AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0867380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867380 MtrunA17_Chr7g0262021 96.169 261 10 0 1 261 1 261 0.0 510
Msa0867380 MtrunA17_Chr7g0262031 89.109 202 18 1 264 465 2 199 8.80e-127 369
Msa0867380 MtrunA17_Chr8g0380161 40.548 365 179 4 158 515 18 351 1.05e-84 285
Msa0867380 MtrunA17_Chr7g0262041 92.157 51 4 0 463 513 11 61 1.95e-24 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867380 AT1G04080.4 62.919 418 115 5 109 513 37 427 1.37e-178 522
Msa0867380 AT1G04080.1 62.919 418 115 5 109 513 37 427 1.37e-178 522
Msa0867380 AT1G04080.3 54.316 475 118 8 109 513 37 482 5.84e-160 476
Msa0867380 AT1G04080.2 67.220 241 69 2 283 513 1 241 3.77e-105 327
Msa0867380 AT5G46400.1 42.588 371 166 7 154 513 30 364 4.50e-87 290
Msa0867380 AT1G04080.5 66.346 208 60 2 316 513 1 208 3.09e-86 277
Msa0867380 AT5G46400.2 50.407 123 58 1 391 513 25 144 6.58e-33 134
Msa0867380 AT5G46400.3 50.407 123 58 1 391 513 25 144 6.58e-33 134

Find 129 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTATGCATTTACTTATTC+TGG 0.134991 6_1:-119726 Msa0867380:CDS
GCTTCTCCTGCAGCCTCGGC+TGG 0.142915 6_1:+119771 None:intergenic
ACGCCTTCACTTATACAAAA+TGG 0.200393 6_1:+115515 None:intergenic
TATCGATCCAATTGCTGATT+TGG 0.218895 6_1:+117068 None:intergenic
ATTTGGATTCTCTAATATTC+TGG 0.228707 6_1:+117085 None:intergenic
TGAGCTTGTAGTACAGAATT+AGG 0.232263 6_1:+119675 None:intergenic
CAGAATTCCCTTTGTGTTAT+GGG 0.232733 6_1:-118003 Msa0867380:CDS
ATTATCTTTCGTTTCCTCTT+TGG 0.236191 6_1:-117169 Msa0867380:CDS
ACGTACGACCTCTTAATATT+GGG 0.271534 6_1:-116588 Msa0867380:CDS
TGAAAACTGGCATAATTATC+TGG 0.271539 6_1:-116560 Msa0867380:CDS
CTTATACATCTCTTCTCTAA+TGG 0.271968 6_1:+116675 None:intergenic
GATACAGTTGGACTTGAAAA+TGG 0.279480 6_1:-119525 Msa0867380:CDS
CACGTACGACCTCTTAATAT+TGG 0.285155 6_1:-116589 Msa0867380:CDS
CTTCTCCTGCAGCCTCGGCT+GGG 0.286804 6_1:+119772 None:intergenic
TTATCTTTCGTTTCCTCTTT+GGG 0.287270 6_1:-117168 Msa0867380:CDS
GCTGCTGCTCTGCCCAATTC+AGG 0.288615 6_1:-119747 Msa0867380:CDS
GCAGAATTCCCTTTGTGTTA+TGG 0.289100 6_1:-118004 Msa0867380:CDS
GCTGACCATTCATCTGTAAA+TGG 0.289348 6_1:-119555 Msa0867380:CDS
AATACAGCACTTGCAGGTTT+AGG 0.295664 6_1:+116730 None:intergenic
AGTAAATGCATAGCCTGAAT+TGG 0.309418 6_1:+119734 None:intergenic
TCCCTTTGTGTTATGGGTAT+TGG 0.321785 6_1:-117997 Msa0867380:CDS
TATCCAGTACTCGGGATAAT+TGG 0.333216 6_1:+115974 None:intergenic
ATCGACCTCTTTCAGAATTA+CGG 0.355782 6_1:-116849 Msa0867380:CDS
TATGGAAGCTAGGGAAAGTA+TGG 0.382672 6_1:-115937 Msa0867380:CDS
TCTGTTAATACAGCACTTGC+AGG 0.384276 6_1:+116724 None:intergenic
ATGAGTACATGCAGCAAGAC+TGG 0.385484 6_1:-117130 Msa0867380:CDS
CCTGCAGCCTCGGCTGGGGC+AGG 0.390779 6_1:+119777 None:intergenic
ACTTATACAAAATGGGTCAT+TGG 0.393894 6_1:+115523 None:intergenic
AGCAGCTTCTCCTGCAGCCT+CGG 0.403142 6_1:+119767 None:intergenic
GATGAAGCTGCTGCAGTGGC+AGG 0.405134 6_1:-116820 Msa0867380:CDS
TTCTCCTGCAGCCTCGGCTG+GGG 0.420645 6_1:+119773 None:intergenic
CGCCTTCACTTATACAAAAT+GGG 0.420647 6_1:+115516 None:intergenic
GGAGAATTATCTGCACCATC+AGG 0.426487 6_1:+116751 None:intergenic
TATTACCTACGAACTGTGTC+TGG 0.428305 6_1:+117833 None:intergenic
TTAGCACCAACCTTGGGAAC+AGG 0.431376 6_1:+119804 None:intergenic
TAAATGGTGTTGCAGCTTCA+AGG 0.434451 6_1:-116884 Msa0867380:intron
CCTGCCCCAGCCGAGGCTGC+AGG 0.435556 6_1:-119777 Msa0867380:CDS
GCATTTACTTATTCTGGTGA+TGG 0.435692 6_1:-119720 Msa0867380:CDS
GATGGGAATGCTTATACTGC+TGG 0.441620 6_1:-119702 Msa0867380:CDS
AATTGGATCGATATTTCAAC+AGG 0.444059 6_1:-117058 Msa0867380:intron
TTATGGCGGAAAAGCTTTGA+TGG 0.444879 6_1:-117687 Msa0867380:CDS
AGAGAATCCAAATCAGCAAT+TGG 0.448924 6_1:-117075 Msa0867380:CDS
ATATTGGGGAGCTTGAAAAC+TGG 0.459736 6_1:-116573 Msa0867380:CDS
TCTGGTTGGAAAGGAAGCTC+TGG 0.463748 6_1:-119595 Msa0867380:CDS
GAGTTCGATTCTAAGATCAT+TGG 0.466817 6_1:-116643 Msa0867380:CDS
CATTTACTTATTCTGGTGAT+GGG 0.468008 6_1:-119719 Msa0867380:CDS
CACTTCCATTTACAGATGAA+TGG 0.468952 6_1:+119550 None:intergenic
AGGATGGAAATTTGCGAAGT+AGG 0.470451 6_1:+120568 None:intergenic
GTACATAAGATTTCTATTCT+CGG 0.471069 6_1:+115555 None:intergenic
TCGAATCCTGTTCCCAAGGT+TGG 0.472109 6_1:-119810 Msa0867380:CDS
AACGAGTCAAAGCAAGCTGC+TGG 0.475326 6_1:-119639 Msa0867380:CDS
TCAAGCTCCCCAATATTAAG+AGG 0.477060 6_1:+116580 None:intergenic
GTTTATGAACGAGCTGTTCA+AGG 0.479117 6_1:-117920 Msa0867380:CDS
GAACGAGGATTAGCTTATGT+TGG 0.479715 6_1:-117197 Msa0867380:CDS
GGATGGAAATTTGCGAAGTA+GGG 0.480324 6_1:+120569 None:intergenic
AGCTTCCTTTCCAACCAGAC+TGG 0.482155 6_1:+119599 None:intergenic
TGCAAATAATGTTCTCGCTC+GGG 0.483808 6_1:-115910 Msa0867380:CDS
GTAAATGCATAGCCTGAATT+GGG 0.486099 6_1:+119735 None:intergenic
GTGCCAATTATCCCGAGTAC+TGG 0.494096 6_1:-115977 Msa0867380:CDS
GCCTAATGAGGATTCCAGTC+TGG 0.497327 6_1:-119613 Msa0867380:CDS
