AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0867200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867200 MtrunA17_Chr1g0154211 89.562 297 12 3 1 279 1 296 0.0 530
Msa0867200 MtrunA17_Chr1g0154171 61.986 292 70 5 1 279 1 264 6.52e-110 322
Msa0867200 MtrunA17_Chr1g0154111 60.068 293 76 6 6 279 9 279 9.77e-107 322
Msa0867200 MtrunA17_Chr1g0154111 58.768 211 69 4 38 237 368 571 2.38e-69 225
Msa0867200 MtrunA17_Chr1g0154191 56.643 286 86 3 6 279 5 264 2.02e-101 301
Msa0867200 MtrunA17_Chr1g0154101 51.124 356 89 8 7 279 168 521 2.11e-100 312
Msa0867200 MtrunA17_Chr1g0154101 69.565 161 37 1 6 154 8 168 3.17e-71 234
Msa0867200 MtrunA17_Chr1g0154241 62.500 256 68 7 6 237 5 256 6.92e-100 293
Msa0867200 MtrunA17_Chr1g0154131 56.993 286 46 7 7 279 168 389 1.90e-94 286
Msa0867200 MtrunA17_Chr1g0154131 70.186 161 35 2 6 154 9 168 4.12e-71 226
Msa0867200 MtrunA17_Chr1g0154251 58.755 257 70 7 6 228 10 264 2.20e-88 272
Msa0867200 MtrunA17_Chr1g0154151 54.264 258 63 7 38 279 19 237 9.88e-78 239
Msa0867200 MtrunA17_Chr1g0154161 82.482 137 12 1 4 128 11 147 6.27e-76 234
Msa0867200 MtrunA17_Chr1g0154071 50.178 281 108 7 11 279 145 405 1.86e-75 238
Msa0867200 MtrunA17_Chr1g0154071 66.912 136 32 2 3 126 8 142 8.90e-54 182
Msa0867200 MtrunA17_Chr1g0154041 33.579 271 152 10 22 279 15 270 7.84e-26 106
Msa0867200 MtrunA17_Chr7g0233561 33.696 92 61 0 21 112 16 107 8.01e-14 70.5
Msa0867200 MtrunA17_Chr7g0233571 35.106 94 61 0 16 109 3 96 1.14e-13 68.9
Msa0867200 MtrunA17_Chr3g0131891 31.522 92 63 0 21 112 17 108 1.76e-13 69.7
Msa0867200 MtrunA17_Chr7g0233531 36.486 74 47 0 39 112 2 75 8.43e-12 64.3
Msa0867200 MtrunA17_Chr7g0233541 30.065 153 83 5 39 170 2 151 8.40e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867200 AT4G33280.2 49.231 130 51 3 9 125 11 138 5.46e-36 130
Msa0867200 AT4G33280.3 49.231 130 51 3 9 125 11 138 4.82e-35 130
Msa0867200 AT4G33280.1 50.000 126 48 3 9 121 11 134 6.41e-35 129
Msa0867200 AT3G06220.1 28.926 121 80 2 23 139 11 129 5.25e-15 72.0
Msa0867200 AT3G06160.5 26.396 197 130 5 23 214 11 197 1.32e-14 73.2
Msa0867200 AT3G06160.4 26.396 197 130 5 23 214 11 197 1.32e-14 73.2
Msa0867200 AT3G06160.3 26.396 197 130 5 23 214 11 197 1.32e-14 73.2
Msa0867200 AT4G34400.2 34.066 91 56 2 23 112 17 104 1.54e-14 73.6
Msa0867200 AT4G34400.1 34.066 91 56 2 23 112 17 104 1.54e-14 73.6
Msa0867200 AT3G06160.1 26.396 197 130 5 23 214 26 212 1.62e-14 73.2
Msa0867200 AT3G06160.2 26.396 197 130 5 23 214 70 256 2.27e-14 72.8
Msa0867200 AT3G18990.1 24.101 278 146 6 23 269 6 249 5.41e-13 68.6
Msa0867200 AT3G18990.2 24.627 268 157 5 23 269 6 249 6.72e-13 68.6

Find 86 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATAAAACAACATTATT+TGG 0.144732 5_4:+69915602 None:intergenic
TCTTCCTCGTGAACCGTTAA+AGG 0.176194 5_4:-69918315 Msa0867200:five_prime_UTR
CAGCTCCACTAGGACCTTTA+AGG 0.180866 5_4:+69917345 None:intergenic
CCAGAAAATGTGACCCTTAA+AGG 0.236805 5_4:-69917359 Msa0867200:CDS
AACTTCATTAGCTGGCTTCT+TGG 0.255515 5_4:+69916866 None:intergenic
CCTTTGGCCGGTTGGTTGTT+TGG 0.258620 5_4:+69916890 None:intergenic
TACAAGTTGTTGTTGAAAAT+TGG 0.275640 5_4:+69918111 None:intergenic
TGGTTGTTTGGGAAAGTAGA+TGG 0.276616 5_4:+69916902 None:intergenic
CTTTGGCCGGTTGGTTGTTT+GGG 0.281327 5_4:+69916891 None:intergenic
TCACGAGAATTACCTTCTTT+TGG 0.284057 5_4:+69916810 None:intergenic
