Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870340 | KEH21136.1 | 59.770 | 87 | 35 | 0 | 149 | 235 | 71 | 157 | 2.22e-28 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870340 | A0A072TVC5 | 59.770 | 87 | 35 | 0 | 149 | 235 | 71 | 157 | 1.06e-28 | 116 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737340 | Msa0870340 | 0.811178 | 7.972648e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870340 | MtrunA17_Chr3g0087691 | 44.615 | 130 | 58 | 2 | 106 | 235 | 394 | 509 | 2.07e-24 | 101 |
| Msa0870340 | MtrunA17_Chr2g0332521 | 36.585 | 123 | 76 | 1 | 1 | 123 | 673 | 793 | 2.62e-19 | 87.0 |
| Msa0870340 | MtrunA17_Chr1g0203991 | 53.333 | 60 | 28 | 0 | 176 | 235 | 9 | 68 | 1.49e-17 | 76.3 |
| Msa0870340 | MtrunA17_Chr6g0469381 | 36.207 | 116 | 60 | 2 | 108 | 223 | 5 | 106 | 5.15e-17 | 74.7 |
| Msa0870340 | MtrunA17_Chr1g0180641 | 43.678 | 87 | 49 | 0 | 149 | 235 | 1 | 87 | 7.36e-17 | 74.7 |
| Msa0870340 | MtrunA17_Chr8g0391961 | 43.590 | 78 | 44 | 0 | 149 | 226 | 27 | 104 | 1.91e-16 | 73.9 |
| Msa0870340 | MtrunA17_Chr6g0455331 | 35.632 | 87 | 56 | 0 | 149 | 235 | 1 | 87 | 2.83e-15 | 70.5 |
| Msa0870340 | MtrunA17_Chr3g0090401 | 55.000 | 60 | 27 | 0 | 176 | 235 | 42 | 101 | 2.89e-15 | 75.5 |
| Msa0870340 | MtrunA17_Chr1g0181271 | 59.184 | 49 | 20 | 0 | 187 | 235 | 1 | 49 | 8.10e-15 | 68.2 |
| Msa0870340 | MtrunA17_Chr7g0242971 | 41.463 | 82 | 48 | 0 | 149 | 230 | 133 | 214 | 2.29e-14 | 70.9 |
| Msa0870340 | MtrunA17_Chr4g0051771 | 41.558 | 77 | 45 | 0 | 159 | 235 | 1 | 77 | 2.89e-14 | 68.2 |
| Msa0870340 | MtrunA17_Chr8g0384791 | 37.778 | 90 | 53 | 1 | 136 | 222 | 274 | 363 | 3.15e-14 | 71.6 |
| Msa0870340 | MtrunA17_Chr3g0123221 | 50.000 | 66 | 33 | 0 | 170 | 235 | 39 | 104 | 1.81e-13 | 66.6 |
| Msa0870340 | MtrunA17_Chr7g0225511 | 45.455 | 66 | 36 | 0 | 146 | 211 | 32 | 97 | 2.81e-12 | 61.6 |
| Msa0870340 | MtrunA17_Chr5g0405881 | 59.574 | 47 | 19 | 0 | 190 | 236 | 1 | 47 | 8.06e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTCTCATTCACAAATTT+AGG | 0.077313 | 6_1:-4751956 | Msa0870340:CDS |
| TCAACATCCACTGAGTATTT+TGG | 0.116974 | 6_1:+4752142 | None:intergenic |
| GTTTCCTCTATTGCTTTAAA+TGG | 0.172735 | 6_1:-4753504 | Msa0870340:CDS |
| TTCGGACAGTGCATACAATT+TGG | 0.220905 | 6_1:-4753593 | Msa0870340:CDS |
| TTAGCTTCGGGTTTGTTTAC+GGG | 0.282678 | 6_1:-4752209 | Msa0870340:intron |
| TTTAGCTTCGGGTTTGTTTA+CGG | 0.292957 | 6_1:-4752210 | Msa0870340:intron |
| TTACTATTTCTACTATTATT+CGG | 0.294192 | 6_1:-4753611 | Msa0870340:CDS |
| TTGGGGATAGGGTCACAGTT+TGG | 0.306342 | 6_1:+4752161 | None:intergenic |
| GATAATTGCATCACCTTTCT+CGG | 0.314614 | 6_1:-4753289 | Msa0870340:CDS |
| CATTCTCATTCACAAATTTA+GGG | 0.322763 | 6_1:-4751955 | Msa0870340:CDS |
| TGGGGATAGGGTCACAGTTT+GGG | 0.335665 | 6_1:+4752162 | None:intergenic |
| TCTAAAACGTCTTAAGCTTA+AGG | 0.339040 | 6_1:+4753413 | None:intergenic |
| AATTTAGGGTGGAGTTTAAT+CGG | 0.349419 | 6_1:-4751941 | Msa0870340:CDS |
| CAATTTATTGAACAACTTCT+CGG | 0.354436 | 6_1:-4753439 | Msa0870340:CDS |
| GTGGCGGCTCATATTCTTGC+TGG | 0.384503 | 6_1:-4751906 | Msa0870340:CDS |
| GAAGTATTGTCCCAATTGTC+TGG | 0.387009 | 6_1:-4753392 | Msa0870340:CDS |
| GTTACCATTTAAAGCAATAG+AGG | 0.388931 | 6_1:+4753500 | None:intergenic |
| ACCTTGAACCACGTAATCAT+TGG | 0.390552 | 6_1:+4753363 | None:intergenic |
| AATAAACAAGTGAGAATTTG+TGG | 0.403968 | 6_1:+4753473 | None:intergenic |
| ATTGGCGACATCCAGACAAT+TGG | 0.409676 | 6_1:+4753381 | None:intergenic |
| GTTTGTTTACGGGATGATGC+TGG | 0.427028 | 6_1:-4752199 | Msa0870340:CDS |
