AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0863460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0863460 MtrunA17_Chr5g0445101 86.853 1179 100 7 1 1134 1 1169 0.0 2003
Msa0863460 MtrunA17_Chr3g0100331 49.900 499 200 10 15 481 7 487 8.72e-147 473
Msa0863460 MtrunA17_Chr3g0100331 35.961 203 105 9 868 1052 492 687 1.44e-12 72.4
Msa0863460 MtrunA17_Chr8g0336661 40.684 263 115 5 220 446 306 563 8.63e-58 217
Msa0863460 MtrunA17_Chr8g0336661 39.024 164 97 2 61 223 49 210 9.32e-28 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0863460 AT5G55390.3 46.963 428 194 11 23 427 18 435 4.22e-114 385
Msa0863460 AT5G55390.2 46.963 428 194 11 23 427 18 435 4.22e-114 385
Msa0863460 AT5G55390.1 46.963 428 194 11 23 427 18 435 4.22e-114 385
Msa0863460 AT5G48090.1 33.993 303 138 9 175 427 3 293 1.25e-43 170
Msa0863460 AT5G48090.3 36.596 235 107 6 224 427 29 252 4.27e-42 165
Msa0863460 AT5G48090.2 36.596 235 107 6 224 427 29 252 4.27e-42 165

Find 218 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATCTTTCATTTGATTT+TGG 0.177111 5_4:+63204575 None:intergenic
TACCTTGAATTGAAATAATT+AGG 0.180949 5_4:+63210824 None:intergenic
GCCTTCACAAAAGGATTTAT+TGG 0.190363 5_4:-63209743 Msa0863460:CDS
TTGTCTGGGAAGGTGATTTC+TGG 0.206337 5_4:-63204617 Msa0863460:CDS
GTAGGCTTCATCTTCTTATT+AGG 0.208478 5_4:+63205667 None:intergenic
GTAGGCTTCATCTTCTTATT+AGG 0.208478 5_4:+63205904 None:intergenic
AATATTATGGATGGTGATTC+TGG 0.211883 5_4:-63203979 Msa0863460:CDS
AATGCTGTTTGTAGCTCTTA+TGG 0.220957 5_4:-63209772 Msa0863460:intron
CCTGATTGTCGTGCTTTATT+TGG 0.234766 5_4:+63204456 None:intergenic
GTTGATTCTGAAGTTGATTT+TGG 0.247923 5_4:-63206193 Msa0863460:CDS
GCTACTCGTAAATCAAAATT+TGG 0.248096 5_4:-63203709 Msa0863460:CDS
TTATTAGAAGTATTGATTTC+CGG 0.256914 5_4:+63204971 None:intergenic
TTATTAGAAGTATTGATTTC+CGG 0.256914 5_4:+63205208 None:intergenic
TTATTAGAAGTATTGATTTC+CGG 0.256914 5_4:+63205445 None:intergenic
AACTTCTTTGATTTGATTCC+GGG 0.261181 5_4:+63204672 None:intergenic
AAAGGAAATCCACGACATTA+AGG 0.268743 5_4:-63210620 Msa0863460:CDS
ACATACATCAACTTCCTTCT+TGG 0.270303 5_4:+63207672 None:intergenic
AAACTGCCTTCTAGTAAAAT+TGG 0.274549 5_4:-63205319 Msa0863460:CDS
AAACTGCCTTCTAGTAAAAT+TGG 0.274549 5_4:-63205556 Msa0863460:CDS
AAACTGCCTTCTAGTAAAAT+TGG 0.274549 5_4:-63205793 Msa0863460:CDS
TTTCTCCTTACTCTAGAATT+AGG 0.289473 5_4:-63203517 Msa0863460:three_prime_UTR
ATGCTGTTTGTAGCTCTTAT+GGG 0.294420 5_4:-63209771 Msa0863460:intron
TTGTGTGCTTCTATGAATAA+AGG 0.301317 5_4:-63204485 Msa0863460:CDS
GTTTAAATGGAGCGCTTCTA+AGG 0.301906 5_4:-63210499 Msa0863460:CDS
AAACTGCCTTCTAGCAAAAT+TGG 0.302139 5_4:-63205082 Msa0863460:CDS
TATTGGCTTAGCTAATTCTA+AGG 0.304463 5_4:-63209683 Msa0863460:intron
CTTGACATTTCCTTTGATTC+CGG 0.305090 5_4:+63204773 None:intergenic
TTGCATGGATCTGCTGATAA+TGG 0.306430 5_4:-63210435 Msa0863460:CDS
AAATTTGCACCCATCCATTC+AGG 0.309814 5_4:-63203670 Msa0863460:CDS
CGGAAACATGCTTAACTAAT+GGG 0.315501 5_4:+63206438 None:intergenic
GTTGGCTGCTGAAAATATTA+TGG 0.320999 5_4:-63203992 Msa0863460:CDS
GTTGGCTTTGTTAAATCATC+TGG 0.325538 5_4:-63204902 Msa0863460:CDS
GCATGGAAGTTTGATCTAAC+TGG 0.326461 5_4:-63210384 Msa0863460:CDS
TCGGAAACATGCTTAACTAA+TGG 0.342529 5_4:+63206437 None:intergenic
ACCCTAATTATTTCAATTCA+AGG 0.347095 5_4:-63210826 Msa0863460:intron
ACCTTGAATTGAAATAATTA+GGG 0.356774 5_4:+63210825 None:intergenic
TCGGAGAAAGAGTGCGAAAA+AGG 0.357289 5_4:+63210900 None:intergenic
AAACTTCTTTGATTTGATTC+CGG 0.358022 5_4:+63204671 None:intergenic
TCTACTGAAAAGATCGTATC+TGG 0.363857 5_4:-63204815 Msa0863460:CDS
CGTTGTTGTCGAAAGATAAA+AGG 0.370169 5_4:-63210344 Msa0863460:CDS
AAGTCAAATTCAAATTTGTC+TGG 0.370296 5_4:-63204632 Msa0863460:CDS
CACCCATCCATTCAGGTGGT+TGG 0.371904 5_4:-63203663 Msa0863460:CDS
CGTACATGTGACCATGCTCC+TGG 0.380370 5_4:+63204022 None:intergenic
CCTGTTTGTCTTGAGTCTCC+TGG 0.383586 5_4:+63203860 None:intergenic
ACACTTACAAGCAATATATA+AGG 0.388898 5_4:+63206095 None:intergenic
GGATGAAACTGAAGCTGAAA+TGG 0.389433 5_4:-63210598 Msa0863460:CDS
TATATAAGGATACGATTGTT+TGG 0.390253 5_4:+63206109 None:intergenic
GGAAAACTGCCTTCTAAAAC+TGG 0.394213 5_4:-63204848 Msa0863460:CDS
AATTGAAATAATTAGGGTTA+CGG 0.397970 5_4:+63210831 None:intergenic
GAAGCAACTACAAGAGATAT+TGG 0.397993 5_4:-63209700 Msa0863460:CDS
GTTGGCTCTGTTAAATCATC+TGG 0.398623 5_4:-63205376 Msa0863460:CDS
TGCATGGATCTGCTGATAAT+GGG 0.399149 5_4:-63210434 Msa0863460:CDS
GAGCAACATGTGCAAGGATA+AGG 0.399632 5_4:-63210202 Msa0863460:CDS
TCAACGCTCTCTGTAGTTGT+AGG 0.402831 5_4:+63205175 None:intergenic
TTTCTTGTTCAGATATTTCA+AGG 0.404687 5_4:-63204697 Msa0863460:CDS
TTCTAACAGGCATGATCGAC+AGG 0.411514 5_4:+63204411 None:intergenic
GGAACAGTGGCTCTAGTGTC+GGG 0.412789 5_4:+63205229 None:intergenic
GGAACAGTGGCTCTAGTGTC+GGG 0.412789 5_4:+63205466 None:intergenic
GTTGGCTCTGTTAAATCAAC+TGG 0.413221 5_4:-63205139 Msa0863460:CDS
TCAACGCTCTCTGTAGTTGT+AGG 0.416563 5_4:+63205412 None:intergenic
AAAGTTGATGATAGCGAAAA+GGG 0.419421 5_4:-63210471 Msa0863460:CDS
GAATCTTTATGTGATTCTCT+TGG 0.422617 5_4:-63207700 Msa0863460:CDS
TTTACCTCACACTTGGCCAT+TGG 0.425784 5_4:+63204530 None:intergenic
TGCTTTGCATGTGGCGAGCT+GGG 0.428860 5_4:-63207509 Msa0863460:CDS
ATGCTTTGCATGTGGCGAGC+TGG 0.434494 5_4:-63207510 Msa0863460:CDS
AACGCTTTATTGAGATGAAA+AGG 0.436927 5_4:-63210638 Msa0863460:exon
TTACGGTTTGTGAGAGAGAA+TGG 0.437917 5_4:+63210848 None:intergenic
CAAAGTTGATGATAGCGAAA+AGG 0.440091 5_4:-63210472 Msa0863460:CDS
ATGATGTTGCAACAAGGGCT+TGG 0.440125 5_4:-63206144 Msa0863460:CDS
AAGGAAATCCACGACATTAA+GGG 0.440617 5_4:-63210619 Msa0863460:CDS
AGCTAGATCCTCAATATTGT+TGG 0.443141 5_4:-63204151 Msa0863460:CDS
GGAGGCAATACACTTCTAAC+AGG 0.443800 5_4:+63204398 None:intergenic
TTAGAAGCGCTCCATTTAAA+CGG 0.444864 5_4:+63210501 None:intergenic
GTTGGGAGATGTTGAGGATA+AGG 0.445980 5_4:-63204106 Msa0863460:CDS
CGACACTAGAGCCACTGTTC+CGG 0.451598 5_4:-63205227 Msa0863460:CDS
CGACACTAGAGCCACTGTTC+CGG 0.451598 5_4:-63205464 Msa0863460:CDS
ATCGAGATTGAAATCGAAAT+CGG 0.452726 5_4:+63210881 None:intergenic
CTCAAAGAATTCGTCTGAAA+AGG 0.454422 5_4:-63204723 Msa0863460:CDS
CTGGATGCTGATTCAGAGAA+AGG 0.455585 5_4:-63204374 Msa0863460:CDS
CCAAATAAAGCACGACAATC+AGG 0.457304 5_4:-63204456 Msa0863460:CDS
TATCTGGTTCAGATATTTCA+AGG 0.457360 5_4:-63204799 Msa0863460:CDS
TTGGATCATATGTCTCTGAT+TGG 0.460855 5_4:-63209724 Msa0863460:CDS
TGGGTTTAAGCCTTCACAAA+AGG 0.462222 5_4:-63209752 Msa0863460:CDS
ATGCTACTAAGGCGGATGGC+AGG 0.466552 5_4:-63207723 Msa0863460:CDS
CAAATTTCTTGCAGGTGTGA+TGG 0.470181 5_4:-63207766 Msa0863460:intron
CCGACACTAGATATAGTGTT+CGG 0.474683 5_4:-63205702 Msa0863460:CDS
CCGACACTAGATATAGTGTT+CGG 0.474683 5_4:-63205939 Msa0863460:CDS
TTTAATTTATTAACGTAAGA+GGG 0.476473 5_4:-63203616 Msa0863460:three_prime_UTR
AAATCAATACTTCTAATAAG+AGG 0.480522 5_4:-63204967 Msa0863460:CDS
AAATCAATACTTCTAATAAG+AGG 0.480522 5_4:-63205204 Msa0863460:CDS
AAATCAATACTTCTAATAAG+AGG 0.480522 5_4:-63205441 Msa0863460:CDS
CGACACTAGATATAGTGTTC+GGG 0.482018 5_4:-63205701 Msa0863460:CDS
CGACACTAGATATAGTGTTC+GGG 0.482018 5_4:-63205938 Msa0863460:CDS
TGATGTTGCAACAAGGGCTT+GGG 0.483746 5_4:-63206143 Msa0863460:CDS
GACTTTAAGAGATCATGATT+CGG 0.484219 5_4:+63203943 None:intergenic
AGGTCGACGATGCAGATAAT+CGG 0.485330 5_4:-63204436 Msa0863460:CDS
CCAGGAGACTCAAGACAAAC+AGG 0.485498 5_4:-63203860 Msa0863460:CDS
