AlfalfaGEDB | Msa0868740

M. sativa cultivar zhongmu-4 / Msa0868740

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868740	RHN49723.1	94.326	141	8	0	1	141	59	199	6.50e-96	285

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868740	sp\|Q8L8Q3\|LBD25_ARATH	80.000	110	22	0	3	112	33	142	1.46e-64	196

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868740	A0A396HAP9	94.326	141	8	0	1	141	59	199	3.11e-96	285

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TFs/TRs:

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Gene ID	Type	Classification
Msa0868740	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0868740	Msa0937660	0.849494	3.118496e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868740	MtrunA17_Chr6g0449651	94.326	141	8	0	1	141	59	199	5.98e-100	285
Msa0868740	MtrunA17_Chr6g0449641	89.286	140	15	0	1	140	1	140	5.05e-92	263
Msa0868740	MtrunA17_Chr7g0227511	86.607	112	15	0	2	113	4	115	1.04e-69	207
Msa0868740	MtrunA17_Chr3g0117121	80.870	115	21	1	1	114	1	115	1.52e-64	195
Msa0868740	MtrunA17_Chr4g0058651	80.374	107	21	0	7	113	9	115	5.58e-63	191
Msa0868740	MtrunA17_Chr5g0437571	52.055	146	59	1	7	141	4	149	2.67e-49	155
Msa0868740	MtrunA17_Chr4g0043421	63.810	105	38	0	8	112	14	118	1.80e-48	153
Msa0868740	MtrunA17_Chr2g0311601	57.025	121	44	1	8	128	12	124	4.40e-48	152
Msa0868740	MtrunA17_Chr3g0115431	64.602	113	40	0	1	113	1	113	6.19e-48	154
Msa0868740	MtrunA17_Chr5g0402611	65.455	110	38	0	3	112	2	111	1.15e-47	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868740	AT3G27650.1	80.000	110	22	0	3	112	33	142	1.49e-65	196
Msa0868740	AT5G63090.4	74.400	125	30	1	1	123	1	125	2.89e-63	192
Msa0868740	AT5G63090.3	74.400	125	30	1	1	123	1	125	2.89e-63	192
Msa0868740	AT5G63090.2	74.400	125	30	1	1	123	1	125	2.89e-63	192
Msa0868740	AT5G63090.1	74.400	125	30	1	1	123	1	125	2.89e-63	192
Msa0868740	AT1G65620.1	66.379	116	39	0	1	116	1	116	1.18e-48	155
Msa0868740	AT1G65620.4	66.379	116	39	0	1	116	1	116	1.18e-48	155
Msa0868740	AT1G65620.3	66.379	116	39	0	1	116	1	116	1.18e-48	155
Msa0868740	AT1G65620.5	66.379	116	39	0	1	116	1	116	1.18e-48	155
Msa0868740	AT1G65620.2	66.379	116	39	0	1	116	1	116	1.18e-48	155

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Find 24 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTATGAGGCTCTTCTGG+TGG	0.540828	6_1:-2487715	None:intergenic
AATCCAGTGTATGGTTGTGT+TGG	0.555823	6_1:+2487859	Msa0868740:CDS
AATCCTTGCTTCAGCTTCAT+AGG	0.299183	6_1:-2487833	None:intergenic
ACAACTCTTTAGGCTCCAAA+AGG	0.536437	6_1:+2487903	Msa0868740:CDS
ACTGTATCCTCCCTTTGATG+AGG	0.610482	6_1:-2487799	None:intergenic
ACTTATGAGGCTCTTCTGGT+GGG	0.610191	6_1:-2487714	None:intergenic
AGAAACTTGCAAGCAGCACA+TGG	0.591215	6_1:-2487649	None:intergenic
AGTCTTACCTCATCAAAGGG+AGG	0.699522	6_1:+2487792	Msa0868740:CDS
ATGAAGTCTTACCTCATCAA+AGG	0.530030	6_1:+2487788	Msa0868740:CDS
ATGTCATTGCTGAAATTTGA+AGG	0.464467	6_1:-2488024	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAACATTTGCAAACTTATG+AGG	-	chr6_1:2487730-2487749	None:intergenic	30.0%
AGGATTAAAAATCCAGTGTA+TGG	+	chr6_1:2487850-2487869	Msa0868740:CDS	30.0%
TGTCATTGCTGAAATTTGAA+GGG	-	chr6_1:2488026-2488045	None:intergenic	30.0%
ATGTCATTGCTGAAATTTGA+AGG	-	chr6_1:2488027-2488046	None:intergenic	30.0%
AAGGTGCAAAAATGCAATCT+TGG	-	chr6_1:2487690-2487709	None:intergenic	35.0%
ATGAAGTCTTACCTCATCAA+AGG	+	chr6_1:2487788-2487807	Msa0868740:CDS	35.0%
TGAAGTCTTACCTCATCAAA+GGG	+	chr6_1:2487789-2487808	Msa0868740:CDS	35.0%
TGGAGAATTTGAGTAGCTTG+AGG	-	chr6_1:2487632-2487651	None:intergenic	40.0%
AATCCTTGCTTCAGCTTCAT+AGG	-	chr6_1:2487836-2487855	None:intergenic	40.0%
AATCCAGTGTATGGTTGTGT+TGG	+	chr6_1:2487859-2487878	Msa0868740:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	2487625	2488050	2487625	ID=Msa0868740;Name=Msa0868740
chr6_1	mRNA	2487625	2488050	2487625	ID=Msa0868740-mRNA-1;Parent=Msa0868740;Name=Msa0868740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|141
chr6_1	exon	2487625	2488050	2487625	ID=Msa0868740-mRNA-1:exon:693;Parent=Msa0868740-mRNA-1
chr6_1	CDS	2487625	2488050	2487625	ID=Msa0868740-mRNA-1:cds;Parent=Msa0868740-mRNA-1

Gene Sequence

>Msa0868740

ATGGCCTCAAGCTACTCAAATTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGCAACCAAGATTGCATTTTTGCACCTTATTTCCCACCAGAAGAGCCTCATAAGTTTGCAAATGTTCACAAAGTATTTGGTGCAAGCAATGTTAGCAAAATTCTTAATGAAGTCTTACCTCATCAAAGGGAGGATACAGTGAATTCTCTTGCCTATGAAGCTGAAGCAAGGATTAAAAATCCAGTGTATGGTTGTGTTGGAGCTATTTCAGCGCTTCAAGGACAACTCTTTAGGCTCCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTCGTTTTACTCATGAAGGTTCTTCTTCTCTTGGTCTTGGACAATTTCACTCTGATGACTTTTTAAATTACCCTTCAAATTTCAGCAATGACATGTGA

Protein sequence

>Msa0868740

MASSYSNSPCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKVFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKNPVYGCVGAISALQGQLFRLQKELDATNADLIRFTHEGSSSLGLGQFHSDDFLNYPSNFSNDM*