| CTTGCGAGCTACAATGAGTT+AGG | 0.432811 | 6_1:+4753643 | None:intergenic |
| AGGTAAATACAGATGGTTCA+TGG | 0.438892 | 6_1:-4753344 | Msa0870340:CDS |
| ACAGTTTGGGCAAGCACGTA+GGG | 0.444082 | 6_1:+4752175 | None:intergenic |
| GTGGATGTTGACGAAGTCCT+TGG | 0.454571 | 6_1:-4752130 | Msa0870340:CDS |
| GAAAGGTGATGCAATTATCA+TGG | 0.480148 | 6_1:+4753293 | None:intergenic |
| TGGCGGCTCATATTCTTGCT+GGG | 0.488122 | 6_1:-4751905 | Msa0870340:CDS |
| GCCAATGATTACGTGGTTCA+AGG | 0.503158 | 6_1:-4753364 | Msa0870340:CDS |
| ATCCTCCTTCGAGGGGAGGT+TGG | 0.509274 | 6_1:-4753673 | Msa0870340:CDS |
| AATTGATGCATCCTCCTTCG+AGG | 0.509969 | 6_1:-4753682 | Msa0870340:CDS |
| CTACATGCACTACAATGGTT+GGG | 0.520207 | 6_1:-4752103 | Msa0870340:CDS |
| TTGGCGACATCCAGACAATT+GGG | 0.523683 | 6_1:+4753382 | None:intergenic |
| AATTTCTCTTCAAGCGGCGA+AGG | 0.523941 | 6_1:-4753535 | Msa0870340:CDS |
| TATGGGACTAGCTGCTAAAG+TGG | 0.525681 | 6_1:+4751878 | None:intergenic |
| TGGTTGGGTGGGAAGATGAA+AGG | 0.528826 | 6_1:-4753708 | None:intergenic |
| GCTACATGCACTACAATGGT+TGG | 0.530781 | 6_1:-4752104 | Msa0870340:CDS |
| TCACAAAATTTCTCTTCAAG+CGG | 0.547469 | 6_1:-4753541 | Msa0870340:CDS |
| ATGCATCCTCCTTCGAGGGG+AGG | 0.551741 | 6_1:-4753677 | Msa0870340:CDS |
| ACTTGCGAAACAACCGAGAA+AGG | 0.552003 | 6_1:+4753276 | None:intergenic |
| ATGGGTATGCATGCTTCTTG+TGG | 0.554659 | 6_1:-4753325 | Msa0870340:CDS |
| GGTAAATACAGATGGTTCAT+GGG | 0.557351 | 6_1:-4753343 | Msa0870340:CDS |
| ATTGATGCATCCTCCTTCGA+GGG | 0.561541 | 6_1:-4753681 | Msa0870340:CDS |
| AGCCAACCTCCCCTCGAAGG+AGG | 0.569357 | 6_1:+4753671 | None:intergenic |
| CACAGTTTGGGCAAGCACGT+AGG | 0.578404 | 6_1:+4752174 | None:intergenic |
| TAATCGGAGGCAAGCAAATG+TGG | 0.586383 | 6_1:-4751925 | Msa0870340:CDS |
| TCTCATTCACAAATTTAGGG+TGG | 0.591822 | 6_1:-4751952 | Msa0870340:CDS |
| GCAAGCCAACCTCCCCTCGA+AGG | 0.607313 | 6_1:+4753668 | None:intergenic |
| CATTGTAGCTCGCAAGCGCG+AGG | 0.615111 | 6_1:-4753636 | Msa0870340:CDS |
| GATTGCTACATGCACTACAA+TGG | 0.615500 | 6_1:-4752108 | Msa0870340:CDS |
| TGGTTCAAGGTAAATACAGA+TGG | 0.620645 | 6_1:-4753351 | Msa0870340:CDS |
| GTAGTGCATGTAGCAATCCA+AGG | 0.624097 | 6_1:+4752113 | None:intergenic |
| GGCGGCTCATATTCTTGCTG+GGG | 0.624420 | 6_1:-4751904 | Msa0870340:CDS |
| TGCATACAATTTGGATGACG+AGG | 0.637972 | 6_1:-4753584 | Msa0870340:CDS |
| TTAGGGTGGAGTTTAATCGG+AGG | 0.639108 | 6_1:-4751938 | Msa0870340:CDS |
| GGATGTCGCCAATGATTACG+TGG | 0.675377 | 6_1:-4753371 | Msa0870340:CDS |
| TTGATGCATCCTCCTTCGAG+GGG | 0.687318 | 6_1:-4753680 | Msa0870340:CDS |
| CCTATCCCCAAAATACTCAG+TGG | 0.687857 | 6_1:-4752149 | Msa0870340:CDS |
| CAGTTTGGGCAAGCACGTAG+GGG | 0.690705 | 6_1:+4752176 | None:intergenic |
| TCGGAGGCAAGCAAATGTGG+CGG | 0.695690 | 6_1:-4751922 | Msa0870340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACTATTTCTACTATTATT+CGG | - | chr6_1:4751974-4751993 | Msa0870340:CDS | 15.0% |
| !! | TATTATTAAAACCCTAAAAA+AGG | + | chr6_1:4752727-4752746 | None:intergenic | 15.0% |
| !!! | TTTTAATAGAAAACTTTTCA+AGG | + | chr6_1:4753122-4753141 | None:intergenic | 15.0% |
| !!! | TTACTATTTCTACTATTATT+CGG | - | chr6_1:4751974-4751993 | Msa0870340:CDS | 15.0% |
| !! | TATTATTAAAACCCTAAAAA+AGG | + | chr6_1:4752727-4752746 | None:intergenic | 15.0% |
| !!! | TTTTAATAGAAAACTTTTCA+AGG | + | chr6_1:4753122-4753141 | None:intergenic | 15.0% |
| !!! | TTTATCATATTTTTTCGTGA+AGG | - | chr6_1:4752535-4752554 | Msa0870340:intron | 20.0% |
| !!! | ATTCTTGTTCACTATTTTTT+TGG | - | chr6_1:4752701-4752720 | Msa0870340:intron | 20.0% |