GGAACAGTAGCTCTAGTGTC+GGG 0.487285 5_4:+63204992 None:intergenic
CGACACTAGAGCTACTGTTC+CGG 0.488145 5_4:-63204990 Msa0863460:CDS
CGAACACTATATCTAGTGTC+GGG 0.489317 5_4:+63205703 None:intergenic
CGAACACTATATCTAGTGTC+GGG 0.489317 5_4:+63205940 None:intergenic
ATATTATGGATGGTGATTCT+GGG 0.490562 5_4:-63203978 Msa0863460:CDS
TTGCTGCGTCTGTGAAGGCT+TGG 0.490598 5_4:-63206360 Msa0863460:CDS
CAGTACCTAATTCTAGAGTA+AGG 0.493313 5_4:+63203512 None:intergenic
GGCCATTACAATGAGGAAGC+TGG 0.493545 5_4:-63204085 Msa0863460:CDS
ATCAAATGAAAGATCTGAAA+CGG 0.494136 5_4:-63204570 Msa0863460:CDS
GTTGAATTGAAGAACAATGT+TGG 0.496363 5_4:-63204920 Msa0863460:CDS
GAGCCAACCACCTGAATGGA+TGG 0.496619 5_4:+63203660 None:intergenic
ATGAGATCAGTGATGAGCTT+GGG 0.498461 5_4:-63205990 Msa0863460:CDS
CGGAACAGTGGCTCTAGTGT+CGG 0.498689 5_4:+63205228 None:intergenic
CGGAACAGTGGCTCTAGTGT+CGG 0.498689 5_4:+63205465 None:intergenic
CGAGTAGCTGCAAAACGAGC+TGG 0.499101 5_4:+63203724 None:intergenic
CTTCGAGCCAACCACCTGAA+TGG 0.501610 5_4:+63203656 None:intergenic
TGCTACTAAGGCGGATGGCA+GGG 0.502125 5_4:-63207722 Msa0863460:CDS
CAAACTGCAAATTGCAACTC+AGG 0.505005 5_4:+63206323 None:intergenic
ATCCAGCTTCCTCATTGTAA+TGG 0.510430 5_4:+63204083 None:intergenic
ATACTTCTAATAAGAGGAAG+AGG 0.512282 5_4:-63205198 Msa0863460:CDS
TTCAAGGACACCGGAATCAA+AGG 0.514134 5_4:-63204783 Msa0863460:CDS
GAGGTCATTTCATGCTACTA+AGG 0.515381 5_4:-63207734 Msa0863460:CDS
AGTTTCATCCCTTAATGTCG+TGG 0.516017 5_4:+63210611 None:intergenic
TGAAGGCTTGGAAAATAAGA+TGG 0.518997 5_4:-63206348 Msa0863460:CDS
TACGGTTTGTGAGAGAGAAT+GGG 0.520673 5_4:+63210849 None:intergenic
TCAACTCTCTCTGTAGATGT+AGG 0.522483 5_4:+63204938 None:intergenic
AGTCAAATTCAAATTTGTCT+GGG 0.523249 5_4:-63204631 Msa0863460:CDS
GCAGAAGGATCTAAAGTGAC+TGG 0.527295 5_4:-63205106 Msa0863460:CDS
GCAGAAGGATCTAAAGTGAC+TGG 0.527295 5_4:-63205343 Msa0863460:CDS
GCACACAATTTCTGACCAGT+TGG 0.529045 5_4:+63204500 None:intergenic
GCAGAAGGATCTAAAGTGAC+TGG 0.529446 5_4:-63205580 Msa0863460:CDS
GCAGAAGGATCTAAAGTGAC+TGG 0.529446 5_4:-63205817 Msa0863460:CDS
TTCAGATATTTCAAGGAACC+CGG 0.530643 5_4:-63204690 Msa0863460:CDS
CACACAATTTCTGACCAGTT+GGG 0.534596 5_4:+63204501 None:intergenic
TAGATCCTCAATATTGTTGG+AGG 0.536002 5_4:-63204148 Msa0863460:CDS
CTTATCACTGGCCTCTTCAA+AGG 0.538365 5_4:+63205048 None:intergenic
TTCGACAACAACGATACCTC+GGG 0.542400 5_4:+63210354 None:intergenic
TGTGCAAGGATAAGGATTTG+AGG 0.547201 5_4:-63210194 Msa0863460:intron
AAATTCAAATTTGTCTGGGA+AGG 0.552172 5_4:-63204627 Msa0863460:CDS
ACATGATGGTAACGCTGACC+AGG 0.555035 5_4:-63203878 Msa0863460:CDS
TGGATGCTGATTCAGAGAAA+GGG 0.555256 5_4:-63204373 Msa0863460:intron
GTTGAATTGAAGAACAATGT+TGG 0.555934 5_4:-63205157 Msa0863460:CDS
GTTGAATTGAAGAACAATGT+TGG 0.555934 5_4:-63205394 Msa0863460:CDS
GGGTTCTTCTGATAAAGATA+AGG 0.559791 5_4:-63207489 Msa0863460:CDS
TAGAAGTGTATTGCCTCCAC+TGG 0.561132 5_4:-63204393 Msa0863460:CDS
CACACCCTCCAACAATATTG+AGG 0.562258 5_4:+63204143 None:intergenic
ATCAGATGGTTTCTGATACC+CGG 0.566808 5_4:+63208596 None:intergenic
CATGAGATCAGTGATGAGCT+TGG 0.567016 5_4:-63205991 Msa0863460:CDS
AGGAGTCTCAAGCTTATCAC+TGG 0.567487 5_4:+63205036 None:intergenic
AGGAGTCTCAAGCTTATCAC+TGG 0.567487 5_4:+63205273 None:intergenic
CAGGAGCATGGTCACATGTA+CGG 0.568783 5_4:-63204021 Msa0863460:CDS
AGGAGTCTCAAGCTTATCAC+TGG 0.569049 5_4:+63205510 None:intergenic
AGGAGTCTCAAGCTTATCAC+TGG 0.569049 5_4:+63205747 None:intergenic
GCACAAGTTGGGAGATGTTG+AGG 0.575629 5_4:-63204112 Msa0863460:CDS
TGCAATGTGGATGATAGAAA+CGG 0.577256 5_4:+63206465 None:intergenic
CGGAACAGTAGCTCTAGTGT+CGG 0.577728 5_4:+63204991 None:intergenic
TTCTCTGAATCAGCATCCAG+TGG 0.578278 5_4:+63204377 None:intergenic
GCACATAGATCTAATGTGAC+CGG 0.583259 5_4:-63204869 Msa0863460:CDS
CTTATCACTGGCCTCTTCAG+AGG 0.587077 5_4:+63205285 None:intergenic
CATTGATGATGTTGCAACAA+GGG 0.587387 5_4:-63206149 Msa0863460:CDS
TCTGACAAGAGCACTGCAGA+AGG 0.590358 5_4:-63205595 Msa0863460:CDS
TCTGACAAGAGCACTGCAGA+AGG 0.590358 5_4:-63205832 Msa0863460:CDS
ATGCAACAAACCTCATCAGA+TGG 0.590404 5_4:+63208582 None:intergenic
TTCAGATATTTCAAGGACAC+CGG 0.592573 5_4:-63204792 Msa0863460:CDS
CCGAACACTATATCTAGTGT+CGG 0.592728 5_4:+63205702 None:intergenic
CCGAACACTATATCTAGTGT+CGG 0.592728 5_4:+63205939 None:intergenic
GTACATGTGACCATGCTCCT+GGG 0.597289 5_4:+63204023 None:intergenic
ATGAAGCCTACAACTACAGA+GGG 0.601758 5_4:-63205655 Msa0863460:CDS
ATGAAGCCTACAACTACAGA+GGG 0.601758 5_4:-63205892 Msa0863460:CDS
TGATGAAGACTCAAAAGTAG+AGG 0.606537 5_4:-63208404 Msa0863460:CDS
TGTTGTCGAAAGATAAAAGG+TGG 0.608701 5_4:-63210341 Msa0863460:CDS
TATTATGGATGGTGATTCTG+GGG 0.611629 5_4:-63203977 Msa0863460:CDS
TGATAAAGATAAGGATGCTG+AGG 0.611934 5_4:-63207480 Msa0863460:intron
CAGCATCAATGCTTTGCATG+TGG 0.612556 5_4:-63207518 Msa0863460:CDS
TTTCGACAACAACGATACCT+CGG 0.613923 5_4:+63210353 None:intergenic
AAAGTCATAGCCCAGGAGCA+TGG 0.615793 5_4:-63204033 Msa0863460:CDS
AGAAAGGCAATTGAAAAGCA+TGG 0.615795 5_4:-63203775 Msa0863460:CDS
AGCCAACCACCTGAATGGAT+GGG 0.618326 5_4:+63203661 None:intergenic
TGGATGATAGAAACGGTCAC+AGG 0.618593 5_4:+63206472 None:intergenic
ACTGGCAAGAGCATTGCAGA+AGG 0.620198 5_4:-63205121 Msa0863460:CDS
TCTGGCAAGAGCATTGCAGA+AGG 0.620198 5_4:-63205358 Msa0863460:CDS
TTTGCACCCATCCATTCAGG+TGG 0.621598 5_4:-63203667 Msa0863460:CDS
ATTAGTTAAGCATGTTTCCG+AGG 0.622307 5_4:-63206435 Msa0863460:CDS
TTTCATGCTACTAAGGCGGA+TGG 0.625596 5_4:-63207727 Msa0863460:CDS
AGTATTGATTTCCGGAACAG+TGG 0.628769 5_4:+63205216 None:intergenic
AGTATTGATTTCCGGAACAG+TGG 0.628769 5_4:+63205453 None:intergenic
GCTGCTGAAAATATTATGGA+TGG 0.638442 5_4:-63203988 Msa0863460:CDS
GTCATTTCATGCTACTAAGG+CGG 0.639994 5_4:-63207731 Msa0863460:CDS
CAAGCCAATGGCCAAGTGTG+AGG 0.640616 5_4:-63204534 Msa0863460:CDS
AATGTCAAGTAAGTGTGTGA+CGG 0.642271 5_4:-63204759 Msa0863460:CDS
AGATCCTCAATATTGTTGGA+GGG 0.643952 5_4:-63204147 Msa0863460:CDS
GTTGCAACAAGGGCTTGGGA+AGG 0.645488 5_4:-63206139 Msa0863460:CDS
AAACTGCAAATTGCAACTCA+GGG 0.647686 5_4:+63206324 None:intergenic
CTTATCACTGGTCTCTCCAG+AGG 0.650001 5_4:+63205522 None:intergenic
CTTATCACTGGTCTCTCCAG+AGG 0.650001 5_4:+63205759 None:intergenic
GGAAACATGCTTAACTAATG+GGG 0.652661 5_4:+63206439 None:intergenic
TCTGAATCAGCATCCAGTGG+AGG 0.655053 5_4:+63204380 None:intergenic
GTATCAGAAACCATCTGATG+AGG 0.656415 5_4:-63208592 Msa0863460:intron
ACATTGATGATGTTGCAACA+AGG 0.656664 5_4:-63206150 Msa0863460:CDS
GAACAGTGGCTCTAGTGTCG+GGG 0.663261 5_4:+63205230 None:intergenic
GAACAGTGGCTCTAGTGTCG+GGG 0.663261 5_4:+63205467 None:intergenic
TATCATCTCGAAGACAACGA+TGG 0.663743 5_4:-63210549 Msa0863460:CDS
GAACACTATATCTAGTGTCG+GGG 0.663913 5_4:+63205704 None:intergenic
GAACACTATATCTAGTGTCG+GGG 0.663913 5_4:+63205941 None:intergenic
GAACAGTAGCTCTAGTGTCG+GGG 0.665281 5_4:+63204993 None:intergenic
GGATCAAGCTTCAGAAACCG+AGG 0.675718 5_4:-63210320 Msa0863460:CDS
AAGTTGATGATAGCGAAAAG+GGG 0.678266 5_4:-63210470 Msa0863460:CDS
GATGAAGCCTACAACTACAG+AGG 0.681264 5_4:-63205656 Msa0863460:CDS
GATGAAGCCTACAACTACAG+AGG 0.681264 5_4:-63205893 Msa0863460:CDS
AGGATAAGGCCATTACAATG+AGG 0.684721 5_4:-63204092 Msa0863460:CDS
TGTGCATTGTGCGACAATGG+CGG 0.685738 5_4:-63208361 Msa0863460:CDS
TCACATGTACGGTGACAAGT+TGG 0.688440 5_4:-63204010 Msa0863460:CDS
ACTAATGGGGCAATGCAATG+TGG 0.689247 5_4:+63206452 None:intergenic
AAAGACTCAACAGATAATCG+AGG 0.689659 5_4:+63210228 None:intergenic
