Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871870 | XP_004489284.1 | 89.444 | 180 | 19 | 0 | 1 | 180 | 1 | 180 | 1.27e-110 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871870 | sp|Q84V25|ENOXE_FRAAN | 71.084 | 166 | 46 | 1 | 1 | 164 | 1 | 166 | 1.02e-78 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871870 | A0A1S2XH35 | 89.444 | 180 | 19 | 0 | 1 | 180 | 1 | 180 | 6.07e-111 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0871870 | Msa0871880 | 0.810600 | 1.063446e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871870 | MtrunA17_Chr6g0453201 | 95.062 | 162 | 8 | 0 | 1 | 162 | 1 | 162 | 2.24e-108 | 312 |
| Msa0871870 | MtrunA17_Chr6g0453191 | 87.654 | 162 | 20 | 0 | 1 | 162 | 1 | 162 | 4.22e-99 | 288 |
| Msa0871870 | MtrunA17_Chr8g0365421 | 68.391 | 174 | 54 | 1 | 7 | 180 | 72 | 244 | 1.44e-79 | 241 |
| Msa0871870 | MtrunA17_Chr6g0466321 | 64.571 | 175 | 62 | 0 | 6 | 180 | 14 | 188 | 3.30e-67 | 208 |
| Msa0871870 | MtrunA17_Chr6g0465501 | 64.571 | 175 | 62 | 0 | 6 | 180 | 14 | 188 | 5.92e-67 | 207 |
| Msa0871870 | MtrunA17_Chr7g0228011 | 70.238 | 168 | 50 | 0 | 13 | 180 | 10 | 177 | 1.05e-63 | 198 |
| Msa0871870 | MtrunA17_Chr8g0351271 | 49.112 | 169 | 81 | 4 | 13 | 180 | 6 | 170 | 1.35e-41 | 142 |
| Msa0871870 | MtrunA17_Chr8g0351481 | 49.704 | 169 | 80 | 4 | 13 | 180 | 6 | 170 | 1.56e-41 | 142 |
| Msa0871870 | MtrunA17_Chr4g0014971 | 38.150 | 173 | 92 | 4 | 16 | 180 | 11 | 176 | 4.15e-24 | 96.3 |
| Msa0871870 | MtrunA17_Chr4g0014951 | 39.655 | 174 | 88 | 6 | 16 | 180 | 11 | 176 | 4.65e-24 | 96.3 |
| Msa0871870 | MtrunA17_Chr4g0015051 | 37.500 | 176 | 95 | 4 | 13 | 180 | 8 | 176 | 1.60e-23 | 94.7 |
| Msa0871870 | MtrunA17_Chr7g0235021 | 37.931 | 174 | 90 | 6 | 16 | 180 | 11 | 175 | 2.27e-22 | 91.7 |
| Msa0871870 | MtrunA17_Chr4g0014931 | 37.572 | 173 | 93 | 4 | 16 | 180 | 11 | 176 | 3.76e-22 | 91.3 |
| Msa0871870 | MtrunA17_Chr4g0015091 | 41.279 | 172 | 87 | 7 | 16 | 180 | 11 | 175 | 4.20e-22 | 90.9 |
| Msa0871870 | MtrunA17_Chr4g0014691 | 37.908 | 153 | 82 | 3 | 35 | 180 | 29 | 175 | 3.75e-20 | 85.9 |
| Msa0871870 | MtrunA17_Chr4g0014541 | 37.908 | 153 | 82 | 3 | 35 | 180 | 29 | 175 | 3.79e-20 | 85.9 |
| Msa0871870 | MtrunA17_Chr6g0465551 | 55.882 | 68 | 30 | 0 | 6 | 73 | 14 | 81 | 4.55e-19 | 77.4 |
| Msa0871870 | MtrunA17_Chr2g0316731 | 33.803 | 142 | 87 | 3 | 26 | 165 | 40 | 176 | 8.28e-19 | 82.4 |
| Msa0871870 | MtrunA17_Chr2g0281301 | 32.911 | 158 | 94 | 5 | 24 | 180 | 26 | 172 | 1.00e-13 | 67.8 |
| Msa0871870 | MtrunA17_Chr2g0281281 | 32.099 | 162 | 90 | 6 | 24 | 180 | 13 | 159 | 2.51e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871870 | AT1G23740.1 | 64.000 | 175 | 62 | 1 | 6 | 180 | 73 | 246 | 5.42e-71 | 219 |
| Msa0871870 | AT3G15090.1 | 32.335 | 167 | 105 | 4 | 1 | 165 | 22 | 182 | 3.24e-22 | 92.0 |
