Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871480 | XP_013450931.1 | 100.000 | 286 | 0 | 0 | 1 | 286 | 1 | 286 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871480 | sp|Q6K550|HIRL2_ORYSJ | 87.279 | 283 | 36 | 0 | 1 | 283 | 1 | 283 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871480 | A0A072U6I0 | 100.000 | 286 | 0 | 0 | 1 | 286 | 1 | 286 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0871480 | Msa0904640 | 0.943958 | 4.690375e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871480 | MtrunA17_Chr6g0452801 | 100.000 | 286 | 0 | 0 | 1 | 286 | 1 | 286 | 0.0 | 588 |
| Msa0871480 | MtrunA17_Chr8g0362631 | 82.394 | 284 | 50 | 0 | 1 | 284 | 1 | 284 | 3.02e-179 | 495 |
| Msa0871480 | MtrunA17_Chr4g0060111 | 84.561 | 285 | 44 | 0 | 1 | 285 | 1 | 285 | 1.06e-174 | 483 |
| Msa0871480 | MtrunA17_Chr4g0060151 | 84.561 | 285 | 44 | 0 | 1 | 285 | 1 | 285 | 1.06e-174 | 483 |
| Msa0871480 | MtrunA17_Chr4g0060171 | 80.412 | 291 | 48 | 1 | 1 | 282 | 1 | 291 | 1.19e-172 | 478 |
| Msa0871480 | MtrunA17_Chr4g0060091 | 83.333 | 282 | 47 | 0 | 1 | 282 | 6 | 287 | 6.97e-171 | 474 |
| Msa0871480 | MtrunA17_Chr4g0060101 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 8.71e-169 | 468 |
| Msa0871480 | MtrunA17_Chr6g0476481 | 57.092 | 282 | 121 | 0 | 5 | 286 | 7 | 288 | 1.29e-114 | 332 |
| Msa0871480 | MtrunA17_Chr6g0476411 | 52.830 | 53 | 25 | 0 | 234 | 286 | 1 | 53 | 4.06e-17 | 73.9 |
| Msa0871480 | MtrunA17_Chr6g0476421 | 59.322 | 59 | 23 | 1 | 148 | 205 | 1 | 59 | 7.98e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871480 | AT5G62740.1 | 87.413 | 286 | 36 | 0 | 1 | 286 | 1 | 286 | 0.0 | 515 |
| Msa0871480 | AT1G69840.1 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| Msa0871480 | AT1G69840.2 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| Msa0871480 | AT1G69840.5 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| Msa0871480 | AT1G69840.7 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| Msa0871480 | AT1G69840.4 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| Msa0871480 | AT1G69840.6 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| Msa0871480 | AT1G69840.3 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| Msa0871480 | AT3G01290.1 | 75.439 | 285 | 70 | 0 | 1 | 285 | 1 | 285 | 5.31e-162 | 452 |
| Msa0871480 | AT5G51570.1 | 58.214 | 280 | 115 | 1 | 6 | 285 | 10 | 287 | 2.82e-121 | 349 |
Find 70 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAATTTGCTGATGTTT+TGG | 0.226210 | 6_1:+6374457 | Msa0871480:CDS |
| ACCAAGTCCGGACAGATATT+TGG | 0.265153 | 6_1:-6376806 | None:intergenic |
| TCTTTCGTGTATATATATAT+AGG | 0.274963 | 6_1:+6372924 | Msa0871480:five_prime_UTR |
| TGCAAACTTATAAGTGCTTT+TGG | 0.312631 | 6_1:+6377071 | Msa0871480:exon |
| GACATCTTTAGCAGTTGTTC+CGG | 0.325268 | 6_1:-6376899 | None:intergenic |
| CGCATTTCACATCAAGTTGC+TGG | 0.332292 | 6_1:-6374547 | None:intergenic |
| CATTGTCTGCCTTGGTGTCT+TGG | 0.335085 | 6_1:+6374491 | Msa0871480:CDS |
| GGATGCACCGATTTCCTTCA+TGG | 0.358553 | 6_1:-6376956 | None:intergenic |
| TTCTGCTTCAGCCTTCTCAT+TGG | 0.381980 | 6_1:-6376743 | None:intergenic |
| GGGACAACCCACCAGCTATC+TGG | 0.395578 | 6_1:-6374517 | None:intergenic |
| ACATCTTTAGCAGTTGTTCC+GGG | 0.418421 | 6_1:-6376898 | None:intergenic |
| ATTAGAGATGGTCTTCTTCA+AGG | 0.428122 | 6_1:+6377042 | Msa0871480:CDS |
| GGTGTTGGTGAGCCTATAAA+AGG | 0.433567 | 6_1:-6375236 | None:intergenic |
| TCCAAATATCTGTCCGGACT+TGG | 0.435262 | 6_1:+6376805 | Msa0871480:CDS |