ATTAACAGAAGCAGAAGAGT+TGG 0.497386 6_1:-116710 Msa0867380:CDS
TCCAATACCCATAACACAAA+GGG 0.499353 6_1:+117996 None:intergenic
AAGAGGTCGTACGTGAAAGT+AGG 0.516439 6_1:+116597 None:intergenic
TATGGCGGAAAAGCTTTGAT+GGG 0.517228 6_1:-117686 Msa0867380:CDS
GGTACTGACCAAGGTGTTGA+AGG 0.517289 6_1:-116784 Msa0867380:CDS
CAGAGCCAAGGCGCGCCTCA+TGG 0.522186 6_1:+117960 None:intergenic
CGAGACAGAGAAGGTGGCAG+AGG 0.524685 6_1:-118493 Msa0867380:intron
GGAACATTAGCACCAACCTT+GGG 0.526018 6_1:+119798 None:intergenic
CAAGGATTTAAACATCAGAA+TGG 0.529815 6_1:+117643 None:intergenic
TTGCAAATAATGTTCTCGCT+CGG 0.532036 6_1:-115911 Msa0867380:CDS
CGCTTCGAATCCTGTTCCCA+AGG 0.532298 6_1:-119814 Msa0867380:CDS
GTGTTGCAGCTTCAAGGAGT+TGG 0.532516 6_1:-116878 Msa0867380:intron
ATGGGAATGCTTATACTGCT+GGG 0.536210 6_1:-119701 Msa0867380:CDS
ACCAGACTGGAATCCTCATT+AGG 0.536266 6_1:+119612 None:intergenic
AGGAACATTAGCACCAACCT+TGG 0.537288 6_1:+119797 None:intergenic
AACATAGCGTATCCAGTACT+CGG 0.538429 6_1:+115965 None:intergenic
TCAATGTATTTATCCCAAAG+AGG 0.538798 6_1:+117155 None:intergenic
ATATTCGCTATAAGCACCTA+TGG 0.541316 6_1:-117860 Msa0867380:CDS
TAAATATATCGCTGATGATG+TGG 0.547668 6_1:+120616 None:intergenic
GCTGTCCGTAATTCTGAAAG+AGG 0.548224 6_1:+116844 None:intergenic
GTGGCAGGTGTTGTTTCAGA+GGG 0.550122 6_1:-116805 Msa0867380:CDS
AATGCATCAGAGAATGTTGA+TGG 0.550820 6_1:-119501 Msa0867380:CDS
AGTGGCAGGTGTTGTTTCAG+AGG 0.553746 6_1:-116806 Msa0867380:CDS
AAACAACTCACAGATGCTTA+CGG 0.557128 6_1:-119465 Msa0867380:intron
AGCTGATGAAGCTGCTGCAG+TGG 0.558284 6_1:-116824 Msa0867380:CDS
GGTGTAAATCATTGCAAGGC+GGG 0.558474 6_1:+117106 None:intergenic
AACTGTGTCTGGATCTCCAT+AGG 0.560352 6_1:+117844 None:intergenic
TTTATGAACGAGCTGTTCAA+GGG 0.561629 6_1:-117919 Msa0867380:CDS
AATGAGGATTCCAGTCTGGT+TGG 0.562814 6_1:-119609 Msa0867380:CDS
AGAGGTCGTACGTGAAAGTA+GGG 0.564513 6_1:+116598 None:intergenic
GGAAGCTCTGGACTCTGCTA+TGG 0.564721 6_1:-119583 Msa0867380:CDS
GGATTCCAGTCTGGTTGGAA+AGG 0.569228 6_1:-119604 Msa0867380:CDS
TTTGATTGACGAGACAGAGA+AGG 0.570064 6_1:-118502 Msa0867380:CDS
TAATGTTCCTGCCCCAGCCG+AGG 0.579939 6_1:-119784 Msa0867380:CDS
AAGAGAAGGCGACTTGAGCA+AGG 0.580408 6_1:-116527 Msa0867380:intron
TTCTGGTGTAAATCATTGCA+AGG 0.581222 6_1:+117102 None:intergenic
AGCTGCTGGAGTGCCTAATG+AGG 0.586064 6_1:-119625 Msa0867380:CDS
TGCTGCTGAGACGTATCCAT+CGG 0.586175 6_1:-119853 Msa0867380:CDS
TTCTATTCTCGGCTAAACGA+AGG 0.588400 6_1:+115566 None:intergenic
AATGGAAGTGTTGATACAGT+TGG 0.591174 6_1:-119537 Msa0867380:CDS
TGAGTACATGCAGCAAGACT+GGG 0.596076 6_1:-117129 Msa0867380:CDS
CAACTTTATCAGCAGAGCCA+AGG 0.596207 6_1:+117948 None:intergenic
CGTACGACCTCTTAATATTG+GGG 0.599762 6_1:-116587 Msa0867380:CDS
TTACATATTCAGTGGACATG+TGG 0.600677 6_1:-117895 Msa0867380:CDS
AAAGTAGAACCTCACACGCT+CGG 0.600943 6_1:-120594 Msa0867380:five_prime_UTR
TCAAGGGGTTACATATTCAG+TGG 0.607137 6_1:-117903 Msa0867380:CDS
TTCCAATACCCATAACACAA+AGG 0.612695 6_1:+117995 None:intergenic
AACACAAAGGGAATTCTGCT+AGG 0.613157 6_1:+118008 None:intergenic
TATGGGAGATAGTGAAACAA+TGG 0.615550 6_1:-119889 Msa0867380:CDS
TGACCAAGGTGTTGAAGGAG+AGG 0.619456 6_1:-116779 Msa0867380:CDS
GTGTTGTTGTAAGCATCCGA+TGG 0.622239 6_1:+119837 None:intergenic
ACATAGCGTATCCAGTACTC+GGG 0.622860 6_1:+115966 None:intergenic
ATCAGAGAATGTTGATGGGT+CGG 0.627186 6_1:-119496 Msa0867380:CDS
CTGCTGAAGAAGATCGATTG+TGG 0.627715 6_1:-118569 Msa0867380:CDS
GATTGACGAGACAGAGAAGG+TGG 0.630394 6_1:-118499 Msa0867380:CDS
GTACTCGGGATAATTGGCAC+AGG 0.638207 6_1:+115980 None:intergenic
GTTTCAGAGGGTACTGACCA+AGG 0.640522 6_1:-116793 Msa0867380:CDS
AAGGAGATGGTACTGTTGCA+CGG 0.643920 6_1:+117711 None:intergenic
GAAGGAGAGGTTCATCCTGA+TGG 0.646457 6_1:-116766 Msa0867380:CDS
GAACCTCTCCTTCAACACCT+TGG 0.647061 6_1:+116776 None:intergenic
ATGCATCAGAGAATGTTGAT+GGG 0.647426 6_1:-119500 Msa0867380:CDS
AAATATATCGCTGATGATGT+GGG 0.655302 6_1:+120617 None:intergenic
TTATGAACGAGCTGTTCAAG+GGG 0.665698 6_1:-117918 Msa0867380:CDS
GAGATCCAGACACAGTTCGT+AGG 0.679080 6_1:-117838 Msa0867380:intron
TGGGAATGCTTATACTGCTG+GGG 0.686552 6_1:-119700 Msa0867380:CDS
AAAATGGGTCATTGGCAACG+CGG 0.689260 6_1:+115531 None:intergenic
GAAGAAATATGCTGACCATG+AGG 0.691106 6_1:-117975 Msa0867380:CDS
TGGTGTAAATCATTGCAAGG+CGG 0.722048 6_1:+117105 None:intergenic
CTTGGGAACAGGATTCGAAG+CGG 0.730245 6_1:+119815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGTTAATAAAAAAAT+CGG - chr6_1:116785-116804 Msa0867380:CDS 10.0%
!!! ATTTTATGTTTTGTTTTTTG+TGG - chr6_1:116216-116235 Msa0867380:intron 15.0%
!! ATATAATAACTAGGTTTATT+AGG - chr6_1:117258-117277 Msa0867380:intron 15.0%
!!! ACATTTTTTTTCCATTTTAT+TGG - chr6_1:117304-117323 Msa0867380:intron 15.0%
!!! ATGTATAGTAATTGAAATTT+TGG - chr6_1:118542-118561 Msa0867380:CDS 15.0%
!!! TGTATAGTAATTGAAATTTT+GGG - chr6_1:118543-118562 Msa0867380:CDS 15.0%
!! ATCAAATTGAAAAGTTTATA+GGG + chr6_1:118578-118597 None:intergenic 15.0%