| Msa0871870 | AT4G13010.1 | 35.429 | 175 | 99 | 5 | 13 | 180 | 8 | 175 | 2.31e-18 | 81.3 |
| Msa0871870 | AT3G45770.1 | 30.994 | 171 | 107 | 4 | 11 | 180 | 45 | 205 | 2.54e-13 | 67.4 |
| Msa0871870 | AT3G56460.1 | 31.818 | 132 | 78 | 4 | 33 | 162 | 31 | 152 | 4.65e-13 | 66.6 |
| Msa0871870 | AT4G21580.1 | 30.380 | 158 | 98 | 5 | 24 | 180 | 13 | 159 | 3.77e-12 | 63.9 |
| Msa0871870 | AT4G21580.3 | 30.380 | 158 | 98 | 5 | 24 | 180 | 13 | 159 | 3.93e-12 | 63.5 |
Find 44 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAGCACTTGATCTTCTT+TGG | 0.141686 | 6_1:+7072990 | None:intergenic |
| AGTTGGATCTCTTGTTATTC+AGG | 0.225112 | 6_1:-7071924 | Msa0871870:CDS |
| ATGAGCACTTGATCTTCTTT+GGG | 0.250377 | 6_1:+7072991 | None:intergenic |
| AGACCAAGTGAAGAAATTTA+AGG | 0.266760 | 6_1:-7072182 | Msa0871870:CDS |
| TGTGACTATCAACAGGATTA+AGG | 0.277378 | 6_1:+7072950 | None:intergenic |
| GGTAAATCTATACTTGTTCT+TGG | 0.283788 | 6_1:-7071959 | Msa0871870:CDS |
| GGGTGTGGTGTAGGGACATT+AGG | 0.318121 | 6_1:+7073012 | None:intergenic |
| TCAACAAAACTCAAATTTGA+TGG | 0.328083 | 6_1:+7072049 | None:intergenic |
| GCTTGGGTTTACTCTCAATA+TGG | 0.336986 | 6_1:-7073063 | Msa0871870:CDS |
| AAGGTTGGAGATGAAGTTTA+TGG | 0.348171 | 6_1:-7072163 | Msa0871870:CDS |
| TCTTCTTTGGGGTGTGGTGT+AGG | 0.391333 | 6_1:+7073003 | None:intergenic |
| ATACTTGTTCTTGGAGGTGC+TGG | 0.403009 | 6_1:-7071950 | Msa0871870:CDS |
| CAACCTTAAATTTCTTCACT+TGG | 0.416756 | 6_1:+7072179 | None:intergenic |
| CTTCTTTGGGGTGTGGTGTA+GGG | 0.420927 | 6_1:+7073004 | None:intergenic |
| GTTGATAGTCACAGGGCTCT+TGG | 0.425932 | 6_1:-7072940 | Msa0871870:CDS |
| CTTGGAGGTGCTGGAGGAGT+TGG | 0.430227 | 6_1:-7071941 | Msa0871870:CDS |
| GTGACTATCAACAGGATTAA+GGG | 0.430986 | 6_1:+7072951 | None:intergenic |
| CAGGGCTCTTGGTCATTTCA+AGG | 0.448243 | 6_1:-7072929 | Msa0871870:CDS |
| AGCTGGTGTGGTGGTTAGTG+TGG | 0.451147 | 6_1:-7072206 | Msa0871870:CDS |
| CCCATCTCATACAACAGCTT+GGG | 0.451343 | 6_1:-7073079 | Msa0871870:CDS |
| ACTTGATCTTCTTTGGGGTG+TGG | 0.459077 | 6_1:+7072997 | None:intergenic |
| ATAAGCAGTAATTATTGCTA+AGG | 0.478817 | 6_1:+7072012 | None:intergenic |
| TTAATCCTGTTGATAGTCAC+AGG | 0.480836 | 6_1:-7072948 | Msa0871870:CDS |
| GCAATAATTACTGCTTATCA+AGG | 0.482826 | 6_1:-7072007 | Msa0871870:CDS |
| ACCCAAGCTGTTGTATGAGA+TGG | 0.485277 | 6_1:+7073078 | None:intergenic |
| AGAGCCCTGTGACTATCAAC+AGG | 0.501896 | 6_1:+7072943 | None:intergenic |
| CTTGTTCTTGGAGGTGCTGG+AGG | 0.510132 | 6_1:-7071947 | Msa0871870:CDS |
| TCCCATCTCATACAACAGCT+TGG | 0.515688 | 6_1:-7073080 | Msa0871870:CDS |
| CCCAAGCTGTTGTATGAGAT+GGG | 0.518907 | 6_1:+7073079 | None:intergenic |
| AAATCTATACTTGTTCTTGG+AGG | 0.522680 | 6_1:-7071956 | Msa0871870:CDS |
| TAAGCAGTAATTATTGCTAA+GGG | 0.524638 | 6_1:+7072013 | None:intergenic |
| TGAGCACTTGATCTTCTTTG+GGG | 0.535877 | 6_1:+7072992 | None:intergenic |