| TTCATATATCAAAGGTAGAA+AGG | 0.435339 | 6_1:+6372885 | Msa0871480:five_prime_UTR |
| CAATATCAACAATGAGAGTC+TGG | 0.437796 | 6_1:-6375772 | None:intergenic |
| CTGGATGCCATTGTCTGCCT+TGG | 0.439595 | 6_1:+6374483 | Msa0871480:CDS |
| TCCATTGCAGGATTGAAAGA+TGG | 0.448577 | 6_1:+6374376 | Msa0871480:intron |
| TTTGACACCATGAAGGAAAT+CGG | 0.479073 | 6_1:+6376949 | Msa0871480:CDS |
| TACACGAAAGAAGTAAGTAT+TGG | 0.483563 | 6_1:-6372912 | None:intergenic |
| TCATATATCAAAGGTAGAAA+GGG | 0.491422 | 6_1:+6372886 | Msa0871480:five_prime_UTR |
| GTGTTCATTCCACATGGTCC+TGG | 0.494595 | 6_1:+6376994 | Msa0871480:CDS |
| AAGGGCAAGTGTGCCGAAGT+TGG | 0.497828 | 6_1:+6375545 | Msa0871480:CDS |
| CCATTGCAGGATTGAAAGAT+GGG | 0.502650 | 6_1:+6374377 | Msa0871480:intron |
| AAGTGTGCCGAAGTTGGAAT+TGG | 0.506197 | 6_1:+6375551 | Msa0871480:CDS |
| GTTGCTATCAAAGAGCACTT+TGG | 0.506589 | 6_1:+6374437 | Msa0871480:CDS |
| CTTGGTTACCAGATAGCTGG+TGG | 0.514589 | 6_1:+6374509 | Msa0871480:CDS |
| GTGCTCTTTGATAGCAACAT+TGG | 0.516952 | 6_1:-6374432 | None:intergenic |
| TTGGATCTGTTCCCTGGTGT+TGG | 0.519923 | 6_1:-6375251 | None:intergenic |
| TGTCTTGGTTACCAGATAGC+TGG | 0.525688 | 6_1:+6374506 | Msa0871480:CDS |
| GCTCTCTTGACATTAACATC+AGG | 0.526243 | 6_1:-6375797 | None:intergenic |
| TTTATAGGCTCACCAACACC+AGG | 0.526558 | 6_1:+6375239 | Msa0871480:CDS |
| CAAGGCAGACAATGGCATCC+AGG | 0.531320 | 6_1:-6374482 | None:intergenic |
| TATCAATAGCTGCAAGAATG+AGG | 0.535939 | 6_1:+6376713 | Msa0871480:intron |
| CAACGTCAAGCTATTGTTGA+CGG | 0.536520 | 6_1:+6376838 | Msa0871480:CDS |
| GCAATGAACGAGATCAATGC+AGG | 0.547779 | 6_1:+6375818 | Msa0871480:CDS |
| TTGACGAGCTATACCAAGTC+CGG | 0.553142 | 6_1:-6376818 | None:intergenic |
| GCATTCTCAGAGAATGTCCC+CGG | 0.553984 | 6_1:+6376880 | Msa0871480:CDS |
| TGAAAGATGGGTCAAGCACT+AGG | 0.554200 | 6_1:+6374389 | Msa0871480:exon |
| GCAGAGTCCAAATATCTGTC+CGG | 0.557286 | 6_1:+6376799 | Msa0871480:CDS |
| CATTGCAAAGGCTGTTGAAG+AGG | 0.557935 | 6_1:+6375599 | Msa0871480:CDS |
| AATAGCTGCAAGAATGAGGT+TGG | 0.565001 | 6_1:+6376717 | Msa0871480:intron |
| AAAATAGATTCATATATCAA+AGG | 0.576901 | 6_1:+6372877 | Msa0871480:five_prime_UTR |
| TTAATTAATTCACAAGTTGG+TGG | 0.578196 | 6_1:-6372963 | None:intergenic |
| AACAACTGCTAAAGATGTCA+TGG | 0.578481 | 6_1:+6376903 | Msa0871480:CDS |
| TTGCAGATCAAGAAAGCTGA+AGG | 0.578517 | 6_1:+6376772 | Msa0871480:CDS |
| GCAATGTCTCTGACAGCACC+AGG | 0.581198 | 6_1:-6377012 | None:intergenic |
| ATATGATTGGATCTGTTCCC+TGG | 0.592231 | 6_1:-6375257 | None:intergenic |
| CATCTTTAGCAGTTGTTCCG+GGG | 0.592739 | 6_1:-6376897 | None:intergenic |
| ACAGCATCCAATTCCAACTT+CGG | 0.595522 | 6_1:-6375558 | None:intergenic |
| TCAATACTTTGACACCATGA+AGG | 0.595992 | 6_1:+6376942 | Msa0871480:CDS |
| TCATCTGTGTTCATTCCACA+TGG | 0.597536 | 6_1:+6376988 | Msa0871480:CDS |
| TCTCTCTCGCTACAACTGAA+AGG | 0.598580 | 6_1:+6373035 | Msa0871480:five_prime_UTR |
| TGTTGAAGAGGAGCTTGAGA+AGG | 0.599510 | 6_1:+6375611 | Msa0871480:CDS |
| AGATGTCATGGACATGGTGT+TGG | 0.600992 | 6_1:+6376915 | Msa0871480:CDS |
| CAAGACACCAAGGCAGACAA+TGG | 0.612647 | 6_1:-6374490 | None:intergenic |
| ATTGCTGTGCAGATTAGAGA+TGG | 0.623952 | 6_1:+6377030 | Msa0871480:CDS |
| GGATAATGTCTTCGTGAATG+TGG | 0.632556 | 6_1:+6375168 | Msa0871480:intron |
| ATCAAGTTGCTGGACACGAA+GGG | 0.633857 | 6_1:-6374537 | None:intergenic |
| GAGGTTGGCTGCCAATGAGA+AGG | 0.636508 | 6_1:+6376732 | Msa0871480:CDS |
| GAAATGCGAGACGAAAACTA+AGG | 0.642256 | 6_1:+6374562 | Msa0871480:CDS |