TGGTTCACCTGAGAGATTTC+GGG 0.291973 5_4:-69917030 Msa0867200:CDS
CTCTCTGCTTCTGTTTGAAA+TGG 0.300695 5_4:-69918221 Msa0867200:exon
AGTGGAGCTGTGTGGGATAT+TGG 0.305311 5_4:-69917332 Msa0867200:CDS
GTGGTTCACCTGAGAGATTT+CGG 0.308902 5_4:-69917031 Msa0867200:CDS
TGTCGATGGTCCACGTATTC+TGG 0.310730 5_4:-69915660 Msa0867200:CDS
AAGTAGATGGGGAGTTCCTT+AGG 0.312746 5_4:+69916915 None:intergenic
CTTGGGAAGAAGATATTTAC+TGG 0.326346 5_4:-69918180 Msa0867200:CDS
GTCTTCCTCGCTTCTTAGTC+TGG 0.344493 5_4:+69916835 None:intergenic
TAGCTGGCTTCTTGGTCCTT+TGG 0.354794 5_4:+69916874 None:intergenic
GAGATAAAACAACATTATTT+GGG 0.362938 5_4:+69915603 None:intergenic
CACCTGAGAGATTTCGGGTT+CGG 0.376625 5_4:-69917025 Msa0867200:CDS
GTGGAGCTGTGTGGGATATT+GGG 0.390357 5_4:-69917331 Msa0867200:CDS
GTGAGGGAGCACTTGATTTG+AGG 0.403845 5_4:-69916791 Msa0867200:CDS
CTTCCTCGTGAACCGTTAAA+GGG 0.406379 5_4:-69918314 Msa0867200:five_prime_UTR
TGTTTACTTCGTGGGCGGTT+GGG 0.420992 5_4:-69917288 Msa0867200:CDS
TGAGGGAGCACTTGATTTGA+GGG 0.422320 5_4:-69916790 Msa0867200:CDS
TAGGGCTTTAAACCCTTTAA+CGG 0.424192 5_4:+69918302 None:intergenic
CTGTTTACTTCGTGGGCGGT+TGG 0.428777 5_4:-69917289 Msa0867200:CDS
TTCTTGGTCCTTTGGCCGGT+TGG 0.434930 5_4:+69916882 None:intergenic
CTGTTTGAAATGGAAGTAGA+TGG 0.435371 5_4:-69918211 Msa0867200:exon
GGTTGTTTGGGAAAGTAGAT+GGG 0.439627 5_4:+69916903 None:intergenic
TGGCTTCTTGGTCCTTTGGC+CGG 0.440342 5_4:+69916878 None:intergenic
AAGTAGATGGAAGCAGATCT+TGG 0.447214 5_4:-69918198 Msa0867200:CDS
CCTCGCTTCTTAGTCTGGCC+AGG 0.449815 5_4:+69916840 None:intergenic
GGTAAATTAAGAATCACAAA+AGG 0.454147 5_4:+69915627 None:intergenic
AGTAGATGGGGAGTTCCTTA+GGG 0.454636 5_4:+69916916 None:intergenic
CCAGGTGTAACTTCATTAGC+TGG 0.461198 5_4:+69916858 None:intergenic
AGCTCCACTAGGACCTTTAA+GGG 0.472647 5_4:+69917346 None:intergenic
CGCCGAACCCGAAATCTCTC+AGG 0.473424 5_4:+69917023 None:intergenic
GAAGTCAATACTGCTTCTAA+TGG 0.487691 5_4:-69917065 Msa0867200:CDS
GATGGTACTGTTTACTTCGT+GGG 0.490529 5_4:-69917296 Msa0867200:CDS
TACTTTCCCAAACAACCAAC+CGG 0.491088 5_4:-69916897 Msa0867200:CDS
CAACGGTGAATCTCTCTTTG+AGG 0.491919 5_4:-69917210 Msa0867200:intron
CGAGGAAGACCGCCAAAAGA+AGG 0.494591 5_4:-69916822 Msa0867200:CDS
AAGAACACAAACACATCTGT+TGG 0.496016 5_4:-69917089 Msa0867200:CDS
GGACATGCTCAAACTGAAGA+AGG 0.510328 5_4:-69917125 Msa0867200:CDS
AGTAGATGGAAGCAGATCTT+GGG 0.514632 5_4:-69918197 Msa0867200:CDS
AACAAAATATGGAAAAGTTG+AGG 0.516177 5_4:+69915703 None:intergenic
TATTGAATCTGCTTCCCCTA+AGG 0.518194 5_4:-69916931 Msa0867200:CDS
GAAAAGTTGAGGTAAATGAC+TGG 0.520804 5_4:+69915714 None:intergenic
AACAGAAGCAGAGAGTGAAA+TGG 0.524263 5_4:+69918229 None:intergenic
CACCGTTGTACTTAAAGACA+AGG 0.534444 5_4:+69917225 None:intergenic
AGATGGTACTGTTTACTTCG+TGG 0.536376 5_4:-69917297 Msa0867200:CDS
GACATGCTCAAACTGAAGAA+GGG 0.539180 5_4:-69917124 Msa0867200:CDS
GCTTCTAACAAGGAACTCTC+AGG 0.540714 5_4:-69916768 Msa0867200:intron
ATCAAAACATTCAATGTCGA+TGG 0.543207 5_4:-69915674 Msa0867200:CDS
CCAGCTAATGAAGTTACACC+TGG 0.556435 5_4:-69916858 Msa0867200:CDS
TTCCTTGTCTTTAAGTACAA+CGG 0.557608 5_4:-69917227 Msa0867200:CDS
AGGTCCTAGTGGAGCTGTGT+GGG 0.568073 5_4:-69917339 Msa0867200:CDS
GTAAATTAAGAATCACAAAA+GGG 0.573975 5_4:+69915628 None:intergenic
TGATTTGAGGGCTTCTAACA+AGG 0.574575 5_4:-69916778 Msa0867200:CDS
CCAAACAACCAACCGGCCAA+AGG 0.585015 5_4:-69916890 Msa0867200:CDS