| TCAAGTGCTCATCAAGGTTG+TGG | 0.539457 | 6_1:-7072980 | Msa0871870:CDS |
| CAAGTGAAGAAATTTAAGGT+TGG | 0.546713 | 6_1:-7072178 | Msa0871870:CDS |
| GCTGGTGTGGTGGTTAGTGT+GGG | 0.550633 | 6_1:-7072205 | Msa0871870:CDS |
| AGAAGATCAAGTGCTCATCA+AGG | 0.576535 | 6_1:-7072986 | Msa0871870:CDS |
| ACACCAGCTACATCATGTCC+TGG | 0.583770 | 6_1:+7072220 | None:intergenic |
| GTGCCAGGACATGATGTAGC+TGG | 0.590946 | 6_1:-7072223 | Msa0871870:CDS |
| GGTCATTTGAAGACTGTGCC+AGG | 0.601440 | 6_1:-7072238 | Msa0871870:intron |
| GTTGTATGAGATGGGATACT+AGG | 0.614279 | 6_1:+7073087 | None:intergenic |
| AGGACATGATGTAGCTGGTG+TGG | 0.622214 | 6_1:-7072218 | Msa0871870:CDS |
| ACATGATGTAGCTGGTGTGG+TGG | 0.662483 | 6_1:-7072215 | Msa0871870:CDS |
| TAATCCTGTTGATAGTCACA+GGG | 0.668417 | 6_1:-7072947 | Msa0871870:CDS |
| AAGCAGTAATTATTGCTAAG+GGG | 0.680098 | 6_1:+7072014 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAAATAATTATGATTTA+AGG | + | chr6_1:7072643-7072662 | None:intergenic | 10.0% |
| !! | TTAGAAATAATTATGATTTA+AGG | + | chr6_1:7072643-7072662 | None:intergenic | 10.0% |
| !! | AGACATTCAAATAATTAAAA+AGG | + | chr6_1:7072282-7072301 | None:intergenic | 15.0% |
| !! | GTAAAAATTATTTAATATGC+TGG | + | chr6_1:7072579-7072598 | None:intergenic | 15.0% |
| !! | AGACATTCAAATAATTAAAA+AGG | + | chr6_1:7072282-7072301 | None:intergenic | 15.0% |
| !! | GTAAAAATTATTTAATATGC+TGG | + | chr6_1:7072579-7072598 | None:intergenic | 15.0% |
| !! | AATAGAAATTTTACTGGCAA+AGG | + | chr6_1:7072126-7072145 | None:intergenic | 25.0% |
| !! | GATGGTAATAGAAATTTTAC+TGG | + | chr6_1:7072132-7072151 | None:intergenic | 25.0% |
| ! | ATTCATATTTAGGTCATTGA+TGG | + | chr6_1:7072150-7072169 | None:intergenic | 25.0% |
| ! | CAATGACCTAAATATGAATT+TGG | - | chr6_1:7072151-7072170 | Msa0871870:CDS | 25.0% |
| !!! | ATTTGTTCTTTGTTTTTAGC+AGG | - | chr6_1:7072209-7072228 | Msa0871870:CDS | 25.0% |
| !!! | TTTGTTCTTTGTTTTTAGCA+GGG | - | chr6_1:7072210-7072229 | Msa0871870:CDS | 25.0% |
| !!! | TTTTTTCTTCTTCTTTTGTG+TGG | - | chr6_1:7072759-7072778 | Msa0871870:intron | 25.0% |
| ! | TTACACAATCCAAAAACTAT+TGG | - | chr6_1:7072897-7072916 | Msa0871870:intron | 25.0% |
| ! | TCAACAAAACTCAAATTTGA+TGG | + | chr6_1:7072972-7072991 | None:intergenic | 25.0% |
| ! | TAAGCAGTAATTATTGCTAA+GGG | + | chr6_1:7073008-7073027 | None:intergenic | 25.0% |
| ! | ATAAGCAGTAATTATTGCTA+AGG | + | chr6_1:7073009-7073028 | None:intergenic | 25.0% |
| !! | AATAGAAATTTTACTGGCAA+AGG | + | chr6_1:7072126-7072145 | None:intergenic | 25.0% |
| !! | GATGGTAATAGAAATTTTAC+TGG | + | chr6_1:7072132-7072151 | None:intergenic | 25.0% |
| ! | ATTCATATTTAGGTCATTGA+TGG | + | chr6_1:7072150-7072169 | None:intergenic | 25.0% |
| ! | CAATGACCTAAATATGAATT+TGG | - | chr6_1:7072151-7072170 | Msa0871870:CDS | 25.0% |
