Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867380 | XP_003625373.2 | 92.203 | 513 | 13 | 1 | 1 | 513 | 1 | 486 | 0.0 | 963 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867380 | sp|Q93ZR3|PR39A_ARATH | 62.919 | 418 | 115 | 5 | 109 | 513 | 37 | 427 | 1.35e-177 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867380 | G7KXF7 | 92.203 | 513 | 13 | 1 | 1 | 513 | 1 | 486 | 0.0 | 963 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0120140 | Msa0867380 | 0.800970 | 1.122418e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867380 | MtrunA17_Chr7g0262021 | 96.169 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 0.0 | 510 |
| Msa0867380 | MtrunA17_Chr7g0262031 | 89.109 | 202 | 18 | 1 | 264 | 465 | 2 | 199 | 8.80e-127 | 369 |
| Msa0867380 | MtrunA17_Chr8g0380161 | 40.548 | 365 | 179 | 4 | 158 | 515 | 18 | 351 | 1.05e-84 | 285 |
| Msa0867380 | MtrunA17_Chr7g0262041 | 92.157 | 51 | 4 | 0 | 463 | 513 | 11 | 61 | 1.95e-24 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867380 | AT1G04080.4 | 62.919 | 418 | 115 | 5 | 109 | 513 | 37 | 427 | 1.37e-178 | 522 |
| Msa0867380 | AT1G04080.1 | 62.919 | 418 | 115 | 5 | 109 | 513 | 37 | 427 | 1.37e-178 | 522 |
| Msa0867380 | AT1G04080.3 | 54.316 | 475 | 118 | 8 | 109 | 513 | 37 | 482 | 5.84e-160 | 476 |
| Msa0867380 | AT1G04080.2 | 67.220 | 241 | 69 | 2 | 283 | 513 | 1 | 241 | 3.77e-105 | 327 |
| Msa0867380 | AT5G46400.1 | 42.588 | 371 | 166 | 7 | 154 | 513 | 30 | 364 | 4.50e-87 | 290 |
| Msa0867380 | AT1G04080.5 | 66.346 | 208 | 60 | 2 | 316 | 513 | 1 | 208 | 3.09e-86 | 277 |
| Msa0867380 | AT5G46400.2 | 50.407 | 123 | 58 | 1 | 391 | 513 | 25 | 144 | 6.58e-33 | 134 |
| Msa0867380 | AT5G46400.3 | 50.407 | 123 | 58 | 1 | 391 | 513 | 25 | 144 | 6.58e-33 | 134 |
Find 129 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTATGCATTTACTTATTC+TGG | 0.134991 | 6_1:-119726 | Msa0867380:CDS |
| GCTTCTCCTGCAGCCTCGGC+TGG | 0.142915 | 6_1:+119771 | None:intergenic |
| ACGCCTTCACTTATACAAAA+TGG | 0.200393 | 6_1:+115515 | None:intergenic |
| TATCGATCCAATTGCTGATT+TGG | 0.218895 | 6_1:+117068 | None:intergenic |
| ATTTGGATTCTCTAATATTC+TGG | 0.228707 | 6_1:+117085 | None:intergenic |
| TGAGCTTGTAGTACAGAATT+AGG | 0.232263 | 6_1:+119675 | None:intergenic |
| CAGAATTCCCTTTGTGTTAT+GGG | 0.232733 | 6_1:-118003 | Msa0867380:CDS |
| ATTATCTTTCGTTTCCTCTT+TGG | 0.236191 | 6_1:-117169 | Msa0867380:CDS |
| ACGTACGACCTCTTAATATT+GGG | 0.271534 | 6_1:-116588 | Msa0867380:CDS |
| TGAAAACTGGCATAATTATC+TGG | 0.271539 | 6_1:-116560 | Msa0867380:CDS |
| CTTATACATCTCTTCTCTAA+TGG | 0.271968 | 6_1:+116675 | None:intergenic |
| GATACAGTTGGACTTGAAAA+TGG | 0.279480 | 6_1:-119525 | Msa0867380:CDS |
| CACGTACGACCTCTTAATAT+TGG | 0.285155 | 6_1:-116589 | Msa0867380:CDS |
| CTTCTCCTGCAGCCTCGGCT+GGG | 0.286804 | 6_1:+119772 | None:intergenic |
| TTATCTTTCGTTTCCTCTTT+GGG | 0.287270 | 6_1:-117168 | Msa0867380:CDS |
| GCTGCTGCTCTGCCCAATTC+AGG | 0.288615 | 6_1:-119747 | Msa0867380:CDS |
| GCAGAATTCCCTTTGTGTTA+TGG | 0.289100 | 6_1:-118004 | Msa0867380:CDS |
| GCTGACCATTCATCTGTAAA+TGG | 0.289348 | 6_1:-119555 | Msa0867380:CDS |
| AATACAGCACTTGCAGGTTT+AGG | 0.295664 | 6_1:+116730 | None:intergenic |
| AGTAAATGCATAGCCTGAAT+TGG | 0.309418 | 6_1:+119734 | None:intergenic |
| TCCCTTTGTGTTATGGGTAT+TGG | 0.321785 | 6_1:-117997 | Msa0867380:CDS |
| TATCCAGTACTCGGGATAAT+TGG | 0.333216 | 6_1:+115974 | None:intergenic |
| ATCGACCTCTTTCAGAATTA+CGG | 0.355782 | 6_1:-116849 | Msa0867380:CDS |
| TATGGAAGCTAGGGAAAGTA+TGG | 0.382672 | 6_1:-115937 | Msa0867380:CDS |
| TCTGTTAATACAGCACTTGC+AGG | 0.384276 | 6_1:+116724 | None:intergenic |
| ATGAGTACATGCAGCAAGAC+TGG | 0.385484 | 6_1:-117130 | Msa0867380:CDS |
| CCTGCAGCCTCGGCTGGGGC+AGG | 0.390779 | 6_1:+119777 | None:intergenic |
| ACTTATACAAAATGGGTCAT+TGG | 0.393894 | 6_1:+115523 | None:intergenic |
| AGCAGCTTCTCCTGCAGCCT+CGG | 0.403142 | 6_1:+119767 | None:intergenic |
| GATGAAGCTGCTGCAGTGGC+AGG | 0.405134 | 6_1:-116820 | Msa0867380:CDS |
| TTCTCCTGCAGCCTCGGCTG+GGG | 0.420645 | 6_1:+119773 | None:intergenic |
| CGCCTTCACTTATACAAAAT+GGG | 0.420647 | 6_1:+115516 | None:intergenic |
| GGAGAATTATCTGCACCATC+AGG | 0.426487 | 6_1:+116751 | None:intergenic |
| TATTACCTACGAACTGTGTC+TGG | 0.428305 | 6_1:+117833 | None:intergenic |
| TTAGCACCAACCTTGGGAAC+AGG | 0.431376 | 6_1:+119804 | None:intergenic |
| TAAATGGTGTTGCAGCTTCA+AGG | 0.434451 | 6_1:-116884 | Msa0867380:intron |
| CCTGCCCCAGCCGAGGCTGC+AGG | 0.435556 | 6_1:-119777 | Msa0867380:CDS |
| GCATTTACTTATTCTGGTGA+TGG | 0.435692 | 6_1:-119720 | Msa0867380:CDS |
| GATGGGAATGCTTATACTGC+TGG | 0.441620 | 6_1:-119702 | Msa0867380:CDS |
| AATTGGATCGATATTTCAAC+AGG | 0.444059 | 6_1:-117058 | Msa0867380:intron |
| TTATGGCGGAAAAGCTTTGA+TGG | 0.444879 | 6_1:-117687 | Msa0867380:CDS |
| AGAGAATCCAAATCAGCAAT+TGG | 0.448924 | 6_1:-117075 | Msa0867380:CDS |
| ATATTGGGGAGCTTGAAAAC+TGG | 0.459736 | 6_1:-116573 | Msa0867380:CDS |
| TCTGGTTGGAAAGGAAGCTC+TGG | 0.463748 | 6_1:-119595 | Msa0867380:CDS |
| GAGTTCGATTCTAAGATCAT+TGG | 0.466817 | 6_1:-116643 | Msa0867380:CDS |
| CATTTACTTATTCTGGTGAT+GGG | 0.468008 | 6_1:-119719 | Msa0867380:CDS |
| CACTTCCATTTACAGATGAA+TGG | 0.468952 | 6_1:+119550 | None:intergenic |
| AGGATGGAAATTTGCGAAGT+AGG | 0.470451 | 6_1:+120568 | None:intergenic |
| GTACATAAGATTTCTATTCT+CGG | 0.471069 | 6_1:+115555 | None:intergenic |
| TCGAATCCTGTTCCCAAGGT+TGG | 0.472109 | 6_1:-119810 | Msa0867380:CDS |