TCTAACAGGCATGATCGACA+GGG 0.691509 5_4:+63204412 None:intergenic
GAAGCCTACAACTACAGAGG+GGG 0.698643 5_4:-63205653 Msa0863460:CDS
GAAGCCTACAACTACAGAGG+GGG 0.698643 5_4:-63205890 Msa0863460:CDS
TCTAACTGGTATGAAACCCG+AGG 0.718528 5_4:-63210370 Msa0863460:CDS
GGTGTGATGGAGCATGCATG+AGG 0.736595 5_4:-63207753 Msa0863460:CDS
TGAAGCCTACAACTACAGAG+GGG 0.764333 5_4:-63205654 Msa0863460:CDS
TGAAGCCTACAACTACAGAG+GGG 0.764333 5_4:-63205891 Msa0863460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAAAAATATTTGTTC+AGG - chr5_4:63205756-63205775 Msa0863460:CDS 10.0%
!! AAAAAAAAATTAGGATATAT+TGG + chr5_4:63206673-63206692 None:intergenic 10.0%
!! CATCTTAATATAATAAAATT+TGG + chr5_4:63207147-63207166 None:intergenic 10.0%
!!! CTTTTTTTTTTTTTTTTATC+TGG - chr5_4:63207857-63207876 Msa0863460:intron 10.0%
!!! AATTTATAGAAATTTTTCTG+TGG + chr5_4:63203538-63203557 None:intergenic 15.0%
!! TACAAAAATAGTAATCAAAT+TGG + chr5_4:63203820-63203839 None:intergenic 15.0%
!!! ATATATGATTTTAGTTTCAT+AGG - chr5_4:63205157-63205176 Msa0863460:CDS 15.0%
!!! TAGTTTTTTGAATTTTGAAT+GGG - chr5_4:63205203-63205222 Msa0863460:CDS 15.0%
!!! CAAGAAATTTTTAAAAAATC+AGG - chr5_4:63206368-63206387 Msa0863460:CDS 15.0%
!! AAAAACTTTGTCAAAAATTT+AGG + chr5_4:63207668-63207687 None:intergenic 15.0%
!! AAAAAAAAAGACAATTAAAC+AGG + chr5_4:63207847-63207866 None:intergenic 15.0%
!! TTGATTGATTAAGATATTAA+TGG - chr5_4:63207892-63207911 Msa0863460:intron 15.0%
!!! ATTAAGATATTAATGGTTTT+TGG - chr5_4:63207899-63207918 Msa0863460:intron 15.0%
!! TAACTTCATTTATCATTATT+TGG - chr5_4:63208461-63208480 Msa0863460:intron 15.0%
!! AATTGATAAAAATGATAGAA+AGG - chr5_4:63210693-63210712 Msa0863460:intron 15.0%
!!! TTTTAATTTATTAACGTAAG+AGG - chr5_4:63210867-63210886 Msa0863460:five_prime_UTR 15.0%
!!! TTTAATTTATTAACGTAAGA+GGG - chr5_4:63210868-63210887 Msa0863460:five_prime_UTR 15.0%
!! AATTGAAATAATTAGGGTTA+CGG + chr5_4:63203656-63203675 None:intergenic 20.0%
!! ACCTTGAATTGAAATAATTA+GGG + chr5_4:63203662-63203681 None:intergenic 20.0%
!! TACCTTGAATTGAAATAATT+AGG + chr5_4:63203663-63203682 None:intergenic 20.0%
!!! TAATTTCTAAAATCTGAAAC+AGG + chr5_4:63203751-63203770 None:intergenic 20.0%
!!! TGTTTCAGATTTTAGAAATT+AGG - chr5_4:63203750-63203769 Msa0863460:CDS 20.0%
!!! GTTTCAGATTTTAGAAATTA+GGG - chr5_4:63203751-63203770 Msa0863460:CDS 20.0%
!! ATGCAAATGATTTAGTATTT+GGG - chr5_4:63204339-63204358 Msa0863460:intron 20.0%
!! TTTCAATCATCTAATCATAA+TGG + chr5_4:63204572-63204591 None:intergenic 20.0%
!! ATTAGATGATTGAAAATGTT+TGG - chr5_4:63204577-63204596 Msa0863460:CDS 20.0%
!!! AAATTTTCATTTTCCTTAAG+TGG - chr5_4:63204983-63205002 Msa0863460:CDS 20.0%
!!! GTAGTTTTTTGAATTTTGAA+TGG - chr5_4:63205202-63205221 Msa0863460:CDS 20.0%
!! TTCAGATTGAATAAAAAATG+AGG + chr5_4:63205370-63205389 None:intergenic 20.0%
!!! TCATTTTTTATTCAATCTGA+AGG - chr5_4:63205369-63205388 Msa0863460:CDS 20.0%
!! ACTAACTCAAAGAATAAATA+AGG + chr5_4:63205407-63205426 None:intergenic 20.0%
!! ATTAAAATGAAGTACATATG+TGG + chr5_4:63205818-63205837 None:intergenic 20.0%
!!! AGAACTTTGTTATGAATAAT+AGG - chr5_4:63206214-63206233 Msa0863460:intron 20.0%
!! ATATAGACAATTCAAATTAG+TGG + chr5_4:63206562-63206581 None:intergenic 20.0%
!!! AAATGGTAAAAACTTTTTAC+GGG + chr5_4:63206650-63206669 None:intergenic 20.0%
!!! GAAATGGTAAAAACTTTTTA+CGG + chr5_4:63206651-63206670 None:intergenic 20.0%
!! AAATTAGGATATATTGGAAA+TGG + chr5_4:63206667-63206686 None:intergenic 20.0%
!!! TTGTTTTAAAAAGACTAACT+AGG + chr5_4:63207113-63207132 None:intergenic 20.0%
!! TGACTTAATTCATATTGTAT+AGG - chr5_4:63208266-63208285 Msa0863460:intron 20.0%
!! GACTTAATTCATATTGTATA+GGG - chr5_4:63208267-63208286 Msa0863460:intron 20.0%
!! ACTTAATTCATATTGTATAG+GGG - chr5_4:63208268-63208287 Msa0863460:intron 20.0%
!!! AATTTTATATGATCTCTTAC+AGG + chr5_4:63208523-63208542 None:intergenic 20.0%
!!! AATTTTATATGATCTCTTAC+AGG + chr5_4:63208523-63208542 None:intergenic 20.0%
!!! AATTTTATATGATCTCTTAC+AGG + chr5_4:63208523-63208542 None:intergenic 20.0%
!!! TTATTAGAAGTATTGATTTC+CGG + chr5_4:63209042-63209061 None:intergenic 20.0%
!! AAATCAATACTTCTAATAAG+AGG - chr5_4:63209043-63209062 Msa0863460:intron 20.0%
!!! AATTTTATATGATCTCTTAC+AGG + chr5_4:63208523-63208542 None:intergenic 20.0%
!!! TTATTAGAAGTATTGATTTC+CGG + chr5_4:63209042-63209061 None:intergenic 20.0%
!! AAATCAATACTTCTAATAAG+AGG - chr5_4:63209043-63209062 Msa0863460:intron 20.0%
!!! AATTTTATATGATCTCTTAC+AGG + chr5_4:63208523-63208542 None:intergenic 20.0%
!!! TTATTAGAAGTATTGATTTC+CGG + chr5_4:63209042-63209061 None:intergenic 20.0%
!! AAATCAATACTTCTAATAAG+AGG - chr5_4:63209043-63209062 Msa0863460:intron 20.0%
!!! TTTTTCTTACTTTCATTTAC+AGG + chr5_4:63210580-63210599 None:intergenic 20.0%
!!! CTTTTTTGTTGTGAAAAAAT+TGG - chr5_4:63210941-63210960 Msa0863460:five_prime_UTR 20.0%
! ACCCTAATTATTTCAATTCA+AGG - chr5_4:63203658-63203677 Msa0863460:CDS 25.0%
!!! TATCTCTGATTTTAGTCATT+AGG - chr5_4:63203781-63203800 Msa0863460:CDS 25.0%
!!! ATCTCTGATTTTAGTCATTA+GGG - chr5_4:63203782-63203801 Msa0863460:CDS 25.0%
!! TTTCTGTTTTACCGTTTAAA+TGG - chr5_4:63203972-63203991 Msa0863460:CDS 25.0%
! GATGCAAATGATTTAGTATT+TGG - chr5_4:63204338-63204357 Msa0863460:intron 25.0%
! TGCAAATGATTTAGTATTTG+GGG - chr5_4:63204340-63204359 Msa0863460:intron 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr5_4:63204366-63204385 None:intergenic 25.0%
!! TTTAAAGTCAAACACATTAG+CGG - chr5_4:63204617-63204636 Msa0863460:CDS 25.0%
!! TTTTTGAATTTTGAATGGGA+TGG - chr5_4:63205207-63205226 Msa0863460:CDS 25.0%
!!! GTTTACATTGTTATTTGAGT+GGG - chr5_4:63205312-63205331 Msa0863460:CDS 25.0%
!!! TTTTTTATTCAATCTGAAGG+AGG - chr5_4:63205372-63205391 Msa0863460:CDS 25.0%
! AGAATATCAAGTTCAAGAAT+TGG - chr5_4:63205453-63205472 Msa0863460:CDS 25.0%
! GAGCAAAGAGATTATATTAA+AGG + chr5_4:63205583-63205602 None:intergenic 25.0%
! ACAAACTATTCGTTAATTCA+AGG + chr5_4:63205607-63205626 None:intergenic 25.0%
!!! ACACATCTCATTTTTGTATA+AGG - chr5_4:63205667-63205686 Msa0863460:CDS 25.0%
!!! CACATCTCATTTTTGTATAA+GGG - chr5_4:63205668-63205687 Msa0863460:CDS 25.0%
! GTATGAATTCTTCTTCATAT+TGG - chr5_4:63206158-63206177 Msa0863460:CDS 25.0%
!!! TACTAAAAGGCATCATTATT+CGG + chr5_4:63206250-63206269 None:intergenic 25.0%
!! AATAATGATGCCTTTTAGTA+TGG - chr5_4:63206250-63206269 Msa0863460:intron 25.0%
!! TTATTGTCTGAAACTCATAT+GGG + chr5_4:63206463-63206482 None:intergenic 25.0%
!! TTTATTGTCTGAAACTCATA+TGG + chr5_4:63206464-63206483 None:intergenic 25.0%
! TATAGTTCATCTGTATCTTT+AGG + chr5_4:63206525-63206544 None:intergenic 25.0%
! TTTAGAGATGATTCAAAGTA+GGG + chr5_4:63206605-63206624 None:intergenic 25.0%
! TTACGGGAGATAAATTTAAA+TGG + chr5_4:63206634-63206653 None:intergenic 25.0%
! AAAGTTAACAAATTTCTTGC+AGG - chr5_4:63206710-63206729 Msa0863460:intron 25.0%
! AAAAAGACTAACTAGGATAA+CGG + chr5_4:63207106-63207125 None:intergenic 25.0%
!! TCATGTGTAATTGAAGATTT+TGG - chr5_4:63207197-63207216 Msa0863460:intron 25.0%
! TAATTCAAATTAACCGAATG+AGG + chr5_4:63207597-63207616 None:intergenic 25.0%
! AAAATTTAGGCATTTACAAC+AGG + chr5_4:63207655-63207674 None:intergenic 25.0%
!!! ATTATTTTTCTCAAGATCCT+CGG + chr5_4:63208069-63208088 None:intergenic 25.0%
! GAAAAAGATAAAACTTACGT+AGG + chr5_4:63208224-63208243 None:intergenic 25.0%
! CTTAATTCATATTGTATAGG+GGG - chr5_4:63208269-63208288 Msa0863460:intron 25.0%
! TATATAAGGATACGATTGTT+TGG + chr5_4:63208378-63208397 None:intergenic 25.0%