ATATCCCACACAGCTCCACT+AGG 0.588180 5_4:+69917335 None:intergenic
GTTGTTTGGGAAAGTAGATG+GGG 0.591431 5_4:+69916904 None:intergenic
CGGTTCACGAGGAAGATGAA+TGG 0.593697 5_4:+69918322 None:intergenic
GTCAATACTGCTTCTAATGG+TGG 0.601970 5_4:-69917062 Msa0867200:CDS
TCTAATGGTGGCGTTGACTG+TGG 0.604326 5_4:-69917050 Msa0867200:CDS
ATAAAACAACATTATTTGGG+AGG 0.606494 5_4:+69915606 None:intergenic
GTCAAGGTTATCGTCAGCAA+AGG 0.607838 5_4:-69915753 Msa0867200:CDS
AAGTTGTTGTTGAAAATTGG+TGG 0.610802 5_4:+69918114 None:intergenic
AGTCTGTCATAGGTCAACCT+AGG 0.615410 5_4:+69918415 None:intergenic
AAAAGTTGAGGTAAATGACT+GGG 0.616205 5_4:+69915715 None:intergenic
AAGGTCCTAGTGGAGCTGTG+TGG 0.617527 5_4:-69917340 Msa0867200:CDS
ACATGCTCAAACTGAAGAAG+GGG 0.624407 5_4:-69917123 Msa0867200:CDS
AAAAGAAGGTAATTCTCGTG+AGG 0.624894 5_4:-69916808 Msa0867200:CDS
GTGACCCTTAAAGGTCCTAG+TGG 0.630968 5_4:-69917350 Msa0867200:CDS
GAACAACTCACCAGAATACG+TGG 0.631909 5_4:+69915650 None:intergenic
AAAGAAGGTAATTCTCGTGA+GGG 0.632567 5_4:-69916807 Msa0867200:CDS
TTCACGAGGAAGATGAATGG+TGG 0.634155 5_4:+69918325 None:intergenic
CCACAGAGGCAGCACAGTCA+AGG 0.637815 5_4:-69915769 Msa0867200:intron
ATTGGGTTGACAACTAGAGA+TGG 0.647577 5_4:-69917314 Msa0867200:CDS
AAACCCTTTAACGGTTCACG+AGG 0.657561 5_4:+69918311 None:intergenic
GGTACTGTTTACTTCGTGGG+CGG 0.659429 5_4:-69917293 Msa0867200:CDS
GTAGATGGGGAGTTCCTTAG+GGG 0.675019 5_4:+69916917 None:intergenic
CATGCTCAAACTGAAGAAGG+GGG 0.720080 5_4:-69917122 Msa0867200:CDS
CCTGGCCAGACTAAGAAGCG+AGG 0.722966 5_4:-69916840 Msa0867200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATGTAGTAAAATTTAA+TGG + chr5_4:69917291-69917310 None:intergenic 10.0%
!!! TTGATTATTTTAACAAAATA+TGG + chr5_4:69918324-69918343 None:intergenic 10.0%
!! ACAAAAATTAAACCTTTATA+AGG - chr5_4:69915970-69915989 Msa0867200:intron 15.0%
!! AGATACAAAATTTAAAAGAT+GGG + chr5_4:69916038-69916057 None:intergenic 15.0%
!! AAGATACAAAATTTAAAAGA+TGG + chr5_4:69916039-69916058 None:intergenic 15.0%
!! TATACTATATGTTCAAAATA+TGG + chr5_4:69916151-69916170 None:intergenic 15.0%
!!! ATTAATTATGTTTAGCTTTT+AGG - chr5_4:69916303-69916322 Msa0867200:intron 15.0%
!!! ACTTTTCAAAAACAAAATTA+AGG - chr5_4:69916378-69916397 Msa0867200:intron 15.0%
!!! CTTTTCAAAAACAAAATTAA+GGG - chr5_4:69916379-69916398 Msa0867200:intron 15.0%
!!! TTTTCAAAAACAAAATTAAG+GGG - chr5_4:69916380-69916399 Msa0867200:intron 15.0%
!! GAAGTTTATATATAATGTAT+TGG - chr5_4:69917719-69917738 Msa0867200:intron 15.0%
!!! AATCATGAGTTTAAAATAAA+AGG + chr5_4:69918211-69918230 None:intergenic 15.0%
!! AAAAAGAGAAAAAGAATGAA+GGG + chr5_4:69915934-69915953 None:intergenic 20.0%
!! TAAAAAGAGAAAAAGAATGA+AGG + chr5_4:69915935-69915954 None:intergenic 20.0%
!!! TTAATTTTTGTTAACATGGA+AGG + chr5_4:69915961-69915980 None:intergenic 20.0%
!!! AGGTTTAATTTTTGTTAACA+TGG + chr5_4:69915965-69915984 None:intergenic 20.0%
!!! TTTATAAGGTTTTCATACTT+GGG - chr5_4:69915984-69916003 Msa0867200:intron 20.0%
!!! ATATGCTTGTTTTTACATAA+TGG - chr5_4:69916178-69916197 Msa0867200:intron 20.0%
!! TTTCAAAAACAAAATTAAGG+GGG - chr5_4:69916381-69916400 Msa0867200:intron 20.0%
!! TCAAGCAAATTATTATCTTT+AGG - chr5_4:69916534-69916553 Msa0867200:intron 20.0%
!!! AAATTGTCTGAAAATGTTTT+AGG + chr5_4:69916621-69916640 None:intergenic 20.0%
!!! TCTTATTTTGTTAGAAAATG+TGG - chr5_4:69916867-69916886 Msa0867200:CDS 20.0%