| AACGAGTCAAAGCAAGCTGC+TGG | 0.475326 | 6_1:-119639 | Msa0867380:CDS |
| TCAAGCTCCCCAATATTAAG+AGG | 0.477060 | 6_1:+116580 | None:intergenic |
| GTTTATGAACGAGCTGTTCA+AGG | 0.479117 | 6_1:-117920 | Msa0867380:CDS |
| GAACGAGGATTAGCTTATGT+TGG | 0.479715 | 6_1:-117197 | Msa0867380:CDS |
| GGATGGAAATTTGCGAAGTA+GGG | 0.480324 | 6_1:+120569 | None:intergenic |
| AGCTTCCTTTCCAACCAGAC+TGG | 0.482155 | 6_1:+119599 | None:intergenic |
| TGCAAATAATGTTCTCGCTC+GGG | 0.483808 | 6_1:-115910 | Msa0867380:CDS |
| GTAAATGCATAGCCTGAATT+GGG | 0.486099 | 6_1:+119735 | None:intergenic |
| GTGCCAATTATCCCGAGTAC+TGG | 0.494096 | 6_1:-115977 | Msa0867380:CDS |
| GCCTAATGAGGATTCCAGTC+TGG | 0.497327 | 6_1:-119613 | Msa0867380:CDS |
| ATTAACAGAAGCAGAAGAGT+TGG | 0.497386 | 6_1:-116710 | Msa0867380:CDS |
| TCCAATACCCATAACACAAA+GGG | 0.499353 | 6_1:+117996 | None:intergenic |
| AAGAGGTCGTACGTGAAAGT+AGG | 0.516439 | 6_1:+116597 | None:intergenic |
| TATGGCGGAAAAGCTTTGAT+GGG | 0.517228 | 6_1:-117686 | Msa0867380:CDS |
| GGTACTGACCAAGGTGTTGA+AGG | 0.517289 | 6_1:-116784 | Msa0867380:CDS |
| CAGAGCCAAGGCGCGCCTCA+TGG | 0.522186 | 6_1:+117960 | None:intergenic |
| CGAGACAGAGAAGGTGGCAG+AGG | 0.524685 | 6_1:-118493 | Msa0867380:intron |
| GGAACATTAGCACCAACCTT+GGG | 0.526018 | 6_1:+119798 | None:intergenic |
| CAAGGATTTAAACATCAGAA+TGG | 0.529815 | 6_1:+117643 | None:intergenic |
| TTGCAAATAATGTTCTCGCT+CGG | 0.532036 | 6_1:-115911 | Msa0867380:CDS |
| CGCTTCGAATCCTGTTCCCA+AGG | 0.532298 | 6_1:-119814 | Msa0867380:CDS |
| GTGTTGCAGCTTCAAGGAGT+TGG | 0.532516 | 6_1:-116878 | Msa0867380:intron |
| ATGGGAATGCTTATACTGCT+GGG | 0.536210 | 6_1:-119701 | Msa0867380:CDS |
| ACCAGACTGGAATCCTCATT+AGG | 0.536266 | 6_1:+119612 | None:intergenic |
| AGGAACATTAGCACCAACCT+TGG | 0.537288 | 6_1:+119797 | None:intergenic |
| AACATAGCGTATCCAGTACT+CGG | 0.538429 | 6_1:+115965 | None:intergenic |
| TCAATGTATTTATCCCAAAG+AGG | 0.538798 | 6_1:+117155 | None:intergenic |
| ATATTCGCTATAAGCACCTA+TGG | 0.541316 | 6_1:-117860 | Msa0867380:CDS |
| TAAATATATCGCTGATGATG+TGG | 0.547668 | 6_1:+120616 | None:intergenic |
| GCTGTCCGTAATTCTGAAAG+AGG | 0.548224 | 6_1:+116844 | None:intergenic |
| GTGGCAGGTGTTGTTTCAGA+GGG | 0.550122 | 6_1:-116805 | Msa0867380:CDS |
| AATGCATCAGAGAATGTTGA+TGG | 0.550820 | 6_1:-119501 | Msa0867380:CDS |
| AGTGGCAGGTGTTGTTTCAG+AGG | 0.553746 | 6_1:-116806 | Msa0867380:CDS |
| AAACAACTCACAGATGCTTA+CGG | 0.557128 | 6_1:-119465 | Msa0867380:intron |
| AGCTGATGAAGCTGCTGCAG+TGG | 0.558284 | 6_1:-116824 | Msa0867380:CDS |
| GGTGTAAATCATTGCAAGGC+GGG | 0.558474 | 6_1:+117106 | None:intergenic |
| AACTGTGTCTGGATCTCCAT+AGG | 0.560352 | 6_1:+117844 | None:intergenic |
| TTTATGAACGAGCTGTTCAA+GGG | 0.561629 | 6_1:-117919 | Msa0867380:CDS |
| AATGAGGATTCCAGTCTGGT+TGG | 0.562814 | 6_1:-119609 | Msa0867380:CDS |
| AGAGGTCGTACGTGAAAGTA+GGG | 0.564513 | 6_1:+116598 | None:intergenic |
| GGAAGCTCTGGACTCTGCTA+TGG | 0.564721 | 6_1:-119583 | Msa0867380:CDS |
| GGATTCCAGTCTGGTTGGAA+AGG | 0.569228 | 6_1:-119604 | Msa0867380:CDS |
| TTTGATTGACGAGACAGAGA+AGG | 0.570064 | 6_1:-118502 | Msa0867380:CDS |
| TAATGTTCCTGCCCCAGCCG+AGG | 0.579939 | 6_1:-119784 | Msa0867380:CDS |
| AAGAGAAGGCGACTTGAGCA+AGG | 0.580408 | 6_1:-116527 | Msa0867380:intron |
| TTCTGGTGTAAATCATTGCA+AGG | 0.581222 | 6_1:+117102 | None:intergenic |
| AGCTGCTGGAGTGCCTAATG+AGG | 0.586064 | 6_1:-119625 | Msa0867380:CDS |
| TGCTGCTGAGACGTATCCAT+CGG | 0.586175 | 6_1:-119853 | Msa0867380:CDS |
| TTCTATTCTCGGCTAAACGA+AGG | 0.588400 | 6_1:+115566 | None:intergenic |
| AATGGAAGTGTTGATACAGT+TGG | 0.591174 | 6_1:-119537 | Msa0867380:CDS |
| TGAGTACATGCAGCAAGACT+GGG | 0.596076 | 6_1:-117129 | Msa0867380:CDS |
| CAACTTTATCAGCAGAGCCA+AGG | 0.596207 | 6_1:+117948 | None:intergenic |
| CGTACGACCTCTTAATATTG+GGG | 0.599762 | 6_1:-116587 | Msa0867380:CDS |
| TTACATATTCAGTGGACATG+TGG | 0.600677 | 6_1:-117895 | Msa0867380:CDS |
| AAAGTAGAACCTCACACGCT+CGG | 0.600943 | 6_1:-120594 | Msa0867380:five_prime_UTR |
| TCAAGGGGTTACATATTCAG+TGG | 0.607137 | 6_1:-117903 | Msa0867380:CDS |
| TTCCAATACCCATAACACAA+AGG | 0.612695 | 6_1:+117995 | None:intergenic |
| AACACAAAGGGAATTCTGCT+AGG | 0.613157 | 6_1:+118008 | None:intergenic |
| TATGGGAGATAGTGAAACAA+TGG | 0.615550 | 6_1:-119889 | Msa0867380:CDS |
| TGACCAAGGTGTTGAAGGAG+AGG | 0.619456 | 6_1:-116779 | Msa0867380:CDS |
| GTGTTGTTGTAAGCATCCGA+TGG | 0.622239 | 6_1:+119837 | None:intergenic |
| ACATAGCGTATCCAGTACTC+GGG | 0.622860 | 6_1:+115966 | None:intergenic |
| ATCAGAGAATGTTGATGGGT+CGG | 0.627186 | 6_1:-119496 | Msa0867380:CDS |
| CTGCTGAAGAAGATCGATTG+TGG | 0.627715 | 6_1:-118569 | Msa0867380:CDS |
| GATTGACGAGACAGAGAAGG+TGG | 0.630394 | 6_1:-118499 | Msa0867380:CDS |
| GTACTCGGGATAATTGGCAC+AGG | 0.638207 | 6_1:+115980 | None:intergenic |
| GTTTCAGAGGGTACTGACCA+AGG | 0.640522 | 6_1:-116793 | Msa0867380:CDS |
| AAGGAGATGGTACTGTTGCA+CGG | 0.643920 | 6_1:+117711 | None:intergenic |
| GAAGGAGAGGTTCATCCTGA+TGG | 0.646457 | 6_1:-116766 | Msa0867380:CDS |
| GAACCTCTCCTTCAACACCT+TGG | 0.647061 | 6_1:+116776 | None:intergenic |
| ATGCATCAGAGAATGTTGAT+GGG | 0.647426 | 6_1:-119500 | Msa0867380:CDS |
| AAATATATCGCTGATGATGT+GGG | 0.655302 | 6_1:+120617 | None:intergenic |
| TTATGAACGAGCTGTTCAAG+GGG | 0.665698 | 6_1:-117918 | Msa0867380:CDS |
| GAGATCCAGACACAGTTCGT+AGG | 0.679080 | 6_1:-117838 | Msa0867380:intron |
| TGGGAATGCTTATACTGCTG+GGG | 0.686552 | 6_1:-119700 | Msa0867380:CDS |