! ACACTTACAAGCAATATATA+AGG + chr5_4:63208392-63208411 None:intergenic 25.0%
! ATTAACAAGGACAAATTTGA+AGG + chr5_4:63208433-63208452 None:intergenic 25.0%
! ATGATAAATGAAGTTACACA+GGG + chr5_4:63208457-63208476 None:intergenic 25.0%
! AATGATAAATGAAGTTACAC+AGG + chr5_4:63208458-63208477 None:intergenic 25.0%
! TTTCTTGTTCAGATATTTCA+AGG - chr5_4:63209787-63209806 Msa0863460:intron 25.0%
!!! AAACTTCTTTGATTTGATTC+CGG + chr5_4:63209816-63209835 None:intergenic 25.0%
! AAGTCAAATTCAAATTTGTC+TGG - chr5_4:63209852-63209871 Msa0863460:intron 25.0%
! AGTCAAATTCAAATTTGTCT+GGG - chr5_4:63209853-63209872 Msa0863460:intron 25.0%
!!! TCAGATCTTTCATTTGATTT+TGG + chr5_4:63209912-63209931 None:intergenic 25.0%
! ATCAAATGAAAGATCTGAAA+CGG - chr5_4:63209914-63209933 Msa0863460:intron 25.0%
! TAATATTTGTCACTACAATG+CGG - chr5_4:63210209-63210228 Msa0863460:CDS 25.0%
!!! TTTTGTTGTGAAAAAATTGG+TGG - chr5_4:63210944-63210963 Msa0863460:five_prime_UTR 25.0%
ATCGAGATTGAAATCGAAAT+CGG + chr5_4:63203606-63203625 None:intergenic 30.0%
! AACGCTTTATTGAGATGAAA+AGG - chr5_4:63203846-63203865 Msa0863460:CDS 30.0%
!! AAAGTTGATGATAGCGAAAA+GGG - chr5_4:63204013-63204032 Msa0863460:CDS 30.0%
! GATTATCTGTTGAGTCTTTT+TGG - chr5_4:63204260-63204279 Msa0863460:intron 30.0%
AAAAATAAGCCAATCCAAAC+AGG - chr5_4:63204493-63204512 Msa0863460:CDS 30.0%
! TCCAATAAATCCTTTTGTGA+AGG + chr5_4:63204745-63204764 None:intergenic 30.0%
!! TATTGGCTTAGCTAATTCTA+AGG - chr5_4:63204801-63204820 Msa0863460:CDS 30.0%
AGATATTGTGATGTTGAACT+TGG - chr5_4:63204843-63204862 Msa0863460:CDS 30.0%
ACAAGTACAATTTGAATCTC+AGG + chr5_4:63204902-63204921 None:intergenic 30.0%
!! AAACCATCTGTGTTTGTTTT+TGG - chr5_4:63205055-63205074 Msa0863460:CDS 30.0%
!!! TTTTTGGCTTATTGTCTTCT+TGG - chr5_4:63205071-63205090 Msa0863460:CDS 30.0%
GTACAAAATCAGCAATGATA+TGG - chr5_4:63205102-63205121 Msa0863460:CDS 30.0%
!! GGTTTACATTGTTATTTGAG+TGG - chr5_4:63205311-63205330 Msa0863460:CDS 30.0%
ATGCACGAAACTAAATAACT+CGG - chr5_4:63205344-63205363 Msa0863460:CDS 30.0%
TGAATATTGCAAAGTAGTGT+TGG - chr5_4:63205540-63205559 Msa0863460:CDS 30.0%
! CTTTGTTTGATTATGATGCT+GGG - chr5_4:63205779-63205798 Msa0863460:CDS 30.0%
TTTGTTTGATTATGATGCTG+GGG - chr5_4:63205780-63205799 Msa0863460:CDS 30.0%
TTATTGCACACCATACTAAA+AGG + chr5_4:63206263-63206282 None:intergenic 30.0%
! CTTTAGAGATGATTCAAAGT+AGG + chr5_4:63206606-63206625 None:intergenic 30.0%
GAATCTTTATGTGATTCTCT+TGG - chr5_4:63206784-63206803 Msa0863460:intron 30.0%
AGTTTCTACATCATTATCTG+AGG + chr5_4:63206879-63206898 None:intergenic 30.0%
AAAAGACTAACTAGGATAAC+GGG + chr5_4:63207105-63207124 None:intergenic 30.0%
! GTTATGTTTGTGACATCTTT+TGG - chr5_4:63207219-63207238 Msa0863460:intron 30.0%
TACATATATCCCAAATGAGA+AGG - chr5_4:63207378-63207397 Msa0863460:intron 30.0%
ACATATATCCCAAATGAGAA+GGG - chr5_4:63207379-63207398 Msa0863460:intron 30.0%
! AATTTGTTCTTTGTCCTTCT+TGG - chr5_4:63207439-63207458 Msa0863460:intron 30.0%
ACAATCAAATACAACCTACA+TGG + chr5_4:63207568-63207587 None:intergenic 30.0%
! AAGCCTTATATAGAAGTATG+TGG - chr5_4:63207626-63207645 Msa0863460:intron 30.0%
TTGCCACATACTTCTATATA+AGG + chr5_4:63207632-63207651 None:intergenic 30.0%
! TAGAGCTTTGATATGCTTTA+TGG - chr5_4:63207938-63207957 Msa0863460:intron 30.0%
TCTTGAGAAAAATAATGCTG+AGG - chr5_4:63208073-63208092 Msa0863460:intron 30.0%
CTTGAGAAAAATAATGCTGA+GGG - chr5_4:63208074-63208093 Msa0863460:intron 30.0%
TTGAGAAAAATAATGCTGAG+GGG - chr5_4:63208075-63208094 Msa0863460:intron 30.0%
!!! GTTGATTCTGAAGTTGATTT+TGG - chr5_4:63208291-63208310 Msa0863460:intron 30.0%
TATTGCTTGTAAGTGTTATG+TGG - chr5_4:63208396-63208415 Msa0863460:CDS 30.0%
AAACTGCCTTCTAGTAAAAT+TGG - chr5_4:63208691-63208710 Msa0863460:intron 30.0%
AAACTGCCTTCTAGTAAAAT+TGG - chr5_4:63208691-63208710 Msa0863460:intron 30.0%
GTTGAATTGAAGAACAATGT+TGG - chr5_4:63209090-63209109 Msa0863460:intron 30.0%
AAACTGCCTTCTAGTAAAAT+TGG - chr5_4:63208691-63208710 Msa0863460:intron 30.0%
ATACTTCTAATAAGAGGAAG+AGG - chr5_4:63209286-63209305 Msa0863460:intron 30.0%
GTTGAATTGAAGAACAATGT+TGG - chr5_4:63209090-63209109 Msa0863460:intron 30.0%
GTTGAATTGAAGAACAATGT+TGG - chr5_4:63209090-63209109 Msa0863460:intron 30.0%
!!! TTTTTGCTACCAGTTTTAGA+AGG + chr5_4:63209648-63209667 None:intergenic 30.0%
! TATCTGGTTCAGATATTTCA+AGG - chr5_4:63209685-63209704 Msa0863460:CDS 30.0%
!! AACTTCTTTGATTTGATTCC+GGG + chr5_4:63209815-63209834 None:intergenic 30.0%
AAATTCAAATTTGTCTGGGA+AGG - chr5_4:63209857-63209876 Msa0863460:intron 30.0%
TTTGACTAAAAACAAGCCAA+TGG - chr5_4:63209938-63209957 Msa0863460:intron 30.0%
TTGTGTGCTTCTATGAATAA+AGG - chr5_4:63209999-63210018 Msa0863460:intron 30.0%
! TGTGATAAAAAAGCACAAGT+TGG - chr5_4:63210360-63210379 Msa0863460:CDS 30.0%
! GTGATAAAAAAGCACAAGTT+GGG - chr5_4:63210361-63210380 Msa0863460:CDS 30.0%
AATATTATGGATGGTGATTC+TGG - chr5_4:63210505-63210524 Msa0863460:CDS 30.0%
ATATTATGGATGGTGATTCT+GGG - chr5_4:63210506-63210525 Msa0863460:CDS 30.0%
! GACTTTAAGAGATCATGATT+CGG + chr5_4:63210544-63210563 None:intergenic 30.0%
AAGAAAAAAAGCTCACATGA+TGG - chr5_4:63210592-63210611 Msa0863460:CDS 30.0%
GCTACTCGTAAATCAAAATT+TGG - chr5_4:63210775-63210794 Msa0863460:intron 30.0%
TCACAACAAAAAAGCTTGAA+AGG + chr5_4:63210935-63210954 None:intergenic 30.0%
AAAGGAAATCCACGACATTA+AGG - chr5_4:63203864-63203883 Msa0863460:CDS 35.0%
AAGGAAATCCACGACATTAA+GGG - chr5_4:63203865-63203884 Msa0863460:CDS 35.0%
GGTAAAACAGAAAAACACAC+AGG + chr5_4:63203965-63203984 None:intergenic 35.0%
!! TTAGAAGCGCTCCATTTAAA+CGG + chr5_4:63203986-63204005 None:intergenic 35.0%
! CTTTTCGCTATCATCAACTT+TGG + chr5_4:63204014-63204033 None:intergenic 35.0%
!! CAAAGTTGATGATAGCGAAA+AGG - chr5_4:63204012-63204031 Msa0863460:CDS 35.0%
!! AAGTTGATGATAGCGAAAAG+GGG - chr5_4:63204014-63204033 Msa0863460:CDS 35.0%
!! GGGTTGAAGATATTTTTGCA+TGG - chr5_4:63204034-63204053 Msa0863460:CDS 35.0%
! TTTTCATGGAGGTTATTGCA+TGG - chr5_4:63204083-63204102 Msa0863460:CDS 35.0%
CGTTGTTGTCGAAAGATAAA+AGG - chr5_4:63204140-63204159 Msa0863460:CDS 35.0%
TGTTGTCGAAAGATAAAAGG+TGG - chr5_4:63204143-63204162 Msa0863460:CDS 35.0%
!! GTTTTCTGAAAGCTTTTCCT+CGG + chr5_4:63204184-63204203 None:intergenic 35.0%
AAAGACTCAACAGATAATCG+AGG + chr5_4:63204259-63204278 None:intergenic 35.0%
! AAGGATTTGAGGTATTTCTC+TGG - chr5_4:63204301-63204320 Msa0863460:intron 35.0%
! AATGCTGTTTGTAGCTCTTA+TGG - chr5_4:63204712-63204731 Msa0863460:CDS 35.0%
! ATGCTGTTTGTAGCTCTTAT+GGG - chr5_4:63204713-63204732 Msa0863460:CDS 35.0%
GCCTTCACAAAAGGATTTAT+TGG - chr5_4:63204741-63204760 Msa0863460:CDS 35.0%
TTGGATCATATGTCTCTGAT+TGG - chr5_4:63204760-63204779 Msa0863460:CDS 35.0%
GAAGCAACTACAAGAGATAT+TGG - chr5_4:63204784-63204803 Msa0863460:CDS 35.0%
AAGCCAAAAACAAACACAGA+TGG + chr5_4:63205061-63205080 None:intergenic 35.0%
!! TATTGTCTTCTTGGTTTTCG+AGG - chr5_4:63205080-63205099 Msa0863460:CDS 35.0%
! CTTTATCGGTAATTTGTGTG+TGG - chr5_4:63205263-63205282 Msa0863460:CDS 35.0%
! TGGTAGTATGTCAAAAGCAT+TGG - chr5_4:63205290-63205309 Msa0863460:CDS 35.0%
TCAAGAATTGGATTCCTTAC+AGG - chr5_4:63205465-63205484 Msa0863460:CDS 35.0%
TTATGCAGTTCAATCCTGTA+AGG + chr5_4:63205482-63205501 None:intergenic 35.0%
TTACAGGATTGAACTGCATA+AGG - chr5_4:63205481-63205500 Msa0863460:CDS 35.0%
!! TATTGCAAAGTAGTGTTGGT+TGG - chr5_4:63205544-63205563 Msa0863460:CDS 35.0%