!! ACAAATTTGACAAAAAAAAC+TGG + chr5_4:69917641-69917660 None:intergenic 20.0%
!! TAAAATAAAAGGATAATCTC+TGG + chr5_4:69918200-69918219 None:intergenic 20.0%
!! GTAAATTAAGAATCACAAAA+GGG + chr5_4:69918388-69918407 None:intergenic 20.0%
!! GAGATAAAACAACATTATTT+GGG + chr5_4:69918413-69918432 None:intergenic 20.0%
!! AGAGATAAAACAACATTATT+TGG + chr5_4:69918414-69918433 None:intergenic 20.0%
!!! TTTTAAGAAATTGGGTGAAA+TGG + chr5_4:69915876-69915895 None:intergenic 25.0%
!! TACAAGTTGTTGTTGAAAAT+TGG + chr5_4:69915905-69915924 None:intergenic 25.0%
! CAAGTATGAAAACCTTATAA+AGG + chr5_4:69915985-69916004 None:intergenic 25.0%
!! CTTTATAAGGTTTTCATACT+TGG - chr5_4:69915983-69916002 Msa0867200:intron 25.0%
!!! AGTTTTCAGCTTTTGATTAT+TGG - chr5_4:69916098-69916117 Msa0867200:intron 25.0%
!!! TTGTTTTTACATAATGGCTT+AGG - chr5_4:69916184-69916203 Msa0867200:intron 25.0%
!!! GGAAATTATATTTTAACTGC+AGG - chr5_4:69916590-69916609 Msa0867200:intron 25.0%
!!! TTTGAGGTTTTAATCTTTGA+TGG - chr5_4:69916819-69916838 Msa0867200:CDS 25.0%
!!! ATTTTATCAGTAGTTTTGAC+AGG + chr5_4:69917047-69917066 None:intergenic 25.0%
! GTTATAGATACTAAATAAGC+TGG + chr5_4:69917315-69917334 None:intergenic 25.0%
!!! GTTTTTTCCCCTTTTTATAA+TGG - chr5_4:69917426-69917445 Msa0867200:intron 25.0%
!! TTTAGGACCATTATAAAAAG+GGG + chr5_4:69917436-69917455 None:intergenic 25.0%
!!! CTTTAGGACCATTATAAAAA+GGG + chr5_4:69917437-69917456 None:intergenic 25.0%
!!! ACTTTAGGACCATTATAAAA+AGG + chr5_4:69917438-69917457 None:intergenic 25.0%
!! TTTTTATAATGGTCCTAAAG+TGG - chr5_4:69917437-69917456 Msa0867200:intron 25.0%
!! GTTTAGTATCGAATTAAGAT+AGG + chr5_4:69917492-69917511 None:intergenic 25.0%
! ACATCTAGTATGTATCTATT+TGG - chr5_4:69917530-69917549 Msa0867200:intron 25.0%
! AAAATTCATCATAGTGAATC+AGG + chr5_4:69917576-69917595 None:intergenic 25.0%
! ATTTGACAAAAAAAACTGGT+TGG + chr5_4:69917637-69917656 None:intergenic 25.0%
! TCAAATGACAAAAAGAAAAG+TGG + chr5_4:69917672-69917691 None:intergenic 25.0%
! AAAATGACATACTTTCTGAT+AGG - chr5_4:69917776-69917795 Msa0867200:intron 25.0%
! AACAAAATATGGAAAAGTTG+AGG + chr5_4:69918313-69918332 None:intergenic 25.0%
! GGTAAATTAAGAATCACAAA+AGG + chr5_4:69918389-69918408 None:intergenic 25.0%
! ATAAAACAACATTATTTGGG+AGG + chr5_4:69918410-69918429 None:intergenic 25.0%
!! CATTCATTTTAGTCTGTCAT+AGG + chr5_4:69915611-69915630 None:intergenic 30.0%
! AAAAAGGAAAGAAGGGTATA+GGG + chr5_4:69915732-69915751 None:intergenic 30.0%
!!! TTTTGGTTTGAGGAAGAAAA+AGG + chr5_4:69915748-69915767 None:intergenic 30.0%
!!! GGTGGTAGTTTTAAGAAATT+GGG + chr5_4:69915884-69915903 None:intergenic 30.0%
!!! TGGTGGTAGTTTTAAGAAAT+TGG + chr5_4:69915885-69915904 None:intergenic 30.0%
! AAGTTGTTGTTGAAAATTGG+TGG + chr5_4:69915902-69915921 None:intergenic 30.0%
ATAGAACTAACTGCAGTTAA+AGG + chr5_4:69916071-69916090 None:intergenic 30.0%
!! TAAGGGGGAAATTTTGATAT+TGG - chr5_4:69916396-69916415 Msa0867200:intron 30.0%
! ACGTATCTTTTAATCTCAGA+TGG - chr5_4:69916569-69916588 Msa0867200:intron 30.0%
TTCCTTGTCTTTAAGTACAA+CGG - chr5_4:69916786-69916805 Msa0867200:CDS 30.0%
TCTATAACTTTCTGATGTCA+TGG - chr5_4:69917327-69917346 Msa0867200:CDS 30.0%
AGATACTGATAAACCACTTT+AGG + chr5_4:69917453-69917472 None:intergenic 30.0%
ATCAGTATCTAATGATACAC+AGG - chr5_4:69917463-69917482 Msa0867200:intron 30.0%
TATGTCATCTGCTAAAGTTA+AGG + chr5_4:69917803-69917822 None:intergenic 30.0%