| !!! | TATTTTTTTGGCCTTTTTTA+GGG | - | chr6_1:4752713-4752732 | Msa0870340:intron | 20.0% |
| !! | AATGACTAGAAATTCAATTA+AGG | + | chr6_1:4752820-4752839 | None:intergenic | 20.0% |
| !!! | TTCATATATCACATTGATTT+TGG | - | chr6_1:4752953-4752972 | Msa0870340:intron | 20.0% |
| !! | ATGAGAATGAAAAAAGATTT+CGG | + | chr6_1:4753619-4753638 | None:intergenic | 20.0% |
| !!! | TTTATCATATTTTTTCGTGA+AGG | - | chr6_1:4752535-4752554 | Msa0870340:intron | 20.0% |
| !!! | ATTCTTGTTCACTATTTTTT+TGG | - | chr6_1:4752701-4752720 | Msa0870340:intron | 20.0% |
| !!! | TATTTTTTTGGCCTTTTTTA+GGG | - | chr6_1:4752713-4752732 | Msa0870340:intron | 20.0% |
| !! | AATGACTAGAAATTCAATTA+AGG | + | chr6_1:4752820-4752839 | None:intergenic | 20.0% |
| !!! | TTCATATATCACATTGATTT+TGG | - | chr6_1:4752953-4752972 | Msa0870340:intron | 20.0% |
| !! | ATGAGAATGAAAAAAGATTT+CGG | + | chr6_1:4753619-4753638 | None:intergenic | 20.0% |
| ! | AATAAACAAGTGAGAATTTG+TGG | + | chr6_1:4752115-4752134 | None:intergenic | 25.0% |
| ! | CAATTTATTGAACAACTTCT+CGG | - | chr6_1:4752146-4752165 | Msa0870340:CDS | 25.0% |
| ! | TAACAAAGTTGGAATAACTT+TGG | - | chr6_1:4752400-4752419 | Msa0870340:intron | 25.0% |
| ! | TAATATAAGTTAGCCAATCA+TGG | - | chr6_1:4752568-4752587 | Msa0870340:intron | 25.0% |
| ! | AAACTATTGTATGTTTATCG+AGG | - | chr6_1:4752620-4752639 | Msa0870340:intron | 25.0% |
| !!! | GGAAGACTTTGAAATAAATT+TGG | - | chr6_1:4752641-4752660 | Msa0870340:intron | 25.0% |
| !!! | CTATTTTTTTGGCCTTTTTT+AGG | - | chr6_1:4752712-4752731 | Msa0870340:intron | 25.0% |
| ! | ATTAAGAATAGCACATTCTA+AGG | - | chr6_1:4753056-4753075 | Msa0870340:intron | 25.0% |
| !!! | CTTTTTTAAAGAAGTGAGAA+AGG | + | chr6_1:4753296-4753315 | None:intergenic | 25.0% |
| !!! | ATTTGATAATGTCGATTTTG+TGG | - | chr6_1:4753514-4753533 | Msa0870340:CDS | 25.0% |
| ! | TCATTCTCATTCACAAATTT+AGG | - | chr6_1:4753629-4753648 | Msa0870340:CDS | 25.0% |
| ! | CATTCTCATTCACAAATTTA+GGG | - | chr6_1:4753630-4753649 | Msa0870340:CDS | 25.0% |
| ! | AATAAACAAGTGAGAATTTG+TGG | + | chr6_1:4752115-4752134 | None:intergenic | 25.0% |
| ! | CAATTTATTGAACAACTTCT+CGG | - | chr6_1:4752146-4752165 | Msa0870340:CDS | 25.0% |
| ! | TAACAAAGTTGGAATAACTT+TGG | - | chr6_1:4752400-4752419 | Msa0870340:intron | 25.0% |
| ! | TAATATAAGTTAGCCAATCA+TGG | - | chr6_1:4752568-4752587 | Msa0870340:intron | 25.0% |
| ! | AAACTATTGTATGTTTATCG+AGG | - | chr6_1:4752620-4752639 | Msa0870340:intron | 25.0% |
| !!! | GGAAGACTTTGAAATAAATT+TGG | - | chr6_1:4752641-4752660 | Msa0870340:intron | 25.0% |
| !!! | CTATTTTTTTGGCCTTTTTT+AGG | - | chr6_1:4752712-4752731 | Msa0870340:intron | 25.0% |
| ! | ATTAAGAATAGCACATTCTA+AGG | - | chr6_1:4753056-4753075 | Msa0870340:intron | 25.0% |
| !!! | CTTTTTTAAAGAAGTGAGAA+AGG | + | chr6_1:4753296-4753315 | None:intergenic | 25.0% |
| !!! | ATTTGATAATGTCGATTTTG+TGG | - | chr6_1:4753514-4753533 | Msa0870340:CDS | 25.0% |
| ! | TCATTCTCATTCACAAATTT+AGG | - | chr6_1:4753629-4753648 | Msa0870340:CDS | 25.0% |
| ! | CATTCTCATTCACAAATTTA+GGG | - | chr6_1:4753630-4753649 | Msa0870340:CDS | 25.0% |
| TCACAAAATTTCTCTTCAAG+CGG | - | chr6_1:4752044-4752063 | Msa0870340:CDS | 30.0% | |
| ! | GTTTCCTCTATTGCTTTAAA+TGG | - | chr6_1:4752081-4752100 | Msa0870340:CDS | 30.0% |
| ! | GTTACCATTTAAAGCAATAG+AGG | + | chr6_1:4752088-4752107 | None:intergenic | 30.0% |
| ! | TCTAAAACGTCTTAAGCTTA+AGG | + | chr6_1:4752175-4752194 | None:intergenic | 30.0% |
| TGAGTTACATGATTTGAGTA+TGG | - | chr6_1:4752360-4752379 | Msa0870340:intron | 30.0% | |