| !!! | ATTTGTTCTTTGTTTTTAGC+AGG | - | chr6_1:7072209-7072228 | Msa0871870:CDS | 25.0% |
| !!! | TTTGTTCTTTGTTTTTAGCA+GGG | - | chr6_1:7072210-7072229 | Msa0871870:CDS | 25.0% |
| !!! | TTTTTTCTTCTTCTTTTGTG+TGG | - | chr6_1:7072759-7072778 | Msa0871870:intron | 25.0% |
| ! | TTACACAATCCAAAAACTAT+TGG | - | chr6_1:7072897-7072916 | Msa0871870:intron | 25.0% |
| ! | TCAACAAAACTCAAATTTGA+TGG | + | chr6_1:7072972-7072991 | None:intergenic | 25.0% |
| ! | TAAGCAGTAATTATTGCTAA+GGG | + | chr6_1:7073008-7073027 | None:intergenic | 25.0% |
| ! | ATAAGCAGTAATTATTGCTA+AGG | + | chr6_1:7073009-7073028 | None:intergenic | 25.0% |
| TAGAGGCCAAATTCATATTT+AGG | + | chr6_1:7072160-7072179 | None:intergenic | 30.0% | |
| ! | TTTTCATGCCCCTTAAAAAA+TGG | - | chr6_1:7072436-7072455 | Msa0871870:intron | 30.0% |
| TTTGATATGACGAAAAACCA+GGG | + | chr6_1:7072503-7072522 | None:intergenic | 30.0% | |
| ATTTGATATGACGAAAAACC+AGG | + | chr6_1:7072504-7072523 | None:intergenic | 30.0% | |
| CACTGACAATCAATTACAAT+CGG | - | chr6_1:7072598-7072617 | Msa0871870:intron | 30.0% | |
| ACTGACAATCAATTACAATC+GGG | - | chr6_1:7072599-7072618 | Msa0871870:intron | 30.0% | |
| AATTCGTTGTAGTTTCTTGA+CGG | - | chr6_1:7072676-7072695 | Msa0871870:intron | 30.0% | |
| AGACCAAGTGAAGAAATTTA+AGG | - | chr6_1:7072836-7072855 | Msa0871870:intron | 30.0% | |
| CAACCTTAAATTTCTTCACT+TGG | + | chr6_1:7072842-7072861 | None:intergenic | 30.0% | |
| ! | CAAGTGAAGAAATTTAAGGT+TGG | - | chr6_1:7072840-7072859 | Msa0871870:intron | 30.0% |
| AAGCAGTAATTATTGCTAAG+GGG | + | chr6_1:7073007-7073026 | None:intergenic | 30.0% | |
| GCAATAATTACTGCTTATCA+AGG | - | chr6_1:7073011-7073030 | Msa0871870:CDS | 30.0% | |
| ! | GAAAGAGTTGAATTTTCTTC+TGG | - | chr6_1:7073038-7073057 | Msa0871870:CDS | 30.0% |
| GGTAAATCTATACTTGTTCT+TGG | - | chr6_1:7073059-7073078 | Msa0871870:CDS | 30.0% | |
| AAATCTATACTTGTTCTTGG+AGG | - | chr6_1:7073062-7073081 | Msa0871870:CDS | 30.0% | |
| TAGAGGCCAAATTCATATTT+AGG | + | chr6_1:7072160-7072179 | None:intergenic | 30.0% | |
| ! | TTTTCATGCCCCTTAAAAAA+TGG | - | chr6_1:7072436-7072455 | Msa0871870:intron | 30.0% |
| TTTGATATGACGAAAAACCA+GGG | + | chr6_1:7072503-7072522 | None:intergenic | 30.0% | |
| ATTTGATATGACGAAAAACC+AGG | + | chr6_1:7072504-7072523 | None:intergenic | 30.0% | |
| CACTGACAATCAATTACAAT+CGG | - | chr6_1:7072598-7072617 | Msa0871870:intron | 30.0% | |
| ACTGACAATCAATTACAATC+GGG | - | chr6_1:7072599-7072618 | Msa0871870:intron | 30.0% | |
| AATTCGTTGTAGTTTCTTGA+CGG | - | chr6_1:7072676-7072695 | Msa0871870:intron | 30.0% | |
| AGACCAAGTGAAGAAATTTA+AGG | - | chr6_1:7072836-7072855 | Msa0871870:intron | 30.0% | |
| CAACCTTAAATTTCTTCACT+TGG | + | chr6_1:7072842-7072861 | None:intergenic | 30.0% | |
| ! | CAAGTGAAGAAATTTAAGGT+TGG | - | chr6_1:7072840-7072859 | Msa0871870:intron | 30.0% |
