCAATGTTGAGTGGAGA+AGG | + | chr5_4:61480193-61480212 | Msa0861950:CDS | 35.0% | |
| ATTCAATGTTGAGTGGAGAA+GGG | + | chr5_4:61480194-61480213 | Msa0861950:CDS | 35.0% | |
| ! | TACCATCTCAAATTGATTCC+AGG | - | chr5_4:61480262-61480281 | None:intergenic | 35.0% |
| ! | TTTTCGTCTTTTGTTCGTGA+AGG | + | chr5_4:61480344-61480363 | Msa0861950:intron | 35.0% |
| TTGATGTAGCTGGAATGAAA+AGG | + | chr5_4:61480371-61480390 | Msa0861950:CDS | 35.0% | |
| TGCTTACCGAAATTATTTGC+AGG | + | chr5_4:61480520-61480539 | Msa0861950:intron | 35.0% | |
| TGGCAACCTGCAAATAATTT+CGG | - | chr5_4:61480529-61480548 | None:intergenic | 35.0% | |
| !! | GTACACGAACAAAAGTATTC+TGG | - | chr5_4:61480549-61480568 | None:intergenic | 35.0% |
| TAAGAATTGTCTTGTGTCTC+TGG | + | chr5_4:61480627-61480646 | Msa0861950:intron | 35.0% | |
| GTGATCTTGCAGGAAAAAAA+TGG | - | chr5_4:61480746-61480765 | None:intergenic | 35.0% | |
| ! | TTTTCATGTGGGAAAGAAAG+TGG | + | chr5_4:61480814-61480833 | Msa0861950:intron | 35.0% |
| TTTCATGTGGGAAAGAAAGT+GGG | + | chr5_4:61480815-61480834 | Msa0861950:intron | 35.0% | |
| ! | GATCTTGGCCTACAAATTTT+AGG | + | chr5_4:61480837-61480856 | Msa0861950:intron | 35.0% |
| !!! | GGTTTTTTTTGAGATGTGAG+GGG | + | chr5_4:61480927-61480946 | Msa0861950:intron | 35.0% |
| ACAACCTCTTGTGTAAAAAC+AGG | + | chr5_4:61481016-61481035 | Msa0861950:intron | 35.0% | |
| CAACCTCTTGTGTAAAAACA+GGG | + | chr5_4:61481017-61481036 | Msa0861950:intron | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr5_4:61481023-61481042 | None:intergenic | 35.0% |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr5_4:61481022-61481041 | Msa0861950:intron | 35.0% | |
| TGCGTACAATACACCAAAAA+TGG | + | chr5_4:61481046-61481065 | Msa0861950:intron | 35.0% | |
| GTACAATACACCAAAAATGG+TGG | + | chr5_4:61481049-61481068 | Msa0861950:intron | 35.0% | |
| !!! | TGGTTTTTTTGAGATGTGGT+AGG | + | chr5_4:61481128-61481147 | Msa0861950:intron | 35.0% |
| !! | CATGGATTAGTGATTTCACA+TGG | + | chr5_4:61481180-61481199 | Msa0861950:intron | 35.0% |
| !! | TCACATGGATTAGAGATTAG+TGG | + | chr5_4:61481195-61481214 | Msa0861950:intron | 35.0% |
| TGTAGACTTGTACTGTTGTT+TGG | + | chr5_4:61481375-61481394 | Msa0861950:intron | 35.0% | |
| ! | GTAGACTTGTACTGTTGTTT+GGG | + | chr5_4:61481376-61481395 | Msa0861950:intron | 35.0% |
| AAATCTGCATGGTAAATCTG+AGG | + | chr5_4:61481458-61481477 | Msa0861950:intron | 35.0% | |
| AATCTGCATGGTAAATCTGA+GGG | + | chr5_4:61481459-61481478 | Msa0861950:intron | 35.0% | |
| TAATGAAGACATTAGCGAAG+AGG | + | chr5_4:61481611-61481630 | Msa0861950:CDS | 35.0% | |
| TATAGGTTATGCTGATGTTC+AGG | + | chr5_4:61481660-61481679 | Msa0861950:three_prime_UTR | 35.0% | |
| !! | CATCTATGTTTTTACCCAGA+GGG | - | chr5_4:61481708-61481727 | None:intergenic | 35.0% |
| !! | TCATCTATGTTTTTACCCAG+AGG | - | chr5_4:61481709-61481728 | None:intergenic | 35.0% |
