AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0866730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866730 MtrunA17_Chr5g0403421 90.667 225 10 3 1 215 1 224 5.51e-148 421
Msa0866730 MtrunA17_Chr8g0373681 57.991 219 85 4 1 213 1 218 3.06e-81 248
Msa0866730 MtrunA17_Chr6g0460351 34.802 227 104 8 4 210 10 212 6.77e-30 117
Msa0866730 MtrunA17_Chr7g0255081 35.644 202 101 4 33 205 10 211 1.34e-27 110
Msa0866730 MtrunA17_Chr3g0142381 79.245 106 17 3 187 291 412 513 2.33e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866730 AT4G36850.4 58.079 229 76 6 5 213 6 234 1.08e-83 255
Msa0866730 AT4G36850.3 58.079 229 76 6 5 213 6 234 1.08e-83 255
Msa0866730 AT4G36850.2 58.079 229 76 6 5 213 6 234 2.15e-82 254
Msa0866730 AT4G36850.1 58.079 229 76 6 5 213 6 234 6.03e-82 253
Msa0866730 AT2G41050.5 42.771 166 71 4 30 171 9 174 9.66e-31 119
Msa0866730 AT2G41050.1 42.771 166 71 4 30 171 9 174 1.72e-30 118
Msa0866730 AT2G41050.3 42.771 166 71 4 30 171 9 174 1.72e-30 118
Msa0866730 AT4G20100.1 50.000 118 44 4 28 130 2 119 4.31e-28 110

Find 68 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTGCGTCTACCACTTAT+TGG 0.221732 5_4:-68665322 None:intergenic
CTATTGTCTTTCTTCTTACT+TGG 0.227991 5_4:+68662609 Msa0866730:CDS
GATAATATCTCATTCACTTT+TGG 0.252103 5_4:+68662503 Msa0866730:CDS
TTTCTTCTTACTTGGGTTGC+TGG 0.258143 5_4:+68662617 Msa0866730:CDS
CTTCATCAGTTTAATTTGTT+GGG 0.258898 5_4:+68662526 Msa0866730:CDS
CCCGACTCAAATCTTTCTTT+TGG 0.278830 5_4:-68665295 None:intergenic
CCTAGACCGGAATACTACTA+TGG 0.293721 5_4:+68665349 Msa0866730:CDS
GCTTCATCAGTTTAATTTGT+TGG 0.320033 5_4:+68662525 Msa0866730:CDS
ATTATGACTACATCTATAAA+TGG 0.339648 5_4:+68665116 Msa0866730:CDS
TTCTTCTTACTTGGGTTGCT+GGG 0.373449 5_4:+68662618 Msa0866730:CDS
TACCAGAGCTGTGTAGTATT+GGG 0.385386 5_4:-68663896 None:intergenic
TTGCAGAGACATATTCAATC+TGG 0.396365 5_4:+68662730 Msa0866730:intron
CCATAGTAGTATTCCGGTCT+AGG 0.405809 5_4:-68665349 None:intergenic
ATTAGTCTAGGCTGTGTTGC+AGG 0.407858 5_4:-68665585 None:intergenic
AATAGCGAGGATGAAGTTAA+TGG 0.414274 5_4:+68665998 Msa0866730:CDS
TATTGTCTTTCTTCTTACTT+GGG 0.426024 5_4:+68662610 Msa0866730:CDS
AAACAAACCCTGTGTGGGTT+GGG 0.428318 5_4:+68662442 Msa0866730:CDS
ACTTACCCATAGTAGTATTC+CGG 0.431783 5_4:-68665355 None:intergenic
CGAAAATTAGTGATAATTTG+AGG 0.446059 5_4:-68662563 None:intergenic
TTACCAGAGCTGTGTAGTAT+TGG 0.447936 5_4:-68663897 None:intergenic
TTCTGGCAAGGGCCGGGGTA+AGG 0.449517 5_4:+68666057 Msa0866730:CDS
CCAAAAGAAAGATTTGAGTC+GGG 0.464294 5_4:+68665295 Msa0866730:CDS
CAACAGATCAGCAAGATCAT+TGG 0.472846 5_4:+68665449 Msa0866730:intron
GAGTCTGAGGGTAAAGGCTC+TGG 0.474002 5_4:+68666094 Msa0866730:CDS
AAAGGCTCTGGCCGAGGACG+TGG 0.475426 5_4:+68666106 Msa0866730:CDS
TTCATCAGTTTAATTTGTTG+GGG 0.482134 5_4:+68662527 Msa0866730:CDS
ACCCTCAGACTCCGACACTT+TGG 0.484222 5_4:-68666083 None:intergenic
AAAAGTTCTGGCAAGGGCCG+GGG 0.506111 5_4:+68666052 Msa0866730:CDS
TAAGAGCGGACCTTCAGCTA+TGG 0.515449 5_4:+68665515 Msa0866730:CDS
TGAAGTTAATGGTGAGGCTG+AGG 0.529067 5_4:+68666009 Msa0866730:CDS
GAGGGTAAAGGCTCTGGCCG+AGG 0.531410 5_4:+68666100 Msa0866730:CDS
GTGTCGGAGTCTGAGGGTAA+AGG 0.532240 5_4:+68666088 Msa0866730:CDS
AAAACAAACCCTGTGTGGGT+TGG 0.540378 5_4:+68662441 Msa0866730:CDS
ACCAAAAGAAAGATTTGAGT+CGG 0.543067 5_4:+68665294 Msa0866730:CDS
ATCCAAAGTGTCGGAGTCTG+AGG 0.546995 5_4:+68666081 Msa0866730:CDS
AAGAGCGGACCTTCAGCTAT+GGG 0.555520 5_4:+68665516 Msa0866730:CDS