| TTGGTTACCAGATAGCTGGT+GGG | 0.648910 | 6_1:+6374510 | Msa0871480:CDS |
| GCAGAAGAATGACATTGCAA+AGG | 0.650700 | 6_1:+6375587 | Msa0871480:CDS |
| CATCAAGTTGCTGGACACGA+AGG | 0.661848 | 6_1:-6374538 | None:intergenic |
| ATCTGGTAACCAAGACACCA+AGG | 0.665749 | 6_1:-6374500 | None:intergenic |
| ATCTGTACAATACCGCGCTG+TGG | 0.666853 | 6_1:+6375195 | Msa0871480:CDS |
| CTGACAGCACCAGGACCATG+TGG | 0.682921 | 6_1:-6377003 | None:intergenic |
| TGCTAAAGATGTCATGGACA+TGG | 0.694161 | 6_1:+6376909 | Msa0871480:CDS |
| TTATAGGCTCACCAACACCA+GGG | 0.702114 | 6_1:+6375240 | Msa0871480:CDS |
| ACGCTTTGTCAGCCACAGCG+CGG | 0.769344 | 6_1:-6375207 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAGTAAAATTTTAATTTA+GGG | + | chr6_1:6373791-6373810 | Msa0871480:intron | 10.0% |
| !! | AAAATAGATTCATATATCAA+AGG | + | chr6_1:6372877-6372896 | Msa0871480:five_prime_UTR | 15.0% |
| !!! | ATTTTAATTAATTCACAAGT+TGG | - | chr6_1:6372969-6372988 | None:intergenic | 15.0% |
| !!! | ATTCAGTGTTTTATATTAAA+AGG | + | chr6_1:6373131-6373150 | Msa0871480:intron | 15.0% |
| !!! | TTCAGTGTTTTATATTAAAA+GGG | + | chr6_1:6373132-6373151 | Msa0871480:intron | 15.0% |
| !!! | TTAAGGATTTATTGTTTTTT+TGG | + | chr6_1:6373339-6373358 | Msa0871480:intron | 15.0% |
| !!! | GGAAAGTAAAATTTTAATTT+AGG | + | chr6_1:6373790-6373809 | Msa0871480:intron | 15.0% |
| !! | AATAAATGCAAAATATCATA+AGG | - | chr6_1:6375516-6375535 | None:intergenic | 15.0% |
| !! | GCAAAAAAACAAAATAATTT+AGG | + | chr6_1:6376168-6376187 | Msa0871480:intron | 15.0% |
| !! | AATATAAGTATAAAAATGCA+AGG | - | chr6_1:6377148-6377167 | None:intergenic | 15.0% |
| !!! | TTTTCATGAATATTTGATTT+TGG | + | chr6_1:6377244-6377263 | Msa0871480:three_prime_UTR | 15.0% |
| !!! | TACACTTTCTTTTATAAAAT+AGG | - | chr6_1:6377271-6377290 | None:intergenic | 15.0% |
| !! | TCTTTCGTGTATATATATAT+AGG | + | chr6_1:6372924-6372943 | Msa0871480:five_prime_UTR | 20.0% |
| !! | CTTTCGTGTATATATATATA+GGG | + | chr6_1:6372925-6372944 | Msa0871480:five_prime_UTR | 20.0% |
| !!! | TCAGTGTTTTATATTAAAAG+GGG | + | chr6_1:6373133-6373152 | Msa0871480:intron | 20.0% |
| !!! | ATTGTTTCTTTTTGTTTTTC+TGG | + | chr6_1:6373196-6373215 | Msa0871480:intron | 20.0% |
| !!! | TTTTTATGTTGTTTTGTTTG+TGG | + | chr6_1:6373369-6373388 | Msa0871480:intron | 20.0% |
| !!! | GTATTTTCTCAAATTATTAC+CGG | - | chr6_1:6373555-6373574 | None:intergenic | 20.0% |
| !! | AGTTATCTTAGATAACATAT+GGG | - | chr6_1:6373923-6373942 | None:intergenic | 20.0% |
| !! | AAGTTATCTTAGATAACATA+TGG | - | chr6_1:6373924-6373943 | None:intergenic | 20.0% |
| !! | CCAGTAATATAAAGATATAT+AGG | - | chr6_1:6374247-6374266 | None:intergenic | 20.0% |
| !! | CCTATATATCTTTATATTAC+TGG | + | chr6_1:6374244-6374263 | Msa0871480:intron | 20.0% |
| !!! | ATTGATAATATATTTGCTAC+CGG | + | chr6_1:6374830-6374849 | Msa0871480:intron | 20.0% |
| !!! | GTCTTGATTACTTTTATTTT+CGG | + | chr6_1:6374942-6374961 | Msa0871480:intron | 20.0% |
| !! | TCTTAATCTTGAAGTAAAAA+CGG | - | chr6_1:6375007-6375026 | None:intergenic | 20.0% |
| !! | TCTTAATCTTGAAGTAAAAA+TGG | - | chr6_1:6375007-6375026 | None:intergenic | 20.0% |
| !!! | TGCATTTATTTTCAGTTATA+AGG | + | chr6_1:6375526-6375545 | Msa0871480:intron | 20.0% |
| !!! | GCATTTATTTTCAGTTATAA+GGG | + | chr6_1:6375527-6375546 | Msa0871480:intron | 20.0% |
| !! | GAGTTTATAAAAACAACTTA+TGG | + | chr6_1:6376401-6376420 | Msa0871480:intron | 20.0% |
| !!! | TTCTGATCATTTTTTTACAA+CGG | + | chr6_1:6376687-6376706 | Msa0871480:intron | 20.0% |