| AAAATGGGTCATTGGCAACG+CGG | 0.689260 | 6_1:+115531 | None:intergenic |
| GAAGAAATATGCTGACCATG+AGG | 0.691106 | 6_1:-117975 | Msa0867380:CDS |
| TGGTGTAAATCATTGCAAGG+CGG | 0.722048 | 6_1:+117105 | None:intergenic |
| CTTGGGAACAGGATTCGAAG+CGG | 0.730245 | 6_1:+119815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTGTTAATAAAAAAAT+CGG | - | chr6_1:116785-116804 | Msa0867380:CDS | 10.0% |
| !!! | ATTTTATGTTTTGTTTTTTG+TGG | - | chr6_1:116216-116235 | Msa0867380:intron | 15.0% |
| !! | ATATAATAACTAGGTTTATT+AGG | - | chr6_1:117258-117277 | Msa0867380:intron | 15.0% |
| !!! | ACATTTTTTTTCCATTTTAT+TGG | - | chr6_1:117304-117323 | Msa0867380:intron | 15.0% |
| !!! | ATGTATAGTAATTGAAATTT+TGG | - | chr6_1:118542-118561 | Msa0867380:CDS | 15.0% |
| !!! | TGTATAGTAATTGAAATTTT+GGG | - | chr6_1:118543-118562 | Msa0867380:CDS | 15.0% |
| !! | ATCAAATTGAAAAGTTTATA+GGG | + | chr6_1:118578-118597 | None:intergenic | 15.0% |
| !! | AATCAAATTGAAAAGTTTAT+AGG | + | chr6_1:118579-118598 | None:intergenic | 15.0% |
| !!! | TAGTAATTGTGTTTATTTTT+TGG | + | chr6_1:119162-119181 | None:intergenic | 15.0% |
| !! | TATGTTTATATGATTTCTTT+AGG | - | chr6_1:120519-120538 | Msa0867380:five_prime_UTR | 15.0% |
| !! | ATGTTTATATGATTTCTTTA+GGG | - | chr6_1:120520-120539 | Msa0867380:five_prime_UTR | 15.0% |
| !! | ACTTATTTGAACTTATTTAG+TGG | - | chr6_1:115922-115941 | Msa0867380:CDS | 20.0% |
| !!! | GTTTTTTTTCATAAGCTATT+TGG | + | chr6_1:116069-116088 | None:intergenic | 20.0% |
| !! | CTATTCTATAGCAAAAAAAT+TGG | + | chr6_1:116124-116143 | None:intergenic | 20.0% |
| !! | CAAATTTCTACAATTACAAT+TGG | + | chr6_1:116190-116209 | None:intergenic | 20.0% |
| !! | CAATTGTAATTGTAGAAATT+TGG | - | chr6_1:116188-116207 | Msa0867380:intron | 20.0% |
| !! | GTAATATAATTAACCAATGA+TGG | - | chr6_1:116842-116861 | Msa0867380:CDS | 20.0% |
| !! | TTATTTCCATTCATGAATAT+TGG | + | chr6_1:116993-117012 | None:intergenic | 20.0% |
| !! | ACCATATTGATATAATAACT+AGG | - | chr6_1:117249-117268 | Msa0867380:intron | 20.0% |
| !! | ACCTAGTTATTATATCAATA+TGG | + | chr6_1:117253-117272 | None:intergenic | 20.0% |
| !! | AATATTAAAAACAAGACGTA+TGG | + | chr6_1:117466-117485 | None:intergenic | 20.0% |
| !! | TAATTCACGTCTTAAAAATT+GGG | + | chr6_1:117694-117713 | None:intergenic | 20.0% |
| !!! | TTGATTTATTTTATGACTCA+TGG | - | chr6_1:118051-118070 | Msa0867380:intron | 20.0% |
| !!! | ACCTTATTATTTTCTATGAT+CGG | - | chr6_1:118356-118375 | Msa0867380:intron | 20.0% |
| !! | ATTTCAATTACTATACATAG+TGG | + | chr6_1:118540-118559 | None:intergenic | 20.0% |
| !! | TCAAATTGAAAAGTTTATAG+GGG | + | chr6_1:118577-118596 | None:intergenic | 20.0% |
| ! | AATTGAATATAGAATCCCTA+GGG | + | chr6_1:115752-115771 | None:intergenic | 25.0% |
| ! | ATTCATTCGATTAGATTTAC+TGG | - | chr6_1:115830-115849 | Msa0867380:intron | 25.0% |
| ! | TTATCTGATATTGTTATCTC+AGG | - | chr6_1:115876-115895 | Msa0867380:intron | 25.0% |
| ! | TATCTGATATTGTTATCTCA+GGG | - | chr6_1:115877-115896 | Msa0867380:intron | 25.0% |
| ! | TGAATTGAAATAATCCAAAC+AGG | + | chr6_1:115903-115922 | None:intergenic | 25.0% |
| ! | AAAACTTATTCCACTACATA+AGG | + | chr6_1:115966-115985 | None:intergenic | 25.0% |
| !!! | TCAGATTTTTTGTTCAAGTA+TGG | - | chr6_1:116241-116260 | Msa0867380:intron | 25.0% |
| !!! | CAGATTTTTTGTTCAAGTAT+GGG | - | chr6_1:116242-116261 | Msa0867380:intron | 25.0% |
| !! | TTTTCACCAATATTCATGAA+TGG | - | chr6_1:116984-117003 | Msa0867380:intron | 25.0% |
| !!! | AGCTTTATTTTTTCATGCAT+TGG | - | chr6_1:117143-117162 | Msa0867380:CDS | 25.0% |
| !!! | TTTATTTTTTCATGCATTGG+AGG | - | chr6_1:117146-117165 | Msa0867380:CDS | 25.0% |
| ! | GTAATTCACGTCTTAAAAAT+TGG | + | chr6_1:117695-117714 | None:intergenic | 25.0% |
| ! | GGAAAAAATAATATACTAGC+AGG | + | chr6_1:117955-117974 | None:intergenic | 25.0% |
| ! | TCCGATCATAGAAAATAATA+AGG | + | chr6_1:118360-118379 | None:intergenic | 25.0% |
| !! | TTTTTATCTTTGACACTATG+AGG | - | chr6_1:118664-118683 | Msa0867380:intron | 25.0% |
| ! | ATTTGGATTCTCTAATATTC+TGG | + | chr6_1:119066-119085 | None:intergenic | 25.0% |
| !!! | TTTTTTGGAAACAAATGAAG+TGG | + | chr6_1:119147-119166 | None:intergenic | 25.0% |
| !! | GGATGAAGAAACTTTTTAAT+CGG | - | chr6_1:119763-119782 | Msa0867380:CDS | 25.0% |
| !! | GATGAAGAAACTTTTTAATC+GGG | - | chr6_1:119764-119783 | Msa0867380:CDS | 25.0% |
| !!! | TTTTCTTGTTTTGTTGTTTG+TGG | - | chr6_1:120109-120128 | Msa0867380:intron | 25.0% |
| ! | AAATTACCTTGACAAAAACT+TGG | + | chr6_1:120268-120287 | None:intergenic | 25.0% |
| ! | AATTCACTTAGCTTAAAAAC+AGG | + | chr6_1:120356-120375 | None:intergenic | 25.0% |
| !!! | TGTTTTTAAGCTAAGTGAAT+TGG | - | chr6_1:120355-120374 | Msa0867380:intron | 25.0% |
| ! | CAAGAAACACACATATATAA+TGG | - | chr6_1:120378-120397 | Msa0867380:intron | 25.0% |
| ! | TTTCATGAACTATTATCCTA+TGG | + | chr6_1:120412-120431 | None:intergenic | 25.0% |
| ! | TTTGTTTACCTGATTGTAAA+TGG | - | chr6_1:120468-120487 | Msa0867380:intron | 25.0% |
| ! | GTACATAAGATTTCTATTCT+CGG | + | chr6_1:120596-120615 | None:intergenic | 25.0% |
| ! | AAATATATCGCTGATGATGT+GGG | + | chr6_1:115534-115553 | None:intergenic | 30.0% |
| ! | TAAATATATCGCTGATGATG+TGG | + | chr6_1:115535-115554 | None:intergenic | 30.0% |
| TTTACCACCAAAAACATCAT+CGG | - | chr6_1:115606-115625 | Msa0867380:intron | 30.0% | |
| CAATTGAATATAGAATCCCT+AGG | + | chr6_1:115753-115772 | None:intergenic | 30.0% | |
| CATGATACGAAAACAGAATT+TGG | + | chr6_1:115809-115828 | None:intergenic | 30.0% | |