| AGAGCAGAAAAGAACATGTT+TGG | + | chr5_4:61481749-61481768 | Msa0861950:three_prime_UTR | 35.0% | |
| GAACATGTTTGGATCAATTG+TGG | + | chr5_4:61481760-61481779 | Msa0861950:three_prime_UTR | 35.0% | |
| AACCCTAAATCGATGGGATT+GGG | - | chr5_4:61476870-61476889 | None:intergenic | 40.0% | |
| AAACCCTAAATCGATGGGAT+TGG | - | chr5_4:61476871-61476890 | None:intergenic | 40.0% | |
| TGAGAGTAGTGAGAAGATGA+AGG | - | chr5_4:61476931-61476950 | None:intergenic | 40.0% | |
| TATTGTGTCAGTGTCATGTC+CGG | - | chr5_4:61477448-61477467 | None:intergenic | 40.0% | |
| !! | AGAGGTTTAAGTTGAGAGGA+AGG | + | chr5_4:61477573-61477592 | Msa0861950:intron | 40.0% |
| !! | GTTTAAGTTGAGAGGAAGGA+AGG | + | chr5_4:61477577-61477596 | Msa0861950:intron | 40.0% |
| !! | GAAGGAAGGAGTGTTGTAAT+GGG | + | chr5_4:61477591-61477610 | Msa0861950:intron | 40.0% |
| GGGATTAGGATCACTTTCAA+TGG | + | chr5_4:61477716-61477735 | Msa0861950:intron | 40.0% | |
| CCTTGCAAAAAAGGACATCA+TGG | - | chr5_4:61477788-61477807 | None:intergenic | 40.0% | |
| !!! | CCATGATGTCCTTTTTTGCA+AGG | + | chr5_4:61477785-61477804 | Msa0861950:intron | 40.0% |
| ATAACAGGTGAGTGGAGAAA+AGG | + | chr5_4:61478074-61478093 | Msa0861950:intron | 40.0% | |
| AAAGGATAGTGTCGCAATGT+TGG | + | chr5_4:61478134-61478153 | Msa0861950:exon | 40.0% | |
| ! | CAAACAAATTAGCCTGGTTC+TGG | - | chr5_4:61478191-61478210 | None:intergenic | 40.0% |
| CCTTCACAAACAAATTAGCC+TGG | - | chr5_4:61478197-61478216 | None:intergenic | 40.0% | |
| !! | CCAGGCTAATTTGTTTGTGA+AGG | + | chr5_4:61478194-61478213 | Msa0861950:CDS | 40.0% |
| ! | TGGCATTTTTGCTTGCAAGA+TGG | + | chr5_4:61478263-61478282 | Msa0861950:CDS | 40.0% |
| GGCTGGAATAGCTCTTAAAA+TGG | - | chr5_4:61478480-61478499 | None:intergenic | 40.0% | |
| CAATACGTTGGATTCTAGTG+AGG | - | chr5_4:61478501-61478520 | None:intergenic | 40.0% | |
| CTAGAATCCAACGTATTGAG+TGG | + | chr5_4:61478503-61478522 | Msa0861950:CDS | 40.0% | |
| GGTTATTCCACTCAATACGT+TGG | - | chr5_4:61478513-61478532 | None:intergenic | 40.0% | |
| CAGCTGAACTTCTTACAGAA+CGG | + | chr5_4:61478708-61478727 | Msa0861950:CDS | 40.0% | |
| CAAAATCGAGTCTTGCAAAG+AGG | - | chr5_4:61478810-61478829 | None:intergenic | 40.0% | |
| GTTAATATTACACGGGGAGT+TGG | + | chr5_4:61479008-61479027 | Msa0861950:intron | 40.0% | |
| ! | TAAACTTGGTTTGATGGCTG+GGG | - | chr5_4:61479079-61479098 | None:intergenic | 40.0% |
| ! | GTAAACTTGGTTTGATGGCT+GGG | - | chr5_4:61479080-61479099 | None:intergenic | 40.0% |
| !! | TTAGTAAGCTTTAGCTTGGG+GGG | - | chr5_4:61479366-61479385 | None:intergenic | 40.0% |
| !! | CTTAGTAAGCTTTAGCTTGG+GGG | - | chr5_4:61479367-61479386 | None:intergenic | 40.0% |
| !! | GCTTAGTAAGCTTTAGCTTG+GGG | - | chr5_4:61479368-61479387 | None:intergenic | 40.0% |
| TTATTGCGACAGGTTTCTGT+TGG | + | chr5_4:61479946-61479965 | Msa0861950:intron | 40.0% | |
| ! | GGTTTCTGTTGGTTACTTCA+TGG | + | chr5_4:61479957-61479976 | Msa0861950:intron | 40.0% |