| ! | TTCATATATCAAAGGTAGAA+AGG | + | chr6_1:6372885-6372904 | Msa0871480:five_prime_UTR | 25.0% |
| ! | TCATATATCAAAGGTAGAAA+GGG | + | chr6_1:6372886-6372905 | Msa0871480:five_prime_UTR | 25.0% |
| !! | TTAATTAATTCACAAGTTGG+TGG | - | chr6_1:6372966-6372985 | None:intergenic | 25.0% |
| !!! | TGATGTTTTTTGTTTGTTTG+TGG | + | chr6_1:6373264-6373283 | Msa0871480:intron | 25.0% |
| !!! | AAGGTTTGATTTGTTATTCA+TGG | + | chr6_1:6373300-6373319 | Msa0871480:intron | 25.0% |
| !!! | ATTCATGTTTTTCTGTTTCT+TGG | + | chr6_1:6373411-6373430 | Msa0871480:intron | 25.0% |
| ! | GAGAAAATACAAGTATTTGA+AGG | + | chr6_1:6373565-6373584 | Msa0871480:intron | 25.0% |
| !!! | ATTTTAATTTAGGGTGTGTT+TGG | + | chr6_1:6373800-6373819 | Msa0871480:intron | 25.0% |
| ! | AAGATCAAAAGTTATATGAC+AGG | - | chr6_1:6374091-6374110 | None:intergenic | 25.0% |
| !! | CATCAATCTGTTTAAACTTT+TGG | - | chr6_1:6374303-6374322 | None:intergenic | 25.0% |
| ! | CAAAAGTTTAAACAGATTGA+TGG | + | chr6_1:6374301-6374320 | Msa0871480:intron | 25.0% |
| ! | ATTTCAACGATCAAAATAAC+CGG | - | chr6_1:6374852-6374871 | None:intergenic | 25.0% |
| ! | ATTAAGTTCTACGTAATTTG+AGG | + | chr6_1:6374874-6374893 | Msa0871480:intron | 25.0% |
| !!! | ATCCAATCATATGTTTTTGA+TGG | + | chr6_1:6375268-6375287 | Msa0871480:CDS | 25.0% |
| ! | TACCATCAAAAACATATGAT+TGG | - | chr6_1:6375273-6375292 | None:intergenic | 25.0% |
| ! | AATTAAGTAACAGAATGAAG+CGG | - | chr6_1:6375311-6375330 | None:intergenic | 25.0% |
| ! | ATGAAATCATAGAAAATGTC+AGG | + | chr6_1:6375336-6375355 | Msa0871480:intron | 25.0% |
| ! | TGAAATCATAGAAAATGTCA+GGG | + | chr6_1:6375337-6375356 | Msa0871480:intron | 25.0% |
| ! | AGCAACTAAATTATCAATCA+TGG | - | chr6_1:6375480-6375499 | None:intergenic | 25.0% |
| !! | TAATTCAACCGTAATGTTTT+AGG | + | chr6_1:6375721-6375740 | Msa0871480:intron | 25.0% |
| !! | ATAAAACATTTTGCTTAGTG+TGG | + | chr6_1:6375865-6375884 | Msa0871480:intron | 25.0% |
| ! | TTGTACTAAATAGTGTATCA+CGG | - | chr6_1:6375960-6375979 | None:intergenic | 25.0% |
| ! | TATAACATCTAAACACATGT+AGG | - | chr6_1:6376240-6376259 | None:intergenic | 25.0% |
| ! | CAACATAACATAAAAACTCT+AGG | + | chr6_1:6376290-6376309 | Msa0871480:intron | 25.0% |
| ! | ATAAGCTGAAAATAGCAAAT+GGG | - | chr6_1:6376431-6376450 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGCAAA+TGG | - | chr6_1:6376432-6376451 | None:intergenic | 25.0% |
| ! | CACACAAAAAATGACTAAAA+AGG | - | chr6_1:6376633-6376652 | None:intergenic | 25.0% |
| ! | ATTTGAATGACCATAGTAAT+TGG | + | chr6_1:6376657-6376676 | Msa0871480:intron | 25.0% |
| ! | TTTGAATGACCATAGTAATT+GGG | + | chr6_1:6376658-6376677 | Msa0871480:intron | 25.0% |
| TACACGAAAGAAGTAAGTAT+TGG | - | chr6_1:6372915-6372934 | None:intergenic | 30.0% | |
| !!! | GGTTGTTTTGTTTTTGTGTT+TGG | + | chr6_1:6373154-6373173 | Msa0871480:intron | 30.0% |
| !!! | TTGTTTTTGTGTTTGGTTTC+TGG | + | chr6_1:6373161-6373180 | Msa0871480:intron | 30.0% |
| !! | TGTTTTTGTGTTTGGTTTCT+GGG | + | chr6_1:6373162-6373181 | Msa0871480:intron | 30.0% |
| !! | TTTGTTTGTTTGTGGTTTTG+TGG | + | chr6_1:6373272-6373291 | Msa0871480:intron | 30.0% |
| ! | ATTCATGGTTTTCTGTTTCA+TGG | + | chr6_1:6373315-6373334 | Msa0871480:intron | 30.0% |
| ! | GTTTTCTGTTTCATGGTTTA+AGG | + | chr6_1:6373322-6373341 | Msa0871480:intron | 30.0% |
| !!! | TTGTTTTGTTTGTGGTTTTG+TGG | + | chr6_1:6373377-6373396 | Msa0871480:intron | 30.0% |
| !! | TTGATTTGTTTCCCTTTACT+TGG | + | chr6_1:6373739-6373758 | Msa0871480:intron | 30.0% |