| AAGCAGTAATTATTGCTAAG+GGG | + | chr6_1:7073007-7073026 | None:intergenic | 30.0% | |
| GCAATAATTACTGCTTATCA+AGG | - | chr6_1:7073011-7073030 | Msa0871870:CDS | 30.0% | |
| ! | GAAAGAGTTGAATTTTCTTC+TGG | - | chr6_1:7073038-7073057 | Msa0871870:CDS | 30.0% |
| GGTAAATCTATACTTGTTCT+TGG | - | chr6_1:7073059-7073078 | Msa0871870:CDS | 30.0% | |
| AAATCTATACTTGTTCTTGG+AGG | - | chr6_1:7073062-7073081 | Msa0871870:CDS | 30.0% | |
| ATGAGCACTTGATCTTCTTT+GGG | + | chr6_1:7072030-7072049 | None:intergenic | 35.0% | |
| GTGACTATCAACAGGATTAA+GGG | + | chr6_1:7072070-7072089 | None:intergenic | 35.0% | |
| TGTGACTATCAACAGGATTA+AGG | + | chr6_1:7072071-7072090 | None:intergenic | 35.0% | |
| !! | TTAATCCTGTTGATAGTCAC+AGG | - | chr6_1:7072070-7072089 | Msa0871870:CDS | 35.0% |
| !! | TAATCCTGTTGATAGTCACA+GGG | - | chr6_1:7072071-7072090 | Msa0871870:CDS | 35.0% |
| !!! | TTCTTTGTTTTTAGCAGGGT+CGG | - | chr6_1:7072214-7072233 | Msa0871870:CDS | 35.0% |
| ATCAGGGCACAAAAAATCTT+AGG | + | chr6_1:7072241-7072260 | None:intergenic | 35.0% | |
| !! | CAACTTTATTGACTCGATCA+GGG | + | chr6_1:7072257-7072276 | None:intergenic | 35.0% |
| !! | ACAACTTTATTGACTCGATC+AGG | + | chr6_1:7072258-7072277 | None:intergenic | 35.0% |
| GTTTCATGCTGATATCTTGT+TGG | + | chr6_1:7072711-7072730 | None:intergenic | 35.0% | |
| AAGGTTGGAGATGAAGTTTA+TGG | - | chr6_1:7072855-7072874 | Msa0871870:intron | 35.0% | |
| !! | GACAAAGCACCAATAGTTTT+TGG | + | chr6_1:7072909-7072928 | None:intergenic | 35.0% |
| !! | AGTTGGATCTCTTGTTATTC+AGG | - | chr6_1:7073094-7073113 | Msa0871870:CDS | 35.0% |
| ATGAGCACTTGATCTTCTTT+GGG | + | chr6_1:7072030-7072049 | None:intergenic | 35.0% | |
| GTGACTATCAACAGGATTAA+GGG | + | chr6_1:7072070-7072089 | None:intergenic | 35.0% | |
| TGTGACTATCAACAGGATTA+AGG | + | chr6_1:7072071-7072090 | None:intergenic | 35.0% | |
| !! | TTAATCCTGTTGATAGTCAC+AGG | - | chr6_1:7072070-7072089 | Msa0871870:CDS | 35.0% |
| !! | TAATCCTGTTGATAGTCACA+GGG | - | chr6_1:7072071-7072090 | Msa0871870:CDS | 35.0% |
| !!! | TTCTTTGTTTTTAGCAGGGT+CGG | - | chr6_1:7072214-7072233 | Msa0871870:CDS | 35.0% |
| ATCAGGGCACAAAAAATCTT+AGG | + | chr6_1:7072241-7072260 | None:intergenic | 35.0% | |
| !! | CAACTTTATTGACTCGATCA+GGG | + | chr6_1:7072257-7072276 | None:intergenic | 35.0% |
| !! | ACAACTTTATTGACTCGATC+AGG | + | chr6_1:7072258-7072277 | None:intergenic | 35.0% |
| GTTTCATGCTGATATCTTGT+TGG | + | chr6_1:7072711-7072730 | None:intergenic | 35.0% | |
| AAGGTTGGAGATGAAGTTTA+TGG | - | chr6_1:7072855-7072874 | Msa0871870:intron | 35.0% | |
| !! | GACAAAGCACCAATAGTTTT+TGG | + | chr6_1:7072909-7072928 | None:intergenic | 35.0% |
| !! | AGTTGGATCTCTTGTTATTC+AGG | - | chr6_1:7073094-7073113 | Msa0871870:CDS | 35.0% |
| GTTGTATGAGATGGGATACT+AGG | + | chr6_1:7071934-7071953 | None:intergenic | 40.0% | |