| ACATGATTTGAGTATGGTTA+TGG | - | chr6_1:4752366-4752385 | Msa0870340:intron | 30.0% | |
| AAAGTTGGAATAACTTTGGT+TGG | - | chr6_1:4752404-4752423 | Msa0870340:intron | 30.0% | |
| TGACACAATTACTTACTCTT+GGG | - | chr6_1:4752498-4752517 | Msa0870340:intron | 30.0% | |
| !! | GTTTAACTATCGATTTCCTT+AGG | - | chr6_1:4752667-4752686 | Msa0870340:intron | 30.0% |
| AGAATAAAAGATGCAACCTA+AGG | + | chr6_1:4752686-4752705 | None:intergenic | 30.0% | |
| TCAATTAAGGTTAATAAGCG+AGG | + | chr6_1:4752807-4752826 | None:intergenic | 30.0% | |
| !! | TTTTCAAGGTCTTGAAATCT+TGG | + | chr6_1:4753108-4753127 | None:intergenic | 30.0% |
| ACAACTCTCAAATATGTGAT+TGG | - | chr6_1:4753167-4753186 | Msa0870340:intron | 30.0% | |
| !!! | AATATCCTTGCTTTTAGCTT+CGG | - | chr6_1:4753363-4753382 | Msa0870340:CDS | 30.0% |
| ! | AATTTAGGGTGGAGTTTAAT+CGG | - | chr6_1:4753644-4753663 | Msa0870340:CDS | 30.0% |
| TCACAAAATTTCTCTTCAAG+CGG | - | chr6_1:4752044-4752063 | Msa0870340:CDS | 30.0% | |
| ! | GTTTCCTCTATTGCTTTAAA+TGG | - | chr6_1:4752081-4752100 | Msa0870340:CDS | 30.0% |
| ! | GTTACCATTTAAAGCAATAG+AGG | + | chr6_1:4752088-4752107 | None:intergenic | 30.0% |
| ! | TCTAAAACGTCTTAAGCTTA+AGG | + | chr6_1:4752175-4752194 | None:intergenic | 30.0% |
| TGAGTTACATGATTTGAGTA+TGG | - | chr6_1:4752360-4752379 | Msa0870340:intron | 30.0% | |
| ACATGATTTGAGTATGGTTA+TGG | - | chr6_1:4752366-4752385 | Msa0870340:intron | 30.0% | |
| AAAGTTGGAATAACTTTGGT+TGG | - | chr6_1:4752404-4752423 | Msa0870340:intron | 30.0% | |
| TGACACAATTACTTACTCTT+GGG | - | chr6_1:4752498-4752517 | Msa0870340:intron | 30.0% | |
| !! | GTTTAACTATCGATTTCCTT+AGG | - | chr6_1:4752667-4752686 | Msa0870340:intron | 30.0% |
| AGAATAAAAGATGCAACCTA+AGG | + | chr6_1:4752686-4752705 | None:intergenic | 30.0% | |
| TCAATTAAGGTTAATAAGCG+AGG | + | chr6_1:4752807-4752826 | None:intergenic | 30.0% | |
| !! | TTTTCAAGGTCTTGAAATCT+TGG | + | chr6_1:4753108-4753127 | None:intergenic | 30.0% |
| ACAACTCTCAAATATGTGAT+TGG | - | chr6_1:4753167-4753186 | Msa0870340:intron | 30.0% | |
| !!! | AATATCCTTGCTTTTAGCTT+CGG | - | chr6_1:4753363-4753382 | Msa0870340:CDS | 30.0% |
| ! | AATTTAGGGTGGAGTTTAAT+CGG | - | chr6_1:4753644-4753663 | Msa0870340:CDS | 30.0% |
| TGGTTCAAGGTAAATACAGA+TGG | - | chr6_1:4752234-4752253 | Msa0870340:intron | 35.0% | |
| AGGTAAATACAGATGGTTCA+TGG | - | chr6_1:4752241-4752260 | Msa0870340:intron | 35.0% | |
| GGTAAATACAGATGGTTCAT+GGG | - | chr6_1:4752242-4752261 | Msa0870340:intron | 35.0% | |
| GAAAGGTGATGCAATTATCA+TGG | + | chr6_1:4752295-4752314 | None:intergenic | 35.0% | |
| GATAATTGCATCACCTTTCT+CGG | - | chr6_1:4752296-4752315 | Msa0870340:intron | 35.0% | |
| ! | CAAGTAACTTAGGCGTTTTT+GGG | - | chr6_1:4752327-4752346 | Msa0870340:intron | 35.0% |
| CTGACACAATTACTTACTCT+TGG | - | chr6_1:4752497-4752516 | Msa0870340:intron | 35.0% | |
| GACACAATTACTTACTCTTG+GGG | - | chr6_1:4752499-4752518 | Msa0870340:intron | 35.0% | |
| ! | TGAGCTTAACTCAGTTGATA+TGG | - | chr6_1:4752759-4752778 | Msa0870340:intron | 35.0% |
| !! | ATTGTGCTACTTGACCTTAA+AGG | - | chr6_1:4752837-4752856 | Msa0870340:intron | 35.0% |
| !!! | TTTTTTTTGGGTCGCCTTTA+AGG | + | chr6_1:4752854-4752873 | None:intergenic | 35.0% |
| !!! | TTGATTTTGGCTTCATCAAG+AGG | - | chr6_1:4752966-4752985 | Msa0870340:intron | 35.0% |
| !!! | ATATCCTTGCTTTTAGCTTC+GGG | - | chr6_1:4753364-4753383 | Msa0870340:CDS | 35.0% |
| ! | TTTAGCTTCGGGTTTGTTTA+CGG | - | chr6_1:4753375-4753394 | Msa0870340:CDS | 35.0% |
| ! | AACATCCACTGAGTATTTTG+GGG | + | chr6_1:4753444-4753463 | None:intergenic | 35.0% |