| TAGTTTCTTCTCCAAGTAAA+GGG | - | chr6_1:6373753-6373772 | None:intergenic | 30.0% | |
| ATAGTTTCTTCTCCAAGTAA+AGG | - | chr6_1:6373754-6373773 | None:intergenic | 30.0% | |
| TACTTGGAGAAGAAACTATA+AGG | + | chr6_1:6373755-6373774 | Msa0871480:intron | 30.0% | |
| AACTATAAGGTTGGATACAT+TGG | + | chr6_1:6373768-6373787 | Msa0871480:intron | 30.0% | |
| ACTATAAGGTTGGATACATT+GGG | + | chr6_1:6373769-6373788 | Msa0871480:intron | 30.0% | |
| ACCTAACATACAAGTACATA+CGG | - | chr6_1:6374008-6374027 | None:intergenic | 30.0% | |
| ! | TCAAGTACAAAAGTCTTGTA+TGG | - | chr6_1:6374038-6374057 | None:intergenic | 30.0% |
| TCAAAAGTTATATGACAGGA+AGG | - | chr6_1:6374087-6374106 | None:intergenic | 30.0% | |
| !!! | TGGAAAATTTGCTGATGTTT+TGG | + | chr6_1:6374457-6374476 | Msa0871480:CDS | 30.0% |
| ! | AAAGTAACAGTTTTCCAACA+TGG | + | chr6_1:6374752-6374771 | Msa0871480:intron | 30.0% |
| !!! | GGTTATTTTGATCGTTGAAA+TGG | + | chr6_1:6374851-6374870 | Msa0871480:intron | 30.0% |
| !! | CGTAATTTGAGGTTGAATTT+TGG | + | chr6_1:6374885-6374904 | Msa0871480:intron | 30.0% |
| AAGACAGAAGTTAAAGATGT+AGG | - | chr6_1:6374927-6374946 | None:intergenic | 30.0% | |
| ! | CTGTTGTGAACTTGTTTATT+AGG | + | chr6_1:6375147-6375166 | Msa0871480:intron | 30.0% |
| ATAACGATGTAACACATCAT+CGG | - | chr6_1:6375385-6375404 | None:intergenic | 30.0% | |
| TTAGTGTAAAGATGTTCACA+CGG | - | chr6_1:6375441-6375460 | None:intergenic | 30.0% | |
| GTTGAATTAACGAGTTAATG+AGG | - | chr6_1:6375710-6375729 | None:intergenic | 30.0% | |
| !! | TACAAAGTGTTGTCAAATAG+CGG | + | chr6_1:6375975-6375994 | Msa0871480:intron | 30.0% |
| ! | TTGTGGAAAATAGTGTTGTT+AGG | - | chr6_1:6376029-6376048 | None:intergenic | 30.0% |
| !! | AAACAAAGTGTTGTCAATTG+CGG | - | chr6_1:6376053-6376072 | None:intergenic | 30.0% |
| !!! | ACAACACTTTGTTTTTGTGT+TGG | + | chr6_1:6376059-6376078 | Msa0871480:intron | 30.0% |
| ! | AAGCATGTATTTCAGTTTTC+AGG | + | chr6_1:6376146-6376165 | Msa0871480:intron | 30.0% |
| GCTTATTTGATCTTATCTAC+TGG | + | chr6_1:6376348-6376367 | Msa0871480:intron | 30.0% | |
| TATTTGATCTTATCTACTGG+TGG | + | chr6_1:6376351-6376370 | Msa0871480:intron | 30.0% | |
| !! | AAGTTGTTTTCATAAGCTTC+TGG | - | chr6_1:6376467-6376486 | None:intergenic | 30.0% |
| ACAACTTAATCAAGTGCTTA+TGG | - | chr6_1:6376578-6376597 | None:intergenic | 30.0% | |
| TTGAATGACCATAGTAATTG+GGG | + | chr6_1:6376659-6376678 | Msa0871480:intron | 30.0% | |
| ! | TGCAAACTTATAAGTGCTTT+TGG | + | chr6_1:6377071-6377090 | Msa0871480:exon | 30.0% |
| !!! | TTGTGGTTTTGTGGCTATTA+AGG | + | chr6_1:6373281-6373300 | Msa0871480:intron | 35.0% |
| AACCTAACACTTCAGATTGA+AGG | - | chr6_1:6373625-6373644 | None:intergenic | 35.0% | |
| TGGAGAAGAAACTATAAGGT+TGG | + | chr6_1:6373759-6373778 | Msa0871480:intron | 35.0% | |
| GAGCTTACAGAAACAGATTA+TGG | + | chr6_1:6373869-6373888 | Msa0871480:intron | 35.0% | |
| ACCGTATGTACTTGTATGTT+AGG | + | chr6_1:6374004-6374023 | Msa0871480:intron | 35.0% | |
| ACTGGTATTGTGTACTATCT+CGG | + | chr6_1:6374262-6374281 | Msa0871480:intron | 35.0% | |
| ATAGCATCATGAAGCAGAAT+AGG | - | chr6_1:6374614-6374633 | None:intergenic | 35.0% | |
| !! | CGGTTTGTTAGAAGTGAAAA+AGG | - | chr6_1:6374987-6375006 | None:intergenic | 35.0% |
| TTAAACCTGGGCTTACTTAA+CGG | + | chr6_1:6375075-6375094 | Msa0871480:intron | 35.0% | |
| CAGGTCATAATCAAATGCAT+AGG | - | chr6_1:6375113-6375132 | None:intergenic | 35.0% | |
| ATTTGATTATGACCTGTTGC+TGG | + | chr6_1:6375117-6375136 | Msa0871480:intron | 35.0% | |
| TAGTGTAAAGATGTTCACAC+GGG | - | chr6_1:6375440-6375459 | None:intergenic | 35.0% | |