| GCTTGGGTTTACTCTCAATA+TGG | - | chr6_1:7071955-7071974 | Msa0871870:CDS | 40.0% | |
| TGAGCACTTGATCTTCTTTG+GGG | + | chr6_1:7072029-7072048 | None:intergenic | 40.0% | |
| GATGAGCACTTGATCTTCTT+TGG | + | chr6_1:7072031-7072050 | None:intergenic | 40.0% | |
| AGAAGATCAAGTGCTCATCA+AGG | - | chr6_1:7072032-7072051 | Msa0871870:CDS | 40.0% | |
| ATATGACGAAAAACCAGGGA+CGG | + | chr6_1:7072499-7072518 | None:intergenic | 40.0% | |
| GTTGTATGAGATGGGATACT+AGG | + | chr6_1:7071934-7071953 | None:intergenic | 40.0% | |
| GCTTGGGTTTACTCTCAATA+TGG | - | chr6_1:7071955-7071974 | Msa0871870:CDS | 40.0% | |
| TGAGCACTTGATCTTCTTTG+GGG | + | chr6_1:7072029-7072048 | None:intergenic | 40.0% | |
| GATGAGCACTTGATCTTCTT+TGG | + | chr6_1:7072031-7072050 | None:intergenic | 40.0% | |
| AGAAGATCAAGTGCTCATCA+AGG | - | chr6_1:7072032-7072051 | Msa0871870:CDS | 40.0% | |
| ATATGACGAAAAACCAGGGA+CGG | + | chr6_1:7072499-7072518 | None:intergenic | 40.0% | |
| TCCCATCTCATACAACAGCT+TGG | - | chr6_1:7071938-7071957 | Msa0871870:CDS | 45.0% | |
| CCCAAGCTGTTGTATGAGAT+GGG | + | chr6_1:7071942-7071961 | None:intergenic | 45.0% | |
| CCCATCTCATACAACAGCTT+GGG | - | chr6_1:7071939-7071958 | Msa0871870:CDS | 45.0% | |
| ACCCAAGCTGTTGTATGAGA+TGG | + | chr6_1:7071943-7071962 | None:intergenic | 45.0% | |
| !! | ACTTGATCTTCTTTGGGGTG+TGG | + | chr6_1:7072024-7072043 | None:intergenic | 45.0% |
| TCAAGTGCTCATCAAGGTTG+TGG | - | chr6_1:7072038-7072057 | Msa0871870:CDS | 45.0% | |
| !!! | CCAGGGCACCATTTTTTAAG+GGG | + | chr6_1:7072447-7072466 | None:intergenic | 45.0% |
| !!! | CCCAGGGCACCATTTTTTAA+GGG | + | chr6_1:7072448-7072467 | None:intergenic | 45.0% |
| CCCTTAAAAAATGGTGCCCT+GGG | - | chr6_1:7072445-7072464 | Msa0871870:intron | 45.0% | |
| ! | ATACTTGTTCTTGGAGGTGC+TGG | - | chr6_1:7073068-7073087 | Msa0871870:CDS | 45.0% |
| TCCCATCTCATACAACAGCT+TGG | - | chr6_1:7071938-7071957 | Msa0871870:CDS | 45.0% | |
| CCCAAGCTGTTGTATGAGAT+GGG | + | chr6_1:7071942-7071961 | None:intergenic | 45.0% | |
| CCCATCTCATACAACAGCTT+GGG | - | chr6_1:7071939-7071958 | Msa0871870:CDS | 45.0% | |
| ACCCAAGCTGTTGTATGAGA+TGG | + | chr6_1:7071943-7071962 | None:intergenic | 45.0% | |
| !! | ACTTGATCTTCTTTGGGGTG+TGG | + | chr6_1:7072024-7072043 | None:intergenic | 45.0% |
| TCAAGTGCTCATCAAGGTTG+TGG | - | chr6_1:7072038-7072057 | Msa0871870:CDS | 45.0% | |
| !!! | CCAGGGCACCATTTTTTAAG+GGG | + | chr6_1:7072447-7072466 | None:intergenic | 45.0% |
| !!! | CCCAGGGCACCATTTTTTAA+GGG | + | chr6_1:7072448-7072467 | None:intergenic | 45.0% |
| CCCTTAAAAAATGGTGCCCT+GGG | - | chr6_1:7072445-7072464 | Msa0871870:intron | 45.0% | |
| ! | ATACTTGTTCTTGGAGGTGC+TGG | - | chr6_1:7073068-7073087 | Msa0871870:CDS | 45.0% |
| !! | AAATAAAAATAAAAATTTAG+AGG | + | chr6_1:7072177-7072196 | None:intergenic | 5.0% |
| !! | AAATAAAAATAAAAATTTAG+AGG | + | chr6_1:7072177-7072196 | None:intergenic | 5.0% |