| GTAGCCTATTCAATGTTGAG+TGG | + | chr5_4:61480187-61480206 | Msa0861950:CDS | 40.0% | |
| CTCCTGGAATCAATTTGAGA+TGG | + | chr5_4:61480257-61480276 | Msa0861950:CDS | 40.0% | |
| !! | TGAAGGTATCTTGATGTAGC+TGG | + | chr5_4:61480361-61480380 | Msa0861950:intron | 40.0% |
| GGGTTGTGATATTCATTGCT+TGG | + | chr5_4:61480416-61480435 | Msa0861950:CDS | 40.0% | |
| TGTGATATTCATTGCTTGGC+TGG | + | chr5_4:61480420-61480439 | Msa0861950:CDS | 40.0% | |
| ATATTCATTGCTTGGCTGGT+AGG | + | chr5_4:61480424-61480443 | Msa0861950:intron | 40.0% | |
| TGCTTACTTGCACTTTGATC+AGG | + | chr5_4:61480580-61480599 | Msa0861950:CDS | 40.0% | |
| TGTTGAGAAAGTGATCTTGC+AGG | - | chr5_4:61480756-61480775 | None:intergenic | 40.0% | |
| ! | GATCTTGGCCTACAAGTTTT+AGG | + | chr5_4:61480861-61480880 | Msa0861950:intron | 40.0% |
| CCTTTGCACCTAAAACTTGT+AGG | - | chr5_4:61480872-61480891 | None:intergenic | 40.0% | |
| !!! | CCTACAAGTTTTAGGTGCAA+AGG | + | chr5_4:61480869-61480888 | Msa0861950:intron | 40.0% |
| GTTGTTGTCATGTGACTGTA+AGG | + | chr5_4:61480972-61480991 | Msa0861950:intron | 40.0% | |
| ! | TTACACAAGAGGTTGTTTCC+AGG | - | chr5_4:61481012-61481031 | None:intergenic | 40.0% |
| AAAAACCAAAAAGGGCAACC+CGG | - | chr5_4:61481116-61481135 | None:intergenic | 40.0% | |
| GTGAAATCACTAATCCATGC+AGG | - | chr5_4:61481179-61481198 | None:intergenic | 40.0% | |
| ATTTATCAAGTGGTGGTCAG+AGG | - | chr5_4:61481284-61481303 | None:intergenic | 40.0% | |
| ACAACTAGTGTTTGCCCAAA+GGG | - | chr5_4:61481529-61481548 | None:intergenic | 40.0% | |
| AACAACTAGTGTTTGCCCAA+AGG | - | chr5_4:61481530-61481549 | None:intergenic | 40.0% | |
| ! | ACTAGTTGTTGTTGTACCAG+TGG | + | chr5_4:61481540-61481559 | Msa0861950:CDS | 40.0% |
| !! | ATGTTTTTACCCAGAGGGAA+AGG | - | chr5_4:61481703-61481722 | None:intergenic | 40.0% |
| TCACATATCCTCACTGCGAT+CGG | + | chr5_4:61476891-61476910 | Msa0861950:five_prime_UTR | 45.0% | |
| !! | TGGTTTAGTTGGTGGATCTG+TGG | + | chr5_4:61477239-61477258 | Msa0861950:intron | 45.0% |
| CGTCTGTGTCAATGCTACAT+AGG | - | chr5_4:61477420-61477439 | None:intergenic | 45.0% | |
| !! | TGCAAGTGTTGGTGTTACAG+AGG | + | chr5_4:61477555-61477574 | Msa0861950:intron | 45.0% |
| !! | GGAAGGAAGGAGTGTTGTAA+TGG | + | chr5_4:61477590-61477609 | Msa0861950:intron | 45.0% |
| TTAAGAGCAGCGTGATAAGG+AGG | - | chr5_4:61479048-61479067 | None:intergenic | 45.0% | |
| GAGTTAAGAGCAGCGTGATA+AGG | - | chr5_4:61479051-61479070 | None:intergenic | 45.0% | |
| ! | CGTAAACTTGGTTTGATGGC+TGG | - | chr5_4:61479081-61479100 | None:intergenic | 45.0% |
| ! | GGGACGTAAACTTGGTTTGA+TGG | - | chr5_4:61479085-61479104 | None:intergenic | 45.0% |
| ! | TGTCAGTCAAGTCACTGACT+TGG | + | chr5_4:61479119-61479138 | Msa0861950:intron | 45.0% |
| !! | ACACACTAGCCCCTACTTTT+AGG | + | chr5_4:61479153-61479172 | Msa0861950:intron | 45.0% |