GCAGAGCGCGACCACGTCCT+CGG 0.558606 5_4:-68666117 None:intergenic
AACCCAATACTACACAGCTC+TGG 0.561759 5_4:+68663894 Msa0866730:CDS
ACGCAGAGCAATACCTAGAC+CGG 0.562926 5_4:+68665336 Msa0866730:CDS
CTAGACCGGAATACTACTAT+GGG 0.565170 5_4:+68665350 Msa0866730:CDS
CTCAGAAGAAGAGCAAGAAG+AGG 0.566436 5_4:+68665961 Msa0866730:CDS
GAGTCGGGGATTCCAATAAG+TGG 0.571978 5_4:+68665310 Msa0866730:CDS
ACACTTTGGATGCCTTACCC+CGG 0.579617 5_4:-68666069 None:intergenic
AAGCTGACAGCTCAAAGAAG+AGG 0.584051 5_4:+68665915 Msa0866730:CDS
GCTGAACGAGGGATTAGTCT+AGG 0.585935 5_4:-68665597 None:intergenic
CAAAAGAAAGATTTGAGTCG+GGG 0.586081 5_4:+68665296 Msa0866730:CDS
GACTCGCTCACCGCTGAACG+AGG 0.588397 5_4:-68665609 None:intergenic
TCGTTTAATCCCATAGCTGA+AGG 0.589549 5_4:-68665525 None:intergenic
TTTCGTGCTAAGTCTAGCCA+TGG 0.593278 5_4:+68662581 Msa0866730:CDS
AGATCAGCAAGATCATTGGC+TGG 0.601557 5_4:+68665453 Msa0866730:intron
AGAGCTGTGTAGTATTGGGT+TGG 0.609229 5_4:-68663892 None:intergenic
CTCATGTAAGTACGAGATGG+TGG 0.622152 5_4:-68665486 None:intergenic
CGAGGATGAAGTTAATGGTG+AGG 0.626334 5_4:+68666003 Msa0866730:CDS
GGGTAAGGCATCCAAAGTGT+CGG 0.631380 5_4:+68666072 Msa0866730:CDS
ACTCGCTCACCGCTGAACGA+GGG 0.632917 5_4:-68665608 None:intergenic
TCAAAAGATCAACATCGAAG+AGG 0.638579 5_4:+68665150 Msa0866730:CDS
TCCAAAGTGTCGGAGTCTGA+GGG 0.639192 5_4:+68666082 Msa0866730:CDS
GCAGCCTTCATATTGTGTGA+AGG 0.640804 5_4:+68662418 Msa0866730:CDS
ACTCTCATGTAAGTACGAGA+TGG 0.643838 5_4:-68665489 None:intergenic
TACATGAGAGTTACTAAGAG+CGG 0.648995 5_4:+68665501 Msa0866730:CDS
TAGACTAATCCCTCGTTCAG+CGG 0.660215 5_4:+68665599 Msa0866730:CDS
GAAGGAAAACAAACCCTGTG+TGG 0.663337 5_4:+68662436 Msa0866730:CDS
GAAAGACAATAGAAACACCA+TGG 0.668042 5_4:-68662598 None:intergenic
CGATTCATCTTCTGACGATG+AGG 0.674017 5_4:+68665551 Msa0866730:CDS
AAGGAAAACAAACCCTGTGT+GGG 0.684333 5_4:+68662437 Msa0866730:CDS
TGAAGAAAGTGACAATAGCG+AGG 0.689085 5_4:+68665985 Msa0866730:CDS
GAGGTTAAAACATCACGTGG+TGG 0.705714 5_4:+68666028 Msa0866730:CDS
GCTGAGGTTAAAACATCACG+TGG 0.716701 5_4:+68666025 Msa0866730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTAATATATTCAAAAAAT+AGG - chr5_4:68663036-68663055 None:intergenic 10.0%
!!! AAATGAGTTTATTTTATTAA+TGG + chr5_4:68665001-68665020 Msa0866730:intron 10.0%
!! TAAGAAAACAAAATTAAGAA+CGG - chr5_4:68662700-68662719 None:intergenic 15.0%
!! TAATAAAAGTTATATGTATC+TGG + chr5_4:68662855-68662874 Msa0866730:intron 15.0%
!! TTCTGATTAAGAATATAAAA+AGG - chr5_4:68663183-68663202 None:intergenic 15.0%
!! AACTTAGTAAATGATATATA+TGG - chr5_4:68663501-68663520 None:intergenic 15.0%
!! ATAGTTCAATTAAATTGAAA+TGG + chr5_4:68663558-68663577 Msa0866730:intron 15.0%
!!! TATTTATATTTTCTTGGTTT+TGG + chr5_4:68663743-68663762 Msa0866730:intron 15.0%
!! ATCTTGAAATACATAAATAT+AGG + chr5_4:68664030-68664049 Msa0866730:intron 15.0%
!! TCTTGAAATACATAAATATA+GGG + chr5_4:68664031-68664050 Msa0866730:intron 15.0%
!! GCTATTAATAAGAAAAAGTT+GGG - chr5_4:68662915-68662934 None:intergenic 20.0%
!! AGCTATTAATAAGAAAAAGT+TGG - chr5_4:68662916-68662935 None:intergenic 20.0%
!!! CTTTTTCTTATTAATAGCTA+CGG + chr5_4:68662917-68662936 Msa0866730:intron 20.0%
!! TTATGATAGACAATATTTGT+GGG + chr5_4:68663214-68663233 Msa0866730:intron 20.0%
!! TATTGTCATATTGTGATTAT+TGG + chr5_4:68663810-68663829 Msa0866730:intron 20.0%
!! ATTATGACTACATCTATAAA+TGG + chr5_4:68665116-68665135 Msa0866730:CDS 20.0%
!! TTAAATCAAATTTGAGAAGA+AGG + chr5_4:68665181-68665200 Msa0866730:intron 20.0%
!! TAAATCAAATTTGAGAAGAA+GGG + chr5_4:68665182-68665201 Msa0866730:intron 20.0%