| !! | CTTCTTTGGGGTGTGGTGTA+GGG | + | chr6_1:7072017-7072036 | None:intergenic | 50.0% |
| !! | TCTTCTTTGGGGTGTGGTGT+AGG | + | chr6_1:7072018-7072037 | None:intergenic | 50.0% |
| AGAGCCCTGTGACTATCAAC+AGG | + | chr6_1:7072078-7072097 | None:intergenic | 50.0% | |
| !! | GTTGATAGTCACAGGGCTCT+TGG | - | chr6_1:7072078-7072097 | Msa0871870:CDS | 50.0% |
| CAGGGCTCTTGGTCATTTCA+AGG | - | chr6_1:7072089-7072108 | Msa0871870:CDS | 50.0% | |
| CCCCTTAAAAAATGGTGCCC+TGG | - | chr6_1:7072444-7072463 | Msa0871870:intron | 50.0% | |
| !!! | GCCCAGGGCACCATTTTTTA+AGG | + | chr6_1:7072449-7072468 | None:intergenic | 50.0% |
| GGTCATTTGAAGACTGTGCC+AGG | - | chr6_1:7072780-7072799 | Msa0871870:intron | 50.0% | |
| ACACCAGCTACATCATGTCC+TGG | + | chr6_1:7072801-7072820 | None:intergenic | 50.0% | |
| AGGACATGATGTAGCTGGTG+TGG | - | chr6_1:7072800-7072819 | Msa0871870:intron | 50.0% | |
| ACATGATGTAGCTGGTGTGG+TGG | - | chr6_1:7072803-7072822 | Msa0871870:intron | 50.0% | |
| !! | CTTCTTTGGGGTGTGGTGTA+GGG | + | chr6_1:7072017-7072036 | None:intergenic | 50.0% |
| !! | TCTTCTTTGGGGTGTGGTGT+AGG | + | chr6_1:7072018-7072037 | None:intergenic | 50.0% |
| AGAGCCCTGTGACTATCAAC+AGG | + | chr6_1:7072078-7072097 | None:intergenic | 50.0% | |
| !! | GTTGATAGTCACAGGGCTCT+TGG | - | chr6_1:7072078-7072097 | Msa0871870:CDS | 50.0% |
| CAGGGCTCTTGGTCATTTCA+AGG | - | chr6_1:7072089-7072108 | Msa0871870:CDS | 50.0% | |
| CCCCTTAAAAAATGGTGCCC+TGG | - | chr6_1:7072444-7072463 | Msa0871870:intron | 50.0% | |
| !!! | GCCCAGGGCACCATTTTTTA+AGG | + | chr6_1:7072449-7072468 | None:intergenic | 50.0% |
| GGTCATTTGAAGACTGTGCC+AGG | - | chr6_1:7072780-7072799 | Msa0871870:intron | 50.0% | |
| ACACCAGCTACATCATGTCC+TGG | + | chr6_1:7072801-7072820 | None:intergenic | 50.0% | |
| AGGACATGATGTAGCTGGTG+TGG | - | chr6_1:7072800-7072819 | Msa0871870:intron | 50.0% | |
| ACATGATGTAGCTGGTGTGG+TGG | - | chr6_1:7072803-7072822 | Msa0871870:intron | 50.0% | |
| GGGTGTGGTGTAGGGACATT+AGG | + | chr6_1:7072009-7072028 | None:intergenic | 55.0% | |
| TTGAGGGTGGGCAGGAAATG+CGG | + | chr6_1:7072474-7072493 | None:intergenic | 55.0% | |
| AAAACCAGGGACGGCCTTGA+GGG | + | chr6_1:7072490-7072509 | None:intergenic | 55.0% | |
| AAAAACCAGGGACGGCCTTG+AGG | + | chr6_1:7072491-7072510 | None:intergenic | 55.0% | |
| GTGCCAGGACATGATGTAGC+TGG | - | chr6_1:7072795-7072814 | Msa0871870:intron | 55.0% | |
| AGCTGGTGTGGTGGTTAGTG+TGG | - | chr6_1:7072812-7072831 | Msa0871870:intron | 55.0% | |
| GCTGGTGTGGTGGTTAGTGT+GGG | - | chr6_1:7072813-7072832 | Msa0871870:intron | 55.0% | |
| !! | CTTGTTCTTGGAGGTGCTGG+AGG | - | chr6_1:7073071-7073090 | Msa0871870:CDS | 55.0% |
| GGGTGTGGTGTAGGGACATT+AGG | + | chr6_1:7072009-7072028 | None:intergenic | 55.0% | |
| TTGAGGGTGGGCAGGAAATG+CGG | + | chr6_1:7072474-7072493 | None:intergenic | 55.0% | |