| !! | TAGTAAGCTTTAGCTTGGGG+GGG | - | chr5_4:61479365-61479384 | None:intergenic | 45.0% |
| ! | CTGACCTGGGGATGATATTT+TGG | + | chr5_4:61479980-61479999 | Msa0861950:CDS | 45.0% |
| !!! | TGGTTTTTTCCTGCTCTTGG+TGG | + | chr5_4:61480000-61480019 | Msa0861950:CDS | 45.0% |
| TACTCATATCCACCAAGAGC+AGG | - | chr5_4:61480012-61480031 | None:intergenic | 45.0% | |
| ! | TCACTTGATAGCAACCCATC+TGG | + | chr5_4:61480101-61480120 | Msa0861950:intron | 45.0% |
| !! | ATCTCTGAGACAACAACTCC+TGG | + | chr5_4:61480241-61480260 | Msa0861950:CDS | 45.0% |
| TGGGAAAGAAAGTGGGATCT+TGG | + | chr5_4:61480822-61480841 | Msa0861950:intron | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | + | chr5_4:61480978-61480997 | Msa0861950:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | + | chr5_4:61480979-61480998 | Msa0861950:intron | 45.0% | |
| CTGGTCAAGCAAAATCTGCA+TGG | + | chr5_4:61481447-61481466 | Msa0861950:intron | 45.0% | |
| CAACTAGTGTTTGCCCAAAG+GGG | - | chr5_4:61481528-61481547 | None:intergenic | 45.0% | |
| TTCATAACTGACAGCACCAC+TGG | - | chr5_4:61481559-61481578 | None:intergenic | 45.0% | |
| !!! | TTAGATTTTTTTTTTTTTTT+TGG | - | chr5_4:61478408-61478427 | None:intergenic | 5.0% |
| !! | TGTAGCATTGACACAGACGC+CGG | + | chr5_4:61477421-61477440 | Msa0861950:intron | 50.0% |
| AGTGTGACACTGACACGTGT+TGG | + | chr5_4:61477510-61477529 | Msa0861950:intron | 50.0% | |
| TCCTCTGCAAGTGCAAGTGT+TGG | + | chr5_4:61477544-61477563 | Msa0861950:intron | 50.0% | |
| ACCAACACTTGCACTTGCAG+AGG | - | chr5_4:61477548-61477567 | None:intergenic | 50.0% | |
| TTCATCTCTGGCTGACATCG+AGG | + | chr5_4:61478028-61478047 | Msa0861950:intron | 50.0% | |
| GCTGAGTAAGATCGTAGACC+TGG | - | chr5_4:61478444-61478463 | None:intergenic | 50.0% | |
| ACGTTGGATTCTAGTGAGGC+TGG | - | chr5_4:61478497-61478516 | None:intergenic | 50.0% | |
| TGCGTTGTCTACGTTTGCTC+TGG | + | chr5_4:61478736-61478755 | Msa0861950:CDS | 50.0% | |
| GCGTTGTCTACGTTTGCTCT+GGG | + | chr5_4:61478737-61478756 | Msa0861950:CDS | 50.0% | |
| CGTTGTCTACGTTTGCTCTG+GGG | + | chr5_4:61478738-61478757 | Msa0861950:CDS | 50.0% | |
| GTTGTCTACGTTTGCTCTGG+GGG | + | chr5_4:61478739-61478758 | Msa0861950:CDS | 50.0% | |
| !! | GTTTGCTCTGGGGGTAAGAA+TGG | + | chr5_4:61478748-61478767 | Msa0861950:intron | 50.0% |
| TCTGGGGGTAAGAATGGTCT+TGG | + | chr5_4:61478754-61478773 | Msa0861950:intron | 50.0% | |
| TGGTTACTTCATGGCTGACC+TGG | + | chr5_4:61479966-61479985 | Msa0861950:CDS | 50.0% | |
| GGTTACTTCATGGCTGACCT+GGG | + | chr5_4:61479967-61479986 | Msa0861950:CDS | 50.0% | |
| GTTACTTCATGGCTGACCTG+GGG | + | chr5_4:61479968-61479987 | Msa0861950:CDS | 50.0% | |
| AGGGCAGCTGTACACATACA+TGG | + | chr5_4:61480213-61480232 | Msa0861950:CDS | 50.0% | |
| GAGTTCTCATTCTTCCCCTC+TGG | + | chr5_4:61480493-61480512 | Msa0861950:intron | 50.0% | |
| TTCGGTAAGCATGTGCCAGA+GGG | - | chr5_4:61480511-61480530 | None:intergenic | 50.0% | |