!!! TGTTAATTTGTGTTTTTTGA+GGG - chr5_4:68665776-68665795 None:intergenic 20.0%
!! GATAATATCTCATTCACTTT+TGG + chr5_4:68662503-68662522 Msa0866730:CDS 25.0%
!!! CTTCATCAGTTTAATTTGTT+GGG + chr5_4:68662526-68662545 Msa0866730:CDS 25.0%
!!! TTCATCAGTTTAATTTGTTG+GGG + chr5_4:68662527-68662546 Msa0866730:CDS 25.0%
! CGAAAATTAGTGATAATTTG+AGG - chr5_4:68662566-68662585 None:intergenic 25.0%
! TATTGTCTTTCTTCTTACTT+GGG + chr5_4:68662610-68662629 Msa0866730:CDS 25.0%
! GTTATGATAGACAATATTTG+TGG + chr5_4:68663213-68663232 Msa0866730:intron 25.0%
! AAACTGAAACAGAATGAAAA+GGG + chr5_4:68663301-68663320 Msa0866730:intron 25.0%
!!! TGTAAATCAACATTTTTGAG+AGG + chr5_4:68663332-68663351 Msa0866730:intron 25.0%
! AGTGTATCTGATCTATAATA+CGG + chr5_4:68663474-68663493 Msa0866730:intron 25.0%
! TTCAATTAAATTGAAATGGC+TGG + chr5_4:68663562-68663581 Msa0866730:intron 25.0%
! TAAAAAGAGAATACTAAGAG+TGG - chr5_4:68663769-68663788 None:intergenic 25.0%
!!! TGTTTTTTCTTTGTGCTTTT+TGG + chr5_4:68663850-68663869 Msa0866730:intron 25.0%
! TGAACACATATTATATTGTG+TGG - chr5_4:68664161-68664180 None:intergenic 25.0%
!! CTGACAATTTGTTTATAAGT+GGG + chr5_4:68664276-68664295 Msa0866730:intron 25.0%
!! TGACAATTTGTTTATAAGTG+GGG + chr5_4:68664277-68664296 Msa0866730:intron 25.0%
!! CTGACAATTTGTTTATAAGT+GGG + chr5_4:68664276-68664295 Msa0866730:intron 25.0%
!! TGACAATTTGTTTATAAGTG+GGG + chr5_4:68664277-68664296 Msa0866730:intron 25.0%
!! CTGACAATTTGTTTATAAGT+GGG + chr5_4:68664276-68664295 Msa0866730:intron 25.0%
!! TGACAATTTGTTTATAAGTG+GGG + chr5_4:68664277-68664296 Msa0866730:intron 25.0%
! GAAGTTTGATTGCAAATATA+TGG - chr5_4:68664981-68665000 None:intergenic 25.0%
!!! AATCTTTCTTTTGGTTTCAA+AGG - chr5_4:68665289-68665308 None:intergenic 25.0%
!!! CTGTTAATTTGTGTTTTTTG+AGG - chr5_4:68665777-68665796 None:intergenic 25.0%
! AAAAACACAAATTAACAGTC+TGG + chr5_4:68665779-68665798 Msa0866730:intron 25.0%
! TTTTCCTTCACACAATATGA+AGG - chr5_4:68662425-68662444 None:intergenic 30.0%
!! GCTTCATCAGTTTAATTTGT+TGG + chr5_4:68662525-68662544 Msa0866730:CDS 30.0%
CTATTGTCTTTCTTCTTACT+TGG + chr5_4:68662609-68662628 Msa0866730:CDS 30.0%
CCTTCTCTTATAAATAAGAC+AGG - chr5_4:68662829-68662848 None:intergenic 30.0%
!! CCTGTCTTATTTATAAGAGA+AGG + chr5_4:68662826-68662845 Msa0866730:intron 30.0%
CATTCTGTTTCAGTTTGAAA+GGG - chr5_4:68663297-68663316 None:intergenic 30.0%
TCATTCTGTTTCAGTTTGAA+AGG - chr5_4:68663298-68663317 None:intergenic 30.0%
CAAACTGAAACAGAATGAAA+AGG + chr5_4:68663300-68663319 Msa0866730:intron 30.0%
AATTAAACTCTTCATACCGT+GGG - chr5_4:68663424-68663443 None:intergenic 30.0%
AAATTAAACTCTTCATACCG+TGG - chr5_4:68663425-68663444 None:intergenic 30.0%
! AGATACACTGGTTATTCATT+GGG - chr5_4:68663463-68663482 None:intergenic 30.0%
GTATTATAGATCAGATACAC+TGG - chr5_4:68663475-68663494 None:intergenic 30.0%
TTGACAACAAAGAGACAAAA+TGG - chr5_4:68663636-68663655 None:intergenic 30.0%
!! TTTTCTTTGTGCTTTTTGGA+TGG + chr5_4:68663854-68663873 Msa0866730:intron 30.0%
! AATCCTTGTTTACTAGTGAA+TGG + chr5_4:68664195-68664214 Msa0866730:intron 30.0%
TAACCATTCACTAGTAAACA+AGG - chr5_4:68664201-68664220 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG - chr5_4:68664278-68664297 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG + chr5_4:68664275-68664294 Msa0866730:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG + chr5_4:68664278-68664297 Msa0866730:intron 30.0%