!! AATCAAATTGAAAAGTTTAT+AGG + chr6_1:118579-118598 None:intergenic 15.0%
!!! TAGTAATTGTGTTTATTTTT+TGG + chr6_1:119162-119181 None:intergenic 15.0%
!! TATGTTTATATGATTTCTTT+AGG - chr6_1:120519-120538 Msa0867380:five_prime_UTR 15.0%
!! ATGTTTATATGATTTCTTTA+GGG - chr6_1:120520-120539 Msa0867380:five_prime_UTR 15.0%
!! ACTTATTTGAACTTATTTAG+TGG - chr6_1:115922-115941 Msa0867380:CDS 20.0%
!!! GTTTTTTTTCATAAGCTATT+TGG + chr6_1:116069-116088 None:intergenic 20.0%
!! CTATTCTATAGCAAAAAAAT+TGG + chr6_1:116124-116143 None:intergenic 20.0%
!! CAAATTTCTACAATTACAAT+TGG + chr6_1:116190-116209 None:intergenic 20.0%
!! CAATTGTAATTGTAGAAATT+TGG - chr6_1:116188-116207 Msa0867380:intron 20.0%
!! GTAATATAATTAACCAATGA+TGG - chr6_1:116842-116861 Msa0867380:CDS 20.0%
!! TTATTTCCATTCATGAATAT+TGG + chr6_1:116993-117012 None:intergenic 20.0%
!! ACCATATTGATATAATAACT+AGG - chr6_1:117249-117268 Msa0867380:intron 20.0%
!! ACCTAGTTATTATATCAATA+TGG + chr6_1:117253-117272 None:intergenic 20.0%
!! AATATTAAAAACAAGACGTA+TGG + chr6_1:117466-117485 None:intergenic 20.0%
!! TAATTCACGTCTTAAAAATT+GGG + chr6_1:117694-117713 None:intergenic 20.0%
!!! TTGATTTATTTTATGACTCA+TGG - chr6_1:118051-118070 Msa0867380:intron 20.0%
!!! ACCTTATTATTTTCTATGAT+CGG - chr6_1:118356-118375 Msa0867380:intron 20.0%
!! ATTTCAATTACTATACATAG+TGG + chr6_1:118540-118559 None:intergenic 20.0%
!! TCAAATTGAAAAGTTTATAG+GGG + chr6_1:118577-118596 None:intergenic 20.0%
! AATTGAATATAGAATCCCTA+GGG + chr6_1:115752-115771 None:intergenic 25.0%
! ATTCATTCGATTAGATTTAC+TGG - chr6_1:115830-115849 Msa0867380:intron 25.0%
! TTATCTGATATTGTTATCTC+AGG - chr6_1:115876-115895 Msa0867380:intron 25.0%
! TATCTGATATTGTTATCTCA+GGG - chr6_1:115877-115896 Msa0867380:intron 25.0%
! TGAATTGAAATAATCCAAAC+AGG + chr6_1:115903-115922 None:intergenic 25.0%
! AAAACTTATTCCACTACATA+AGG + chr6_1:115966-115985 None:intergenic 25.0%
!!! TCAGATTTTTTGTTCAAGTA+TGG - chr6_1:116241-116260 Msa0867380:intron 25.0%
!!! CAGATTTTTTGTTCAAGTAT+GGG - chr6_1:116242-116261 Msa0867380:intron 25.0%
!! TTTTCACCAATATTCATGAA+TGG - chr6_1:116984-117003 Msa0867380:intron 25.0%
!!! AGCTTTATTTTTTCATGCAT+TGG - chr6_1:117143-117162 Msa0867380:CDS 25.0%
!!! TTTATTTTTTCATGCATTGG+AGG - chr6_1:117146-117165 Msa0867380:CDS 25.0%
! GTAATTCACGTCTTAAAAAT+TGG + chr6_1:117695-117714 None:intergenic 25.0%
! GGAAAAAATAATATACTAGC+AGG + chr6_1:117955-117974 None:intergenic 25.0%
! TCCGATCATAGAAAATAATA+AGG + chr6_1:118360-118379 None:intergenic 25.0%
!! TTTTTATCTTTGACACTATG+AGG - chr6_1:118664-118683 Msa0867380:intron 25.0%
! ATTTGGATTCTCTAATATTC+TGG + chr6_1:119066-119085 None:intergenic 25.0%
!!! TTTTTTGGAAACAAATGAAG+TGG + chr6_1:119147-119166 None:intergenic 25.0%
!! GGATGAAGAAACTTTTTAAT+CGG - chr6_1:119763-119782 Msa0867380:CDS 25.0%
!! GATGAAGAAACTTTTTAATC+GGG - chr6_1:119764-119783 Msa0867380:CDS 25.0%
!!! TTTTCTTGTTTTGTTGTTTG+TGG - chr6_1:120109-120128 Msa0867380:intron 25.0%
! AAATTACCTTGACAAAAACT+TGG + chr6_1:120268-120287 None:intergenic 25.0%
! AATTCACTTAGCTTAAAAAC+AGG + chr6_1:120356-120375 None:intergenic 25.0%
!!! TGTTTTTAAGCTAAGTGAAT+TGG - chr6_1:120355-120374 Msa0867380:intron 25.0%
! CAAGAAACACACATATATAA+TGG - chr6_1:120378-120397 Msa0867380:intron 25.0%
! TTTCATGAACTATTATCCTA+TGG + chr6_1:120412-120431 None:intergenic 25.0%
! TTTGTTTACCTGATTGTAAA+TGG - chr6_1:120468-120487 Msa0867380:intron 25.0%
! GTACATAAGATTTCTATTCT+CGG + chr6_1:120596-120615 None:intergenic 25.0%
! AAATATATCGCTGATGATGT+GGG + chr6_1:115534-115553 None:intergenic 30.0%
! TAAATATATCGCTGATGATG+TGG + chr6_1:115535-115554 None:intergenic 30.0%
TTTACCACCAAAAACATCAT+CGG - chr6_1:115606-115625 Msa0867380:intron 30.0%
CAATTGAATATAGAATCCCT+AGG + chr6_1:115753-115772 None:intergenic 30.0%
CATGATACGAAAACAGAATT+TGG + chr6_1:115809-115828 None:intergenic 30.0%
ACTTATTTGACCTTATGTAG+TGG - chr6_1:115953-115972 Msa0867380:CDS 30.0%
!!! GTAGTGGAATAAGTTTTGTT+AGG - chr6_1:115969-115988 Msa0867380:CDS 30.0%
CATTTACTTATTCTGGTGAT+GGG - chr6_1:116429-116448 Msa0867380:intron 30.0%
TGTTATGTTAGCATACTCTT+CGG - chr6_1:116727-116746 Msa0867380:CDS 30.0%
AAAATCGGAGTTCAATGTTA+AGG - chr6_1:116800-116819 Msa0867380:CDS 30.0%
AAATCGGAGTTCAATGTTAA+GGG - chr6_1:116801-116820 Msa0867380:CDS 30.0%
AACCAGCAAATAGTTCATTT+AGG - chr6_1:116899-116918 Msa0867380:intron 30.0%
AACAATAGTGTTGTCAATTG+TGG - chr6_1:117035-117054 Msa0867380:intron 30.0%
TCACTTGAGACAAAAACAAA+TGG + chr6_1:117190-117209 None:intergenic 30.0%
!!! AGTGACTTTGAAATTTTTCC+AGG - chr6_1:117205-117224 Msa0867380:CDS 30.0%
! TGTCTTCTATTTTACTGAGT+TGG - chr6_1:117408-117427 Msa0867380:intron 30.0%
! ATTGCTGTTCAACCAAATTA+TGG - chr6_1:117513-117532 Msa0867380:intron 30.0%
TTAGCAGCAAAACCATAATT+TGG + chr6_1:117528-117547 None:intergenic 30.0%
! ATTCTTCTGATTTTACTGCT+TGG - chr6_1:117618-117637 Msa0867380:intron 30.0%