TTAACTTTAGCAGATGACAT+AGG - chr5_4:69917802-69917821 Msa0867200:intron 30.0%
ACATAAACTGCCTACAATTT+GGG + chr5_4:69917850-69917869 None:intergenic 30.0%
!! GGAAGAATCATTGTTTTGTT+TGG - chr5_4:69917971-69917990 Msa0867200:intron 30.0%
AAAAGTTGAGGTAAATGACT+GGG + chr5_4:69918301-69918320 None:intergenic 30.0%
ATCAAAACATTCAATGTCGA+TGG - chr5_4:69918339-69918358 Msa0867200:five_prime_UTR 30.0%
!! TAGGGCTTTAAACCCTTTAA+CGG + chr5_4:69915714-69915733 None:intergenic 35.0%
! GAAAAAGGAAAGAAGGGTAT+AGG + chr5_4:69915733-69915752 None:intergenic 35.0%
GAGGAAGAAAAAGGAAAGAA+GGG + chr5_4:69915739-69915758 None:intergenic 35.0%
TGAGGAAGAAAAAGGAAAGA+AGG + chr5_4:69915740-69915759 None:intergenic 35.0%
! GTTCAAAGTTGCAAGCTTTT+TGG + chr5_4:69915765-69915784 None:intergenic 35.0%
! CTGTTTGAAATGGAAGTAGA+TGG - chr5_4:69915802-69915821 Msa0867200:intron 35.0%
CTTGGGAAGAAGATATTTAC+TGG - chr5_4:69915833-69915852 Msa0867200:intron 35.0%
TTTATTATTCCTTTCCTGCC+TGG - chr5_4:69916326-69916345 Msa0867200:intron 35.0%
GATTTGAACCTTGAAGATTG+AGG - chr5_4:69916441-69916460 Msa0867200:intron 35.0%
TGTTGTAACCTCAATCTTCA+AGG + chr5_4:69916452-69916471 None:intergenic 35.0%
ACATGATTCACATACACTTG+AGG + chr5_4:69916486-69916505 None:intergenic 35.0%
AAGAACACAAACACATCTGT+TGG - chr5_4:69916924-69916943 Msa0867200:CDS 35.0%
GAAGTCAATACTGCTTCTAA+TGG - chr5_4:69916948-69916967 Msa0867200:CDS 35.0%
! TCACGAGAATTACCTTCTTT+TGG + chr5_4:69917206-69917225 None:intergenic 35.0%
AAAAGAAGGTAATTCTCGTG+AGG - chr5_4:69917205-69917224 Msa0867200:intron 35.0%
AAAGAAGGTAATTCTCGTGA+GGG - chr5_4:69917206-69917225 Msa0867200:intron 35.0%
! ACTAGTTTGTGCAATGAACA+TGG + chr5_4:69917408-69917427 None:intergenic 35.0%
ACTAGATGTTCGCATCAATT+GGG + chr5_4:69917519-69917538 None:intergenic 35.0%
TACTAGATGTTCGCATCAAT+TGG + chr5_4:69917520-69917539 None:intergenic 35.0%
CACATAAACTGCCTACAATT+TGG + chr5_4:69917851-69917870 None:intergenic 35.0%
AATTGTAGGCAGTTTATGTG+AGG - chr5_4:69917851-69917870 Msa0867200:intron 35.0%
AGTGAAAAGACACTATTCTC+TGG + chr5_4:69917997-69918016 None:intergenic 35.0%
CGAGAAATTAAAGAGAAACC+GGG + chr5_4:69918088-69918107 None:intergenic 35.0%
GCGAGAAATTAAAGAGAAAC+CGG + chr5_4:69918089-69918108 None:intergenic 35.0%
TGAATTGTTCAATTCCACAG+AGG - chr5_4:69918230-69918249 Msa0867200:five_prime_UTR 35.0%
GAAAAGTTGAGGTAAATGAC+TGG + chr5_4:69918302-69918321 None:intergenic 35.0%
!!! GTTGCAAGCTTTTTGGTTTG+AGG + chr5_4:69915758-69915777 None:intergenic 40.0%
AACAGAAGCAGAGAGTGAAA+TGG + chr5_4:69915787-69915806 None:intergenic 40.0%
CTCTCTGCTTCTGTTTGAAA+TGG - chr5_4:69915792-69915811 Msa0867200:intron 40.0%
AAGTAGATGGAAGCAGATCT+TGG - chr5_4:69915815-69915834 Msa0867200:intron 40.0%
AGTAGATGGAAGCAGATCTT+GGG - chr5_4:69915816-69915835 Msa0867200:intron 40.0%
TAGATAGTGTTTGCAGAACC+AGG + chr5_4:69916347-69916366 None:intergenic 40.0%
!! CCTTTAAGGGTCACATTTTC+TGG + chr5_4:69916657-69916676 None:intergenic 40.0%
CCAGAAAATGTGACCCTTAA+AGG - chr5_4:69916654-69916673 Msa0867200:intron 40.0%
!! ATTGGGTTGACAACTAGAGA+TGG - chr5_4:69916699-69916718 Msa0867200:intron 40.0%
AGATGGTACTGTTTACTTCG+TGG - chr5_4:69916716-69916735 Msa0867200:intron 40.0%
GATGGTACTGTTTACTTCGT+GGG - chr5_4:69916717-69916736 Msa0867200:intron 40.0%
CACCGTTGTACTTAAAGACA+AGG + chr5_4:69916791-69916810 None:intergenic 40.0%