TGTGCAAAAGAACGACTAAA+AGG + chr5_4:63205703-63205722 None:intergenic 35.0%
!! GCTTTGTTTGATTATGATGC+TGG - chr5_4:63205778-63205797 Msa0863460:CDS 35.0%
! AGCTTTTGCTCTCAGTTTTA+GGG - chr5_4:63205858-63205877 Msa0863460:CDS 35.0%
AGGTTATACGTCTTGATTTC+AGG - chr5_4:63206023-63206042 Msa0863460:intron 35.0%
TGATGAAGACTCAAAAGTAG+AGG - chr5_4:63206080-63206099 Msa0863460:intron 35.0%
TAGTATGGTGTGCAATAATC+TGG - chr5_4:63206265-63206284 Msa0863460:intron 35.0%
AGTATGGTGTGCAATAATCT+GGG - chr5_4:63206266-63206285 Msa0863460:intron 35.0%
TATGCCCCACATAAATTTAG+TGG - chr5_4:63206435-63206454 Msa0863460:CDS 35.0%
ATGCCCCACATAAATTTAGT+GGG - chr5_4:63206436-63206455 Msa0863460:CDS 35.0%
! ATGATTCAAAGTAGGGCATT+TGG + chr5_4:63206598-63206617 None:intergenic 35.0%
!!! TTCTCTTGGTTTTACCAAGA+AGG - chr5_4:63206798-63206817 Msa0863460:intron 35.0%
ACATACATCAACTTCCTTCT+TGG + chr5_4:63206815-63206834 None:intergenic 35.0%
TTCTACATCATTATCTGAGG+TGG + chr5_4:63206876-63206895 None:intergenic 35.0%
!! TCCTGCAATTATTTTGCAAC+AGG + chr5_4:63206909-63206928 None:intergenic 35.0%
GGGTTCTTCTGATAAAGATA+AGG - chr5_4:63206995-63207014 Msa0863460:intron 35.0%
TGATAAAGATAAGGATGCTG+AGG - chr5_4:63207004-63207023 Msa0863460:intron 35.0%
AAAGACTAACTAGGATAACG+GGG + chr5_4:63207104-63207123 None:intergenic 35.0%
TCAATTACACATGAAAGCAG+AGG + chr5_4:63207191-63207210 None:intergenic 35.0%
!!! CTGATTTTCTTTGACTTGCT+AGG - chr5_4:63207299-63207318 Msa0863460:intron 35.0%
CATATATCCCAAATGAGAAG+GGG - chr5_4:63207380-63207399 Msa0863460:intron 35.0%
CTCAACTACTCAAAAACTGT+CGG + chr5_4:63207718-63207737 None:intergenic 35.0%
GATATGCTACATAATGTGCA+AGG + chr5_4:63207770-63207789 None:intergenic 35.0%
CATCAAAATCAACACATCAC+AGG + chr5_4:63207815-63207834 None:intergenic 35.0%
! AGGGGGATTCTCAAAATTTT+AGG + chr5_4:63207965-63207984 None:intergenic 35.0%
ACATTTAAAGACCTGAAAGG+GGG + chr5_4:63207982-63208001 None:intergenic 35.0%
CACATTTAAAGACCTGAAAG+GGG + chr5_4:63207983-63208002 None:intergenic 35.0%
GCACATTTAAAGACCTGAAA+GGG + chr5_4:63207984-63208003 None:intergenic 35.0%
AGCACATTTAAAGACCTGAA+AGG + chr5_4:63207985-63208004 None:intergenic 35.0%
TGCAATGTGGATGATAGAAA+CGG + chr5_4:63208022-63208041 None:intergenic 35.0%
GGAAACATGCTTAACTAATG+GGG + chr5_4:63208048-63208067 None:intergenic 35.0%
CGGAAACATGCTTAACTAAT+GGG + chr5_4:63208049-63208068 None:intergenic 35.0%
TCGGAAACATGCTTAACTAA+TGG + chr5_4:63208050-63208069 None:intergenic 35.0%
ATTAGTTAAGCATGTTTCCG+AGG - chr5_4:63208049-63208068 Msa0863460:intron 35.0%
TGAAGGCTTGGAAAATAAGA+TGG - chr5_4:63208136-63208155 Msa0863460:intron 35.0%
AAACTGCAAATTGCAACTCA+GGG + chr5_4:63208163-63208182 None:intergenic 35.0%
GATGATATGACTTTGGACAA+CGG + chr5_4:63208190-63208209 None:intergenic 35.0%
CATTTGCGATGATATGACTT+TGG + chr5_4:63208197-63208216 None:intergenic 35.0%
!! ACATTGATGATGTTGCAACA+AGG - chr5_4:63208334-63208353 Msa0863460:intron 35.0%
!! CATTGATGATGTTGCAACAA+GGG - chr5_4:63208335-63208354 Msa0863460:intron 35.0%
GTAGGCTTCATCTTCTTATT+AGG + chr5_4:63208583-63208602 None:intergenic 35.0%
! TTGCTGCCAATTTTACTAGA+AGG + chr5_4:63208700-63208719 None:intergenic 35.0%
GTAGGCTTCATCTTCTTATT+AGG + chr5_4:63208583-63208602 None:intergenic 35.0%
! TTGCTGCCAATTTTACTAGA+AGG + chr5_4:63208700-63208719 None:intergenic 35.0%
! TTGCTGCCAATTTTACTAGA+AGG + chr5_4:63208700-63208719 None:intergenic 35.0%
AAACTGCCTTCTAGCAAAAT+TGG - chr5_4:63209402-63209421 Msa0863460:intron 35.0%
!! GTTGGCTTTGTTAAATCATC+TGG - chr5_4:63209582-63209601 Msa0863460:intron 35.0%
!!! AGTTTTAGAAGGCAGTTTTC+CGG + chr5_4:63209637-63209656 None:intergenic 35.0%
TCTACTGAAAAGATCGTATC+TGG - chr5_4:63209669-63209688 Msa0863460:intron 35.0%
TTCAGATATTTCAAGGACAC+CGG - chr5_4:63209692-63209711 Msa0863460:CDS 35.0%
CTTGACATTTCCTTTGATTC+CGG + chr5_4:63209714-63209733 None:intergenic 35.0%
AATGTCAAGTAAGTGTGTGA+CGG - chr5_4:63209725-63209744 Msa0863460:CDS 35.0%
! CTTTTCAGACGAATTCTTTG+AGG + chr5_4:63209763-63209782 None:intergenic 35.0%
CTCAAAGAATTCGTCTGAAA+AGG - chr5_4:63209761-63209780 Msa0863460:CDS 35.0%
TTCAGATATTTCAAGGAACC+CGG - chr5_4:63209794-63209813 Msa0863460:intron 35.0%
ATCCCAAGTACATAAGCTAA+CGG + chr5_4:63210275-63210294 None:intergenic 35.0%
AGCTAGATCCTCAATATTGT+TGG - chr5_4:63210333-63210352 Msa0863460:CDS 35.0%
TAGATCCTCAATATTGTTGG+AGG - chr5_4:63210336-63210355 Msa0863460:CDS 35.0%
AGATCCTCAATATTGTTGGA+GGG - chr5_4:63210337-63210356 Msa0863460:CDS 35.0%
TAAACAAAAAGTCATAGCCC+AGG - chr5_4:63210444-63210463 Msa0863460:CDS 35.0%
GTTGGCTGCTGAAAATATTA+TGG - chr5_4:63210492-63210511 Msa0863460:CDS 35.0%
GCTGCTGAAAATATTATGGA+TGG - chr5_4:63210496-63210515 Msa0863460:CDS 35.0%
TATTATGGATGGTGATTCTG+GGG - chr5_4:63210507-63210526 Msa0863460:CDS 35.0%
AGAAAGGCAATTGAAAAGCA+TGG - chr5_4:63210709-63210728 Msa0863460:intron 35.0%
CAAAAAAGCTTGAAAGGAAC+AGG + chr5_4:63210929-63210948 None:intergenic 35.0%
TACGGTTTGTGAGAGAGAAT+GGG + chr5_4:63203638-63203657 None:intergenic 40.0%
TTACGGTTTGTGAGAGAGAA+TGG + chr5_4:63203639-63203658 None:intergenic 40.0%
AGTTTCATCCCTTAATGTCG+TGG + chr5_4:63203876-63203895 None:intergenic 40.0%
GGATGAAACTGAAGCTGAAA+TGG - chr5_4:63203886-63203905 Msa0863460:CDS 40.0%
TATCATCTCGAAGACAACGA+TGG - chr5_4:63203935-63203954 Msa0863460:CDS 40.0%
! GTTTAAATGGAGCGCTTCTA+AGG - chr5_4:63203985-63204004 Msa0863460:CDS 40.0%
TTGCATGGATCTGCTGATAA+TGG - chr5_4:63204049-63204068 Msa0863460:CDS 40.0%
TGCATGGATCTGCTGATAAT+GGG - chr5_4:63204050-63204069 Msa0863460:CDS 40.0%
GCATGGAAGTTTGATCTAAC+TGG - chr5_4:63204100-63204119 Msa0863460:CDS 40.0%
TTTCGACAACAACGATACCT+CGG + chr5_4:63204134-63204153 None:intergenic 40.0%
!!! TTTTTGGAGCAACATGTGCA+AGG - chr5_4:63204276-63204295 Msa0863460:intron 40.0%
TGTGCAAGGATAAGGATTTG+AGG - chr5_4:63204290-63204309 Msa0863460:intron 40.0%
! ATTTAGTATTTGGGGCCGTT+TGG - chr5_4:63204348-63204367 Msa0863460:intron 40.0%
ATGATTGACTGACAGAGTGA+CGG + chr5_4:63204547-63204566 None:intergenic 40.0%
TGGGTTTAAGCCTTCACAAA+AGG - chr5_4:63204732-63204751 Msa0863460:CDS 40.0%
! ATTTTGAATGGGATGGTGTC+TGG - chr5_4:63205214-63205233 Msa0863460:CDS 40.0%
TGGCAAGACTCAATAGACTT+CGG - chr5_4:63205234-63205253 Msa0863460:CDS 40.0%
AAGACTCAATAGACTTCGGA+CGG - chr5_4:63205238-63205257 Msa0863460:CDS 40.0%
! GGTAATTTGTGTGTGGTTAC+TGG - chr5_4:63205270-63205289 Msa0863460:CDS 40.0%
!! CATTGTTATTTGAGTGGGAG+AGG - chr5_4:63205317-63205336 Msa0863460:CDS 40.0%
! CAGCTTTTGCTCTCAGTTTT+AGG - chr5_4:63205857-63205876 Msa0863460:CDS 40.0%
!! GCTTTTGCTCTCAGTTTTAG+GGG - chr5_4:63205859-63205878 Msa0863460:CDS 40.0%
ATCAGATGGTTTCTGATACC+CGG + chr5_4:63205891-63205910 None:intergenic 40.0%
GTATCAGAAACCATCTGATG+AGG - chr5_4:63205892-63205911 Msa0863460:CDS 40.0%
ATGCAACAAACCTCATCAGA+TGG + chr5_4:63205905-63205924 None:intergenic 40.0%
! TTTTGTGCATTGTGCGACAA+TGG - chr5_4:63206120-63206139 Msa0863460:CDS 40.0%
GGTACAAAATGCTAATGCAC+TGG - chr5_4:63206287-63206306 Msa0863460:intron 40.0%
GGTCCCACTAAATTTATGTG+GGG + chr5_4:63206442-63206461 None:intergenic 40.0%
GGGTCCCACTAAATTTATGT+GGG + chr5_4:63206443-63206462 None:intergenic 40.0%
TGGGTCCCACTAAATTTATG+TGG + chr5_4:63206444-63206463 None:intergenic 40.0%
CAAATTTCTTGCAGGTGTGA+TGG - chr5_4:63206718-63206737 Msa0863460:intron 40.0%
GAGGTCATTTCATGCTACTA+AGG - chr5_4:63206750-63206769 Msa0863460:intron 40.0%
GTCATTTCATGCTACTAAGG+CGG - chr5_4:63206753-63206772 Msa0863460:intron 40.0%