| ! | CAACATCCACTGAGTATTTT+GGG | + | chr6_1:4753445-4753464 | None:intergenic | 35.0% |
| ! | TCAACATCCACTGAGTATTT+TGG | + | chr6_1:4753446-4753465 | None:intergenic | 35.0% |
| !!! | TGATAATGTCGATTTTGTGG+TGG | - | chr6_1:4753517-4753536 | Msa0870340:CDS | 35.0% |
| TCTCATTCACAAATTTAGGG+TGG | - | chr6_1:4753633-4753652 | Msa0870340:CDS | 35.0% | |
| TGGTTCAAGGTAAATACAGA+TGG | - | chr6_1:4752234-4752253 | Msa0870340:intron | 35.0% | |
| AGGTAAATACAGATGGTTCA+TGG | - | chr6_1:4752241-4752260 | Msa0870340:intron | 35.0% | |
| GGTAAATACAGATGGTTCAT+GGG | - | chr6_1:4752242-4752261 | Msa0870340:intron | 35.0% | |
| GAAAGGTGATGCAATTATCA+TGG | + | chr6_1:4752295-4752314 | None:intergenic | 35.0% | |
| GATAATTGCATCACCTTTCT+CGG | - | chr6_1:4752296-4752315 | Msa0870340:intron | 35.0% | |
| ! | CAAGTAACTTAGGCGTTTTT+GGG | - | chr6_1:4752327-4752346 | Msa0870340:intron | 35.0% |
| CTGACACAATTACTTACTCT+TGG | - | chr6_1:4752497-4752516 | Msa0870340:intron | 35.0% | |
| GACACAATTACTTACTCTTG+GGG | - | chr6_1:4752499-4752518 | Msa0870340:intron | 35.0% | |
| ! | TGAGCTTAACTCAGTTGATA+TGG | - | chr6_1:4752759-4752778 | Msa0870340:intron | 35.0% |
| !! | ATTGTGCTACTTGACCTTAA+AGG | - | chr6_1:4752837-4752856 | Msa0870340:intron | 35.0% |
| !!! | TTTTTTTTGGGTCGCCTTTA+AGG | + | chr6_1:4752854-4752873 | None:intergenic | 35.0% |
| !!! | TTGATTTTGGCTTCATCAAG+AGG | - | chr6_1:4752966-4752985 | Msa0870340:intron | 35.0% |
| !!! | ATATCCTTGCTTTTAGCTTC+GGG | - | chr6_1:4753364-4753383 | Msa0870340:CDS | 35.0% |
| ! | TTTAGCTTCGGGTTTGTTTA+CGG | - | chr6_1:4753375-4753394 | Msa0870340:CDS | 35.0% |
| ! | AACATCCACTGAGTATTTTG+GGG | + | chr6_1:4753444-4753463 | None:intergenic | 35.0% |
| ! | CAACATCCACTGAGTATTTT+GGG | + | chr6_1:4753445-4753464 | None:intergenic | 35.0% |
| ! | TCAACATCCACTGAGTATTT+TGG | + | chr6_1:4753446-4753465 | None:intergenic | 35.0% |
| !!! | TGATAATGTCGATTTTGTGG+TGG | - | chr6_1:4753517-4753536 | Msa0870340:CDS | 35.0% |
| TCTCATTCACAAATTTAGGG+TGG | - | chr6_1:4753633-4753652 | Msa0870340:CDS | 35.0% | |
| TTCGGACAGTGCATACAATT+TGG | - | chr6_1:4751992-4752011 | Msa0870340:CDS | 40.0% | |
| TGCATACAATTTGGATGACG+AGG | - | chr6_1:4752001-4752020 | Msa0870340:CDS | 40.0% | |
| !! | GAAGTATTGTCCCAATTGTC+TGG | - | chr6_1:4752193-4752212 | Msa0870340:CDS | 40.0% |
| ACCTTGAACCACGTAATCAT+TGG | + | chr6_1:4752225-4752244 | None:intergenic | 40.0% | |
| ! | GGTTGTTTCGCAAGTAACTT+AGG | - | chr6_1:4752317-4752336 | Msa0870340:intron | 40.0% |
| ! | GCAAGTAACTTAGGCGTTTT+TGG | - | chr6_1:4752326-4752345 | Msa0870340:intron | 40.0% |
| !!! | TAGGCGTTTTTGGGTGTTTT+AGG | - | chr6_1:4752336-4752355 | Msa0870340:intron | 40.0% |
| GAGTATGGTTATGGAGTTTG+CGG | - | chr6_1:4752375-4752394 | Msa0870340:intron | 40.0% | |
| AGTTTGCGGCATAACAAAGT+TGG | - | chr6_1:4752389-4752408 | Msa0870340:intron | 40.0% | |
| CAGCGATTCTGTAAACGATA+AGG | + | chr6_1:4752480-4752499 | None:intergenic | 40.0% | |
| AAACAACACCAGTAACAGAG+TGG | + | chr6_1:4752594-4752613 | None:intergenic | 40.0% | |
| !! | ACTCTGTTACTGGTGTTGTT+TGG | - | chr6_1:4752593-4752612 | Msa0870340:intron | 40.0% |
| !! | TGTTACTGGTGTTGTTTGGT+GGG | - | chr6_1:4752597-4752616 | Msa0870340:intron | 40.0% |
| CTTGAAATCTTGGAGGTGAA+TGG | + | chr6_1:4753098-4753117 | None:intergenic | 40.0% | |
| TCAAGGTCTTGAAATCTTGG+AGG | + | chr6_1:4753105-4753124 | None:intergenic | 40.0% | |
| ! | TTAGCTTCGGGTTTGTTTAC+GGG | - | chr6_1:4753376-4753395 | Msa0870340:CDS | 40.0% |
| !! | CACTGAGTATTTTGGGGATA+GGG | + | chr6_1:4753438-4753457 | None:intergenic | 40.0% |