! TGGAGTTAGTTTCTGTGAGA+AGG - chr5_4:69916839-69916858 Msa0867200:CDS 40.0%
GACATGCTCAAACTGAAGAA+GGG - chr5_4:69916889-69916908 Msa0867200:CDS 40.0%
ACATGCTCAAACTGAAGAAG+GGG - chr5_4:69916890-69916909 Msa0867200:CDS 40.0%
GTCAATACTGCTTCTAATGG+TGG - chr5_4:69916951-69916970 Msa0867200:CDS 40.0%
!! GTTTTGACAGGTACAGCTAA+TGG + chr5_4:69917035-69917054 None:intergenic 40.0%
TATTGAATCTGCTTCCCCTA+AGG - chr5_4:69917082-69917101 Msa0867200:CDS 40.0%
GTTGTTTGGGAAAGTAGATG+GGG + chr5_4:69917112-69917131 None:intergenic 40.0%
GGTTGTTTGGGAAAGTAGAT+GGG + chr5_4:69917113-69917132 None:intergenic 40.0%
TGGTTGTTTGGGAAAGTAGA+TGG + chr5_4:69917114-69917133 None:intergenic 40.0%
TACTTTCCCAAACAACCAAC+CGG - chr5_4:69917116-69917135 Msa0867200:CDS 40.0%
! AACTTCATTAGCTGGCTTCT+TGG + chr5_4:69917150-69917169 None:intergenic 40.0%
! CGAGAATTACCTTCTTTTGG+CGG + chr5_4:69917203-69917222 None:intergenic 40.0%
TGATTTGAGGGCTTCTAACA+AGG - chr5_4:69917235-69917254 Msa0867200:CDS 40.0%
AGGGAATAAGCCCAAATTGT+AGG - chr5_4:69917837-69917856 Msa0867200:intron 40.0%
AGAAACAGTAACAGAGAGGA+GGG - chr5_4:69917874-69917893 Msa0867200:intron 40.0%
!! GAGAATTAGTGGATTGCTTG+AGG - chr5_4:69917902-69917921 Msa0867200:intron 40.0%
!! TAGTGGATTGCTTGAGGATT+CGG - chr5_4:69917908-69917927 Msa0867200:intron 40.0%
! CTTGAGGATTCGGTTATATG+AGG - chr5_4:69917918-69917937 Msa0867200:intron 40.0%
! AGGATTCGGTTATATGAGGT+GGG - chr5_4:69917922-69917941 Msa0867200:intron 40.0%
!! TGTGTAGAGCATTGCTCTTT+GGG - chr5_4:69918016-69918035 Msa0867200:intron 40.0%
TAGCAATCTGACACTTGTCA+AGG - chr5_4:69918139-69918158 Msa0867200:CDS 40.0%
AGTCTGTCATAGGTCAACCT+AGG + chr5_4:69915601-69915620 None:intergenic 45.0%
TTCACGAGGAAGATGAATGG+TGG + chr5_4:69915691-69915710 None:intergenic 45.0%
TCTTCCTCGTGAACCGTTAA+AGG - chr5_4:69915698-69915717 Msa0867200:CDS 45.0%
CTTCCTCGTGAACCGTTAAA+GGG - chr5_4:69915699-69915718 Msa0867200:CDS 45.0%
AAACCCTTTAACGGTTCACG+AGG + chr5_4:69915705-69915724 None:intergenic 45.0%
TTCAAGGTTCAAATCCCCTC+GGG + chr5_4:69916436-69916455 None:intergenic 45.0%
CTTCAAGGTTCAAATCCCCT+CGG + chr5_4:69916437-69916456 None:intergenic 45.0%
AGCTCCACTAGGACCTTTAA+GGG + chr5_4:69916670-69916689 None:intergenic 45.0%
CAACGGTGAATCTCTCTTTG+AGG - chr5_4:69916803-69916822 Msa0867200:CDS 45.0%
GGACATGCTCAAACTGAAGA+AGG - chr5_4:69916888-69916907 Msa0867200:CDS 45.0%
CATGCTCAAACTGAAGAAGG+GGG - chr5_4:69916891-69916910 Msa0867200:CDS 45.0%
GTGGTTCACCTGAGAGATTT+CGG - chr5_4:69916982-69917001 Msa0867200:intron 45.0%
TGGTTCACCTGAGAGATTTC+GGG - chr5_4:69916983-69917002 Msa0867200:intron 45.0%
AGTAGATGGGGAGTTCCTTA+GGG + chr5_4:69917100-69917119 None:intergenic 45.0%
AAGTAGATGGGGAGTTCCTT+AGG + chr5_4:69917101-69917120 None:intergenic 45.0%
CCAGGTGTAACTTCATTAGC+TGG + chr5_4:69917158-69917177 None:intergenic 45.0%
CCAGCTAATGAAGTTACACC+TGG - chr5_4:69917155-69917174 Msa0867200:CDS 45.0%
!! TGAGGGAGCACTTGATTTGA+GGG - chr5_4:69917223-69917242 Msa0867200:CDS 45.0%
GCTTCTAACAAGGAACTCTC+AGG - chr5_4:69917245-69917264 Msa0867200:CDS 45.0%
! TGGTTGGCTACTCTGAGTTT+AGG + chr5_4:69917621-69917640 None:intergenic 45.0%
ACATAGGCCTGAGTGACAAA+GGG - chr5_4:69917818-69917837 Msa0867200:intron 45.0%
GCTTATTCCCTTTGTCACTC+AGG + chr5_4:69917828-69917847 None:intergenic 45.0%
GAGGAGAAACAGTAACAGAG+AGG - chr5_4:69917870-69917889 Msa0867200:intron 45.0%