ATACTACGTGTTTAATGAGA+TGG - chr6_1:117797-117816 Msa0867380:intron 30.0%
TTAAACCTGCATCTGTTTAA+CGG - chr6_1:117841-117860 Msa0867380:CDS 30.0%
TAATGTACACACAAGTTATG+TGG - chr6_1:117888-117907 Msa0867380:CDS 30.0%
AATGTACACACAAGTTATGT+GGG - chr6_1:117889-117908 Msa0867380:CDS 30.0%
CTACAAGTATCTCGTAATAA+GGG + chr6_1:117986-118005 None:intergenic 30.0%
ACTACAAGTATCTCGTAATA+AGG + chr6_1:117987-118006 None:intergenic 30.0%
TACGAGATACTTGTAGTTAT+AGG - chr6_1:117990-118009 Msa0867380:CDS 30.0%
ACTTGTAGTTATAGGTTTAG+TGG - chr6_1:117998-118017 Msa0867380:CDS 30.0%
! GATCGGATTTTCTATTTACT+AGG - chr6_1:118373-118392 Msa0867380:intron 30.0%
CAAGGATTTAAACATCAGAA+TGG + chr6_1:118508-118527 None:intergenic 30.0%
CATTCTGATGTTTAAATCCT+TGG - chr6_1:118506-118525 Msa0867380:CDS 30.0%
GAAAAGTTTATAGGGGAAAA+TGG + chr6_1:118570-118589 None:intergenic 30.0%
TTTCAAACTTCATAGTTGTG+TGG - chr6_1:118597-118616 Msa0867380:intron 30.0%
!!! GACATTGTATGATTTTTTGC+AGG - chr6_1:118767-118786 Msa0867380:intron 30.0%
!!! TTGTATGATTTTTTGCAGGA+AGG - chr6_1:118771-118790 Msa0867380:intron 30.0%
ATTATCTTTCGTTTCCTCTT+TGG - chr6_1:118979-118998 Msa0867380:intron 30.0%
TTATCTTTCGTTTCCTCTTT+GGG - chr6_1:118980-118999 Msa0867380:intron 30.0%
TCAATGTATTTATCCCAAAG+AGG + chr6_1:118996-119015 None:intergenic 30.0%
AATTGGATCGATATTTCAAC+AGG - chr6_1:119090-119109 Msa0867380:intron 30.0%
! AGCGTTGAAGTAATTTAGTT+CGG + chr6_1:119243-119262 None:intergenic 30.0%
AATTACTTCAACGCTGTAAA+TGG - chr6_1:119248-119267 Msa0867380:intron 30.0%
CTTATACATCTCTTCTCTAA+TGG + chr6_1:119476-119495 None:intergenic 30.0%
!!! TTGGTTTTGAAACAACTATC+AGG - chr6_1:119524-119543 Msa0867380:CDS 30.0%
TGAAAACTGGCATAATTATC+TGG - chr6_1:119588-119607 Msa0867380:CDS 30.0%
! CTGGATTTTATAGAAAGAGA+AGG - chr6_1:119607-119626 Msa0867380:CDS 30.0%
ACTGTAAGTCAATCTATAAC+AGG + chr6_1:119692-119711 None:intergenic 30.0%
TTTGCTTGCATTTACATTGT+TGG - chr6_1:120066-120085 Msa0867380:intron 30.0%
! AAAACTACAGCTTTGACATT+TGG + chr6_1:120294-120313 None:intergenic 30.0%
! AAATGTCAAAGCTGTAGTTT+TGG - chr6_1:120293-120312 Msa0867380:intron 30.0%
GTAAACAAAAAACCAACCTA+TGG + chr6_1:120457-120476 None:intergenic 30.0%
!!! ATGTTTTTGGTGGTAAATCG+AGG + chr6_1:115603-115622 None:intergenic 35.0%
! TAAACCCTAACCAAGAGTTT+TGG + chr6_1:115719-115738 None:intergenic 35.0%
GTTTATACTCTCAAACCCTA+GGG - chr6_1:115734-115753 Msa0867380:intron 35.0%
TATGGGAGATAGTGAAACAA+TGG - chr6_1:116259-116278 Msa0867380:intron 35.0%
GTAAATGCATAGCCTGAATT+GGG + chr6_1:116416-116435 None:intergenic 35.0%
AGTAAATGCATAGCCTGAAT+TGG + chr6_1:116417-116436 None:intergenic 35.0%
GGCTATGCATTTACTTATTC+TGG - chr6_1:116422-116441 Msa0867380:intron 35.0%
GCATTTACTTATTCTGGTGA+TGG - chr6_1:116428-116447 Msa0867380:intron 35.0%
TGAGCTTGTAGTACAGAATT+AGG + chr6_1:116476-116495 None:intergenic 35.0%
CACTTCCATTTACAGATGAA+TGG + chr6_1:116601-116620 None:intergenic 35.0%
!! AATGGAAGTGTTGATACAGT+TGG - chr6_1:116611-116630 Msa0867380:CDS 35.0%
GATACAGTTGGACTTGAAAA+TGG - chr6_1:116623-116642 Msa0867380:CDS 35.0%
AATGCATCAGAGAATGTTGA+TGG - chr6_1:116647-116666 Msa0867380:CDS 35.0%
ATGCATCAGAGAATGTTGAT+GGG - chr6_1:116648-116667 Msa0867380:CDS 35.0%
AAACAACTCACAGATGCTTA+CGG - chr6_1:116683-116702 Msa0867380:CDS 35.0%
GTTATGTTAGCATACTCTTC+GGG - chr6_1:116728-116747 Msa0867380:CDS 35.0%
! ATTAACCAATGATGGAGTCA+AGG - chr6_1:116850-116869 Msa0867380:CDS 35.0%
ACAAGCTTACATGAACTACA+AGG + chr6_1:116925-116944 None:intergenic 35.0%
GTGTTGTCAATTGTGGATAA+CGG - chr6_1:117042-117061 Msa0867380:intron 35.0%
!! GATAACGGATAAAACAGTAG+CGG - chr6_1:117057-117076 Msa0867380:intron 35.0%
!!! ATTTTTTCATGCATTGGAGG+TGG - chr6_1:117149-117168 Msa0867380:CDS 35.0%
! GCACTGGTAAACCAATAAAA+TGG + chr6_1:117318-117337 None:intergenic 35.0%
GCAACAAGATATCATGACTT+TGG - chr6_1:117336-117355 Msa0867380:intron 35.0%
GAGATAAGACGTGTATGTTT+AGG + chr6_1:117444-117463 None:intergenic 35.0%
TAAACCTGCATCTGTTTAAC+GGG - chr6_1:117842-117861 Msa0867380:CDS 35.0%
CTCGTAATAAGGGACAAAAA+AGG + chr6_1:117976-117995 None:intergenic 35.0%
CAGAATTCCCTTTGTGTTAT+GGG - chr6_1:118145-118164 Msa0867380:intron 35.0%
TCCAATACCCATAACACAAA+GGG + chr6_1:118155-118174 None:intergenic 35.0%
TTCCAATACCCATAACACAA+AGG + chr6_1:118156-118175 None:intergenic 35.0%
TTTATGAACGAGCTGTTCAA+GGG - chr6_1:118229-118248 Msa0867380:intron 35.0%
TTACATATTCAGTGGACATG+TGG - chr6_1:118253-118272 Msa0867380:intron 35.0%
ATATTCGCTATAAGCACCTA+TGG - chr6_1:118288-118307 Msa0867380:intron 35.0%
! ACAGTACCATCTCCTTTTTA+TGG - chr6_1:118444-118463 Msa0867380:intron 35.0%
! AAAGCTTTTCCGCCATAAAA+AGG + chr6_1:118459-118478 None:intergenic 35.0%
! ACATAGTGGAATCAAAACCA+AGG + chr6_1:118526-118545 None:intergenic 35.0%
AAACTTCATAGTTGTGTGGA+AGG - chr6_1:118601-118620 Msa0867380:intron 35.0%
AACTTCATAGTTGTGTGGAA+GGG - chr6_1:118602-118621 Msa0867380:intron 35.0%