| TGACATCGCCTAAAACATTA+CGG | - | chr6_1:6375732-6375751 | None:intergenic | 35.0% | |
| ! | TTTTAGGCGATGTCAATGTA+CGG | + | chr6_1:6375737-6375756 | Msa0871480:intron | 35.0% |
| CAATATCAACAATGAGAGTC+TGG | - | chr6_1:6375775-6375794 | None:intergenic | 35.0% | |
| !!! | GTTTTTGTGTTGGTCTTGAA+TGG | + | chr6_1:6376069-6376088 | Msa0871480:intron | 35.0% |
| CAGTGTTTCAATTTCTGTCA+TGG | + | chr6_1:6376196-6376215 | Msa0871480:intron | 35.0% | |
| GGATCTTTCTTATCACTTCT+AGG | + | chr6_1:6376311-6376330 | Msa0871480:intron | 35.0% | |
| ! | AAACACTTGTGAGACTGTTT+TGG | + | chr6_1:6376377-6376396 | Msa0871480:intron | 35.0% |
| GAATACAACCCCAATTACTA+TGG | - | chr6_1:6376670-6376689 | None:intergenic | 35.0% | |
| TATCAATAGCTGCAAGAATG+AGG | + | chr6_1:6376713-6376732 | Msa0871480:intron | 35.0% | |
| AACAACTGCTAAAGATGTCA+TGG | + | chr6_1:6376903-6376922 | Msa0871480:CDS | 35.0% | |
| TCAATACTTTGACACCATGA+AGG | + | chr6_1:6376942-6376961 | Msa0871480:CDS | 35.0% | |
| TTTGACACCATGAAGGAAAT+CGG | + | chr6_1:6376949-6376968 | Msa0871480:CDS | 35.0% | |
| ! | GAACACAGATGAAGATTTTG+AGG | - | chr6_1:6376980-6376999 | None:intergenic | 35.0% |
| ATTAGAGATGGTCTTCTTCA+AGG | + | chr6_1:6377042-6377061 | Msa0871480:CDS | 35.0% | |
| ! | CACCTTCAATCTGAAGTGTT+AGG | + | chr6_1:6373620-6373639 | Msa0871480:intron | 40.0% |
| GAGTTGTGATATTCCATTGC+AGG | + | chr6_1:6374364-6374383 | Msa0871480:intron | 40.0% | |
| TCCATTGCAGGATTGAAAGA+TGG | + | chr6_1:6374376-6374395 | Msa0871480:intron | 40.0% | |
| CCATTGCAGGATTGAAAGAT+GGG | + | chr6_1:6374377-6374396 | Msa0871480:intron | 40.0% | |
| ! | GTGCTCTTTGATAGCAACAT+TGG | - | chr6_1:6374435-6374454 | None:intergenic | 40.0% |
| !! | GTTGCTATCAAAGAGCACTT+TGG | + | chr6_1:6374437-6374456 | Msa0871480:CDS | 40.0% |
| !!! | TTTGCTGATGTTTTGGAACC+TGG | + | chr6_1:6374464-6374483 | Msa0871480:CDS | 40.0% |
| GAAATGCGAGACGAAAACTA+AGG | + | chr6_1:6374562-6374581 | Msa0871480:CDS | 40.0% | |
| GGCGGAAAAAATAGGAAGAA+TGG | - | chr6_1:6374593-6374612 | None:intergenic | 40.0% | |
| GCAGAATAGGCGGAAAAAAT+AGG | - | chr6_1:6374601-6374620 | None:intergenic | 40.0% | |
| ! | GACACATTGATAGTCCATGT+TGG | - | chr6_1:6374769-6374788 | None:intergenic | 40.0% |
| ! | AGAAAGCATGCTGTTAAACC+TGG | + | chr6_1:6375062-6375081 | Msa0871480:intron | 40.0% |
| ! | GAAAGCATGCTGTTAAACCT+GGG | + | chr6_1:6375063-6375082 | Msa0871480:intron | 40.0% |
| TAAACCTGGGCTTACTTAAC+GGG | + | chr6_1:6375076-6375095 | Msa0871480:intron | 40.0% | |
| GGATAATGTCTTCGTGAATG+TGG | + | chr6_1:6375168-6375187 | Msa0871480:intron | 40.0% | |
| ! | AAGCGTCTGATGCCTTTTAT+AGG | + | chr6_1:6375224-6375243 | Msa0871480:CDS | 40.0% |
| ATATGATTGGATCTGTTCCC+TGG | - | chr6_1:6375260-6375279 | None:intergenic | 40.0% | |
| ACAGCATCCAATTCCAACTT+CGG | - | chr6_1:6375561-6375580 | None:intergenic | 40.0% | |
| GCAGAAGAATGACATTGCAA+AGG | + | chr6_1:6375587-6375606 | Msa0871480:CDS | 40.0% | |
| GCTCTCTTGACATTAACATC+AGG | - | chr6_1:6375800-6375819 | None:intergenic | 40.0% | |
| TGGTCAAATAGCAGCTATAG+TGG | + | chr6_1:6375885-6375904 | Msa0871480:intron | 40.0% | |
| ! | TTGTCAAATAGCGGCTTTTG+TGG | + | chr6_1:6375984-6376003 | Msa0871480:intron | 40.0% |
| ! | ATAAGCTTCTGGAGAGCTTA+TGG | - | chr6_1:6376456-6376475 | None:intergenic | 40.0% |
| AATAGCTGCAAGAATGAGGT+TGG | + | chr6_1:6376717-6376736 | Msa0871480:intron | 40.0% | |
| TTGCAGATCAAGAAAGCTGA+AGG | + | chr6_1:6376772-6376791 | Msa0871480:CDS | 40.0% | |