| GATTGCTACATGCACTACAA+TGG | - | chr6_1:4753477-4753496 | Msa0870340:CDS | 40.0% | |
| CTACATGCACTACAATGGTT+GGG | - | chr6_1:4753482-4753501 | Msa0870340:CDS | 40.0% | |
| TTCGGACAGTGCATACAATT+TGG | - | chr6_1:4751992-4752011 | Msa0870340:CDS | 40.0% | |
| TGCATACAATTTGGATGACG+AGG | - | chr6_1:4752001-4752020 | Msa0870340:CDS | 40.0% | |
| !! | GAAGTATTGTCCCAATTGTC+TGG | - | chr6_1:4752193-4752212 | Msa0870340:CDS | 40.0% |
| ACCTTGAACCACGTAATCAT+TGG | + | chr6_1:4752225-4752244 | None:intergenic | 40.0% | |
| ! | GGTTGTTTCGCAAGTAACTT+AGG | - | chr6_1:4752317-4752336 | Msa0870340:intron | 40.0% |
| ! | GCAAGTAACTTAGGCGTTTT+TGG | - | chr6_1:4752326-4752345 | Msa0870340:intron | 40.0% |
| !!! | TAGGCGTTTTTGGGTGTTTT+AGG | - | chr6_1:4752336-4752355 | Msa0870340:intron | 40.0% |
| GAGTATGGTTATGGAGTTTG+CGG | - | chr6_1:4752375-4752394 | Msa0870340:intron | 40.0% | |
| AGTTTGCGGCATAACAAAGT+TGG | - | chr6_1:4752389-4752408 | Msa0870340:intron | 40.0% | |
| CAGCGATTCTGTAAACGATA+AGG | + | chr6_1:4752480-4752499 | None:intergenic | 40.0% | |
| AAACAACACCAGTAACAGAG+TGG | + | chr6_1:4752594-4752613 | None:intergenic | 40.0% | |
| !! | ACTCTGTTACTGGTGTTGTT+TGG | - | chr6_1:4752593-4752612 | Msa0870340:intron | 40.0% |
| !! | TGTTACTGGTGTTGTTTGGT+GGG | - | chr6_1:4752597-4752616 | Msa0870340:intron | 40.0% |
| CTTGAAATCTTGGAGGTGAA+TGG | + | chr6_1:4753098-4753117 | None:intergenic | 40.0% | |
| TCAAGGTCTTGAAATCTTGG+AGG | + | chr6_1:4753105-4753124 | None:intergenic | 40.0% | |
| ! | TTAGCTTCGGGTTTGTTTAC+GGG | - | chr6_1:4753376-4753395 | Msa0870340:CDS | 40.0% |
| !! | CACTGAGTATTTTGGGGATA+GGG | + | chr6_1:4753438-4753457 | None:intergenic | 40.0% |
| GATTGCTACATGCACTACAA+TGG | - | chr6_1:4753477-4753496 | Msa0870340:CDS | 40.0% | |
| CTACATGCACTACAATGGTT+GGG | - | chr6_1:4753482-4753501 | Msa0870340:CDS | 40.0% | |
| AATTGATGCATCCTCCTTCG+AGG | - | chr6_1:4751903-4751922 | Msa0870340:CDS | 45.0% | |
| ATTGATGCATCCTCCTTCGA+GGG | - | chr6_1:4751904-4751923 | Msa0870340:CDS | 45.0% | |
| CTTGCGAGCTACAATGAGTT+AGG | + | chr6_1:4751945-4751964 | None:intergenic | 45.0% | |
| AATTTCTCTTCAAGCGGCGA+AGG | - | chr6_1:4752050-4752069 | Msa0870340:CDS | 45.0% | |
| TTGGCGACATCCAGACAATT+GGG | + | chr6_1:4752206-4752225 | None:intergenic | 45.0% | |
| ATTGGCGACATCCAGACAAT+TGG | + | chr6_1:4752207-4752226 | None:intergenic | 45.0% | |
| GCCAATGATTACGTGGTTCA+AGG | - | chr6_1:4752221-4752240 | Msa0870340:intron | 45.0% | |
| ATGGGTATGCATGCTTCTTG+TGG | - | chr6_1:4752260-4752279 | Msa0870340:intron | 45.0% | |
| ACTTGCGAAACAACCGAGAA+AGG | + | chr6_1:4752312-4752331 | None:intergenic | 45.0% | |
| AGTAACAGAGTGGCCATGAT+TGG | + | chr6_1:4752584-4752603 | None:intergenic | 45.0% | |
| AATCATGGCCACTCTGTTAC+TGG | - | chr6_1:4752583-4752602 | Msa0870340:intron | 45.0% | |
| !! | CTGTTACTGGTGTTGTTTGG+TGG | - | chr6_1:4752596-4752615 | Msa0870340:intron | 45.0% |
| GGCTTCATCAAGAGGTGAAA+CGG | - | chr6_1:4752974-4752993 | Msa0870340:intron | 45.0% | |
| AAGAGGTGAAACGGATAGTG+TGG | - | chr6_1:4752983-4753002 | Msa0870340:intron | 45.0% | |
| AGAGGTGAAACGGATAGTGT+GGG | - | chr6_1:4752984-4753003 | Msa0870340:intron | 45.0% | |
| !! | GTGAATGGTGATGTTGGCTT+AGG | + | chr6_1:4753083-4753102 | None:intergenic | 45.0% |
| ! | TTGGAGGTGAATGGTGATGT+TGG | + | chr6_1:4753089-4753108 | None:intergenic | 45.0% |
| CAAACCCGAAGCTAAAAGCA+AGG | + | chr6_1:4753371-4753390 | None:intergenic | 45.0% | |
| GTTTGTTTACGGGATGATGC+TGG | - | chr6_1:4753386-4753405 | Msa0870340:CDS | 45.0% | |