GCCTGTTGCAAAATAATTGC+AGG - chr5_4:63206905-63206924 Msa0863460:intron 40.0%
TGAAATAAACCATCCAGTCC+AGG - chr5_4:63207258-63207277 Msa0863460:intron 40.0%
GAAATAAACCATCCAGTCCA+GGG - chr5_4:63207259-63207278 Msa0863460:intron 40.0%
!! TGGTTTGTTGAATGGGAAGT+GGG + chr5_4:63207350-63207369 None:intergenic 40.0%
ACTTCCCATTCAACAAACCA+GGG - chr5_4:63207350-63207369 Msa0863460:intron 40.0%
! CGTGCATGTTTGGGATATAT+GGG + chr5_4:63207409-63207428 None:intergenic 40.0%
! ACGTGCATGTTTGGGATATA+TGG + chr5_4:63207410-63207429 None:intergenic 40.0%
AAGATTCGACGTGCATGTTT+GGG + chr5_4:63207418-63207437 None:intergenic 40.0%
AAAGATTCGACGTGCATGTT+TGG + chr5_4:63207419-63207438 None:intergenic 40.0%
TTCATGTAGCAGTTAGCAGA+AGG - chr5_4:63207504-63207523 Msa0863460:CDS 40.0%
TCATGTAGCAGTTAGCAGAA+GGG - chr5_4:63207505-63207524 Msa0863460:CDS 40.0%
TGATTGTGCGATACCTCATT+CGG - chr5_4:63207581-63207600 Msa0863460:intron 40.0%
!!! CGACAGTTTTTGAGTAGTTG+AGG - chr5_4:63207716-63207735 Msa0863460:CDS 40.0%
GGTATTCTTTCAAGCACAAG+AGG + chr5_4:63207749-63207768 None:intergenic 40.0%
AGTGCATTGTAGGAAAACGA+TGG + chr5_4:63207792-63207811 None:intergenic 40.0%
!! ATTTTGAGAATCCCCCTTTC+AGG - chr5_4:63207968-63207987 Msa0863460:intron 40.0%
CAGACGCAGCAAAAATGAAT+TGG + chr5_4:63208116-63208135 None:intergenic 40.0%
CAAACTGCAAATTGCAACTC+AGG + chr5_4:63208164-63208183 None:intergenic 40.0%
! AGTTACACAGGGCATTAACA+AGG + chr5_4:63208446-63208465 None:intergenic 40.0%
GAACACTATATCTAGTGTCG+GGG + chr5_4:63208546-63208565 None:intergenic 40.0%
CGAACACTATATCTAGTGTC+GGG + chr5_4:63208547-63208566 None:intergenic 40.0%
CCGAACACTATATCTAGTGT+CGG + chr5_4:63208548-63208567 None:intergenic 40.0%
CCGACACTAGATATAGTGTT+CGG - chr5_4:63208545-63208564 Msa0863460:intron 40.0%
CGACACTAGATATAGTGTTC+GGG - chr5_4:63208546-63208565 Msa0863460:intron 40.0%
ATGAAGCCTACAACTACAGA+GGG - chr5_4:63208592-63208611 Msa0863460:intron 40.0%
GAACACTATATCTAGTGTCG+GGG + chr5_4:63208546-63208565 None:intergenic 40.0%
CGAACACTATATCTAGTGTC+GGG + chr5_4:63208547-63208566 None:intergenic 40.0%
CCGAACACTATATCTAGTGT+CGG + chr5_4:63208548-63208567 None:intergenic 40.0%
CCGACACTAGATATAGTGTT+CGG - chr5_4:63208545-63208564 Msa0863460:intron 40.0%
CGACACTAGATATAGTGTTC+GGG - chr5_4:63208546-63208565 Msa0863460:intron 40.0%
ATGAAGCCTACAACTACAGA+GGG - chr5_4:63208592-63208611 Msa0863460:intron 40.0%
!! AGTATTGATTTCCGGAACAG+TGG + chr5_4:63209034-63209053 None:intergenic 40.0%
!! GTTGGCTCTGTTAAATCATC+TGG - chr5_4:63209108-63209127 Msa0863460:intron 40.0%
!! AGTATTGATTTCCGGAACAG+TGG + chr5_4:63209034-63209053 None:intergenic 40.0%
!! GTTGGCTCTGTTAAATCAAC+TGG - chr5_4:63209345-63209364 Msa0863460:intron 40.0%
! TTGCTGCCAATTTTGCTAGA+AGG + chr5_4:63209411-63209430 None:intergenic 40.0%
! CAGCAAAAAGTCCTTTGAAG+AGG - chr5_4:63209425-63209444 Msa0863460:intron 40.0%
TCAACTCTCTCTGTAGATGT+AGG + chr5_4:63209549-63209568 None:intergenic 40.0%
GCACATAGATCTAATGTGAC+CGG - chr5_4:63209615-63209634 Msa0863460:intron 40.0%
!! GGAAAACTGCCTTCTAAAAC+TGG - chr5_4:63209636-63209655 Msa0863460:intron 40.0%
!!! GTGCTTTTTTACCTCACACT+TGG + chr5_4:63209964-63209983 None:intergenic 40.0%
CACACAATTTCTGACCAGTT+GGG + chr5_4:63209986-63210005 None:intergenic 40.0%
! CCTGATTGTCGTGCTTTATT+TGG + chr5_4:63210031-63210050 None:intergenic 40.0%
CCAAATAAAGCACGACAATC+AGG - chr5_4:63210028-63210047 Msa0863460:intron 40.0%
!! TGGATGCTGATTCAGAGAAA+GGG - chr5_4:63210111-63210130 Msa0863460:intron 40.0%
CACTACAATGCGGTTATCTT+TGG - chr5_4:63210219-63210238 Msa0863460:CDS 40.0%
! TTGCCGTTAGCTTATGTACT+TGG - chr5_4:63210269-63210288 Msa0863460:CDS 40.0%
! TGCCGTTAGCTTATGTACTT+GGG - chr5_4:63210270-63210289 Msa0863460:CDS 40.0%
AATCCACAAAACTGCACACA+AGG + chr5_4:63210303-63210322 None:intergenic 40.0%
AGGATAAGGCCATTACAATG+AGG - chr5_4:63210392-63210411 Msa0863460:CDS 40.0%
ATCCAGCTTCCTCATTGTAA+TGG + chr5_4:63210404-63210423 None:intergenic 40.0%
AAATTTGCACCCATCCATTC+AGG - chr5_4:63210814-63210833 Msa0863460:intron 40.0%
! TCGGAGAAAGAGTGCGAAAA+AGG + chr5_4:63203587-63203606 None:intergenic 45.0%
! TGGGTTGCAGACGATTTTCA+TGG - chr5_4:63204069-63204088 Msa0863460:CDS 45.0%
! GTTGCAGACGATTTTCATGG+AGG - chr5_4:63204072-63204091 Msa0863460:CDS 45.0%
TCTAACTGGTATGAAACCCG+AGG - chr5_4:63204114-63204133 Msa0863460:CDS 45.0%
TTCGACAACAACGATACCTC+GGG + chr5_4:63204133-63204152 None:intergenic 45.0%
GAGCAACATGTGCAAGGATA+AGG - chr5_4:63204282-63204301 Msa0863460:intron 45.0%
!! TATCAACGAGAGTGCCTGTT+TGG + chr5_4:63204510-63204529 None:intergenic 45.0%
AGACTCAATAGACTTCGGAC+GGG - chr5_4:63205239-63205258 Msa0863460:CDS 45.0%
!!! TCAGTTTTAGGGGACAAGTC+CGG - chr5_4:63205869-63205888 Msa0863460:CDS 45.0%
TTTCATGCTACTAAGGCGGA+TGG - chr5_4:63206757-63206776 Msa0863460:intron 45.0%
CAGCATCAATGCTTTGCATG+TGG - chr5_4:63206966-63206985 Msa0863460:intron 45.0%
TTGTTGAATGGGAAGTGGGT+TGG + chr5_4:63207346-63207365 None:intergenic 45.0%
!! CTGGTTTGTTGAATGGGAAG+TGG + chr5_4:63207351-63207370 None:intergenic 45.0%
CACTTCCCATTCAACAAACC+AGG - chr5_4:63207349-63207368 Msa0863460:intron 45.0%
CTTCCCATTCAACAAACCAG+GGG - chr5_4:63207351-63207370 Msa0863460:intron 45.0%
!! TCACCCCTGGTTTGTTGAAT+GGG + chr5_4:63207357-63207376 None:intergenic 45.0%
!! TTCACCCCTGGTTTGTTGAA+TGG + chr5_4:63207358-63207377 None:intergenic 45.0%
GGGATATATGTATTCACCCC+TGG + chr5_4:63207370-63207389 None:intergenic 45.0%
TGGGATTCCCCTTCTCATTT+GGG + chr5_4:63207390-63207409 None:intergenic 45.0%
ATGGGATTCCCCTTCTCATT+TGG + chr5_4:63207391-63207410 None:intergenic 45.0%
TTCTTTGTCCTTCTTGGCGT+TGG - chr5_4:63207445-63207464 Msa0863460:intron 45.0%
CATGTAGCAGTTAGCAGAAG+GGG - chr5_4:63207506-63207525 Msa0863460:CDS 45.0%
ATGTAGCAGTTAGCAGAAGG+GGG - chr5_4:63207507-63207526 Msa0863460:CDS 45.0%
CAGAAGGGGGGTAGAAAATT+GGG - chr5_4:63207520-63207539 Msa0863460:CDS 45.0%
AGAAGGGGGGTAGAAAATTG+GGG - chr5_4:63207521-63207540 Msa0863460:CDS 45.0%
CTACTCAAAAACTGTCGGCA+AGG + chr5_4:63207713-63207732 None:intergenic 45.0%
! ACATCACAGGAGTGCATTGT+AGG + chr5_4:63207802-63207821 None:intergenic 45.0%
TGGATGATAGAAACGGTCAC+AGG + chr5_4:63208015-63208034 None:intergenic 45.0%
ACTAATGGGGCAATGCAATG+TGG + chr5_4:63208035-63208054 None:intergenic 45.0%
! CATTTTTGCTGCGTCTGTGA+AGG - chr5_4:63208119-63208138 Msa0863460:intron 45.0%
ATGATGTTGCAACAAGGGCT+TGG - chr5_4:63208340-63208359 Msa0863460:intron 45.0%
TGATGTTGCAACAAGGGCTT+GGG - chr5_4:63208341-63208360 Msa0863460:intron 45.0%
CATGAGATCAGTGATGAGCT+TGG - chr5_4:63208493-63208512 Msa0863460:intron 45.0%
GATGAAGCCTACAACTACAG+AGG - chr5_4:63208591-63208610 Msa0863460:intron 45.0%
TGAAGCCTACAACTACAGAG+GGG - chr5_4:63208593-63208612 Msa0863460:CDS 45.0%
TTAACCCCCTCTGTAGTTGT+AGG + chr5_4:63208601-63208620 None:intergenic 45.0%
! GCAGAAGGATCTAAAGTGAC+TGG - chr5_4:63208667-63208686 Msa0863460:intron 45.0%
ATTGGCAGCAAAAAGTCCTC+TGG - chr5_4:63208709-63208728 Msa0863460:intron 45.0%
AGGAGTCTCAAGCTTATCAC+TGG + chr5_4:63208740-63208759 None:intergenic 45.0%
GATGAAGCCTACAACTACAG+AGG - chr5_4:63208591-63208610 Msa0863460:intron 45.0%
TGAAGCCTACAACTACAGAG+GGG - chr5_4:63208593-63208612 Msa0863460:CDS 45.0%
TTAACCCCCTCTGTAGTTGT+AGG + chr5_4:63208601-63208620 None:intergenic 45.0%
! GCAGAAGGATCTAAAGTGAC+TGG - chr5_4:63208667-63208686 Msa0863460:intron 45.0%