| TTTCGGTAAGCATGTGCCAG+AGG | - | chr5_4:61480512-61480531 | None:intergenic | 50.0% | |
| TGAGATGTGAGGGGTAACCT+TGG | + | chr5_4:61480936-61480955 | Msa0861950:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr5_4:61480956-61480975 | None:intergenic | 50.0% | |
| TTCAGCAGATGCACCCCTTT+GGG | + | chr5_4:61481512-61481531 | Msa0861950:CDS | 50.0% | |
| AGGGAAAGGACACAGAGACA+AGG | - | chr5_4:61481689-61481708 | None:intergenic | 50.0% | |
| TCTCTGTGTCCTTTCCCTCT+GGG | + | chr5_4:61481691-61481710 | Msa0861950:three_prime_UTR | 50.0% | |
| CACTCGTATCGAGACGGTAC+AGG | - | chr5_4:61477182-61477201 | None:intergenic | 55.0% | |
| !! | GTAGCATTGACACAGACGCC+GGG | + | chr5_4:61477422-61477441 | Msa0861950:intron | 55.0% |
| CACTGACACGTGTTGGACAC+CGG | + | chr5_4:61477517-61477536 | Msa0861950:intron | 55.0% | |
| !! | TGCACTTGCAGAGGAGTGTC+CGG | - | chr5_4:61477539-61477558 | None:intergenic | 55.0% |
| CAGCGTGATAAGGAGGTCGA+GGG | - | chr5_4:61479041-61479060 | None:intergenic | 55.0% | |
| ! | ACTTGGTTTGATGGCTGGGG+TGG | - | chr5_4:61479076-61479095 | None:intergenic | 55.0% |
| TCGGTAAGCATGTGCCAGAG+GGG | - | chr5_4:61480510-61480529 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr5_4:61480991-61481010 | Msa0861950:intron | 55.0% | |
| ! | GGAAGGGGTCCCACCATTTT+TGG | - | chr5_4:61481062-61481081 | None:intergenic | 55.0% |
| ! | AAAATGGTGGGACCCCTTCC+CGG | + | chr5_4:61481062-61481081 | Msa0861950:intron | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr5_4:61481089-61481108 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr5_4:61481090-61481109 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr5_4:61481094-61481113 | Msa0861950:intron | 55.0% |
| GTTCAGCAGATGCACCCCTT+TGG | + | chr5_4:61481511-61481530 | Msa0861950:CDS | 55.0% | |
| GTCTCTGTGTCCTTTCCCTC+TGG | + | chr5_4:61481690-61481709 | Msa0861950:three_prime_UTR | 55.0% | |
| ! | GAAACGCACCGATCGCAGTG+AGG | - | chr5_4:61476902-61476921 | None:intergenic | 60.0% |
| TGTCAGTGTCATGTCCGGCC+CGG | - | chr5_4:61477443-61477462 | None:intergenic | 60.0% | |
| GCAGCGTGATAAGGAGGTCG+AGG | - | chr5_4:61479042-61479061 | None:intergenic | 60.0% | |
| ! | TGGTTTGATGGCTGGGGTGG+AGG | - | chr5_4:61479073-61479092 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr5_4:61480945-61480964 | Msa0861950:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr5_4:61481095-61481114 | Msa0861950:intron | 60.0% |
| ! | GTGCACCGGGTTGCCCTTTT+TGG | + | chr5_4:61481108-61481127 | Msa0861950:intron | 60.0% |