TAACCATTTCAACAGGAAAG+GGG + chr6_1:118640-118659 None:intergenic 35.0%
CTAACCATTTCAACAGGAAA+GGG + chr6_1:118641-118660 None:intergenic 35.0%
AAACAGCTAACCATTTCAAC+AGG + chr6_1:118647-118666 None:intergenic 35.0%
ATCAATTTGCAAATTGCTGC+TGG - chr6_1:118690-118709 Msa0867380:intron 35.0%
TCAATTTGCAAATTGCTGCT+GGG - chr6_1:118691-118710 Msa0867380:intron 35.0%
ATCATACAATGTCCGAGAAA+TGG + chr6_1:118760-118779 None:intergenic 35.0%
! TATTTCAGGCTTTTTGAACG+AGG - chr6_1:118936-118955 Msa0867380:intron 35.0%
TTCTGGTGTAAATCATTGCA+AGG + chr6_1:119049-119068 None:intergenic 35.0%
AGAGAATCCAAATCAGCAAT+TGG - chr6_1:119073-119092 Msa0867380:intron 35.0%
! TATCGATCCAATTGCTGATT+TGG + chr6_1:119083-119102 None:intergenic 35.0%
ATAGAGAGGAGATAGTAGAA+GGG + chr6_1:119214-119233 None:intergenic 35.0%
AATAGAGAGGAGATAGTAGA+AGG + chr6_1:119215-119234 None:intergenic 35.0%
! GTTGAAGTAATTTAGTTCGG+GGG + chr6_1:119240-119259 None:intergenic 35.0%
! CGTTGAAGTAATTTAGTTCG+GGG + chr6_1:119241-119260 None:intergenic 35.0%
! GCGTTGAAGTAATTTAGTTC+GGG + chr6_1:119242-119261 None:intergenic 35.0%
ATCGACCTCTTTCAGAATTA+CGG - chr6_1:119299-119318 Msa0867380:intron 35.0%
ATTAACAGAAGCAGAAGAGT+TGG - chr6_1:119438-119457 Msa0867380:intron 35.0%
!! GAGTTCGATTCTAAGATCAT+TGG - chr6_1:119505-119524 Msa0867380:CDS 35.0%
!!! GTTTTGAAACAACTATCAGG+AGG - chr6_1:119527-119546 Msa0867380:CDS 35.0%
ACGTACGACCTCTTAATATT+GGG - chr6_1:119560-119579 Msa0867380:CDS 35.0%
GCACTTATAAGAAAGCAGTT+TGG + chr6_1:119650-119669 None:intergenic 35.0%
GTTTCTTCATCCAACAGAAT+AGG + chr6_1:119755-119774 None:intergenic 35.0%
ATTGAACTGAGACTAAAGCA+TGG - chr6_1:119788-119807 Msa0867380:CDS 35.0%
TTGAACTGAGACTAAAGCAT+GGG - chr6_1:119789-119808 Msa0867380:CDS 35.0%
! TTCAAACCCTAATTTGTCAG+TGG - chr6_1:119842-119861 Msa0867380:CDS 35.0%
GAATGTCCACTGACAAATTA+GGG + chr6_1:119851-119870 None:intergenic 35.0%
AGAATGTCCACTGACAAATT+AGG + chr6_1:119852-119871 None:intergenic 35.0%
AATTTGTCAGTGGACATTCT+AGG - chr6_1:119852-119871 Msa0867380:CDS 35.0%
AGTGTGAATGTTATGAATGC+AGG - chr6_1:119908-119927 Msa0867380:intron 35.0%
! GATACGCTATGTTTTGTGTA+TGG - chr6_1:120193-120212 Msa0867380:intron 35.0%
! ATGTTTTGTGTATGGAAGCT+AGG - chr6_1:120201-120220 Msa0867380:intron 35.0%
! TGTTTTGTGTATGGAAGCTA+GGG - chr6_1:120202-120221 Msa0867380:intron 35.0%
TTGCAAATAATGTTCTCGCT+CGG - chr6_1:120237-120256 Msa0867380:intron 35.0%
CAACACTAAAAAGCAGCAAA+TGG + chr6_1:120322-120341 None:intergenic 35.0%
!! TATAATGGACTACTAGCCAT+AGG - chr6_1:120393-120412 Msa0867380:intron 35.0%
ATAGTGTGTCAATACACCAT+AGG - chr6_1:120438-120457 Msa0867380:intron 35.0%
TACCTGATTGTAAATGGTGA+AGG - chr6_1:120474-120493 Msa0867380:five_prime_UTR 35.0%
ACCTGATTGTAAATGGTGAA+GGG - chr6_1:120475-120494 Msa0867380:five_prime_UTR 35.0%
!! TTGTCTTTTATTTCCCCATC+AGG - chr6_1:120558-120577 Msa0867380:five_prime_UTR 35.0%
!! TGTCTTTTATTTCCCCATCA+GGG - chr6_1:120559-120578 Msa0867380:five_prime_UTR 35.0%
GGATGGAAATTTGCGAAGTA+GGG + chr6_1:115582-115601 None:intergenic 40.0%
AGGATGGAAATTTGCGAAGT+AGG + chr6_1:115583-115602 None:intergenic 40.0%
!! TTTTGGTGGTAAATCGAGGA+TGG + chr6_1:115599-115618 None:intergenic 40.0%
! GTAGCTTCCGATGATGTTTT+TGG + chr6_1:115616-115635 None:intergenic 40.0%
TCGATTGCTTCCAAAACTCT+TGG - chr6_1:115706-115725 Msa0867380:intron 40.0%
TGCTTCCAAAACTCTTGGTT+AGG - chr6_1:115711-115730 Msa0867380:intron 40.0%
GCTTCCAAAACTCTTGGTTA+GGG - chr6_1:115712-115731 Msa0867380:intron 40.0%
GGTTTATACTCTCAAACCCT+AGG - chr6_1:115733-115752 Msa0867380:intron 40.0%
ATGGGAATGCTTATACTGCT+GGG - chr6_1:116447-116466 Msa0867380:intron 40.0%
GCTGACCATTCATCTGTAAA+TGG - chr6_1:116593-116612 Msa0867380:CDS 40.0%
! ATCAGAGAATGTTGATGGGT+CGG - chr6_1:116652-116671 Msa0867380:CDS 40.0%
GCTAACATAACAGACAGAGA+AGG + chr6_1:116719-116738 None:intergenic 40.0%
TAAGTCCTTGACTCCATCAT+TGG + chr6_1:116858-116877 None:intergenic 40.0%
GGCCTAAATGAACTATTTGC+TGG + chr6_1:116904-116923 None:intergenic 40.0%
AATATTCCGCTACGCTATAG+CGG - chr6_1:117086-117105 Msa0867380:CDS 40.0%
!!! CTTTGAAATTTTTCCAGGCC+TGG - chr6_1:117210-117229 Msa0867380:intron 40.0%
GTCAAGATCCAATTCAAACC+AGG + chr6_1:117231-117250 None:intergenic 40.0%
GTCATGATATCTTGTTGCAC+TGG + chr6_1:117334-117353 None:intergenic 40.0%
! TAAGCCACTTCTGCGATTTT+TGG - chr6_1:117384-117403 Msa0867380:intron 40.0%
ACATCCAAAAATCGCAGAAG+TGG + chr6_1:117391-117410 None:intergenic 40.0%
! TTTACTGAGTTGGCTGATTC+AGG - chr6_1:117418-117437 Msa0867380:intron 40.0%
TTTGATTGACGAGACAGAGA+AGG - chr6_1:117646-117665 Msa0867380:intron 40.0%
AAGACGTGAATTACATGTCG+AGG - chr6_1:117701-117720 Msa0867380:CDS 40.0%
AAACCTGCATCTGTTTAACG+GGG - chr6_1:117843-117862 Msa0867380:CDS 40.0%
!! ATTTCTCTGGTTCTGTCTGT+CGG - chr6_1:117914-117933 Msa0867380:CDS 40.0%
AACACAAAGGGAATTCTGCT+AGG + chr6_1:118143-118162 None:intergenic 40.0%