CCACTTATAAACAAATTGTC+AGG - chr5_4:68664278-68664297 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG + chr5_4:68664275-68664294 Msa0866730:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG + chr5_4:68664278-68664297 Msa0866730:intron 30.0%
CCACTTATAAACAAATTGTC+AGG - chr5_4:68664278-68664297 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG + chr5_4:68664275-68664294 Msa0866730:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG + chr5_4:68664278-68664297 Msa0866730:intron 30.0%
! GAATATAGTCTTAGAAATCG+TGG - chr5_4:68664816-68664835 None:intergenic 30.0%
CGCTTATACAAACTAAACTT+AGG + chr5_4:68664938-68664957 Msa0866730:intron 30.0%
ACCAAAAGAAAGATTTGAGT+CGG + chr5_4:68665294-68665313 Msa0866730:CDS 30.0%
TTATTCCAGACATACACTTA+AGG - chr5_4:68665638-68665657 None:intergenic 30.0%
!!! TGTTTTTTGAGGGTTTGAAA+GGG - chr5_4:68665766-68665785 None:intergenic 30.0%
TAAAACTCAAGTGCCTAAAA+AGG + chr5_4:68665862-68665881 Msa0866730:intron 30.0%
GAAAGACAATAGAAACACCA+TGG - chr5_4:68662601-68662620 None:intergenic 35.0%
TTGCAGAGACATATTCAATC+TGG + chr5_4:68662730-68662749 Msa0866730:intron 35.0%
AGAGACATATTCAATCTGGT+CGG + chr5_4:68662734-68662753 Msa0866730:intron 35.0%
! GCTGAATTAAGTTTTACCCA+CGG + chr5_4:68663405-68663424 Msa0866730:intron 35.0%
! CAGATACACTGGTTATTCAT+TGG - chr5_4:68663464-68663483 None:intergenic 35.0%
AGAGACAAAATGGCATGTAA+GGG - chr5_4:68663626-68663645 None:intergenic 35.0%
AAGAGACAAAATGGCATGTA+AGG - chr5_4:68663627-68663646 None:intergenic 35.0%
ATGTGGGACTCTTAACATAT+AGG - chr5_4:68664241-68664260 None:intergenic 35.0%
ATATGTTAAGAGTCCCACAT+CGG + chr5_4:68664241-68664260 Msa0866730:intron 35.0%
TGATACCATCTTAGAAATCG+TGG - chr5_4:68664351-68664370 None:intergenic 35.0%
! AATAACGGAAACCTGATAAC+AGG - chr5_4:68664400-68664419 None:intergenic 35.0%
TGTTATCAGGTTTCCGTTAT+TGG + chr5_4:68664399-68664418 Msa0866730:intron 35.0%
GTTATCAGGTTTCCGTTATT+GGG + chr5_4:68664400-68664419 Msa0866730:intron 35.0%
TGAAGCGTGAACATAAATGA+CGG - chr5_4:68664430-68664449 None:intergenic 35.0%
TGATACCATCTTAGAAATCG+TGG - chr5_4:68664351-68664370 None:intergenic 35.0%
TGAAGCGTGAACATAAATGA+CGG - chr5_4:68664430-68664449 None:intergenic 35.0%
! TAGTCTTAGAAATCGTGGTT+GGG - chr5_4:68664811-68664830 None:intergenic 35.0%
! ATAGTCTTAGAAATCGTGGT+TGG - chr5_4:68664812-68664831 None:intergenic 35.0%
TCAAAAGATCAACATCGAAG+AGG + chr5_4:68665150-68665169 Msa0866730:CDS 35.0%
CCAAAAGAAAGATTTGAGTC+GGG + chr5_4:68665295-68665314 Msa0866730:CDS 35.0%
CAAAAGAAAGATTTGAGTCG+GGG + chr5_4:68665296-68665315 Msa0866730:CDS 35.0%
ACTTACCCATAGTAGTATTC+CGG - chr5_4:68665358-68665377 None:intergenic 35.0%
TACATGAGAGTTACTAAGAG+CGG + chr5_4:68665501-68665520 Msa0866730:CDS 35.0%
TCATTCCTTAAGTGTATGTC+TGG + chr5_4:68665630-68665649 Msa0866730:intron 35.0%
!!! GTGTTTTTTGAGGGTTTGAA+AGG - chr5_4:68665767-68665786 None:intergenic 35.0%
!!! AGGCACTTGAGTTTTATTCA+CGG - chr5_4:68665858-68665877 None:intergenic 35.0%
!!! TTTGCAGTTGCACCTTTTTT+TGG - chr5_4:68665893-68665912 None:intergenic 35.0%
AATAGCGAGGATGAAGTTAA+TGG + chr5_4:68665998-68666017 Msa0866730:CDS 35.0%
AAGGAAAACAAACCCTGTGT+GGG + chr5_4:68662437-68662456 Msa0866730:CDS 40.0%
! TTTCTTCTTACTTGGGTTGC+TGG + chr5_4:68662617-68662636 Msa0866730:CDS 40.0%
! TTCTTCTTACTTGGGTTGCT+GGG + chr5_4:68662618-68662637 Msa0866730:CDS 40.0%
!! TTGTCTTCTAGAACCAGCTA+CGG + chr5_4:68662757-68662776 Msa0866730:intron 40.0%
TGAGAATTACATACCGTAGC+TGG - chr5_4:68662773-68662792 None:intergenic 40.0%