| !! | CCACTGAGTATTTTGGGGAT+AGG | + | chr6_1:4753439-4753458 | None:intergenic | 45.0% |
| CCTATCCCCAAAATACTCAG+TGG | - | chr6_1:4753436-4753455 | Msa0870340:CDS | 45.0% | |
| GTAGTGCATGTAGCAATCCA+AGG | + | chr6_1:4753475-4753494 | None:intergenic | 45.0% | |
| GCTACATGCACTACAATGGT+TGG | - | chr6_1:4753481-4753500 | Msa0870340:CDS | 45.0% | |
| !!! | CGATTTTGTGGTGGACTCAA+AGG | - | chr6_1:4753526-4753545 | Msa0870340:CDS | 45.0% |
| TTAGGGTGGAGTTTAATCGG+AGG | - | chr6_1:4753647-4753666 | Msa0870340:CDS | 45.0% | |
| TAATCGGAGGCAAGCAAATG+TGG | - | chr6_1:4753660-4753679 | Msa0870340:CDS | 45.0% | |
| AATTGATGCATCCTCCTTCG+AGG | - | chr6_1:4751903-4751922 | Msa0870340:CDS | 45.0% | |
| ATTGATGCATCCTCCTTCGA+GGG | - | chr6_1:4751904-4751923 | Msa0870340:CDS | 45.0% | |
| CTTGCGAGCTACAATGAGTT+AGG | + | chr6_1:4751945-4751964 | None:intergenic | 45.0% | |
| AATTTCTCTTCAAGCGGCGA+AGG | - | chr6_1:4752050-4752069 | Msa0870340:CDS | 45.0% | |
| TTGGCGACATCCAGACAATT+GGG | + | chr6_1:4752206-4752225 | None:intergenic | 45.0% | |
| ATTGGCGACATCCAGACAAT+TGG | + | chr6_1:4752207-4752226 | None:intergenic | 45.0% | |
| GCCAATGATTACGTGGTTCA+AGG | - | chr6_1:4752221-4752240 | Msa0870340:intron | 45.0% | |
| ATGGGTATGCATGCTTCTTG+TGG | - | chr6_1:4752260-4752279 | Msa0870340:intron | 45.0% | |
| ACTTGCGAAACAACCGAGAA+AGG | + | chr6_1:4752312-4752331 | None:intergenic | 45.0% | |
| AGTAACAGAGTGGCCATGAT+TGG | + | chr6_1:4752584-4752603 | None:intergenic | 45.0% | |
| AATCATGGCCACTCTGTTAC+TGG | - | chr6_1:4752583-4752602 | Msa0870340:intron | 45.0% | |
| !! | CTGTTACTGGTGTTGTTTGG+TGG | - | chr6_1:4752596-4752615 | Msa0870340:intron | 45.0% |
| GGCTTCATCAAGAGGTGAAA+CGG | - | chr6_1:4752974-4752993 | Msa0870340:intron | 45.0% | |
| AAGAGGTGAAACGGATAGTG+TGG | - | chr6_1:4752983-4753002 | Msa0870340:intron | 45.0% | |
| AGAGGTGAAACGGATAGTGT+GGG | - | chr6_1:4752984-4753003 | Msa0870340:intron | 45.0% | |
| !! | GTGAATGGTGATGTTGGCTT+AGG | + | chr6_1:4753083-4753102 | None:intergenic | 45.0% |
| ! | TTGGAGGTGAATGGTGATGT+TGG | + | chr6_1:4753089-4753108 | None:intergenic | 45.0% |
| CAAACCCGAAGCTAAAAGCA+AGG | + | chr6_1:4753371-4753390 | None:intergenic | 45.0% | |
| GTTTGTTTACGGGATGATGC+TGG | - | chr6_1:4753386-4753405 | Msa0870340:CDS | 45.0% | |
| !! | CCACTGAGTATTTTGGGGAT+AGG | + | chr6_1:4753439-4753458 | None:intergenic | 45.0% |
| CCTATCCCCAAAATACTCAG+TGG | - | chr6_1:4753436-4753455 | Msa0870340:CDS | 45.0% | |
| GTAGTGCATGTAGCAATCCA+AGG | + | chr6_1:4753475-4753494 | None:intergenic | 45.0% | |
| GCTACATGCACTACAATGGT+TGG | - | chr6_1:4753481-4753500 | Msa0870340:CDS | 45.0% | |
| !!! | CGATTTTGTGGTGGACTCAA+AGG | - | chr6_1:4753526-4753545 | Msa0870340:CDS | 45.0% |
| TTAGGGTGGAGTTTAATCGG+AGG | - | chr6_1:4753647-4753666 | Msa0870340:CDS | 45.0% | |
| TAATCGGAGGCAAGCAAATG+TGG | - | chr6_1:4753660-4753679 | Msa0870340:CDS | 45.0% | |
| !!! | TATAGTTTTTTTTTTTTTTT+GGG | + | chr6_1:4752866-4752885 | None:intergenic | 5.0% |
| !!! | ATATAGTTTTTTTTTTTTTT+TGG | + | chr6_1:4752867-4752886 | None:intergenic | 5.0% |
| !!! | TATAGTTTTTTTTTTTTTTT+GGG | + | chr6_1:4752866-4752885 | None:intergenic | 5.0% |
| !!! | ATATAGTTTTTTTTTTTTTT+TGG | + | chr6_1:4752867-4752886 | None:intergenic | 5.0% |
| TTGATGCATCCTCCTTCGAG+GGG | - | chr6_1:4751905-4751924 | Msa0870340:CDS | 50.0% | |
| TCAAGCGGCGAAGGCAAAAA+TGG | - | chr6_1:4752059-4752078 | Msa0870340:CDS | 50.0% | |
| GGATGTCGCCAATGATTACG+TGG | - | chr6_1:4752214-4752233 | Msa0870340:intron | 50.0% | |