GCAGAATTCCCTTTGTGTTA+TGG - chr6_1:118144-118163 Msa0867380:intron 40.0%
TCCCTTTGTGTTATGGGTAT+TGG - chr6_1:118151-118170 Msa0867380:intron 40.0%
GAAGAAATATGCTGACCATG+AGG - chr6_1:118173-118192 Msa0867380:intron 40.0%
GTTTATGAACGAGCTGTTCA+AGG - chr6_1:118228-118247 Msa0867380:intron 40.0%
TTATGAACGAGCTGTTCAAG+GGG - chr6_1:118230-118249 Msa0867380:intron 40.0%
TCAAGGGGTTACATATTCAG+TGG - chr6_1:118245-118264 Msa0867380:intron 40.0%
TATTACCTACGAACTGTGTC+TGG + chr6_1:118318-118337 None:intergenic 40.0%
ACACAGTTCGTAGGTAATAG+AGG - chr6_1:118319-118338 Msa0867380:intron 40.0%
! GTACCATCTCCTTTTTATGG+CGG - chr6_1:118447-118466 Msa0867380:intron 40.0%
TTTCCGCCATAAAAAGGAGA+TGG + chr6_1:118453-118472 None:intergenic 40.0%
! TTATGGCGGAAAAGCTTTGA+TGG - chr6_1:118461-118480 Msa0867380:intron 40.0%
! TATGGCGGAAAAGCTTTGAT+GGG - chr6_1:118462-118481 Msa0867380:intron 40.0%
AACCATTTCAACAGGAAAGG+GGG + chr6_1:118639-118658 None:intergenic 40.0%
GCTAACCATTTCAACAGGAA+AGG + chr6_1:118642-118661 None:intergenic 40.0%
TCTATGACTGCTCCATTTCT+CGG - chr6_1:118745-118764 Msa0867380:intron 40.0%
ACTGATGCACATCCATGTAT+GGG + chr6_1:118874-118893 None:intergenic 40.0%
TACTGATGCACATCCATGTA+TGG + chr6_1:118875-118894 None:intergenic 40.0%
CATGGATGTGCATCAGTAAA+TGG - chr6_1:118877-118896 Msa0867380:intron 40.0%
CAAGACTGCTTGCTTATTTC+AGG - chr6_1:118922-118941 Msa0867380:intron 40.0%
!! GAACGAGGATTAGCTTATGT+TGG - chr6_1:118951-118970 Msa0867380:intron 40.0%
TGGTGTAAATCATTGCAAGG+CGG + chr6_1:119046-119065 None:intergenic 40.0%
TAGAGAGGAGATAGTAGAAG+GGG + chr6_1:119213-119232 None:intergenic 40.0%
!! TAAATGGTGTTGCAGCTTCA+AGG - chr6_1:119264-119283 Msa0867380:intron 40.0%
AATACAGCACTTGCAGGTTT+AGG + chr6_1:119421-119440 None:intergenic 40.0%
TCTGTTAATACAGCACTTGC+AGG + chr6_1:119427-119446 None:intergenic 40.0%
CACGTACGACCTCTTAATAT+TGG - chr6_1:119559-119578 Msa0867380:CDS 40.0%
CGTACGACCTCTTAATATTG+GGG - chr6_1:119561-119580 Msa0867380:CDS 40.0%
TCAAGCTCCCCAATATTAAG+AGG + chr6_1:119571-119590 None:intergenic 40.0%
ATATTGGGGAGCTTGAAAAC+TGG - chr6_1:119575-119594 Msa0867380:CDS 40.0%
AAGTGCACATCCTATTCTGT+TGG - chr6_1:119742-119761 Msa0867380:CDS 40.0%
TAAAGCATGGGCCTACAAAT+TGG - chr6_1:119801-119820 Msa0867380:CDS 40.0%
! GCCTACAAATTGGTTTCTTG+AGG - chr6_1:119811-119830 Msa0867380:CDS 40.0%
GCCTCAAGAAACCAATTTGT+AGG + chr6_1:119815-119834 None:intergenic 40.0%
TCTTCATAATCACCTGTCTC+AGG - chr6_1:119941-119960 Msa0867380:intron 40.0%
! GTCCCTCTTTTCATATACGA+GGG - chr6_1:119972-119991 Msa0867380:intron 40.0%
! TCCCTCTTTTCATATACGAG+GGG - chr6_1:119973-119992 Msa0867380:intron 40.0%
TATCCAGTACTCGGGATAAT+TGG + chr6_1:120177-120196 None:intergenic 40.0%
AACATAGCGTATCCAGTACT+CGG + chr6_1:120186-120205 None:intergenic 40.0%
TATGGAAGCTAGGGAAAGTA+TGG - chr6_1:120211-120230 Msa0867380:intron 40.0%
TGCAAATAATGTTCTCGCTC+GGG - chr6_1:120238-120257 Msa0867380:intron 40.0%
TGTGTCAATACACCATAGGT+TGG - chr6_1:120442-120461 Msa0867380:intron 40.0%
CCTGATTGTAAATGGTGAAG+GGG - chr6_1:120476-120495 Msa0867380:five_prime_UTR 40.0%
TTCTATTCTCGGCTAAACGA+AGG + chr6_1:120585-120604 None:intergenic 40.0%
AAAGTAGAACCTCACACGCT+CGG - chr6_1:115554-115573 Msa0867380:CDS 45.0%
!!! GCTTCCGATGATGTTTTTGG+TGG + chr6_1:115613-115632 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGAA+CGG + chr6_1:115675-115694 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCATA+AGG - chr6_1:115679-115698 Msa0867380:intron 45.0%
TTGTTATCTCAGGGCCTGTT+TGG - chr6_1:115886-115905 Msa0867380:intron 45.0%
! GTGTTGTTGTAAGCATCCGA+TGG + chr6_1:116314-116333 None:intergenic 45.0%
GGAACATTAGCACCAACCTT+GGG + chr6_1:116353-116372 None:intergenic 45.0%
AGGAACATTAGCACCAACCT+TGG + chr6_1:116354-116373 None:intergenic 45.0%
GATGGGAATGCTTATACTGC+TGG - chr6_1:116446-116465 Msa0867380:intron 45.0%
TGGGAATGCTTATACTGCTG+GGG - chr6_1:116448-116467 Msa0867380:intron 45.0%
ACCAGACTGGAATCCTCATT+AGG + chr6_1:116539-116558 None:intergenic 45.0%
AATGAGGATTCCAGTCTGGT+TGG - chr6_1:116539-116558 Msa0867380:CDS 45.0%
ACTATACCGCTATAGCGTAG+CGG + chr6_1:117095-117114 None:intergenic 45.0%
! TTTCCAGGCCTGGTTTGAAT+TGG - chr6_1:117220-117239 Msa0867380:intron 45.0%
CTGCTGAAGAAGATCGATTG+TGG - chr6_1:117579-117598 Msa0867380:intron 45.0%
AACCTGCATCTGTTTAACGG+GGG - chr6_1:117844-117863 Msa0867380:CDS 45.0%
AGTTATGTGGGCGATTTCTC+TGG - chr6_1:117901-117920 Msa0867380:CDS 45.0%
CAACTTTATCAGCAGAGCCA+AGG + chr6_1:118203-118222 None:intergenic 45.0%
AACTGTGTCTGGATCTCCAT+AGG + chr6_1:118307-118326 None:intergenic 45.0%
AAGGAGATGGTACTGTTGCA+CGG + chr6_1:118440-118459 None:intergenic 45.0%
ACCATTTCAACAGGAAAGGG+GGG + chr6_1:118638-118657 None:intergenic 45.0%
GGAAGATCTCGTCTGGTTAA+GGG - chr6_1:118712-118731 Msa0867380:intron 45.0%
GAGAAATGGAGCAGTCATAG+AGG + chr6_1:118746-118765 None:intergenic 45.0%