| ACTTATTTGACCTTATGTAG+TGG | - | chr6_1:115953-115972 | Msa0867380:CDS | 30.0% | |
| !!! | GTAGTGGAATAAGTTTTGTT+AGG | - | chr6_1:115969-115988 | Msa0867380:CDS | 30.0% |
| CATTTACTTATTCTGGTGAT+GGG | - | chr6_1:116429-116448 | Msa0867380:intron | 30.0% | |
| TGTTATGTTAGCATACTCTT+CGG | - | chr6_1:116727-116746 | Msa0867380:CDS | 30.0% | |
| AAAATCGGAGTTCAATGTTA+AGG | - | chr6_1:116800-116819 | Msa0867380:CDS | 30.0% | |
| AAATCGGAGTTCAATGTTAA+GGG | - | chr6_1:116801-116820 | Msa0867380:CDS | 30.0% | |
| AACCAGCAAATAGTTCATTT+AGG | - | chr6_1:116899-116918 | Msa0867380:intron | 30.0% | |
| AACAATAGTGTTGTCAATTG+TGG | - | chr6_1:117035-117054 | Msa0867380:intron | 30.0% | |
| TCACTTGAGACAAAAACAAA+TGG | + | chr6_1:117190-117209 | None:intergenic | 30.0% | |
| !!! | AGTGACTTTGAAATTTTTCC+AGG | - | chr6_1:117205-117224 | Msa0867380:CDS | 30.0% |
| ! | TGTCTTCTATTTTACTGAGT+TGG | - | chr6_1:117408-117427 | Msa0867380:intron | 30.0% |
| ! | ATTGCTGTTCAACCAAATTA+TGG | - | chr6_1:117513-117532 | Msa0867380:intron | 30.0% |
| TTAGCAGCAAAACCATAATT+TGG | + | chr6_1:117528-117547 | None:intergenic | 30.0% | |
| ! | ATTCTTCTGATTTTACTGCT+TGG | - | chr6_1:117618-117637 | Msa0867380:intron | 30.0% |
| ATACTACGTGTTTAATGAGA+TGG | - | chr6_1:117797-117816 | Msa0867380:intron | 30.0% | |
| TTAAACCTGCATCTGTTTAA+CGG | - | chr6_1:117841-117860 | Msa0867380:CDS | 30.0% | |
| TAATGTACACACAAGTTATG+TGG | - | chr6_1:117888-117907 | Msa0867380:CDS | 30.0% | |
| AATGTACACACAAGTTATGT+GGG | - | chr6_1:117889-117908 | Msa0867380:CDS | 30.0% | |
| CTACAAGTATCTCGTAATAA+GGG | + | chr6_1:117986-118005 | None:intergenic | 30.0% | |
| ACTACAAGTATCTCGTAATA+AGG | + | chr6_1:117987-118006 | None:intergenic | 30.0% | |
| TACGAGATACTTGTAGTTAT+AGG | - | chr6_1:117990-118009 | Msa0867380:CDS | 30.0% | |
| ACTTGTAGTTATAGGTTTAG+TGG | - | chr6_1:117998-118017 | Msa0867380:CDS | 30.0% | |
| ! | GATCGGATTTTCTATTTACT+AGG | - | chr6_1:118373-118392 | Msa0867380:intron | 30.0% |
| CAAGGATTTAAACATCAGAA+TGG | + | chr6_1:118508-118527 | None:intergenic | 30.0% | |
| CATTCTGATGTTTAAATCCT+TGG | - | chr6_1:118506-118525 | Msa0867380:CDS | 30.0% | |
| GAAAAGTTTATAGGGGAAAA+TGG | + | chr6_1:118570-118589 | None:intergenic | 30.0% | |
| TTTCAAACTTCATAGTTGTG+TGG | - | chr6_1:118597-118616 | Msa0867380:intron | 30.0% | |
| !!! | GACATTGTATGATTTTTTGC+AGG | - | chr6_1:118767-118786 | Msa0867380:intron | 30.0% |
| !!! | TTGTATGATTTTTTGCAGGA+AGG | - | chr6_1:118771-118790 | Msa0867380:intron | 30.0% |
| ATTATCTTTCGTTTCCTCTT+TGG | - | chr6_1:118979-118998 | Msa0867380:intron | 30.0% | |
| TTATCTTTCGTTTCCTCTTT+GGG | - | chr6_1:118980-118999 | Msa0867380:intron | 30.0% | |
| TCAATGTATTTATCCCAAAG+AGG | + | chr6_1:118996-119015 | None:intergenic | 30.0% | |
| AATTGGATCGATATTTCAAC+AGG | - | chr6_1:119090-119109 | Msa0867380:intron | 30.0% | |
| ! | AGCGTTGAAGTAATTTAGTT+CGG | + | chr6_1:119243-119262 | None:intergenic | 30.0% |
| AATTACTTCAACGCTGTAAA+TGG | - | chr6_1:119248-119267 | Msa0867380:intron | 30.0% | |
| CTTATACATCTCTTCTCTAA+TGG | + | chr6_1:119476-119495 | None:intergenic | 30.0% | |
| !!! | TTGGTTTTGAAACAACTATC+AGG | - | chr6_1:119524-119543 | Msa0867380:CDS | 30.0% |
| TGAAAACTGGCATAATTATC+TGG | - | chr6_1:119588-119607 | Msa0867380:CDS | 30.0% | |
| ! | CTGGATTTTATAGAAAGAGA+AGG | - | chr6_1:119607-119626 | Msa0867380:CDS | 30.0% |
| ACTGTAAGTCAATCTATAAC+AGG | + | chr6_1:119692-119711 | None:intergenic | 30.0% | |
| TTTGCTTGCATTTACATTGT+TGG | - | chr6_1:120066-120085 | Msa0867380:intron | 30.0% | |
| ! | AAAACTACAGCTTTGACATT+TGG | + | chr6_1:120294-120313 | None:intergenic | 30.0% |
| ! | AAATGTCAAAGCTGTAGTTT+TGG | - | chr6_1:120293-120312 | Msa0867380:intron | 30.0% |
| GTAAACAAAAAACCAACCTA+TGG | + | chr6_1:120457-120476 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTGGTGGTAAATCG+AGG | + | chr6_1:115603-115622 | None:intergenic | 35.0% |
| ! | TAAACCCTAACCAAGAGTTT+TGG | + | chr6_1:115719-115738 | None:intergenic | 35.0% |
| GTTTATACTCTCAAACCCTA+GGG | - | chr6_1:115734-115753 | Msa0867380:intron | 35.0% | |
| TATGGGAGATAGTGAAACAA+TGG | - | chr6_1:116259-116278 | Msa0867380:intron | 35.0% | |
| GTAAATGCATAGCCTGAATT+GGG | + | chr6_1:116416-116435 | None:intergenic | 35.0% | |
| AGTAAATGCATAGCCTGAAT+TGG | + | chr6_1:116417-116436 | None:intergenic | 35.0% | |
| GGCTATGCATTTACTTATTC+TGG | - | chr6_1:116422-116441 | Msa0867380:intron | 35.0% | |
| GCATTTACTTATTCTGGTGA+TGG | - | chr6_1:116428-116447 | Msa0867380:intron | 35.0% | |
| TGAGCTTGTAGTACAGAATT+AGG | + | chr6_1:116476-116495 | None:intergenic | 35.0% | |
| CACTTCCATTTACAGATGAA+TGG | + | chr6_1:116601-116620 | None:intergenic | 35.0% | |
| !! | AATGGAAGTGTTGATACAGT+TGG | - | chr6_1:116611-116630 | Msa0867380:CDS | 35.0% |
| GATACAGTTGGACTTGAAAA+TGG | - | chr6_1:116623-116642 | Msa0867380:CDS | 35.0% | |
| AATGCATCAGAGAATGTTGA+TGG | - | chr6_1:116647-116666 | Msa0867380:CDS | 35.0% | |
| ATGCATCAGAGAATGTTGAT+GGG | - | chr6_1:116648-116667 | Msa0867380:CDS | 35.0% | |
| AAACAACTCACAGATGCTTA+CGG | - | chr6_1:116683-116702 | Msa0867380:CDS | 35.0% | |
| GTTATGTTAGCATACTCTTC+GGG | - | chr6_1:116728-116747 | Msa0867380:CDS | 35.0% | |
| ! | ATTAACCAATGATGGAGTCA+AGG | - | chr6_1:116850-116869 | Msa0867380:CDS | 35.0% |
| ACAAGCTTACATGAACTACA+AGG | + | chr6_1:116925-116944 | None:intergenic | 35.0% | |
| GTGTTGTCAATTGTGGATAA+CGG | - | chr6_1:117042-117061 | Msa0867380:intron | 35.0% | |