| CATTGACACAGACGCCGGGC+CGG | + | chr5_4:61477426-61477445 | Msa0861950:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr5_4:61481077-61481096 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr5_4:61481078-61481097 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr5_4:61481077-61481096 | Msa0861950:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr5_4:61481078-61481097 | Msa0861950:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr5_4:61481079-61481098 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr5_4:61481083-61481102 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr5_4:61481084-61481103 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 61476866 | 61481905 | 61476866 | ID=Msa0861950;Name=Msa0861950 |
| chr5_4 | mRNA | 61476866 | 61481905 | 61476866 | ID=Msa0861950-mRNA-1;Parent=Msa0861950;Name=Msa0861950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=116|1|1|1|0.75|0.66|9|266|274 |
| chr5_4 | exon | 61476866 | 61476912 | 61476866 | ID=Msa0861950-mRNA-1:exon:19077;Parent=Msa0861950-mRNA-1 |
| chr5_4 | exon | 61478081 | 61478284 | 61478081 | ID=Msa0861950-mRNA-1:exon:19078;Parent=Msa0861950-mRNA-1 |
| chr5_4 | exon | 61478445 | 61478533 | 61478445 | ID=Msa0861950-mRNA-1:exon:19079;Parent=Msa0861950-mRNA-1 |
| chr5_4 | exon | 61478622 | 61478760 | 61478622 | ID=Msa0861950-mRNA-1:exon:19080;Parent=Msa0861950-mRNA-1 |
| chr5_4 | exon | 61479958 | 61480032 | 61479958 | ID=Msa0861950-mRNA-1:exon:19081;Parent=Msa0861950-mRNA-1 |
| chr5_4 | exon | 61480157 | 61480278 | 61480157 | ID=Msa0861950-mRNA-1:exon:19082;Parent=Msa0861950-mRNA-1 |
| chr5_4 | exon | 61480366 | 61480441 | 61480366 | ID=Msa0861950-mRNA-1:exon:19083;Parent=Msa0861950-mRNA-1 |
| chr5_4 | exon | 61480542 | 61480601 | 61480542 | ID=Msa0861950-mRNA-1:exon:19084;Parent=Msa0861950-mRNA-1 |
| chr5_4 | exon | 61481511 | 61481905 | 61481511 | ID=Msa0861950-mRNA-1:exon:19085;Parent=Msa0861950-mRNA-1 |
| chr5_4 | five_prime_UTR | 61476866 | 61476912 | 61476866 | ID=Msa0861950-mRNA-1:five_prime_utr;Parent=Msa0861950-mRNA-1 |
| chr5_4 | five_prime_UTR | 61478081 | 61478149 | 61478081 | ID=Msa0861950-mRNA-1:five_prime_utr;Parent=Msa0861950-mRNA-1 |
| chr5_4 | CDS | 61478150 | 61478284 | 61478150 | ID=Msa0861950-mRNA-1:cds;Parent=Msa0861950-mRNA-1 |
| chr5_4 | CDS | 61478445 | 61478533 | 61478445 | ID=Msa0861950-mRNA-1:cds;Parent=Msa0861950-mRNA-1 |
| chr5_4 | CDS | 61478622 | 61478760 | 61478622 | ID=Msa0861950-mRNA-1:cds;Parent=Msa0861950-mRNA-1 |
| chr5_4 | CDS | 61479958 | 61480032 | 61479958 | ID=Msa0861950-mRNA-1:cds;Parent=Msa0861950-mRNA-1 |
| chr5_4 | CDS | 61480157 | 61480278 | 61480157 | ID=Msa0861950-mRNA-1:cds;Parent=Msa0861950-mRNA-1 |
| chr5_4 | CDS | 61480366 | 61480441 | 61480366 | ID=Msa0861950-mRNA-1:cds;Parent=Msa0861950-mRNA-1 |
| chr5_4 | CDS | 61480542 | 61480601 | 61480542 | ID=Msa0861950-mRNA-1:cds;Parent=Msa0861950-mRNA-1 |
| chr5_4 | CDS | 61481511 | 61481639 | 61481511 | ID=Msa0861950-mRNA-1:cds;Parent=Msa0861950-mRNA-1 |
| chr5_4 | three_prime_UTR | 61481640 | 61481905 | 61481640 | ID=Msa0861950-mRNA-1:three_prime_utr;Parent=Msa0861950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