GAGAAACAGTAACAGAGAGG+AGG - chr5_4:69917873-69917892 Msa0867200:intron 45.0%
GGAGGGAAAGTGAGAATTAG+TGG - chr5_4:69917891-69917910 Msa0867200:intron 45.0%
! GAGGATTCGGTTATATGAGG+TGG - chr5_4:69917921-69917940 Msa0867200:intron 45.0%
GTTATATGAGGTGGGAGTTG+TGG - chr5_4:69917930-69917949 Msa0867200:intron 45.0%
!! CTGTGTAGAGCATTGCTCTT+TGG - chr5_4:69918015-69918034 Msa0867200:intron 45.0%
GAGAAACCGGGAATTGCAAA+TGG + chr5_4:69918076-69918095 None:intergenic 45.0%
GTCAAGGTTATCGTCAGCAA+AGG - chr5_4:69918260-69918279 Msa0867200:five_prime_UTR 45.0%
GAACAACTCACCAGAATACG+TGG + chr5_4:69918366-69918385 None:intergenic 45.0%
CGGTTCACGAGGAAGATGAA+TGG + chr5_4:69915694-69915713 None:intergenic 50.0%
TTTGCAGAACCAGGCAGGAA+AGG + chr5_4:69916338-69916357 None:intergenic 50.0%
TAGTGTTTGCAGAACCAGGC+AGG + chr5_4:69916343-69916362 None:intergenic 50.0%
GTGACCCTTAAAGGTCCTAG+TGG - chr5_4:69916663-69916682 Msa0867200:intron 50.0%
CAGCTCCACTAGGACCTTTA+AGG + chr5_4:69916671-69916690 None:intergenic 50.0%
ATATCCCACACAGCTCCACT+AGG + chr5_4:69916681-69916700 None:intergenic 50.0%
AGTGGAGCTGTGTGGGATAT+TGG - chr5_4:69916681-69916700 Msa0867200:intron 50.0%
GTGGAGCTGTGTGGGATATT+GGG - chr5_4:69916682-69916701 Msa0867200:intron 50.0%
GGTACTGTTTACTTCGTGGG+CGG - chr5_4:69916720-69916739 Msa0867200:intron 50.0%
TGTTTACTTCGTGGGCGGTT+GGG - chr5_4:69916725-69916744 Msa0867200:intron 50.0%
AACTGAAGAAGGGGGTAGCA+AGG - chr5_4:69916899-69916918 Msa0867200:CDS 50.0%
!! TCTAATGGTGGCGTTGACTG+TGG - chr5_4:69916963-69916982 Msa0867200:CDS 50.0%
!! CACCTGAGAGATTTCGGGTT+CGG - chr5_4:69916988-69917007 Msa0867200:intron 50.0%
GTAGATGGGGAGTTCCTTAG+GGG + chr5_4:69917099-69917118 None:intergenic 50.0%
! CTTTGGCCGGTTGGTTGTTT+GGG + chr5_4:69917125-69917144 None:intergenic 50.0%
! TAGCTGGCTTCTTGGTCCTT+TGG + chr5_4:69917142-69917161 None:intergenic 50.0%
GTCTTCCTCGCTTCTTAGTC+TGG + chr5_4:69917181-69917200 None:intergenic 50.0%
!! GTGAGGGAGCACTTGATTTG+AGG - chr5_4:69917222-69917241 Msa0867200:CDS 50.0%
GACATAGGCCTGAGTGACAA+AGG - chr5_4:69917817-69917836 Msa0867200:intron 50.0%
AGCATTGCTCTTTGGGCTGT+AGG - chr5_4:69918023-69918042 Msa0867200:intron 50.0%
GCATTGCTCTTTGGGCTGTA+GGG - chr5_4:69918024-69918043 Msa0867200:intron 50.0%
CGCGTTCCATTTGCAATTCC+CGG - chr5_4:69918067-69918086 Msa0867200:intron 50.0%
TGTCGATGGTCCACGTATTC+TGG - chr5_4:69918353-69918372 Msa0867200:five_prime_UTR 50.0%
!! GCCATTTTCAACCGTCCCGA+GGG - chr5_4:69916418-69916437 Msa0867200:intron 55.0%
! CCATTTTCAACCGTCCCGAG+GGG - chr5_4:69916419-69916438 Msa0867200:intron 55.0%
AGGTTCAAATCCCCTCGGGA+CGG + chr5_4:69916432-69916451 None:intergenic 55.0%
AAGGTCCTAGTGGAGCTGTG+TGG - chr5_4:69916673-69916692 Msa0867200:intron 55.0%
AGGTCCTAGTGGAGCTGTGT+GGG - chr5_4:69916674-69916693 Msa0867200:intron 55.0%
CTGTTTACTTCGTGGGCGGT+TGG - chr5_4:69916724-69916743 Msa0867200:intron 55.0%
! CCTTTGGCCGGTTGGTTGTT+TGG + chr5_4:69917126-69917145 None:intergenic 55.0%
CCAAACAACCAACCGGCCAA+AGG - chr5_4:69917123-69917142 Msa0867200:CDS 55.0%
TTCTTGGTCCTTTGGCCGGT+TGG + chr5_4:69917134-69917153 None:intergenic 55.0%
TGGCTTCTTGGTCCTTTGGC+CGG + chr5_4:69917138-69917157 None:intergenic 55.0%
CGAGGAAGACCGCCAAAAGA+AGG - chr5_4:69917191-69917210 Msa0867200:intron 55.0%
ATGAGGTGGGAGTTGTGGAG+AGG - chr5_4:69917935-69917954 Msa0867200:intron 55.0%
TGGGAGTTGTGGAGAGGAAG+AGG - chr5_4:69917941-69917960 Msa0867200:intron 55.0%