| !! | GATAACGGATAAAACAGTAG+CGG | - | chr6_1:117057-117076 | Msa0867380:intron | 35.0% |
| !!! | ATTTTTTCATGCATTGGAGG+TGG | - | chr6_1:117149-117168 | Msa0867380:CDS | 35.0% |
| ! | GCACTGGTAAACCAATAAAA+TGG | + | chr6_1:117318-117337 | None:intergenic | 35.0% |
| GCAACAAGATATCATGACTT+TGG | - | chr6_1:117336-117355 | Msa0867380:intron | 35.0% | |
| GAGATAAGACGTGTATGTTT+AGG | + | chr6_1:117444-117463 | None:intergenic | 35.0% | |
| TAAACCTGCATCTGTTTAAC+GGG | - | chr6_1:117842-117861 | Msa0867380:CDS | 35.0% | |
| CTCGTAATAAGGGACAAAAA+AGG | + | chr6_1:117976-117995 | None:intergenic | 35.0% | |
| CAGAATTCCCTTTGTGTTAT+GGG | - | chr6_1:118145-118164 | Msa0867380:intron | 35.0% | |
| TCCAATACCCATAACACAAA+GGG | + | chr6_1:118155-118174 | None:intergenic | 35.0% | |
| TTCCAATACCCATAACACAA+AGG | + | chr6_1:118156-118175 | None:intergenic | 35.0% | |
| TTTATGAACGAGCTGTTCAA+GGG | - | chr6_1:118229-118248 | Msa0867380:intron | 35.0% | |
| TTACATATTCAGTGGACATG+TGG | - | chr6_1:118253-118272 | Msa0867380:intron | 35.0% | |
| ATATTCGCTATAAGCACCTA+TGG | - | chr6_1:118288-118307 | Msa0867380:intron | 35.0% | |
| ! | ACAGTACCATCTCCTTTTTA+TGG | - | chr6_1:118444-118463 | Msa0867380:intron | 35.0% |
| ! | AAAGCTTTTCCGCCATAAAA+AGG | + | chr6_1:118459-118478 | None:intergenic | 35.0% |
| ! | ACATAGTGGAATCAAAACCA+AGG | + | chr6_1:118526-118545 | None:intergenic | 35.0% |
| AAACTTCATAGTTGTGTGGA+AGG | - | chr6_1:118601-118620 | Msa0867380:intron | 35.0% | |
| AACTTCATAGTTGTGTGGAA+GGG | - | chr6_1:118602-118621 | Msa0867380:intron | 35.0% | |
| TAACCATTTCAACAGGAAAG+GGG | + | chr6_1:118640-118659 | None:intergenic | 35.0% | |
| CTAACCATTTCAACAGGAAA+GGG | + | chr6_1:118641-118660 | None:intergenic | 35.0% | |
| AAACAGCTAACCATTTCAAC+AGG | + | chr6_1:118647-118666 | None:intergenic | 35.0% | |
| ATCAATTTGCAAATTGCTGC+TGG | - | chr6_1:118690-118709 | Msa0867380:intron | 35.0% | |
| TCAATTTGCAAATTGCTGCT+GGG | - | chr6_1:118691-118710 | Msa0867380:intron | 35.0% | |
| ATCATACAATGTCCGAGAAA+TGG | + | chr6_1:118760-118779 | None:intergenic | 35.0% | |
| ! | TATTTCAGGCTTTTTGAACG+AGG | - | chr6_1:118936-118955 | Msa0867380:intron | 35.0% |
| TTCTGGTGTAAATCATTGCA+AGG | + | chr6_1:119049-119068 | None:intergenic | 35.0% | |
| AGAGAATCCAAATCAGCAAT+TGG | - | chr6_1:119073-119092 | Msa0867380:intron | 35.0% | |
| ! | TATCGATCCAATTGCTGATT+TGG | + | chr6_1:119083-119102 | None:intergenic | 35.0% |
| ATAGAGAGGAGATAGTAGAA+GGG | + | chr6_1:119214-119233 | None:intergenic | 35.0% | |
| AATAGAGAGGAGATAGTAGA+AGG | + | chr6_1:119215-119234 | None:intergenic | 35.0% | |
| ! | GTTGAAGTAATTTAGTTCGG+GGG | + | chr6_1:119240-119259 | None:intergenic | 35.0% |
| ! | CGTTGAAGTAATTTAGTTCG+GGG | + | chr6_1:119241-119260 | None:intergenic | 35.0% |
| ! | GCGTTGAAGTAATTTAGTTC+GGG | + | chr6_1:119242-119261 | None:intergenic | 35.0% |
| ATCGACCTCTTTCAGAATTA+CGG | - | chr6_1:119299-119318 | Msa0867380:intron | 35.0% | |
| ATTAACAGAAGCAGAAGAGT+TGG | - | chr6_1:119438-119457 | Msa0867380:intron | 35.0% | |
| !! | GAGTTCGATTCTAAGATCAT+TGG | - | chr6_1:119505-119524 | Msa0867380:CDS | 35.0% |
| !!! | GTTTTGAAACAACTATCAGG+AGG | - | chr6_1:119527-119546 | Msa0867380:CDS | 35.0% |
| ACGTACGACCTCTTAATATT+GGG | - | chr6_1:119560-119579 | Msa0867380:CDS | 35.0% | |
| GCACTTATAAGAAAGCAGTT+TGG | + | chr6_1:119650-119669 | None:intergenic | 35.0% | |
| GTTTCTTCATCCAACAGAAT+AGG | + | chr6_1:119755-119774 | None:intergenic | 35.0% | |
| ATTGAACTGAGACTAAAGCA+TGG | - | chr6_1:119788-119807 | Msa0867380:CDS | 35.0% | |
| TTGAACTGAGACTAAAGCAT+GGG | - | chr6_1:119789-119808 | Msa0867380:CDS | 35.0% | |
| ! | TTCAAACCCTAATTTGTCAG+TGG | - | chr6_1:119842-119861 | Msa0867380:CDS | 35.0% |
| GAATGTCCACTGACAAATTA+GGG | + | chr6_1:119851-119870 | None:intergenic | 35.0% | |
| AGAATGTCCACTGACAAATT+AGG | + | chr6_1:119852-119871 | None:intergenic | 35.0% | |
| AATTTGTCAGTGGACATTCT+AGG | - | chr6_1:119852-119871 | Msa0867380:CDS | 35.0% | |
| AGTGTGAATGTTATGAATGC+AGG | - | chr6_1:119908-119927 | Msa0867380:intron | 35.0% | |
| ! | GATACGCTATGTTTTGTGTA+TGG | - | chr6_1:120193-120212 | Msa0867380:intron | 35.0% |
| ! | ATGTTTTGTGTATGGAAGCT+AGG | - | chr6_1:120201-120220 | Msa0867380:intron | 35.0% |
| ! | TGTTTTGTGTATGGAAGCTA+GGG | - | chr6_1:120202-120221 | Msa0867380:intron | 35.0% |
| TTGCAAATAATGTTCTCGCT+CGG | - | chr6_1:120237-120256 | Msa0867380:intron | 35.0% | |
| CAACACTAAAAAGCAGCAAA+TGG | + | chr6_1:120322-120341 | None:intergenic | 35.0% | |
| !! | TATAATGGACTACTAGCCAT+AGG | - | chr6_1:120393-120412 | Msa0867380:intron | 35.0% |
| ATAGTGTGTCAATACACCAT+AGG | - | chr6_1:120438-120457 | Msa0867380:intron | 35.0% | |
| TACCTGATTGTAAATGGTGA+AGG | - | chr6_1:120474-120493 | Msa0867380:five_prime_UTR | 35.0% | |
| ACCTGATTGTAAATGGTGAA+GGG | - | chr6_1:120475-120494 | Msa0867380:five_prime_UTR | 35.0% | |
| !! | TTGTCTTTTATTTCCCCATC+AGG | - | chr6_1:120558-120577 | Msa0867380:five_prime_UTR | 35.0% |
| !! | TGTCTTTTATTTCCCCATCA+GGG | - | chr6_1:120559-120578 | Msa0867380:five_prime_UTR | 35.0% |
| GGATGGAAATTTGCGAAGTA+GGG | + | chr6_1:115582-115601 | None:intergenic | 40.0% | |
| AGGATGGAAATTTGCGAAGT+AGG | + | chr6_1:115583-115602 | None:intergenic | 40.0% | |
| !! | TTTTGGTGGTAAATCGAGGA+TGG | + | chr6_1:115599-115618 | None:intergenic | 40.0% |
| ! | GTAGCTTCCGATGATGTTTT+TGG | + | chr6_1:115616-115635 | None:intergenic | 40.0% |
| TCGATTGCTTCCAAAACTCT+TGG | - | chr6_1:115706-115725 | Msa0867380:intron | 40.0% | |