| AAAACCAGGGACGGCCTTGA+GGG | + | chr6_1:7072490-7072509 | None:intergenic | 55.0% | |
| AAAAACCAGGGACGGCCTTG+AGG | + | chr6_1:7072491-7072510 | None:intergenic | 55.0% | |
| GTGCCAGGACATGATGTAGC+TGG | - | chr6_1:7072795-7072814 | Msa0871870:intron | 55.0% | |
| AGCTGGTGTGGTGGTTAGTG+TGG | - | chr6_1:7072812-7072831 | Msa0871870:intron | 55.0% | |
| GCTGGTGTGGTGGTTAGTGT+GGG | - | chr6_1:7072813-7072832 | Msa0871870:intron | 55.0% | |
| !! | CTTGTTCTTGGAGGTGCTGG+AGG | - | chr6_1:7073071-7073090 | Msa0871870:CDS | 55.0% |
| GCATTTCCTGCCCACCCTCA+AGG | - | chr6_1:7072473-7072492 | Msa0871870:intron | 60.0% | |
| !! | CTTGGAGGTGCTGGAGGAGT+TGG | - | chr6_1:7073077-7073096 | Msa0871870:CDS | 60.0% |
| GCATTTCCTGCCCACCCTCA+AGG | - | chr6_1:7072473-7072492 | Msa0871870:intron | 60.0% | |
| !! | CTTGGAGGTGCTGGAGGAGT+TGG | - | chr6_1:7073077-7073096 | Msa0871870:CDS | 60.0% |
| AGGGTGGGCAGGAAATGCGG+CGG | + | chr6_1:7072471-7072490 | None:intergenic | 65.0% | |
| AGGGTGGGCAGGAAATGCGG+CGG | + | chr6_1:7072471-7072490 | None:intergenic | 65.0% | |
| GCAGGAAATGCGGCGGCCCA+GGG | + | chr6_1:7072464-7072483 | None:intergenic | 70.0% | |
| CCAGGGACGGCCTTGAGGGT+GGG | + | chr6_1:7072486-7072505 | None:intergenic | 70.0% | |
| ACCAGGGACGGCCTTGAGGG+TGG | + | chr6_1:7072487-7072506 | None:intergenic | 70.0% | |
| GCAGGAAATGCGGCGGCCCA+GGG | + | chr6_1:7072464-7072483 | None:intergenic | 70.0% | |
| CCAGGGACGGCCTTGAGGGT+GGG | + | chr6_1:7072486-7072505 | None:intergenic | 70.0% | |
| ACCAGGGACGGCCTTGAGGG+TGG | + | chr6_1:7072487-7072506 | None:intergenic | 70.0% | |
| GGCAGGAAATGCGGCGGCCC+AGG | + | chr6_1:7072465-7072484 | None:intergenic | 75.0% | |
| GGACGGCCTTGAGGGTGGGC+AGG | + | chr6_1:7072482-7072501 | None:intergenic | 75.0% | |
| CCCACCCTCAAGGCCGTCCC+TGG | - | chr6_1:7072483-7072502 | Msa0871870:intron | 75.0% | |
| GGCAGGAAATGCGGCGGCCC+AGG | + | chr6_1:7072465-7072484 | None:intergenic | 75.0% | |
| GGACGGCCTTGAGGGTGGGC+AGG | + | chr6_1:7072482-7072501 | None:intergenic | 75.0% | |
| CCCACCCTCAAGGCCGTCCC+TGG | - | chr6_1:7072483-7072502 | Msa0871870:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 7071919 | 7073121 | 7071919 | ID=Msa0871870;Name=Msa0871870 |
| chr6_1 | mRNA | 7071919 | 7073121 | 7071919 | ID=Msa0871870-mRNA-1;Parent=Msa0871870;Name=Msa0871870-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|2|0|180 |
| chr6_1 | exon | 7072909 | 7073121 | 7072909 | ID=Msa0871870-mRNA-1:exon:2170;Parent=Msa0871870-mRNA-1 |
| chr6_1 | exon | 7071919 | 7072248 | 7071919 | ID=Msa0871870-mRNA-1:exon:2169;Parent=Msa0871870-mRNA-1 |
| chr6_1 | CDS | 7072909 | 7073121 | 7072909 | ID=Msa0871870-mRNA-1:cds;Parent=Msa0871870-mRNA-1 |
| chr6_1 | CDS | 7071919 | 7072248 | 7071919 | ID=Msa0871870-mRNA-1:cds;Parent=Msa0871870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