| CAACGTCAAGCTATTGTTGA+CGG | + | chr6_1:6376838-6376857 | Msa0871480:CDS | 40.0% | |
| ACATCTTTAGCAGTTGTTCC+GGG | - | chr6_1:6376901-6376920 | None:intergenic | 40.0% | |
| GACATCTTTAGCAGTTGTTC+CGG | - | chr6_1:6376902-6376921 | None:intergenic | 40.0% | |
| TGCTAAAGATGTCATGGACA+TGG | + | chr6_1:6376909-6376928 | Msa0871480:CDS | 40.0% | |
| TCATCTGTGTTCATTCCACA+TGG | + | chr6_1:6376988-6377007 | Msa0871480:CDS | 40.0% | |
| ATTGCTGTGCAGATTAGAGA+TGG | + | chr6_1:6377030-6377049 | Msa0871480:CDS | 40.0% | |
| TCTCTCTCGCTACAACTGAA+AGG | + | chr6_1:6373035-6373054 | Msa0871480:five_prime_UTR | 45.0% | |
| TGTTAGTGTCGTGTCGAGTT+TGG | - | chr6_1:6373530-6373549 | None:intergenic | 45.0% | |
| TTGAAGGTAACCACTTGCGT+CGG | + | chr6_1:6373581-6373600 | Msa0871480:intron | 45.0% | |
| GTGTTAAAAACCGACGCAAG+TGG | - | chr6_1:6373594-6373613 | None:intergenic | 45.0% | |
| !!! | CTTGCGTCGGTTTTTAACAC+CGG | + | chr6_1:6373594-6373613 | Msa0871480:intron | 45.0% |
| ! | CTTCAGATTGAAGGTGTGTC+CGG | - | chr6_1:6373616-6373635 | None:intergenic | 45.0% |
| CCCATCTTTCAATCCTGCAA+TGG | - | chr6_1:6374380-6374399 | None:intergenic | 45.0% | |
| TGAAAGATGGGTCAAGCACT+AGG | + | chr6_1:6374389-6374408 | Msa0871480:exon | 45.0% | |
| ATCTGGTAACCAAGACACCA+AGG | - | chr6_1:6374503-6374522 | None:intergenic | 45.0% | |
| TGTCTTGGTTACCAGATAGC+TGG | + | chr6_1:6374506-6374525 | Msa0871480:CDS | 45.0% | |
| TTGGTTACCAGATAGCTGGT+GGG | + | chr6_1:6374510-6374529 | Msa0871480:CDS | 45.0% | |
| ! | ATCAAGTTGCTGGACACGAA+GGG | - | chr6_1:6374540-6374559 | None:intergenic | 45.0% |
| ! | CGCATTTCACATCAAGTTGC+TGG | - | chr6_1:6374550-6374569 | None:intergenic | 45.0% |
| GCATCATGAAGCAGAATAGG+CGG | - | chr6_1:6374611-6374630 | None:intergenic | 45.0% | |
| AAACCTGGGCTTACTTAACG+GGG | + | chr6_1:6375077-6375096 | Msa0871480:intron | 45.0% | |
| AACAGTCAGATTCCAGCAAC+AGG | - | chr6_1:6375132-6375151 | None:intergenic | 45.0% | |
| !! | GGTGTTGGTGAGCCTATAAA+AGG | - | chr6_1:6375239-6375258 | None:intergenic | 45.0% |
| TTTATAGGCTCACCAACACC+AGG | + | chr6_1:6375239-6375258 | Msa0871480:CDS | 45.0% | |
| TTATAGGCTCACCAACACCA+GGG | + | chr6_1:6375240-6375259 | Msa0871480:CDS | 45.0% | |
| AAGTGTGCCGAAGTTGGAAT+TGG | + | chr6_1:6375551-6375570 | Msa0871480:CDS | 45.0% | |
| CATTGCAAAGGCTGTTGAAG+AGG | + | chr6_1:6375599-6375618 | Msa0871480:CDS | 45.0% | |
| TGTTGAAGAGGAGCTTGAGA+AGG | + | chr6_1:6375611-6375630 | Msa0871480:CDS | 45.0% | |
| GCAATGAACGAGATCAATGC+AGG | + | chr6_1:6375818-6375837 | Msa0871480:CDS | 45.0% | |
| TTTGTGGCACTATAGCGTAG+TGG | + | chr6_1:6376000-6376019 | Msa0871480:intron | 45.0% | |
| ! | GTGTTGTCAATTGCGGATTG+TGG | - | chr6_1:6376046-6376065 | None:intergenic | 45.0% |
| TCATGGTACAGTCTGTGTTC+TGG | + | chr6_1:6376213-6376232 | Msa0871480:intron | 45.0% | |
| TTCTGCTTCAGCCTTCTCAT+TGG | - | chr6_1:6376746-6376765 | None:intergenic | 45.0% | |
| GCAGAGTCCAAATATCTGTC+CGG | + | chr6_1:6376799-6376818 | Msa0871480:CDS | 45.0% | |
| TCCAAATATCTGTCCGGACT+TGG | + | chr6_1:6376805-6376824 | Msa0871480:CDS | 45.0% | |
| ACCAAGTCCGGACAGATATT+TGG | - | chr6_1:6376809-6376828 | None:intergenic | 45.0% | |
| TTGACGAGCTATACCAAGTC+CGG | - | chr6_1:6376821-6376840 | None:intergenic | 45.0% | |
| CATCTTTAGCAGTTGTTCCG+GGG | - | chr6_1:6376900-6376919 | None:intergenic | 45.0% | |
| AGATGTCATGGACATGGTGT+TGG | + | chr6_1:6376915-6376934 | Msa0871480:CDS | 45.0% | |
| !!! | AATTTTTTATTTATTTTGTT+TGG | + | chr6_1:6373075-6373094 | Msa0871480:intron | 5.0% |