| TGCTTCCAAAACTCTTGGTT+AGG | - | chr6_1:115711-115730 | Msa0867380:intron | 40.0% | |
| GCTTCCAAAACTCTTGGTTA+GGG | - | chr6_1:115712-115731 | Msa0867380:intron | 40.0% | |
| GGTTTATACTCTCAAACCCT+AGG | - | chr6_1:115733-115752 | Msa0867380:intron | 40.0% | |
| ATGGGAATGCTTATACTGCT+GGG | - | chr6_1:116447-116466 | Msa0867380:intron | 40.0% | |
| GCTGACCATTCATCTGTAAA+TGG | - | chr6_1:116593-116612 | Msa0867380:CDS | 40.0% | |
| ! | ATCAGAGAATGTTGATGGGT+CGG | - | chr6_1:116652-116671 | Msa0867380:CDS | 40.0% |
| GCTAACATAACAGACAGAGA+AGG | + | chr6_1:116719-116738 | None:intergenic | 40.0% | |
| TAAGTCCTTGACTCCATCAT+TGG | + | chr6_1:116858-116877 | None:intergenic | 40.0% | |
| GGCCTAAATGAACTATTTGC+TGG | + | chr6_1:116904-116923 | None:intergenic | 40.0% | |
| AATATTCCGCTACGCTATAG+CGG | - | chr6_1:117086-117105 | Msa0867380:CDS | 40.0% | |
| !!! | CTTTGAAATTTTTCCAGGCC+TGG | - | chr6_1:117210-117229 | Msa0867380:intron | 40.0% |
| GTCAAGATCCAATTCAAACC+AGG | + | chr6_1:117231-117250 | None:intergenic | 40.0% | |
| GTCATGATATCTTGTTGCAC+TGG | + | chr6_1:117334-117353 | None:intergenic | 40.0% | |
| ! | TAAGCCACTTCTGCGATTTT+TGG | - | chr6_1:117384-117403 | Msa0867380:intron | 40.0% |
| ACATCCAAAAATCGCAGAAG+TGG | + | chr6_1:117391-117410 | None:intergenic | 40.0% | |
| ! | TTTACTGAGTTGGCTGATTC+AGG | - | chr6_1:117418-117437 | Msa0867380:intron | 40.0% |
| TTTGATTGACGAGACAGAGA+AGG | - | chr6_1:117646-117665 | Msa0867380:intron | 40.0% | |
| AAGACGTGAATTACATGTCG+AGG | - | chr6_1:117701-117720 | Msa0867380:CDS | 40.0% | |
| AAACCTGCATCTGTTTAACG+GGG | - | chr6_1:117843-117862 | Msa0867380:CDS | 40.0% | |
| !! | ATTTCTCTGGTTCTGTCTGT+CGG | - | chr6_1:117914-117933 | Msa0867380:CDS | 40.0% |
| AACACAAAGGGAATTCTGCT+AGG | + | chr6_1:118143-118162 | None:intergenic | 40.0% | |
| GCAGAATTCCCTTTGTGTTA+TGG | - | chr6_1:118144-118163 | Msa0867380:intron | 40.0% | |
| TCCCTTTGTGTTATGGGTAT+TGG | - | chr6_1:118151-118170 | Msa0867380:intron | 40.0% | |
| GAAGAAATATGCTGACCATG+AGG | - | chr6_1:118173-118192 | Msa0867380:intron | 40.0% | |
| GTTTATGAACGAGCTGTTCA+AGG | - | chr6_1:118228-118247 | Msa0867380:intron | 40.0% | |
| TTATGAACGAGCTGTTCAAG+GGG | - | chr6_1:118230-118249 | Msa0867380:intron | 40.0% | |
| TCAAGGGGTTACATATTCAG+TGG | - | chr6_1:118245-118264 | Msa0867380:intron | 40.0% | |
| TATTACCTACGAACTGTGTC+TGG | + | chr6_1:118318-118337 | None:intergenic | 40.0% | |
| ACACAGTTCGTAGGTAATAG+AGG | - | chr6_1:118319-118338 | Msa0867380:intron | 40.0% | |
| ! | GTACCATCTCCTTTTTATGG+CGG | - | chr6_1:118447-118466 | Msa0867380:intron | 40.0% |
| TTTCCGCCATAAAAAGGAGA+TGG | + | chr6_1:118453-118472 | None:intergenic | 40.0% | |
| ! | TTATGGCGGAAAAGCTTTGA+TGG | - | chr6_1:118461-118480 | Msa0867380:intron | 40.0% |
| ! | TATGGCGGAAAAGCTTTGAT+GGG | - | chr6_1:118462-118481 | Msa0867380:intron | 40.0% |
| AACCATTTCAACAGGAAAGG+GGG | + | chr6_1:118639-118658 | None:intergenic | 40.0% | |
| GCTAACCATTTCAACAGGAA+AGG | + | chr6_1:118642-118661 | None:intergenic | 40.0% | |
| TCTATGACTGCTCCATTTCT+CGG | - | chr6_1:118745-118764 | Msa0867380:intron | 40.0% | |
| ACTGATGCACATCCATGTAT+GGG | + | chr6_1:118874-118893 | None:intergenic | 40.0% | |
| TACTGATGCACATCCATGTA+TGG | + | chr6_1:118875-118894 | None:intergenic | 40.0% | |
| CATGGATGTGCATCAGTAAA+TGG | - | chr6_1:118877-118896 | Msa0867380:intron | 40.0% | |
| CAAGACTGCTTGCTTATTTC+AGG | - | chr6_1:118922-118941 | Msa0867380:intron | 40.0% | |
| !! | GAACGAGGATTAGCTTATGT+TGG | - | chr6_1:118951-118970 | Msa0867380:intron | 40.0% |
| TGGTGTAAATCATTGCAAGG+CGG | + | chr6_1:119046-119065 | None:intergenic | 40.0% | |
| TAGAGAGGAGATAGTAGAAG+GGG | + | chr6_1:119213-119232 | None:intergenic | 40.0% | |
| !! | TAAATGGTGTTGCAGCTTCA+AGG | - | chr6_1:119264-119283 | Msa0867380:intron | 40.0% |
| AATACAGCACTTGCAGGTTT+AGG | + | chr6_1:119421-119440 | None:intergenic | 40.0% | |
| TCTGTTAATACAGCACTTGC+AGG | + | chr6_1:119427-119446 | None:intergenic | 40.0% | |
| CACGTACGACCTCTTAATAT+TGG | - | chr6_1:119559-119578 | Msa0867380:CDS | 40.0% | |
| CGTACGACCTCTTAATATTG+GGG | - | chr6_1:119561-119580 | Msa0867380:CDS | 40.0% | |
| TCAAGCTCCCCAATATTAAG+AGG | + | chr6_1:119571-119590 | None:intergenic | 40.0% | |
| ATATTGGGGAGCTTGAAAAC+TGG | - | chr6_1:119575-119594 | Msa0867380:CDS | 40.0% | |
| AAGTGCACATCCTATTCTGT+TGG | - | chr6_1:119742-119761 | Msa0867380:CDS | 40.0% | |
| TAAAGCATGGGCCTACAAAT+TGG | - | chr6_1:119801-119820 | Msa0867380:CDS | 40.0% | |
| ! | GCCTACAAATTGGTTTCTTG+AGG | - | chr6_1:119811-119830 | Msa0867380:CDS | 40.0% |
| GCCTCAAGAAACCAATTTGT+AGG | + | chr6_1:119815-119834 | None:intergenic | 40.0% | |
| TCTTCATAATCACCTGTCTC+AGG | - | chr6_1:119941-119960 | Msa0867380:intron | 40.0% | |
| ! | GTCCCTCTTTTCATATACGA+GGG | - | chr6_1:119972-119991 | Msa0867380:intron | 40.0% |
| ! | TCCCTCTTTTCATATACGAG+GGG | - | chr6_1:119973-119992 | Msa0867380:intron | 40.0% |
| TATCCAGTACTCGGGATAAT+TGG | + | chr6_1:120177-120196 | None:intergenic | 40.0% | |
| AACATAGCGTATCCAGTACT+CGG | + | chr6_1:120186-120205 | None:intergenic | 40.0% | |
| TATGGAAGCTAGGGAAAGTA+TGG | - | chr6_1:120211-120230 | Msa0867380:intron | 40.0% | |
| TGCAAATAATGTTCTCGCTC+GGG | - | chr6_1:120238-120257 | Msa0867380:intron | 40.0% | |
| TGTGTCAATACACCATAGGT+TGG | - | chr6_1:120442-120461 | Msa0867380:intron | 40.0% | |
| CCTGATTGTAAATGGTGAAG+GGG | - | chr6_1:120476-120495 | Msa0867380:five_prime_UTR | 40.0% | |