GGGAGTTGTGGAGAGGAAGA+GGG - chr5_4:69917942-69917961 Msa0867200:intron 55.0%
!! GGCCATTTTCAACCGTCCCG+AGG - chr5_4:69916417-69916436 Msa0867200:intron 60.0%
CCCCTCGGGACGGTTGAAAA+TGG + chr5_4:69916422-69916441 None:intergenic 60.0%
CGCCGAACCCGAAATCTCTC+AGG + chr5_4:69916993-69917012 None:intergenic 60.0%
CCTCGCTTCTTAGTCTGGCC+AGG + chr5_4:69917176-69917195 None:intergenic 60.0%
CCTGGCCAGACTAAGAAGCG+AGG - chr5_4:69917173-69917192 Msa0867200:intron 60.0%
!! TGGAGAGGAAGAGGGCATCG+AGG - chr5_4:69917950-69917969 Msa0867200:intron 60.0%
CCTTGACTGTGCTGCCTCTG+TGG + chr5_4:69918247-69918266 None:intergenic 60.0%
CCACAGAGGCAGCACAGTCA+AGG - chr5_4:69918244-69918263 Msa0867200:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 69915598 69918437 69915598 ID=Msa0867200;Name=Msa0867200
chr5_4 mRNA 69915598 69918437 69915598 ID=Msa0867200-mRNA-1;Parent=Msa0867200;Name=Msa0867200-mRNA-1;_AED=0.37;_eAED=0.37;_QI=213|0.5|0.4|1|0.5|0.4|5|42|285
chr5_4 exon 69915598 69915785 69915598 ID=Msa0867200-mRNA-1:exon:22001;Parent=Msa0867200-mRNA-1
chr5_4 exon 69916769 69916996 69916769 ID=Msa0867200-mRNA-1:exon:22000;Parent=Msa0867200-mRNA-1
chr5_4 exon 69917015 69917174 69917015 ID=Msa0867200-mRNA-1:exon:21999;Parent=Msa0867200-mRNA-1
chr5_4 exon 69917211 69917423 69917211 ID=Msa0867200-mRNA-1:exon:21998;Parent=Msa0867200-mRNA-1
chr5_4 exon 69918114 69918437 69918114 ID=Msa0867200-mRNA-1:exon:21997;Parent=Msa0867200-mRNA-1
chr5_4 five_prime_UTR 69918225 69918437 69918225 ID=Msa0867200-mRNA-1:five_prime_utr;Parent=Msa0867200-mRNA-1
chr5_4 CDS 69918114 69918224 69918114 ID=Msa0867200-mRNA-1:cds;Parent=Msa0867200-mRNA-1
chr5_4 CDS 69917211 69917423 69917211 ID=Msa0867200-mRNA-1:cds;Parent=Msa0867200-mRNA-1
chr5_4 CDS 69917015 69917174 69917015 ID=Msa0867200-mRNA-1:cds;Parent=Msa0867200-mRNA-1
chr5_4 CDS 69916769 69916996 69916769 ID=Msa0867200-mRNA-1:cds;Parent=Msa0867200-mRNA-1
chr5_4 CDS 69915640 69915785 69915640 ID=Msa0867200-mRNA-1:cds;Parent=Msa0867200-mRNA-1
chr5_4 three_prime_UTR 69915598 69915639 69915598 ID=Msa0867200-mRNA-1:three_prime_utr;Parent=Msa0867200-mRNA-1
Gene Sequence

>Msa0867200

ATGGAAGTAGATGGAAGCAGATCTTGGGAAGAAGATATTTACTGGAATCATTTTCAGTTCATCCATTTCACCCAATTTCTTAAAACTACCACCAATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAAAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGCTGTGTGGGATATTGGGTTGACAACTAGAGATGGTACTGTTTACTTCGTGGGCGGTTGGGAGCAATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCTCTCTTTGAGGCAGCTTCTTATTTTGTTAGAAAATGTGGACATGCTCAAACTGAAGAAGGGGGTAGCAAGGTAAAGAACACAAACACATCTGTTGGAGAAGTCAATACTGCTTCTAATGGTGGCGTTGACTGTGGTTCACCTGAGAGATTTCGGGTTCGGCGTCTTGACACTGTACCTGTCAAAACTACTGATAAAATGACTTTAAATGCTTTTATTGAATCTGCTTCCCCTAAGGAACTCCCCATCTACTTTCCCAAACAACCAACCGGCCAAAGGACCAAGAAGCCAGCTAATGAAGTTACACCTGGCCAGACTAAGAAGCGAGGAAGACCGCCAAAAGAAGGTAATTCTCGTGAGGGAGCACTTGATTTGAGGGCTTCTAACAAGGAACTCTCAGAGGCAGCACAGTCAAGGTTATCGTCAGCAAAGGATGAGAAAAAGTTAGCCCAGTCATTTACCTCAACTTTTCCATATTTTGTTAAAATAATCAAAACATTCAATGTCGATGGTCCACGTATTCTGGTGAGTTGTTCCCTTTTGTGA

Protein sequence

>Msa0867200

MEVDGSRSWEEDIYWNHFQFIHFTQFLKTTTNFQQQLALPKTFSDNLKKKLPENVTLKGPSGAVWDIGLTTRDGTVYFVGGWEQFVKDHSLKENDFLVFKYNGESLFEAASYFVRKCGHAQTEEGGSKVKNTNTSVGEVNTASNGGVDCGSPERFRVRRLDTVPVKTTDKMTLNAFIESASPKELPIYFPKQPTGQRTKKPANEVTPGQTKKRGRPPKEGNSREGALDLRASNKELSEAAQSRLSSAKDEKKLAQSFTSTFPYFVKIIKTFNVDGPRILVSCSLL*