ATTGGCAGCAAAAAGTCCTC+TGG - chr5_4:63208709-63208728 Msa0863460:intron 45.0%
AGGAGTCTCAAGCTTATCAC+TGG + chr5_4:63208740-63208759 None:intergenic 45.0%
TCAACGCTCTCTGTAGTTGT+AGG + chr5_4:63209075-63209094 None:intergenic 45.0%
! GCAGAAGGATCTAAAGTGAC+TGG - chr5_4:63208667-63208686 Msa0863460:intron 45.0%
! CAGCAAAAAGTCCTCTGAAG+AGG - chr5_4:63209188-63209207 Msa0863460:intron 45.0%
AGGAGTCTCAAGCTTATCAC+TGG + chr5_4:63208740-63208759 None:intergenic 45.0%
TCAACGCTCTCTGTAGTTGT+AGG + chr5_4:63209075-63209094 None:intergenic 45.0%
! GCAGAAGGATCTAAAGTGAC+TGG - chr5_4:63208667-63208686 Msa0863460:intron 45.0%
! CTTATCACTGGCCTCTTCAA+AGG + chr5_4:63209439-63209458 None:intergenic 45.0%
AGGAGTCTCAAGCTTATCAC+TGG + chr5_4:63208740-63208759 None:intergenic 45.0%
TTCAAGGACACCGGAATCAA+AGG - chr5_4:63209701-63209720 Msa0863460:CDS 45.0%
TTGTCTGGGAAGGTGATTTC+TGG - chr5_4:63209867-63209886 Msa0863460:intron 45.0%
TTTACCTCACACTTGGCCAT+TGG + chr5_4:63209957-63209976 None:intergenic 45.0%
!! GAGGTAAAAAAGCACCCAAC+TGG - chr5_4:63209969-63209988 Msa0863460:intron 45.0%
GCACACAATTTCTGACCAGT+TGG + chr5_4:63209987-63210006 None:intergenic 45.0%
AGGTCGACGATGCAGATAAT+CGG - chr5_4:63210048-63210067 Msa0863460:intron 45.0%
TCTAACAGGCATGATCGACA+GGG + chr5_4:63210075-63210094 None:intergenic 45.0%
TTCTAACAGGCATGATCGAC+AGG + chr5_4:63210076-63210095 None:intergenic 45.0%
GGAGGCAATACACTTCTAAC+AGG + chr5_4:63210089-63210108 None:intergenic 45.0%
! TAGAAGTGTATTGCCTCCAC+TGG - chr5_4:63210091-63210110 Msa0863460:intron 45.0%
TTCTCTGAATCAGCATCCAG+TGG + chr5_4:63210110-63210129 None:intergenic 45.0%
!! CTGGATGCTGATTCAGAGAA+AGG - chr5_4:63210110-63210129 Msa0863460:intron 45.0%
! GTTCCTTGTGTGCAGTTTTG+TGG - chr5_4:63210297-63210316 Msa0863460:CDS 45.0%
CACACCCTCCAACAATATTG+AGG + chr5_4:63210344-63210363 None:intergenic 45.0%
GTTGGGAGATGTTGAGGATA+AGG - chr5_4:63210378-63210397 Msa0863460:CDS 45.0%
TCACATGTACGGTGACAAGT+TGG - chr5_4:63210474-63210493 Msa0863460:CDS 45.0%
!! CATTATTTATAATATATTTA+AGG - chr5_4:63206003-63206022 Msa0863460:intron 5.0%
!! TGAAATATTAAAAAAAAATT+AGG + chr5_4:63206682-63206701 None:intergenic 5.0%
GGATCAAGCTTCAGAAACCG+AGG - chr5_4:63204164-63204183 Msa0863460:CDS 50.0%
!! ACGAGAGTGCCTGTTTGGAT+TGG + chr5_4:63204505-63204524 None:intergenic 50.0%
CCTTAAGTGGTGTTCGTGTG+CGG - chr5_4:63204996-63205015 Msa0863460:CDS 50.0%
GACTTCGGACGGGTCTTTAT+CGG - chr5_4:63205249-63205268 Msa0863460:CDS 50.0%
!!! CAGTTTTAGGGGACAAGTCC+GGG - chr5_4:63205870-63205889 Msa0863460:CDS 50.0%
TGTGCATTGTGCGACAATGG+CGG - chr5_4:63206123-63206142 Msa0863460:CDS 50.0%
ATAAACCATCCAGTCCAGGG+AGG - chr5_4:63207262-63207281 Msa0863460:intron 50.0%
CTTCAATCACCTATCCTCCC+TGG + chr5_4:63207279-63207298 None:intergenic 50.0%
!! GTGGGTTGGCTAGATGATGA+GGG + chr5_4:63207332-63207351 None:intergenic 50.0%
!! AGTGGGTTGGCTAGATGATG+AGG + chr5_4:63207333-63207352 None:intergenic 50.0%
TGTAGCAGTTAGCAGAAGGG+GGG - chr5_4:63207508-63207527 Msa0863460:CDS 50.0%
GCAGAAGGGGGGTAGAAAAT+TGG - chr5_4:63207519-63207538 Msa0863460:CDS 50.0%
GAAGGGGGGTAGAAAATTGG+GGG - chr5_4:63207522-63207541 Msa0863460:CDS 50.0%
AAGGGGGGTAGAAAATTGGG+GGG - chr5_4:63207523-63207542 Msa0863460:CDS 50.0%
GAGGATACGAGTTGCCATGT+AGG - chr5_4:63207551-63207570 Msa0863460:CDS 50.0%
GAAGCCTACAACTACAGAGG+GGG - chr5_4:63208594-63208613 Msa0863460:CDS 50.0%
!! TCTGACAAGAGCACTGCAGA+AGG - chr5_4:63208652-63208671 Msa0863460:intron 50.0%
! CTTATCACTGGTCTCTCCAG+AGG + chr5_4:63208728-63208747 None:intergenic 50.0%
GAAGCCTACAACTACAGAGG+GGG - chr5_4:63208594-63208613 Msa0863460:CDS 50.0%
!! TCTGACAAGAGCACTGCAGA+AGG - chr5_4:63208652-63208671 Msa0863460:intron 50.0%
! CTTATCACTGGTCTCTCCAG+AGG + chr5_4:63208728-63208747 None:intergenic 50.0%
!! TCTGGCAAGAGCATTGCAGA+AGG - chr5_4:63209126-63209145 Msa0863460:intron 50.0%
! CTTATCACTGGCCTCTTCAG+AGG + chr5_4:63209202-63209221 None:intergenic 50.0%
!! ACTGGCAAGAGCATTGCAGA+AGG - chr5_4:63209363-63209382 Msa0863460:intron 50.0%
!! GAACAGTAGCTCTAGTGTCG+GGG + chr5_4:63209494-63209513 None:intergenic 50.0%
!! GGAACAGTAGCTCTAGTGTC+GGG + chr5_4:63209495-63209514 None:intergenic 50.0%
!! CGGAACAGTAGCTCTAGTGT+CGG + chr5_4:63209496-63209515 None:intergenic 50.0%
CGACACTAGAGCTACTGTTC+CGG - chr5_4:63209494-63209513 Msa0863460:intron 50.0%
TCTGAATCAGCATCCAGTGG+AGG + chr5_4:63210107-63210126 None:intergenic 50.0%
! GCACAAGTTGGGAGATGTTG+AGG - chr5_4:63210372-63210391 Msa0863460:CDS 50.0%
GGCCATTACAATGAGGAAGC+TGG - chr5_4:63210399-63210418 Msa0863460:CDS 50.0%
AAAGTCATAGCCCAGGAGCA+TGG - chr5_4:63210451-63210470 Msa0863460:CDS 50.0%
GTACATGTGACCATGCTCCT+GGG + chr5_4:63210464-63210483 None:intergenic 50.0%
! CAGGAGCATGGTCACATGTA+CGG - chr5_4:63210463-63210482 Msa0863460:CDS 50.0%
! ACATGATGGTAACGCTGACC+AGG - chr5_4:63210606-63210625 Msa0863460:CDS 50.0%
CCTGTTTGTCTTGAGTCTCC+TGG + chr5_4:63210627-63210646 None:intergenic 50.0%
CCAGGAGACTCAAGACAAAC+AGG - chr5_4:63210624-63210643 Msa0863460:CDS 50.0%
TTTGCACCCATCCATTCAGG+TGG - chr5_4:63210817-63210836 Msa0863460:intron 50.0%
AGCCAACCACCTGAATGGAT+GGG + chr5_4:63210826-63210845 None:intergenic 50.0%
CCGCACACGAACACCACTTA+AGG + chr5_4:63204999-63205018 None:intergenic 55.0%
! GGTGTGATGGAGCATGCATG+AGG - chr5_4:63206731-63206750 Msa0863460:intron 55.0%
ATGCTACTAAGGCGGATGGC+AGG - chr5_4:63206761-63206780 Msa0863460:intron 55.0%
TGCTACTAAGGCGGATGGCA+GGG - chr5_4:63206762-63206781 Msa0863460:intron 55.0%
ATGCTTTGCATGTGGCGAGC+TGG - chr5_4:63206974-63206993 Msa0863460:intron 55.0%
TGCTTTGCATGTGGCGAGCT+GGG - chr5_4:63206975-63206994 Msa0863460:intron 55.0%
ATCACCTATCCTCCCTGGAC+TGG + chr5_4:63207274-63207293 None:intergenic 55.0%
!! GTCCTTCTTGGCGTTGGTTG+AGG - chr5_4:63207451-63207470 Msa0863460:intron 55.0%
AGCCTCAACCAACGCCAAGA+AGG + chr5_4:63207456-63207475 None:intergenic 55.0%
GGGGTAGAAAATTGGGGGGA+GGG - chr5_4:63207527-63207546 Msa0863460:CDS 55.0%
AGAAAATTGGGGGGAGGGAG+AGG - chr5_4:63207532-63207551 Msa0863460:CDS 55.0%
TTGCTGCGTCTGTGAAGGCT+TGG - chr5_4:63208124-63208143 Msa0863460:intron 55.0%
GTTGCAACAAGGGCTTGGGA+AGG - chr5_4:63208345-63208364 Msa0863460:intron 55.0%
!! GAACAGTGGCTCTAGTGTCG+GGG + chr5_4:63209020-63209039 None:intergenic 55.0%
!! GGAACAGTGGCTCTAGTGTC+GGG + chr5_4:63209021-63209040 None:intergenic 55.0%
!! CGGAACAGTGGCTCTAGTGT+CGG + chr5_4:63209022-63209041 None:intergenic 55.0%
CGACACTAGAGCCACTGTTC+CGG - chr5_4:63209020-63209039 Msa0863460:intron 55.0%
!! GAACAGTGGCTCTAGTGTCG+GGG + chr5_4:63209020-63209039 None:intergenic 55.0%
!! GGAACAGTGGCTCTAGTGTC+GGG + chr5_4:63209021-63209040 None:intergenic 55.0%
!! CGGAACAGTGGCTCTAGTGT+CGG + chr5_4:63209022-63209041 None:intergenic 55.0%
CGACACTAGAGCCACTGTTC+CGG - chr5_4:63209020-63209039 Msa0863460:intron 55.0%
CAAGCCAATGGCCAAGTGTG+AGG - chr5_4:63209950-63209969 Msa0863460:intron 55.0%
CGTACATGTGACCATGCTCC+TGG + chr5_4:63210465-63210484 None:intergenic 55.0%
CGAGTAGCTGCAAAACGAGC+TGG + chr5_4:63210763-63210782 None:intergenic 55.0%
CACCCATCCATTCAGGTGGT+TGG - chr5_4:63210821-63210840 Msa0863460:intron 55.0%
GAGCCAACCACCTGAATGGA+TGG + chr5_4:63210827-63210846 None:intergenic 55.0%
CTTCGAGCCAACCACCTGAA+TGG + chr5_4:63210831-63210850 None:intergenic 55.0%
! CCTATCCTCCCTGGACTGGA+TGG + chr5_4:63207270-63207289 None:intergenic 60.0%
CCATCCAGTCCAGGGAGGAT+AGG - chr5_4:63207267-63207286 Msa0863460:intron 60.0%