| TTCTATTCTCGGCTAAACGA+AGG | + | chr6_1:120585-120604 | None:intergenic | 40.0% | |
| AAAGTAGAACCTCACACGCT+CGG | - | chr6_1:115554-115573 | Msa0867380:CDS | 45.0% | |
| !!! | GCTTCCGATGATGTTTTTGG+TGG | + | chr6_1:115613-115632 | None:intergenic | 45.0% |
| AGAGAGAGAGAGAGAGAGAA+CGG | + | chr6_1:115675-115694 | None:intergenic | 45.0% | |
| CTCTCTCTCTCTCTCTCATA+AGG | - | chr6_1:115679-115698 | Msa0867380:intron | 45.0% | |
| TTGTTATCTCAGGGCCTGTT+TGG | - | chr6_1:115886-115905 | Msa0867380:intron | 45.0% | |
| ! | GTGTTGTTGTAAGCATCCGA+TGG | + | chr6_1:116314-116333 | None:intergenic | 45.0% |
| GGAACATTAGCACCAACCTT+GGG | + | chr6_1:116353-116372 | None:intergenic | 45.0% | |
| AGGAACATTAGCACCAACCT+TGG | + | chr6_1:116354-116373 | None:intergenic | 45.0% | |
| GATGGGAATGCTTATACTGC+TGG | - | chr6_1:116446-116465 | Msa0867380:intron | 45.0% | |
| TGGGAATGCTTATACTGCTG+GGG | - | chr6_1:116448-116467 | Msa0867380:intron | 45.0% | |
| ACCAGACTGGAATCCTCATT+AGG | + | chr6_1:116539-116558 | None:intergenic | 45.0% | |
| AATGAGGATTCCAGTCTGGT+TGG | - | chr6_1:116539-116558 | Msa0867380:CDS | 45.0% | |
| ACTATACCGCTATAGCGTAG+CGG | + | chr6_1:117095-117114 | None:intergenic | 45.0% | |
| ! | TTTCCAGGCCTGGTTTGAAT+TGG | - | chr6_1:117220-117239 | Msa0867380:intron | 45.0% |
| CTGCTGAAGAAGATCGATTG+TGG | - | chr6_1:117579-117598 | Msa0867380:intron | 45.0% | |
| AACCTGCATCTGTTTAACGG+GGG | - | chr6_1:117844-117863 | Msa0867380:CDS | 45.0% | |
| AGTTATGTGGGCGATTTCTC+TGG | - | chr6_1:117901-117920 | Msa0867380:CDS | 45.0% | |
| CAACTTTATCAGCAGAGCCA+AGG | + | chr6_1:118203-118222 | None:intergenic | 45.0% | |
| AACTGTGTCTGGATCTCCAT+AGG | + | chr6_1:118307-118326 | None:intergenic | 45.0% | |
| AAGGAGATGGTACTGTTGCA+CGG | + | chr6_1:118440-118459 | None:intergenic | 45.0% | |
| ACCATTTCAACAGGAAAGGG+GGG | + | chr6_1:118638-118657 | None:intergenic | 45.0% | |
| GGAAGATCTCGTCTGGTTAA+GGG | - | chr6_1:118712-118731 | Msa0867380:intron | 45.0% | |
| GAGAAATGGAGCAGTCATAG+AGG | + | chr6_1:118746-118765 | None:intergenic | 45.0% | |
| AGGAAGGTAAATGCAGCGTT+TGG | - | chr6_1:118787-118806 | Msa0867380:intron | 45.0% | |
| ACAGCAGCACTAGTGTTCTA+AGG | + | chr6_1:118849-118868 | None:intergenic | 45.0% | |
| ATGAGTACATGCAGCAAGAC+TGG | - | chr6_1:119018-119037 | Msa0867380:intron | 45.0% | |
| TGAGTACATGCAGCAAGACT+GGG | - | chr6_1:119019-119038 | Msa0867380:intron | 45.0% | |
| GGTGTAAATCATTGCAAGGC+GGG | + | chr6_1:119045-119064 | None:intergenic | 45.0% | |
| TAGTTCGGGGGAAAATAGAG+AGG | + | chr6_1:119228-119247 | None:intergenic | 45.0% | |
| ! | GCTGTCCGTAATTCTGAAAG+AGG | + | chr6_1:119307-119326 | None:intergenic | 45.0% |
| GGAGAATTATCTGCACCATC+AGG | + | chr6_1:119400-119419 | None:intergenic | 45.0% | |
| AGAGGTCGTACGTGAAAGTA+GGG | + | chr6_1:119553-119572 | None:intergenic | 45.0% | |
| AAGAGGTCGTACGTGAAAGT+AGG | + | chr6_1:119554-119573 | None:intergenic | 45.0% | |
| ATAATCACCTGTCTCAGGCA+AGG | - | chr6_1:119946-119965 | Msa0867380:intron | 45.0% | |
| ! | GGTCCCTCTTTTCATATACG+AGG | - | chr6_1:119971-119990 | Msa0867380:intron | 45.0% |
| GCCCCTCGTATATGAAAAGA+GGG | + | chr6_1:119977-119996 | None:intergenic | 45.0% | |
| ACATAGCGTATCCAGTACTC+GGG | + | chr6_1:120185-120204 | None:intergenic | 45.0% | |
| CCCCTTCACCATTTACAATC+AGG | + | chr6_1:120479-120498 | None:intergenic | 45.0% | |
| AAAATGGGTCATTGGCAACG+CGG | + | chr6_1:120620-120639 | None:intergenic | 45.0% | |
| TGCTGCTGAGACGTATCCAT+CGG | - | chr6_1:116295-116314 | Msa0867380:intron | 50.0% | |
| CTTGGGAACAGGATTCGAAG+CGG | + | chr6_1:116336-116355 | None:intergenic | 50.0% | |
| TCGAATCCTGTTCCCAAGGT+TGG | - | chr6_1:116338-116357 | Msa0867380:intron | 50.0% | |
| TTAGCACCAACCTTGGGAAC+AGG | + | chr6_1:116347-116366 | None:intergenic | 50.0% | |
| AACGAGTCAAAGCAAGCTGC+TGG | - | chr6_1:116509-116528 | Msa0867380:intron | 50.0% | |
| GCCTAATGAGGATTCCAGTC+TGG | - | chr6_1:116535-116554 | Msa0867380:CDS | 50.0% | |
| GGATTCCAGTCTGGTTGGAA+AGG | - | chr6_1:116544-116563 | Msa0867380:CDS | 50.0% | |
| AGCTTCCTTTCCAACCAGAC+TGG | + | chr6_1:116552-116571 | None:intergenic | 50.0% | |
| TCTGGTTGGAAAGGAAGCTC+TGG | - | chr6_1:116553-116572 | Msa0867380:CDS | 50.0% | |
| GCTACGCTATAGCGGTATAG+TGG | - | chr6_1:117094-117113 | Msa0867380:CDS | 50.0% | |
| TGCATTGGAGGTGGCGTTTA+AGG | - | chr6_1:117158-117177 | Msa0867380:CDS | 50.0% | |
| GATCCAATTCAAACCAGGCC+TGG | + | chr6_1:117226-117245 | None:intergenic | 50.0% | |
| GATTGACGAGACAGAGAAGG+TGG | - | chr6_1:117649-117668 | Msa0867380:intron | 50.0% | |
| GAGATCCAGACACAGTTCGT+AGG | - | chr6_1:118310-118329 | Msa0867380:intron | 50.0% | |
| !! | GTTGCACGGTCTCTGAAATC+AGG | + | chr6_1:118426-118445 | None:intergenic | 50.0% |
| CCATTTCAACAGGAAAGGGG+GGG | + | chr6_1:118637-118656 | None:intergenic | 50.0% | |
| GGGAAGATCTCGTCTGGTTA+AGG | - | chr6_1:118711-118730 | Msa0867380:intron | 50.0% | |
| TCGTCTGGTTAAGGGCTAGA+TGG | - | chr6_1:118720-118739 | Msa0867380:intron | 50.0% | |
| !! | GTGCTGCTGTTTCCCATACA+TGG | - | chr6_1:118859-118878 | Msa0867380:intron | 50.0% |
| GTGTTGCAGCTTCAAGGAGT+TGG | - | chr6_1:119270-119289 | Msa0867380:intron | 50.0% | |
| !! | AGTGGCAGGTGTTGTTTCAG+AGG | - | chr6_1:119342-119361 | Msa0867380:intron | 50.0% |
| !! | GTGGCAGGTGTTGTTTCAGA+GGG | - | chr6_1:119343-119362 | Msa0867380:intron | 50.0% |
| !! | GTTTCAGAGGGTACTGACCA+AGG | - | chr6_1:119355-119374 | Msa0867380:intron | 50.0% |