CTACGGATGAAGTAAAATGC+TGG + chr5_4:68662934-68662953 Msa0866730:intron 40.0%
! TTTGACTTCGTGTCTAGTTC+TGG + chr5_4:68662957-68662976 Msa0866730:intron 40.0%
TTGTCTCTCTCGTTCAAAAG+AGG + chr5_4:68663110-68663129 Msa0866730:intron 40.0%
TACCAGAGCTGTGTAGTATT+GGG - chr5_4:68663899-68663918 None:intergenic 40.0%
TTACCAGAGCTGTGTAGTAT+TGG - chr5_4:68663900-68663919 None:intergenic 40.0%
CCATCTTAGAAATCGTGGTT+GGG - chr5_4:68664346-68664365 None:intergenic 40.0%
ACCATCTTAGAAATCGTGGT+TGG - chr5_4:68664347-68664366 None:intergenic 40.0%
GAAGCGTGAACATAAATGAC+GGG - chr5_4:68664429-68664448 None:intergenic 40.0%
CCATCTTAGAAATCGTGGTT+GGG - chr5_4:68664346-68664365 None:intergenic 40.0%
ACCATCTTAGAAATCGTGGT+TGG - chr5_4:68664347-68664366 None:intergenic 40.0%
TGTTGTCAGGTTTCCGTTAT+CGG + chr5_4:68664631-68664650 Msa0866730:intron 40.0%
GAAGCGTGAACATAAATGAC+GGG - chr5_4:68664429-68664448 None:intergenic 40.0%
! TGTATAAGCGTTGTGTAGCT+GGG - chr5_4:68664928-68664947 None:intergenic 40.0%
! TTGTATAAGCGTTGTGTAGC+TGG - chr5_4:68664929-68664948 None:intergenic 40.0%
! CCCGACTCAAATCTTTCTTT+TGG - chr5_4:68665298-68665317 None:intergenic 40.0%
CTAGACCGGAATACTACTAT+GGG + chr5_4:68665350-68665369 Msa0866730:CDS 40.0%
CAACAGATCAGCAAGATCAT+TGG + chr5_4:68665449-68665468 Msa0866730:intron 40.0%
ACTCTCATGTAAGTACGAGA+TGG - chr5_4:68665492-68665511 None:intergenic 40.0%
TCGTTTAATCCCATAGCTGA+AGG - chr5_4:68665528-68665547 None:intergenic 40.0%
CAACGAAATCAGTACCAGTT+TGG - chr5_4:68665812-68665831 None:intergenic 40.0%
AACTCAAGTGCCTAAAAAGG+CGG + chr5_4:68665865-68665884 Msa0866730:intron 40.0%
!!! TTTTTTGGTGCCGCCTTTTT+AGG - chr5_4:68665878-68665897 None:intergenic 40.0%
AAAAAGGCGGCACCAAAAAA+AGG + chr5_4:68665878-68665897 Msa0866730:intron 40.0%
TGAAGAAAGTGACAATAGCG+AGG + chr5_4:68665985-68666004 Msa0866730:CDS 40.0%
GCAGCCTTCATATTGTGTGA+AGG + chr5_4:68662418-68662437 Msa0866730:CDS 45.0%
GAAGGAAAACAAACCCTGTG+TGG + chr5_4:68662436-68662455 Msa0866730:CDS 45.0%
AAAACAAACCCTGTGTGGGT+TGG + chr5_4:68662441-68662460 Msa0866730:CDS 45.0%
AAACAAACCCTGTGTGGGTT+GGG + chr5_4:68662442-68662461 Msa0866730:CDS 45.0%
! TTTTGAACCCAACCCACACA+GGG - chr5_4:68662452-68662471 None:intergenic 45.0%
TTTCGTGCTAAGTCTAGCCA+TGG + chr5_4:68662581-68662600 Msa0866730:CDS 45.0%
! TCATTGGGTCAGAGAGTGTA+CGG - chr5_4:68663448-68663467 None:intergenic 45.0%
!! CTTTGTGCTTTTTGGATGGC+TGG + chr5_4:68663858-68663877 Msa0866730:intron 45.0%
! AGAGCTGTGTAGTATTGGGT+TGG - chr5_4:68663895-68663914 None:intergenic 45.0%
AACCCAATACTACACAGCTC+TGG + chr5_4:68663894-68663913 Msa0866730:CDS 45.0%
! TTAAGAGTCCCACATCGGTT+AGG + chr5_4:68664246-68664265 Msa0866730:intron 45.0%
CTAACACAACCCCACAAAAC+CGG - chr5_4:68664322-68664341 None:intergenic 45.0%
! CCCAACCACGATTTCTAAGA+TGG + chr5_4:68664343-68664362 Msa0866730:intron 45.0%
AGAGCCTCTTCACGATTCTT+TGG + chr5_4:68664370-68664389 Msa0866730:intron 45.0%
GAGCCTCTTCACGATTCTTT+GGG + chr5_4:68664371-68664390 Msa0866730:intron 45.0%
TGTCCCAAAGAATCGTGAAG+AGG - chr5_4:68664377-68664396 None:intergenic 45.0%
!! TCTTTGGGACACCTGTTATC+AGG + chr5_4:68664386-68664405 Msa0866730:intron 45.0%
ATGTGTAATCCTGAGCGTGA+GGG + chr5_4:68664451-68664470 Msa0866730:intron 45.0%
GTGTGTTAAGAGTCCCACAT+CGG + chr5_4:68664475-68664494 Msa0866730:intron 45.0%
! TTAAGAGTCCCACATCGGTT+AGG + chr5_4:68664246-68664265 Msa0866730:intron 45.0%
CTAACACATCCCCACAAAAC+CGG - chr5_4:68664556-68664575 None:intergenic 45.0%
! CCCAACCACGATTTCTAAGA+TGG + chr5_4:68664343-68664362 Msa0866730:intron 45.0%