| TCGACACGACACTAACACAC+CGG | + | chr6_1:6373533-6373552 | Msa0871480:intron | 50.0% | |
| CAAGACACCAAGGCAGACAA+TGG | - | chr6_1:6374493-6374512 | None:intergenic | 50.0% | |
| !! | CATTGTCTGCCTTGGTGTCT+TGG | + | chr6_1:6374491-6374510 | Msa0871480:CDS | 50.0% |
| CTTGGTTACCAGATAGCTGG+TGG | + | chr6_1:6374509-6374528 | Msa0871480:CDS | 50.0% | |
| ! | CATCAAGTTGCTGGACACGA+AGG | - | chr6_1:6374541-6374560 | None:intergenic | 50.0% |
| ATCTGTACAATACCGCGCTG+TGG | + | chr6_1:6375195-6375214 | Msa0871480:CDS | 50.0% | |
| TTGGATCTGTTCCCTGGTGT+TGG | - | chr6_1:6375254-6375273 | None:intergenic | 50.0% | |
| GCATTCTCAGAGAATGTCCC+CGG | + | chr6_1:6376880-6376899 | Msa0871480:CDS | 50.0% | |
| !! | GGATGCACCGATTTCCTTCA+TGG | - | chr6_1:6376959-6376978 | None:intergenic | 50.0% |
| GTGTTCATTCCACATGGTCC+TGG | + | chr6_1:6376994-6377013 | Msa0871480:CDS | 50.0% | |
| CAAGGCAGACAATGGCATCC+AGG | - | chr6_1:6374485-6374504 | None:intergenic | 55.0% | |
| CTGGATGCCATTGTCTGCCT+TGG | + | chr6_1:6374483-6374502 | Msa0871480:CDS | 55.0% | |
| CAACCCCGTTAAGTAAGCCC+AGG | - | chr6_1:6375083-6375102 | None:intergenic | 55.0% | |
| AAGGGCAAGTGTGCCGAAGT+TGG | + | chr6_1:6375545-6375564 | Msa0871480:CDS | 55.0% | |
| ! | GAGGTTGGCTGCCAATGAGA+AGG | + | chr6_1:6376732-6376751 | Msa0871480:CDS | 55.0% |
| GCAATGTCTCTGACAGCACC+AGG | - | chr6_1:6377015-6377034 | None:intergenic | 55.0% | |
| GGGACAACCCACCAGCTATC+TGG | - | chr6_1:6374520-6374539 | None:intergenic | 60.0% | |
| ACGCTTTGTCAGCCACAGCG+CGG | - | chr6_1:6375210-6375229 | None:intergenic | 60.0% | |
| CTGACAGCACCAGGACCATG+TGG | - | chr6_1:6377006-6377025 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6372872 | 6377333 | 6372872 | ID=Msa0871480;Name=Msa0871480 |
| chr6_1 | mRNA | 6372872 | 6377333 | 6372872 | ID=Msa0871480-mRNA-1;Parent=Msa0871480;Name=Msa0871480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=194|1|1|1|0.8|0.66|6|250|286 |
| chr6_1 | exon | 6372872 | 6373056 | 6372872 | ID=Msa0871480-mRNA-1:exon:1917;Parent=Msa0871480-mRNA-1 |
| chr6_1 | exon | 6374386 | 6374583 | 6374386 | ID=Msa0871480-mRNA-1:exon:1918;Parent=Msa0871480-mRNA-1 |
| chr6_1 | exon | 6375169 | 6375289 | 6375169 | ID=Msa0871480-mRNA-1:exon:1919;Parent=Msa0871480-mRNA-1 |
| chr6_1 | exon | 6375541 | 6375632 | 6375541 | ID=Msa0871480-mRNA-1:exon:1920;Parent=Msa0871480-mRNA-1 |
| chr6_1 | exon | 6375743 | 6375839 | 6375743 | ID=Msa0871480-mRNA-1:exon:1921;Parent=Msa0871480-mRNA-1 |
| chr6_1 | exon | 6376722 | 6377333 | 6376722 | ID=Msa0871480-mRNA-1:exon:1922;Parent=Msa0871480-mRNA-1 |
| chr6_1 | five_prime_UTR | 6372872 | 6373056 | 6372872 | ID=Msa0871480-mRNA-1:five_prime_utr;Parent=Msa0871480-mRNA-1 |
| chr6_1 | five_prime_UTR | 6374386 | 6374394 | 6374386 | ID=Msa0871480-mRNA-1:five_prime_utr;Parent=Msa0871480-mRNA-1 |
| chr6_1 | CDS | 6374395 | 6374583 | 6374395 | ID=Msa0871480-mRNA-1:cds;Parent=Msa0871480-mRNA-1 |
| chr6_1 | CDS | 6375169 | 6375289 | 6375169 | ID=Msa0871480-mRNA-1:cds;Parent=Msa0871480-mRNA-1 |
| chr6_1 | CDS | 6375541 | 6375632 | 6375541 | ID=Msa0871480-mRNA-1:cds;Parent=Msa0871480-mRNA-1 |
| chr6_1 | CDS | 6375743 | 6375839 | 6375743 | ID=Msa0871480-mRNA-1:cds;Parent=Msa0871480-mRNA-1 |
| chr6_1 | CDS | 6376722 | 6377083 | 6376722 | ID=Msa0871480-mRNA-1:cds;Parent=Msa0871480-mRNA-1 |
| chr6_1 | three_prime_UTR | 6377084 | 6377333 | 6377084 | ID=Msa0871480-mRNA-1:three_prime_utr;Parent=Msa0871480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