| !! | GGTACTGACCAAGGTGTTGA+AGG | - | chr6_1:119364-119383 | Msa0867380:intron | 50.0% |
| !! | TGACCAAGGTGTTGAAGGAG+AGG | - | chr6_1:119369-119388 | Msa0867380:intron | 50.0% |
| GAACCTCTCCTTCAACACCT+TGG | + | chr6_1:119375-119394 | None:intergenic | 50.0% | |
| GAAGGAGAGGTTCATCCTGA+TGG | - | chr6_1:119382-119401 | Msa0867380:intron | 50.0% | |
| AAGAGAAGGCGACTTGAGCA+AGG | - | chr6_1:119621-119640 | Msa0867380:CDS | 50.0% | |
| GGCCCCTCGTATATGAAAAG+AGG | + | chr6_1:119978-119997 | None:intergenic | 50.0% | |
| GTACTCGGGATAATTGGCAC+AGG | + | chr6_1:120171-120190 | None:intergenic | 50.0% | |
| GTGCCAATTATCCCGAGTAC+TGG | - | chr6_1:120171-120190 | Msa0867380:intron | 50.0% | |
| ! | GGCGAGCCAAGTTTTTGTCA+AGG | - | chr6_1:120259-120278 | Msa0867380:intron | 50.0% |
| CGCTTCGAATCCTGTTCCCA+AGG | - | chr6_1:116334-116353 | Msa0867380:intron | 55.0% | |
| ! | AGCTGCTGGAGTGCCTAATG+AGG | - | chr6_1:116523-116542 | Msa0867380:intron | 55.0% |
| !! | GGAAGCTCTGGACTCTGCTA+TGG | - | chr6_1:116565-116584 | Msa0867380:CDS | 55.0% |
| CACCCCCGTTAAACAGATGC+AGG | + | chr6_1:117849-117868 | None:intergenic | 55.0% | |
| CCCCCCCTTTCCTGTTGAAA+TGG | - | chr6_1:118634-118653 | Msa0867380:intron | 55.0% | |
| AGCTGATGAAGCTGCTGCAG+TGG | - | chr6_1:119324-119343 | Msa0867380:intron | 55.0% | |
| ATCACCTGTCTCAGGCAAGG+AGG | - | chr6_1:119949-119968 | Msa0867380:intron | 55.0% | |
| TCACCTGTCTCAGGCAAGGA+GGG | - | chr6_1:119950-119969 | Msa0867380:intron | 55.0% | |
| GCTAAACGAAGGCCCTGATG+GGG | + | chr6_1:120574-120593 | None:intergenic | 55.0% | |
| GGCTAAACGAAGGCCCTGAT+GGG | + | chr6_1:120575-120594 | None:intergenic | 55.0% | |
| TAATGTTCCTGCCCCAGCCG+AGG | - | chr6_1:116364-116383 | Msa0867380:intron | 60.0% | |
| AGCAGCTTCTCCTGCAGCCT+CGG | + | chr6_1:116384-116403 | None:intergenic | 60.0% | |
| GCTGCTGCTCTGCCCAATTC+AGG | - | chr6_1:116401-116420 | Msa0867380:intron | 60.0% | |
| CGAGACAGAGAAGGTGGCAG+AGG | - | chr6_1:117655-117674 | Msa0867380:intron | 60.0% | |
| GCTGCTGGGAAGATCTCGTC+TGG | - | chr6_1:118705-118724 | Msa0867380:intron | 60.0% | |
| GATGAAGCTGCTGCAGTGGC+AGG | - | chr6_1:119328-119347 | Msa0867380:intron | 60.0% | |
| CGGCTAAACGAAGGCCCTGA+TGG | + | chr6_1:120576-120595 | None:intergenic | 60.0% | |
| !! | AGTAGGGCACCGAGCGTGTG+AGG | + | chr6_1:115566-115585 | None:intergenic | 65.0% |
| TTCTCCTGCAGCCTCGGCTG+GGG | + | chr6_1:116378-116397 | None:intergenic | 65.0% | |
| CTTCTCCTGCAGCCTCGGCT+GGG | + | chr6_1:116379-116398 | None:intergenic | 65.0% | |
| GGACCCTCCTTGCCTGAGAC+AGG | + | chr6_1:119956-119975 | None:intergenic | 65.0% | |
| ! | TACTCCGTGGCGGGACAGAG+AGG | + | chr6_1:119999-120018 | None:intergenic | 65.0% |
| GCTTCTCCTGCAGCCTCGGC+TGG | + | chr6_1:116380-116399 | None:intergenic | 70.0% | |
| GCTGACCATGAGGCGCGCCT+TGG | - | chr6_1:118183-118202 | Msa0867380:intron | 70.0% | |
| CAGAGCCAAGGCGCGCCTCA+TGG | + | chr6_1:118191-118210 | None:intergenic | 70.0% | |
| GGGGCCTCTCTGTCCCGCCA+CGG | - | chr6_1:119992-120011 | Msa0867380:intron | 75.0% | |
| ! | CCTGCAGCCTCGGCTGGGGC+AGG | + | chr6_1:116374-116393 | None:intergenic | 80.0% |
| ! | CCTGCCCCAGCCGAGGCTGC+AGG | - | chr6_1:116371-116390 | Msa0867380:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 115525 | 120645 | 115525 | ID=Msa0867380;Name=Msa0867380 |
| chr6_1 | mRNA | 115525 | 120645 | 115525 | ID=Msa0867380-mRNA-1;Parent=Msa0867380;Name=Msa0867380-mRNA-1;_AED=0.22;_eAED=0.22;_QI=191|0.62|0.66|0.88|0.87|0.77|9|0|534 |
| chr6_1 | exon | 115525 | 115590 | 115525 | ID=Msa0867380-mRNA-1:exon:88;Parent=Msa0867380-mRNA-1 |
| chr6_1 | exon | 115890 | 116033 | 115890 | ID=Msa0867380-mRNA-1:exon:87;Parent=Msa0867380-mRNA-1 |
| chr6_1 | exon | 116528 | 116891 | 116528 | ID=Msa0867380-mRNA-1:exon:86;Parent=Msa0867380-mRNA-1 |
| chr6_1 | exon | 117059 | 117226 | 117059 | ID=Msa0867380-mRNA-1:exon:85;Parent=Msa0867380-mRNA-1 |
| chr6_1 | exon | 117656 | 117736 | 117656 | ID=Msa0867380-mRNA-1:exon:84;Parent=Msa0867380-mRNA-1 |
| chr6_1 | exon | 117839 | 118068 | 117839 | ID=Msa0867380-mRNA-1:exon:83;Parent=Msa0867380-mRNA-1 |
| chr6_1 | exon | 118494 | 118600 | 118494 | ID=Msa0867380-mRNA-1:exon:82;Parent=Msa0867380-mRNA-1 |
| chr6_1 | exon | 119466 | 119925 | 119466 | ID=Msa0867380-mRNA-1:exon:81;Parent=Msa0867380-mRNA-1 |
| chr6_1 | exon | 120470 | 120645 | 120470 | ID=Msa0867380-mRNA-1:exon:80;Parent=Msa0867380-mRNA-1 |
| chr6_1 | five_prime_UTR | 120470 | 120645 | 120470 | ID=Msa0867380-mRNA-1:five_prime_utr;Parent=Msa0867380-mRNA-1 |
| chr6_1 | five_prime_UTR | 119911 | 119925 | 119911 | ID=Msa0867380-mRNA-1:five_prime_utr;Parent=Msa0867380-mRNA-1 |
| chr6_1 | CDS | 119466 | 119910 | 119466 | ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1 |
| chr6_1 | CDS | 118494 | 118600 | 118494 | ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1 |
| chr6_1 | CDS | 117839 | 118068 | 117839 | ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1 |
| chr6_1 | CDS | 117656 | 117736 | 117656 | ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1 |
| chr6_1 | CDS | 117059 | 117226 | 117059 | ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1 |
| chr6_1 | CDS | 116528 | 116891 | 116528 | ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1 |
| chr6_1 | CDS | 115890 | 116033 | 115890 | ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1 |
| chr6_1 | CDS | 115525 | 115590 | 115525 | ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