AGGAAGGTAAATGCAGCGTT+TGG - chr6_1:118787-118806 Msa0867380:intron 45.0%
ACAGCAGCACTAGTGTTCTA+AGG + chr6_1:118849-118868 None:intergenic 45.0%
ATGAGTACATGCAGCAAGAC+TGG - chr6_1:119018-119037 Msa0867380:intron 45.0%
TGAGTACATGCAGCAAGACT+GGG - chr6_1:119019-119038 Msa0867380:intron 45.0%
GGTGTAAATCATTGCAAGGC+GGG + chr6_1:119045-119064 None:intergenic 45.0%
TAGTTCGGGGGAAAATAGAG+AGG + chr6_1:119228-119247 None:intergenic 45.0%
! GCTGTCCGTAATTCTGAAAG+AGG + chr6_1:119307-119326 None:intergenic 45.0%
GGAGAATTATCTGCACCATC+AGG + chr6_1:119400-119419 None:intergenic 45.0%
AGAGGTCGTACGTGAAAGTA+GGG + chr6_1:119553-119572 None:intergenic 45.0%
AAGAGGTCGTACGTGAAAGT+AGG + chr6_1:119554-119573 None:intergenic 45.0%
ATAATCACCTGTCTCAGGCA+AGG - chr6_1:119946-119965 Msa0867380:intron 45.0%
! GGTCCCTCTTTTCATATACG+AGG - chr6_1:119971-119990 Msa0867380:intron 45.0%
GCCCCTCGTATATGAAAAGA+GGG + chr6_1:119977-119996 None:intergenic 45.0%
ACATAGCGTATCCAGTACTC+GGG + chr6_1:120185-120204 None:intergenic 45.0%
CCCCTTCACCATTTACAATC+AGG + chr6_1:120479-120498 None:intergenic 45.0%
AAAATGGGTCATTGGCAACG+CGG + chr6_1:120620-120639 None:intergenic 45.0%
TGCTGCTGAGACGTATCCAT+CGG - chr6_1:116295-116314 Msa0867380:intron 50.0%
CTTGGGAACAGGATTCGAAG+CGG + chr6_1:116336-116355 None:intergenic 50.0%
TCGAATCCTGTTCCCAAGGT+TGG - chr6_1:116338-116357 Msa0867380:intron 50.0%
TTAGCACCAACCTTGGGAAC+AGG + chr6_1:116347-116366 None:intergenic 50.0%
AACGAGTCAAAGCAAGCTGC+TGG - chr6_1:116509-116528 Msa0867380:intron 50.0%
GCCTAATGAGGATTCCAGTC+TGG - chr6_1:116535-116554 Msa0867380:CDS 50.0%
GGATTCCAGTCTGGTTGGAA+AGG - chr6_1:116544-116563 Msa0867380:CDS 50.0%
AGCTTCCTTTCCAACCAGAC+TGG + chr6_1:116552-116571 None:intergenic 50.0%
TCTGGTTGGAAAGGAAGCTC+TGG - chr6_1:116553-116572 Msa0867380:CDS 50.0%
GCTACGCTATAGCGGTATAG+TGG - chr6_1:117094-117113 Msa0867380:CDS 50.0%
TGCATTGGAGGTGGCGTTTA+AGG - chr6_1:117158-117177 Msa0867380:CDS 50.0%
GATCCAATTCAAACCAGGCC+TGG + chr6_1:117226-117245 None:intergenic 50.0%
GATTGACGAGACAGAGAAGG+TGG - chr6_1:117649-117668 Msa0867380:intron 50.0%
GAGATCCAGACACAGTTCGT+AGG - chr6_1:118310-118329 Msa0867380:intron 50.0%
!! GTTGCACGGTCTCTGAAATC+AGG + chr6_1:118426-118445 None:intergenic 50.0%
CCATTTCAACAGGAAAGGGG+GGG + chr6_1:118637-118656 None:intergenic 50.0%
GGGAAGATCTCGTCTGGTTA+AGG - chr6_1:118711-118730 Msa0867380:intron 50.0%
TCGTCTGGTTAAGGGCTAGA+TGG - chr6_1:118720-118739 Msa0867380:intron 50.0%
!! GTGCTGCTGTTTCCCATACA+TGG - chr6_1:118859-118878 Msa0867380:intron 50.0%
GTGTTGCAGCTTCAAGGAGT+TGG - chr6_1:119270-119289 Msa0867380:intron 50.0%
!! AGTGGCAGGTGTTGTTTCAG+AGG - chr6_1:119342-119361 Msa0867380:intron 50.0%
!! GTGGCAGGTGTTGTTTCAGA+GGG - chr6_1:119343-119362 Msa0867380:intron 50.0%
!! GTTTCAGAGGGTACTGACCA+AGG - chr6_1:119355-119374 Msa0867380:intron 50.0%
!! GGTACTGACCAAGGTGTTGA+AGG - chr6_1:119364-119383 Msa0867380:intron 50.0%
!! TGACCAAGGTGTTGAAGGAG+AGG - chr6_1:119369-119388 Msa0867380:intron 50.0%
GAACCTCTCCTTCAACACCT+TGG + chr6_1:119375-119394 None:intergenic 50.0%
GAAGGAGAGGTTCATCCTGA+TGG - chr6_1:119382-119401 Msa0867380:intron 50.0%
AAGAGAAGGCGACTTGAGCA+AGG - chr6_1:119621-119640 Msa0867380:CDS 50.0%
GGCCCCTCGTATATGAAAAG+AGG + chr6_1:119978-119997 None:intergenic 50.0%
GTACTCGGGATAATTGGCAC+AGG + chr6_1:120171-120190 None:intergenic 50.0%
GTGCCAATTATCCCGAGTAC+TGG - chr6_1:120171-120190 Msa0867380:intron 50.0%
! GGCGAGCCAAGTTTTTGTCA+AGG - chr6_1:120259-120278 Msa0867380:intron 50.0%
CGCTTCGAATCCTGTTCCCA+AGG - chr6_1:116334-116353 Msa0867380:intron 55.0%
! AGCTGCTGGAGTGCCTAATG+AGG - chr6_1:116523-116542 Msa0867380:intron 55.0%
!! GGAAGCTCTGGACTCTGCTA+TGG - chr6_1:116565-116584 Msa0867380:CDS 55.0%
CACCCCCGTTAAACAGATGC+AGG + chr6_1:117849-117868 None:intergenic 55.0%
CCCCCCCTTTCCTGTTGAAA+TGG - chr6_1:118634-118653 Msa0867380:intron 55.0%
AGCTGATGAAGCTGCTGCAG+TGG - chr6_1:119324-119343 Msa0867380:intron 55.0%
ATCACCTGTCTCAGGCAAGG+AGG - chr6_1:119949-119968 Msa0867380:intron 55.0%
TCACCTGTCTCAGGCAAGGA+GGG - chr6_1:119950-119969 Msa0867380:intron 55.0%
GCTAAACGAAGGCCCTGATG+GGG + chr6_1:120574-120593 None:intergenic 55.0%
GGCTAAACGAAGGCCCTGAT+GGG + chr6_1:120575-120594 None:intergenic 55.0%
TAATGTTCCTGCCCCAGCCG+AGG - chr6_1:116364-116383 Msa0867380:intron 60.0%
AGCAGCTTCTCCTGCAGCCT+CGG + chr6_1:116384-116403 None:intergenic 60.0%
GCTGCTGCTCTGCCCAATTC+AGG - chr6_1:116401-116420 Msa0867380:intron 60.0%
CGAGACAGAGAAGGTGGCAG+AGG - chr6_1:117655-117674 Msa0867380:intron 60.0%
GCTGCTGGGAAGATCTCGTC+TGG - chr6_1:118705-118724 Msa0867380:intron 60.0%
GATGAAGCTGCTGCAGTGGC+AGG - chr6_1:119328-119347 Msa0867380:intron 60.0%
CGGCTAAACGAAGGCCCTGA+TGG + chr6_1:120576-120595 None:intergenic 60.0%
!! AGTAGGGCACCGAGCGTGTG+AGG + chr6_1:115566-115585 None:intergenic 65.0%
TTCTCCTGCAGCCTCGGCTG+GGG + chr6_1:116378-116397 None:intergenic 65.0%