| ACAGTTTGGGCAAGCACGTA+GGG | + | chr6_1:4753413-4753432 | None:intergenic | 50.0% | |
| TGGGGATAGGGTCACAGTTT+GGG | + | chr6_1:4753426-4753445 | None:intergenic | 50.0% | |
| TTGGGGATAGGGTCACAGTT+TGG | + | chr6_1:4753427-4753446 | None:intergenic | 50.0% | |
| GTGGATGTTGACGAAGTCCT+TGG | - | chr6_1:4753455-4753474 | Msa0870340:CDS | 50.0% | |
| TGGCGGCTCATATTCTTGCT+GGG | - | chr6_1:4753680-4753699 | Msa0870340:CDS | 50.0% | |
| TTGATGCATCCTCCTTCGAG+GGG | - | chr6_1:4751905-4751924 | Msa0870340:CDS | 50.0% | |
| TCAAGCGGCGAAGGCAAAAA+TGG | - | chr6_1:4752059-4752078 | Msa0870340:CDS | 50.0% | |
| GGATGTCGCCAATGATTACG+TGG | - | chr6_1:4752214-4752233 | Msa0870340:intron | 50.0% | |
| ACAGTTTGGGCAAGCACGTA+GGG | + | chr6_1:4753413-4753432 | None:intergenic | 50.0% | |
| TGGGGATAGGGTCACAGTTT+GGG | + | chr6_1:4753426-4753445 | None:intergenic | 50.0% | |
| TTGGGGATAGGGTCACAGTT+TGG | + | chr6_1:4753427-4753446 | None:intergenic | 50.0% | |
| GTGGATGTTGACGAAGTCCT+TGG | - | chr6_1:4753455-4753474 | Msa0870340:CDS | 50.0% | |
| TGGCGGCTCATATTCTTGCT+GGG | - | chr6_1:4753680-4753699 | Msa0870340:CDS | 50.0% | |
| CAGTTTGGGCAAGCACGTAG+GGG | + | chr6_1:4753412-4753431 | None:intergenic | 55.0% | |
| CACAGTTTGGGCAAGCACGT+AGG | + | chr6_1:4753414-4753433 | None:intergenic | 55.0% | |
| TCGGAGGCAAGCAAATGTGG+CGG | - | chr6_1:4753663-4753682 | Msa0870340:CDS | 55.0% | |
| GTGGCGGCTCATATTCTTGC+TGG | - | chr6_1:4753679-4753698 | Msa0870340:CDS | 55.0% | |
| GGCGGCTCATATTCTTGCTG+GGG | - | chr6_1:4753681-4753700 | Msa0870340:CDS | 55.0% | |
| CAGTTTGGGCAAGCACGTAG+GGG | + | chr6_1:4753412-4753431 | None:intergenic | 55.0% | |
| CACAGTTTGGGCAAGCACGT+AGG | + | chr6_1:4753414-4753433 | None:intergenic | 55.0% | |
| TCGGAGGCAAGCAAATGTGG+CGG | - | chr6_1:4753663-4753682 | Msa0870340:CDS | 55.0% | |
| GTGGCGGCTCATATTCTTGC+TGG | - | chr6_1:4753679-4753698 | Msa0870340:CDS | 55.0% | |
| GGCGGCTCATATTCTTGCTG+GGG | - | chr6_1:4753681-4753700 | Msa0870340:CDS | 55.0% | |
| ATGCATCCTCCTTCGAGGGG+AGG | - | chr6_1:4751908-4751927 | Msa0870340:CDS | 60.0% | |
| ATCCTCCTTCGAGGGGAGGT+TGG | - | chr6_1:4751912-4751931 | Msa0870340:CDS | 60.0% | |
| CATTGTAGCTCGCAAGCGCG+AGG | - | chr6_1:4751949-4751968 | Msa0870340:CDS | 60.0% | |
| ATGCATCCTCCTTCGAGGGG+AGG | - | chr6_1:4751908-4751927 | Msa0870340:CDS | 60.0% | |
| ATCCTCCTTCGAGGGGAGGT+TGG | - | chr6_1:4751912-4751931 | Msa0870340:CDS | 60.0% | |
| CATTGTAGCTCGCAAGCGCG+AGG | - | chr6_1:4751949-4751968 | Msa0870340:CDS | 60.0% | |
| AGCCAACCTCCCCTCGAAGG+AGG | + | chr6_1:4751917-4751936 | None:intergenic | 65.0% | |
| GCAAGCCAACCTCCCCTCGA+AGG | + | chr6_1:4751920-4751939 | None:intergenic | 65.0% | |
| AGCCAACCTCCCCTCGAAGG+AGG | + | chr6_1:4751917-4751936 | None:intergenic | 65.0% | |
| GCAAGCCAACCTCCCCTCGA+AGG | + | chr6_1:4751920-4751939 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 4751892 | 4753715 | 4751892 | ID=Msa0870340;Name=Msa0870340 |
| chr6_1 | mRNA | 4751892 | 4753715 | 4751892 | ID=Msa0870340-mRNA-1;Parent=Msa0870340;Name=Msa0870340-mRNA-1;_AED=0.53;_eAED=0.54;_QI=0|0|0|0.5|1|1|2|0|257 |
| chr6_1 | exon | 4753278 | 4753715 | 4753278 | ID=Msa0870340-mRNA-1:exon:1503;Parent=Msa0870340-mRNA-1 |
| chr6_1 | exon | 4751892 | 4752227 | 4751892 | ID=Msa0870340-mRNA-1:exon:1502;Parent=Msa0870340-mRNA-1 |
| chr6_1 | CDS | 4753278 | 4753715 | 4753278 | ID=Msa0870340-mRNA-1:cds;Parent=Msa0870340-mRNA-1 |
| chr6_1 | CDS | 4751892 | 4752227 | 4751892 | ID=Msa0870340-mRNA-1:cds;Parent=Msa0870340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