!! GATAACGGAAACCTGACAAC+AGG - chr5_4:68664632-68664651 None:intergenic 45.0%
GTTGTCAGGTTTCCGTTATC+GGG + chr5_4:68664632-68664651 Msa0866730:intron 45.0%
GTGTGTTAAGAGTCCCACAT+CGG + chr5_4:68664475-68664494 Msa0866730:intron 45.0%
CTAACACAACCCCACAAAAC+CGG - chr5_4:68664322-68664341 None:intergenic 45.0%
CCATAGTAGTATTCCGGTCT+AGG - chr5_4:68665352-68665371 None:intergenic 45.0%
CCTAGACCGGAATACTACTA+TGG + chr5_4:68665349-68665368 Msa0866730:CDS 45.0%
AGATCAGCAAGATCATTGGC+TGG + chr5_4:68665453-68665472 Msa0866730:intron 45.0%
CTCATGTAAGTACGAGATGG+TGG - chr5_4:68665489-68665508 None:intergenic 45.0%
CGATTCATCTTCTGACGATG+AGG + chr5_4:68665551-68665570 Msa0866730:CDS 45.0%
! ATTAGTCTAGGCTGTGTTGC+AGG - chr5_4:68665588-68665607 None:intergenic 45.0%
TAGACTAATCCCTCGTTCAG+CGG + chr5_4:68665599-68665618 Msa0866730:CDS 45.0%
TTTCGTTGTGTTCTTGCTGC+AGG + chr5_4:68665824-68665843 Msa0866730:intron 45.0%
AAGCTGACAGCTCAAAGAAG+AGG + chr5_4:68665915-68665934 Msa0866730:CDS 45.0%
CTCAGAAGAAGAGCAAGAAG+AGG + chr5_4:68665961-68665980 Msa0866730:CDS 45.0%
CGAGGATGAAGTTAATGGTG+AGG + chr5_4:68666003-68666022 Msa0866730:CDS 45.0%
TGAAGTTAATGGTGAGGCTG+AGG + chr5_4:68666009-68666028 Msa0866730:CDS 45.0%
GCTGAGGTTAAAACATCACG+TGG + chr5_4:68666025-68666044 Msa0866730:CDS 45.0%
GAGGTTAAAACATCACGTGG+TGG + chr5_4:68666028-68666047 Msa0866730:CDS 45.0%
! TCACGTGGTGGAAAAAGTTC+TGG + chr5_4:68666040-68666059 Msa0866730:CDS 45.0%
! TGGTGGAAAAAGTTCTGGCA+AGG + chr5_4:68666045-68666064 Msa0866730:CDS 45.0%
! GGTGGAAAAAGTTCTGGCAA+GGG + chr5_4:68666046-68666065 Msa0866730:CDS 45.0%
!!! AATATTTATTTATATTTTCT+TGG + chr5_4:68663737-68663756 Msa0866730:intron 5.0%
!! GTTTTGAACCCAACCCACAC+AGG - chr5_4:68662453-68662472 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + chr5_4:68664309-68664328 Msa0866730:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG + chr5_4:68664320-68664339 Msa0866730:intron 50.0%
!! AATGACGGGTGGCCCAATAA+CGG - chr5_4:68664415-68664434 None:intergenic 50.0%
! GCGTGAACATAAATGACGGG+TGG - chr5_4:68664426-68664445 None:intergenic 50.0%
GATGTGTAATCCTGAGCGTG+AGG + chr5_4:68664450-68664469 Msa0866730:intron 50.0%
TGTGTAATCCTGAGCGTGAG+GGG + chr5_4:68664452-68664471 Msa0866730:intron 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + chr5_4:68664309-68664328 Msa0866730:intron 50.0%
!! CGGTTTTGTGGGGATGTGTT+AGG + chr5_4:68664554-68664573 Msa0866730:intron 50.0%
ATTCTGTGCCACCTGTTGTC+AGG + chr5_4:68664618-68664637 Msa0866730:intron 50.0%
AACGGAAACCTGACAACAGG+TGG - chr5_4:68664629-68664648 None:intergenic 50.0%
! GCGTGAACATAAATGACGGG+TGG - chr5_4:68664426-68664445 None:intergenic 50.0%
ATGTCCAATCCTGAGCGTGA+GGG + chr5_4:68664683-68664702 Msa0866730:intron 50.0%
GTTAAGAGTCCCACATCGGT+AGG + chr5_4:68664245-68664264 Msa0866730:intron 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + chr5_4:68664309-68664328 Msa0866730:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG + chr5_4:68664320-68664339 Msa0866730:intron 50.0%
GAGTCGGGGATTCCAATAAG+TGG + chr5_4:68665310-68665329 Msa0866730:CDS 50.0%
GCTCTGCGTCTACCACTTAT+TGG - chr5_4:68665325-68665344 None:intergenic 50.0%
ACGCAGAGCAATACCTAGAC+CGG + chr5_4:68665336-68665355 Msa0866730:CDS 50.0%
TAAGAGCGGACCTTCAGCTA+TGG + chr5_4:68665515-68665534 Msa0866730:CDS 50.0%
AAGAGCGGACCTTCAGCTAT+GGG + chr5_4:68665516-68665535 Msa0866730:CDS 50.0%
!! GCTGAACGAGGGATTAGTCT+AGG - chr5_4:68665600-68665619 None:intergenic 50.0%