CTTCTCCTGCAGCCTCGGCT+GGG + chr6_1:116379-116398 None:intergenic 65.0%
GGACCCTCCTTGCCTGAGAC+AGG + chr6_1:119956-119975 None:intergenic 65.0%
! TACTCCGTGGCGGGACAGAG+AGG + chr6_1:119999-120018 None:intergenic 65.0%
GCTTCTCCTGCAGCCTCGGC+TGG + chr6_1:116380-116399 None:intergenic 70.0%
GCTGACCATGAGGCGCGCCT+TGG - chr6_1:118183-118202 Msa0867380:intron 70.0%
CAGAGCCAAGGCGCGCCTCA+TGG + chr6_1:118191-118210 None:intergenic 70.0%
GGGGCCTCTCTGTCCCGCCA+CGG - chr6_1:119992-120011 Msa0867380:intron 75.0%
! CCTGCAGCCTCGGCTGGGGC+AGG + chr6_1:116374-116393 None:intergenic 80.0%
! CCTGCCCCAGCCGAGGCTGC+AGG - chr6_1:116371-116390 Msa0867380:intron 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 115525 120645 115525 ID=Msa0867380;Name=Msa0867380
chr6_1 mRNA 115525 120645 115525 ID=Msa0867380-mRNA-1;Parent=Msa0867380;Name=Msa0867380-mRNA-1;_AED=0.22;_eAED=0.22;_QI=191|0.62|0.66|0.88|0.87|0.77|9|0|534
chr6_1 exon 115525 115590 115525 ID=Msa0867380-mRNA-1:exon:88;Parent=Msa0867380-mRNA-1
chr6_1 exon 115890 116033 115890 ID=Msa0867380-mRNA-1:exon:87;Parent=Msa0867380-mRNA-1
chr6_1 exon 116528 116891 116528 ID=Msa0867380-mRNA-1:exon:86;Parent=Msa0867380-mRNA-1
chr6_1 exon 117059 117226 117059 ID=Msa0867380-mRNA-1:exon:85;Parent=Msa0867380-mRNA-1
chr6_1 exon 117656 117736 117656 ID=Msa0867380-mRNA-1:exon:84;Parent=Msa0867380-mRNA-1
chr6_1 exon 117839 118068 117839 ID=Msa0867380-mRNA-1:exon:83;Parent=Msa0867380-mRNA-1
chr6_1 exon 118494 118600 118494 ID=Msa0867380-mRNA-1:exon:82;Parent=Msa0867380-mRNA-1
chr6_1 exon 119466 119925 119466 ID=Msa0867380-mRNA-1:exon:81;Parent=Msa0867380-mRNA-1
chr6_1 exon 120470 120645 120470 ID=Msa0867380-mRNA-1:exon:80;Parent=Msa0867380-mRNA-1
chr6_1 five_prime_UTR 120470 120645 120470 ID=Msa0867380-mRNA-1:five_prime_utr;Parent=Msa0867380-mRNA-1
chr6_1 five_prime_UTR 119911 119925 119911 ID=Msa0867380-mRNA-1:five_prime_utr;Parent=Msa0867380-mRNA-1
chr6_1 CDS 119466 119910 119466 ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1
chr6_1 CDS 118494 118600 118494 ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1
chr6_1 CDS 117839 118068 117839 ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1
chr6_1 CDS 117656 117736 117656 ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1
chr6_1 CDS 117059 117226 117059 ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1
chr6_1 CDS 116528 116891 116528 ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1
chr6_1 CDS 115890 116033 115890 ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1
chr6_1 CDS 115525 115590 115525 ID=Msa0867380-mRNA-1:cds;Parent=Msa0867380-mRNA-1
Gene Sequence

>Msa0867380

ATGGGAGATAGTGAAACAATGGTTGCAGAAGCATCTGCTGCTGAGACGTATCCATCGGATGCTTACAACAACACCGCTTCGAATCCTGTTCCCAAGGTTGGTGCTAATGTTCCTGCCCCAGCCGAGGCTGCAGGAGAAGCTGCTGCTGCTCTGCCCAATTCAGGCTATGCATTTACTTATTCTGGTGATGGGAATGCTTATACTGCTGGGGATCCTAATTCTGTACTACAAGCTCAATTTAGTGCAACAAACGAGTCAAAGCAAGCTGCTGGAGTGCCTAATGAGGATTCCAGTCTGGTTGGAAAGGAAGCTCTGGACTCTGCTATGGTCTCTGCTGACCATTCATCTGTAAATGGAAGTGTTGATACAGTTGGACTTGAAAATGGAAATGCATCAGAGAATGTTGATGGGTCGGCTGATGAGAAACAACTCACAGATGCTTACGCTGCGTTGTCTGCTGAAGAAGATCGATTGTGGAATATTGTAACAGCTAATTCTTCTGATTTTACTGCTTGGACTTCTTTGATTGACGAGACAGAGAAGGTGGCAGAGAACAATATTTTGAAGATGCGTAGAGTCTATGATGCTTTCCTAGCAGAATTCCCTTTGTGTTATGGGTATTGGAAGAAATATGCTGACCATGAGGCGCGCCTTGGCTCTGCTGATAAAGTTGTTGAAGTTTATGAACGAGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTCGCTATAAGCACCTATGGAGATCCAGACACAGTTCGTAGAGACCGTGCAACAGTACCATCTCCTTTTTATGGCGGAAAAGCTTTGATGGGATTGCATGTCAGAATGTTTTCCATTCTGATGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCGTTTCCTCTTTGGGATAAATACATTGAATATGAGTACATGCAGCAAGACTGGGCCCGCCTTGCAATGATTTACACCAGAATATTAGAGAATCCAAATCAGCAATTGGATCGATATTTCAACAGCTTCAAGGAGTTGGCTAGTAATCGACCTCTTTCAGAATTACGGACAGCTGATGAAGCTGCTGCAGTGGCAGGTGTTGTTTCAGAGGGTACTGACCAAGGTGTTGAAGGAGAGGTTCATCCTGATGGTGCAGATAATTCTCCTAAACCTGCAAGTGCTGTATTAACAGAAGCAGAAGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAACTATCAGGAGGCCCTACTTTCACGTACGACCTCTTAATATTGGGGAGCTTGAAAACTGGCATAATTATCTGGATTTTATAGAAAGAGAAGGCGACTTGAGCAAGATTGTCAAGTTGTATGAGAGATGTGTCATTGCCTGTGCCAATTATCCCGAGTACTGGATACGCTATGTTTTGTGTATGGAAGCTAGGGAAAGTATGGATCTTGCAAATAATGTTCTCGCTCGGGCGAGCCAAGTTTTTGTCAAGGGCCTTCGTTTAGCCGAGAATAGAAATCTTATGTACACCGCGTTGCCAATGACCCATTTTGTATAA

Protein sequence

>Msa0867380

MGDSETMVAEASAAETYPSDAYNNTASNPVPKVGANVPAPAEAAGEAAAALPNSGYAFTYSGDGNAYTAGDPNSVLQAQFSATNESKQAAGVPNEDSSLVGKEALDSAMVSADHSSVNGSVDTVGLENGNASENVDGSADEKQLTDAYAALSAEEDRLWNIVTANSSDFTAWTSLIDETEKVAENNILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRDRATVPSPFYGGKALMGLHVRMFSILMLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFNSFKELASNRPLSELRTADEAAAVAGVVSEGTDQGVEGEVHPDGADNSPKPASAVLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETTIRRPYFHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEARESMDLANNVLARASQVFVKGLRLAENRNLMYTALPMTHFV*