GGGGGTAGAAAATTGGGGGG+AGG - chr5_4:63207526-63207545 Msa0863460:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 63203517 63210989 63203517 ID=Msa0863460;Name=Msa0863460
chr5_4 mRNA 63203517 63210989 63203517 ID=Msa0863460-mRNA-1;Parent=Msa0863460;Name=Msa0863460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=182|0.9|0.72|1|0.9|0.81|11|134|1134
chr5_4 exon 63203517 63204194 63203517 ID=Msa0863460-mRNA-1:exon:19915;Parent=Msa0863460-mRNA-1
chr5_4 exon 63204374 63206017 63204374 ID=Msa0863460-mRNA-1:exon:19914;Parent=Msa0863460-mRNA-1
chr5_4 exon 63206103 63206218 63206103 ID=Msa0863460-mRNA-1:exon:19913;Parent=Msa0863460-mRNA-1
chr5_4 exon 63206328 63206516 63206328 ID=Msa0863460-mRNA-1:exon:19912;Parent=Msa0863460-mRNA-1
chr5_4 exon 63207481 63207579 63207481 ID=Msa0863460-mRNA-1:exon:19911;Parent=Msa0863460-mRNA-1
chr5_4 exon 63207678 63207774 63207678 ID=Msa0863460-mRNA-1:exon:19910;Parent=Msa0863460-mRNA-1
chr5_4 exon 63208349 63208461 63208349 ID=Msa0863460-mRNA-1:exon:19909;Parent=Msa0863460-mRNA-1
chr5_4 exon 63208593 63208646 63208593 ID=Msa0863460-mRNA-1:exon:19908;Parent=Msa0863460-mRNA-1
chr5_4 exon 63209684 63209780 63209684 ID=Msa0863460-mRNA-1:exon:19907;Parent=Msa0863460-mRNA-1
chr5_4 exon 63210195 63210665 63210195 ID=Msa0863460-mRNA-1:exon:19906;Parent=Msa0863460-mRNA-1
chr5_4 exon 63210827 63210989 63210827 ID=Msa0863460-mRNA-1:exon:19905;Parent=Msa0863460-mRNA-1
chr5_4 five_prime_UTR 63210827 63210989 63210827 ID=Msa0863460-mRNA-1:five_prime_utr;Parent=Msa0863460-mRNA-1
chr5_4 five_prime_UTR 63210647 63210665 63210647 ID=Msa0863460-mRNA-1:five_prime_utr;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63210195 63210646 63210195 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63209684 63209780 63209684 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63208593 63208646 63208593 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63208349 63208461 63208349 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63207678 63207774 63207678 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63207481 63207579 63207481 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63206328 63206516 63206328 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63206103 63206218 63206103 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63204374 63206017 63204374 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 CDS 63203651 63204194 63203651 ID=Msa0863460-mRNA-1:cds;Parent=Msa0863460-mRNA-1
chr5_4 three_prime_UTR 63203517 63203650 63203517 ID=Msa0863460-mRNA-1:three_prime_utr;Parent=Msa0863460-mRNA-1
Gene Sequence

>Msa0863460

ATGAAAAGGAAATCCACGACATTAAGGGATGAAACTGAAGCTGAAATGGAGTTTCAGTCTCTGTATGTAACGAATTATCATCTCGAAGACAACGATGGCGAACCTGTGTGTTTTTCTGTTTTACCGTTTAAATGGAGCGCTTCTAAGGTTTCCAAAGTTGATGATAGCGAAAAGGGGTTGAAGATATTTTTGCATGGATCTGCTGATAATGGGTTGCAGACGATTTTCATGGAGGTTATTGCATGGAAGTTTGATCTAACTGGTATGAAACCCGAGGTATCGTTGTTGTCGAAAGATAAAAGGTGGATCAAGCTTCAGAAACCGAGGAAAAGCTTTCAGAAAACTGTGAAAACTGCTTTGATTACGCTCTATTTTCTTCGTTGTGCTAAGAAAAATCCTCGATTATCTGTTGAGTCTTTTTGGAGCAACATGTGCAAGGATAAGGATTTGAGCTCTTATGGGTTTAAGCCTTCACAAAAGGATTTATTGGATCATATGTCTCTGATTGGTGAAGCAACTACAAGAGATATTGGCTTAGCTAATTCTAAGCTTTTGCTCTCAGTTTTAGGGGACAAGTCCGGGTATCAGAAACCATCTGATGAGGAATTTGATACTAACAATGATATCATAGAAGAATCTGATGAAGACTCAAAAGTAGAGGATGATTTGTTTGATTCTTTTTGTGCATTGTGCGACAATGGCGGTAATCTCATTATGTGTGATGGAGCATGCATGAGGTCATTTCATGCTACTAAGGCGGATGGCAGGGAATCTTTATGTGATTCTCTTGGTTTTACCAAGAAGGAAGTTGATGATATTGAGACGTTTTATTGTAAGAATTGTGAATATCGTCAGCATCAATGCTTTGCATGTGGCGAGCTGGGTTCTTCTGATAAAGATAAGGATGCTGAGGTCTTTAAATGTGCTTCTGAAACCTGTGACCGTTTCTATCATCCACATTGCATTGCCCCATTAGTTAAGCATGTTTCCGAGGATCTTGAGAAAAATAATGCTGAGGGGCAGACATTTTCTTGTCCAATTCATTTTTGCTGCGTCTGTGAAGGCTTGGAAAATAAGATGGACCCTGAGTTGCAATTTGCAGGGGTTGATTCTGAAGTTGATTTTGGCAGAGAGATTGCTTTTGATGACATTGATGATGTTGCAACAAGGGCTTGGGAAGGTCTTTTGCCAAACAATCGTATCCTTATATATTGCTTAAATCATGAGATCAGTGATGAGCTTGGGACTCCTGTAAGAGATCATATAAAATTCCCCGACACTAGATATAGTGTTCGGGACATCAATACTCCTAATAAGAAGATGAAGCCTACAACTACAGAGGGGGTTAAATTGAAGAGCAATGTTGACTTTGTTAAATCATCTGACAAGAGCACTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGTAAAATTGGCAGCAAAAAGTCCTCTGGAGAGACCAGTGATAAGCTTGAGACTCCTGTAAGAGATCATATAAAATTCCCCGACACTAGATATAGTGTTCGGGACATCAATACTCCTAATAAGAAGATGAAGCCTACAACTACAGAGGGGGTTAAATTGAAGAGCAATGTTGACTTTGTTAAATCATCTGACAAGAGCACTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGTAAAATTGGCAGCAAAAAGTCCTCTGGAGAGACCAGTGATAAGCTTGAGACTCCTGTAAGAGATCATATAAAATTCCCCGACACTAGAGCCACTGTTCCGGAAATCAATACTTCTAATAAGAGGATGAGTCCTACAACTACAGAGAGCGTTGAATTGAAGAACAATGTTGGCTCTGTTAAATCATCTGGCAAGAGCATTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGTAAAATTGGCAGCAAAAAGTCCTCTGAAGAGGCCAGTGATAAGCTTGAGACTCCTGTAAGAGATCATATAAAATTCCCCGACACTAGAGCCACTGTTCCGGAAATCAATACTTCTAATAAGAGGAAGAGGCCTACAACTACAGAGAGCGTTGAATTGAAGAACAATGTTGGCTCTGTTAAATCAACTGGCAAGAGCATTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGCAAAATTGGCAGCAAAAAGTCCTTTGAAGAGGCCAGTGATAAGCTTGAGACTCCTGTAAGAGATCATATAAAATTCCCCGACACTAGAGCTACTGTTCCGGAAATCAATACTTCTAATAAGAGGATGATGCCTACATCTACAGAGAGAGTTGAATTGAAGAACAATGTTGGCTTTGTTAAATCATCTGGCAAGAGCACTGCACATAGATCTAATGTGACCGGAAAACTGCCTTCTAAAACTGGTAGCAAAAAGTCTACTGAAAAGATCGTATCTGGTTCAGATATTTCAAGGACACCGGAATCAAAGGAAATGTCAAGTAAGTGTGTGACGGAATACAAGTCAACCTCAAAGAATTCGTCTGAAAAGGCGATTTCTTGTTCAGATATTTCAAGGAACCCGGAATCAAATCAAAGAAGTTTGACTGAAGAAAACAAGAAGTCAAATTCAAATTTGTCTGGGAAGGTGATTTCTGGTTCACATATATCAAGTAAACCAAAATCAAATGAAAGATCTGAAACGGTTTTGACTAAAAACAAGCCAATGGCCAAGTGTGAGGTAAAAAAGCACCCAACTGGTCAGAAATTGTGTGCTTCTATGAATAAAGGTTCTGACCAAATAAAGCACGACAATCAGGTCGACGATGCAGATAATCGGACCCTGTCGATCATGCCTGTTAGAAGTGTATTGCCTCCACTGGATGCTGATTCAGAGAAAGGTTTTGTGGATTCGTTTAAAGAAGCTAGATCCTCAATATTGTTGGAGGGTGTGATAAAAAAGCACAAGTTGGGAGATGTTGAGGATAAGGCCATTACAATGAGGAAGCTGGATGACTCAGTTGACTTGACTACTAAACAAAAAGTCATAGCCCAGGAGCATGGTCACATGTACGGTGACAAGTTGGCTGCTGAAAATATTATGGATGGTGATTCTGGGGACAAGCTCATGCCGAATCATGATCTCTTAAAGTCAACTGATCTAGAACCTGTAAATGAAAGTAAGAAAAAAAGCTCACATGATGGTAACGCTGACCAGGAGACTCAAGACAAACAGGAATTTAAGACAAGCAAGTCTTCGAAGACATCTGCGAAGAAAAAACGAATTGATAAAAATGATAGAAAGGCAATTGAAAAGCATGGTCGCGATTCTTCTCATGTCAACAAGCATCCAGCTCGTTTTGCAGCTACTCGTAAATCAAAATTTGGAACTAGTCTCAATGTAAAATTTGCACCCATCCATTCAGGTGGTTGGCTCGAAGAGTAG

Protein sequence

>Msa0863460

MKRKSTTLRDETEAEMEFQSLYVTNYHLEDNDGEPVCFSVLPFKWSASKVSKVDDSEKGLKIFLHGSADNGLQTIFMEVIAWKFDLTGMKPEVSLLSKDKRWIKLQKPRKSFQKTVKTALITLYFLRCAKKNPRLSVESFWSNMCKDKDLSSYGFKPSQKDLLDHMSLIGEATTRDIGLANSKLLLSVLGDKSGYQKPSDEEFDTNNDIIEESDEDSKVEDDLFDSFCALCDNGGNLIMCDGACMRSFHATKADGRESLCDSLGFTKKEVDDIETFYCKNCEYRQHQCFACGELGSSDKDKDAEVFKCASETCDRFYHPHCIAPLVKHVSEDLEKNNAEGQTFSCPIHFCCVCEGLENKMDPELQFAGVDSEVDFGREIAFDDIDDVATRAWEGLLPNNRILIYCLNHEISDELGTPVRDHIKFPDTRYSVRDINTPNKKMKPTTTEGVKLKSNVDFVKSSDKSTAEGSKVTGKLPSSKIGSKKSSGETSDKLETPVRDHIKFPDTRYSVRDINTPNKKMKPTTTEGVKLKSNVDFVKSSDKSTAEGSKVTGKLPSSKIGSKKSSGETSDKLETPVRDHIKFPDTRATVPEINTSNKRMSPTTTESVELKNNVGSVKSSGKSIAEGSKVTGKLPSSKIGSKKSSEEASDKLETPVRDHIKFPDTRATVPEINTSNKRKRPTTTESVELKNNVGSVKSTGKSIAEGSKVTGKLPSSKIGSKKSFEEASDKLETPVRDHIKFPDTRATVPEINTSNKRMMPTSTERVELKNNVGFVKSSGKSTAHRSNVTGKLPSKTGSKKSTEKIVSGSDISRTPESKEMSSKCVTEYKSTSKNSSEKAISCSDISRNPESNQRSLTEENKKSNSNLSGKVISGSHISSKPKSNERSETVLTKNKPMAKCEVKKHPTGQKLCASMNKGSDQIKHDNQVDDADNRTLSIMPVRSVLPPLDADSEKGFVDSFKEARSSILLEGVIKKHKLGDVEDKAITMRKLDDSVDLTTKQKVIAQEHGHMYGDKLAAENIMDGDSGDKLMPNHDLLKSTDLEPVNESKKKSSHDGNADQETQDKQEFKTSKSSKTSAKKKRIDKNDRKAIEKHGRDSSHVNKHPARFAATRKSKFGTSLNVKFAPIHSGGWLEE*