AGTCTGGTCTGTGTCCAAAC+TGG + chr5_4:68665795-68665814 Msa0866730:intron 50.0%
! GAAAAAGTTCTGGCAAGGGC+CGG + chr5_4:68666050-68666069 Msa0866730:CDS 50.0%
! AAAAAGTTCTGGCAAGGGCC+GGG + chr5_4:68666051-68666070 Msa0866730:CDS 50.0%
ACACTTTGGATGCCTTACCC+CGG - chr5_4:68666072-68666091 None:intergenic 50.0%
! GGGTAAGGCATCCAAAGTGT+CGG + chr5_4:68666072-68666091 Msa0866730:CDS 50.0%
!! ATCCAAAGTGTCGGAGTCTG+AGG + chr5_4:68666081-68666100 Msa0866730:CDS 50.0%
!! TCCAAAGTGTCGGAGTCTGA+GGG + chr5_4:68666082-68666101 Msa0866730:CDS 50.0%
! GTCCCACATCGGTTAGGAGT+TGG + chr5_4:68664252-68664271 Msa0866730:intron 55.0%
GGCCAACTCCTAACCGATGT+GGG - chr5_4:68664257-68664276 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG - chr5_4:68664258-68664277 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG + chr5_4:68664300-68664319 Msa0866730:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - chr5_4:68664308-68664327 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + chr5_4:68664308-68664327 Msa0866730:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + chr5_4:68664310-68664329 Msa0866730:intron 55.0%
GTGTAATCCTGAGCGTGAGG+GGG + chr5_4:68664453-68664472 Msa0866730:intron 55.0%
! GTCCCACATCGGTTAGGAGT+TGG + chr5_4:68664252-68664271 Msa0866730:intron 55.0%
GGCCAACTCCTAACCGATGT+GGG - chr5_4:68664257-68664276 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG - chr5_4:68664258-68664277 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG + chr5_4:68664300-68664319 Msa0866730:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - chr5_4:68664308-68664327 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + chr5_4:68664308-68664327 Msa0866730:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + chr5_4:68664310-68664329 Msa0866730:intron 55.0%
GGTGGCACAGAATCGTGAAG+AGG - chr5_4:68664611-68664630 None:intergenic 55.0%
!! AATGACGGGTGGCCCGATAA+CGG - chr5_4:68664647-68664666 None:intergenic 55.0%
GATGTCCAATCCTGAGCGTG+AGG + chr5_4:68664682-68664701 Msa0866730:intron 55.0%
TGTCCAATCCTGAGCGTGAG+GGG + chr5_4:68664684-68664703 Msa0866730:intron 55.0%
AGTCCCACATCGGTAGGAGT+TGG + chr5_4:68664717-68664736 Msa0866730:intron 55.0%
AGGCCAACTCCTACCGATGT+GGG - chr5_4:68664723-68664742 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG + chr5_4:68664300-68664319 Msa0866730:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - chr5_4:68664308-68664327 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + chr5_4:68664308-68664327 Msa0866730:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + chr5_4:68664310-68664329 Msa0866730:intron 55.0%
! AAAAGTTCTGGCAAGGGCCG+GGG + chr5_4:68666052-68666071 Msa0866730:CDS 55.0%
ACCCTCAGACTCCGACACTT+TGG - chr5_4:68666086-68666105 None:intergenic 55.0%
GTGTCGGAGTCTGAGGGTAA+AGG + chr5_4:68666088-68666107 Msa0866730:CDS 55.0%
GAGTCTGAGGGTAAAGGCTC+TGG + chr5_4:68666094-68666113 Msa0866730:CDS 55.0%
!! CCCCACAAAACCGGCTTGTG+AGG - chr5_4:68664313-68664332 None:intergenic 60.0%
TAACACACCCCCTCACGCTC+AGG - chr5_4:68664463-68664482 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG - chr5_4:68664313-68664332 None:intergenic 60.0%
GTCCAATCCTGAGCGTGAGG+GGG + chr5_4:68664685-68664704 Msa0866730:intron 60.0%
TAACACACCCCCTCACGCTC+AGG - chr5_4:68664463-68664482 None:intergenic 60.0%
CAGGCCAACTCCTACCGATG+TGG - chr5_4:68664724-68664743 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG - chr5_4:68664313-68664332 None:intergenic 60.0%
ACTCGCTCACCGCTGAACGA+GGG - chr5_4:68665611-68665630 None:intergenic 60.0%
CACCCCCTCACGCTCAGGAT+TGG - chr5_4:68664458-68664477 None:intergenic 65.0%
GACTCGCTCACCGCTGAACG+AGG - chr5_4:68665612-68665631 None:intergenic 65.0%
TTCTGGCAAGGGCCGGGGTA+AGG + chr5_4:68666057-68666076 Msa0866730:CDS 65.0%
! GAGGGTAAAGGCTCTGGCCG+AGG + chr5_4:68666100-68666119 Msa0866730:CDS 65.0%
! AAAGGCTCTGGCCGAGGACG+TGG + chr5_4:68666106-68666125 Msa0866730:CDS 65.0%
GCAGAGCGCGACCACGTCCT+CGG - chr5_4:68666120-68666139 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 68662396 68666171 68662396 ID=Msa0866730;Name=Msa0866730
chr5_4 mRNA 68662396 68666171 68662396 ID=Msa0866730-mRNA-1;Parent=Msa0866730;Name=Msa0866730-mRNA-1;_AED=0.28;_eAED=0.28;_QI=20|0.66|0.57|0.85|0.5|0.57|7|0|308
chr5_4 exon 68662396 68662639 68662396 ID=Msa0866730-mRNA-1:exon:21720;Parent=Msa0866730-mRNA-1
chr5_4 exon 68662736 68662751 68662736 ID=Msa0866730-mRNA-1:exon:21721;Parent=Msa0866730-mRNA-1
chr5_4 exon 68663889 68663915 68663889 ID=Msa0866730-mRNA-1:exon:21722;Parent=Msa0866730-mRNA-1
chr5_4 exon 68665073 68665171 68665073 ID=Msa0866730-mRNA-1:exon:21723;Parent=Msa0866730-mRNA-1
chr5_4 exon 68665265 68665371 68665265 ID=Msa0866730-mRNA-1:exon:21724;Parent=Msa0866730-mRNA-1
chr5_4 exon 68665455 68665620 68665455 ID=Msa0866730-mRNA-1:exon:21725;Parent=Msa0866730-mRNA-1
chr5_4 exon 68665884 68666171 68665884 ID=Msa0866730-mRNA-1:exon:21726;Parent=Msa0866730-mRNA-1
chr5_4 five_prime_UTR 68662396 68662415 68662396 ID=Msa0866730-mRNA-1:five_prime_utr;Parent=Msa0866730-mRNA-1
chr5_4 CDS 68662416 68662639 68662416 ID=Msa0866730-mRNA-1:cds;Parent=Msa0866730-mRNA-1
chr5_4 CDS 68662736 68662751 68662736 ID=Msa0866730-mRNA-1:cds;Parent=Msa0866730-mRNA-1
chr5_4 CDS 68663889 68663915 68663889 ID=Msa0866730-mRNA-1:cds;Parent=Msa0866730-mRNA-1
chr5_4 CDS 68665073 68665171 68665073 ID=Msa0866730-mRNA-1:cds;Parent=Msa0866730-mRNA-1
chr5_4 CDS 68665265 68665371 68665265 ID=Msa0866730-mRNA-1:cds;Parent=Msa0866730-mRNA-1
chr5_4 CDS 68665455 68665620 68665455 ID=Msa0866730-mRNA-1:cds;Parent=Msa0866730-mRNA-1
chr5_4 CDS 68665884 68666171 68665884 ID=Msa0866730-mRNA-1:cds;Parent=Msa0866730-mRNA-1
Gene Sequence

>Msa0866730

ATGCAGCCTTCATATTGTGTGAAGGAAAACAAACCCTGTGTGGGTTGGGTTCAAAACTACTTCAGTGACTGTCTCTGCAATGTTAATGATAATATCTCATTCACTTTTGGCTTCATCAGTTTAATTTGTTGGGGTGTTGCTGAAATTCCTCAAATTATCACTAATTTTCGTGCTAAGTCTAGCCATGGTGTTTCTATTGTCTTTCTTCTTACTTGGGTTGCTGGAGACATATTCAATCTGTTGCCAACCCAATACTACACAGCTCTGCTTTACACAATCACAACGATCGTATTAGTAGTGCAAAGCTTCTATTATGACTACATCTATAAATGGTGCAAGCGTCGTCAAAAGATCAACATCGAAGAGACTTATGAAGAAGAGAAAAAACCTTTGAAACCAAAAGAAAGATTTGAGTCGGGGATTCCAATAAGTGGTAGACGCAGAGCAATACCTAGACCGGAATACTACTATGGATCAGCAAGATCATTGGCTGGTAATGTTACTCCACCATCTCGTACTTACATGAGAGTTACTAAGAGCGGACCTTCAGCTATGGGATTAAACGACTACGATTCATCTTCTGACGATGAGGCACAATCAGTTCCTGCAACACAGCCTAGACTAATCCCTCGTTCAGCGGCGGCACCAAAAAAAGGTGCAACTGCAAAGAAAGCTGACAGCTCAAAGAAGAGGAAAAAAGCAAAAGATGCATCTGACTCAGAAGAAGAGCAAGAAGAGGCTGAAGAAAGTGACAATAGCGAGGATGAAGTTAATGGTGAGGCTGAGGTTAAAACATCACGTGGTGGAAAAAGTTCTGGCAAGGGCCGGGGTAAGGCATCCAAAGTGTCGGAGTCTGAGGGTAAAGGCTCTGGCCGAGGACGTGGTCGCGCTCTGCAAATAACAGCAGTTCTAAATCTTCTCCAGTGA

Protein sequence

>Msa0866730

MQPSYCVKENKPCVGWVQNYFSDCLCNVNDNISFTFGFISLICWGVAEIPQIITNFRAKSSHGVSIVFLLTWVAGDIFNLLPTQYYTALLYTITTIVLVVQSFYYDYIYKWCKRRQKINIEETYEEEKKPLKPKERFESGIPISGRRRAIPRPEYYYGSARSLAGNVTPPSRTYMRVTKSGPSAMGLNDYDSSSDDEAQSVPATQPRLIPRSAAAPKKGATAKKADSSKKRKKAKDASDSEEEQEEAEESDNSEDEVNGEAEVKTSRGGKSSGKGRGKASKVSESEGKGSGRGRGRALQITAVLNLLQ*