AlfalfaGEDB | Msa0873850

M. sativa cultivar zhongmu-4 / Msa0873850

KEGG: -
GO: GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873850	XP_013451011.1	96.850	1111	35	0	1	1111	1	1111	0.0	2174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873850	sp\|Q9S7I6\|RPK2_ARATH	62.424	1155	377	14	5	1111	6	1151	0.0	1344

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873850	A0A072U6P6	96.850	1111	35	0	1	1111	1	1111	0.0	2174

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0873850	Msa0938990	0.822095	2.844673e-53	-8.615850e-47
Msa0873850	Msa0975930	0.818791	1.630422e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873850	MtrunA17_Chr6g0454661	96.850	1111	35	0	1	1111	1	1111	0.0	2174
Msa0873850	MtrunA17_Chr6g0454621	89.838	1112	112	1	1	1111	1	1112	0.0	1946
Msa0873850	MtrunA17_Chr7g0252301	46.300	1000	505	13	130	1107	141	1130	0.0	806
Msa0873850	MtrunA17_Chr7g0252301	27.255	510	295	19	129	591	262	742	1.78e-19	94.7
Msa0873850	MtrunA17_Chr7g0252301	25.995	377	202	8	112	428	388	747	2.49e-13	74.7
Msa0873850	MtrunA17_Chr1g0203631	32.334	1101	607	25	114	1107	200	1269	7.55e-141	457
Msa0873850	MtrunA17_Chr1g0203631	31.780	708	395	21	29	711	28	672	3.33e-66	244
Msa0873850	MtrunA17_Chr1g0203631	35.371	229	113	6	526	725	120	342	4.03e-21	100
Msa0873850	MtrunA17_Chr2g0312651	32.783	1150	648	31	3	1103	9	1082	2.02e-138	446
Msa0873850	MtrunA17_Chr1g0169841	33.482	1123	614	35	33	1100	39	1083	4.65e-138	446

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873850	AT3G02130.1	62.424	1155	377	14	5	1111	6	1151	0.0	1344
Msa0873850	AT3G02130.2	63.710	1116	364	12	28	1111	28	1134	0.0	1341
Msa0873850	AT1G69270.1	59.375	448	172	3	668	1108	93	537	1.43e-170	513
Msa0873850	AT1G69270.1	39.157	166	84	4	6	167	7	159	2.52e-21	99.8
Msa0873850	AT5G07280.1	31.419	1149	594	28	117	1106	79	1192	1.31e-145	468
Msa0873850	AT5G07280.1	31.383	564	297	13	93	640	301	790	1.39e-49	192
Msa0873850	AT5G07280.1	41.176	102	59	1	611	711	78	179	3.82e-14	78.2
Msa0873850	AT5G63930.1	34.372	1123	607	33	33	1103	34	1078	4.36e-144	462
Msa0873850	AT5G63930.2	35.679	1009	562	26	117	1103	71	1014	4.29e-142	454
Msa0873850	AT5G63930.2	30.385	520	304	13	227	712	12	507	5.55e-47	184

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Find 266 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTCCAACCCATTAA+AGG	0.270096	6_1:-9456946	None:intergenic
AAACCCTCCAACCCATTAAA+GGG	0.465395	6_1:-9456945	None:intergenic
AAAGAGAGGCTTTGAAGCGG+AGG	0.542869	6_1:-9456641	None:intergenic
AAAGCTGATGTGTATAGCTA+CGG	0.591168	6_1:+9459576	Msa0873850:CDS
AACCATTTATGCATCATTAG+GGG	0.617616	6_1:+9457994	Msa0873850:CDS
AACTAGACCTACCATGAAAC+AGG	0.409557	6_1:+9459815	Msa0873850:CDS
AACTTTCCGCTTTATGGGTT+TGG	0.244415	6_1:+9456828	Msa0873850:CDS
AAGAGATTCCGAAGAGTTTG+GGG	0.607060	6_1:+9457318	Msa0873850:CDS
AAGAGCAACAACACGGGAGT+TGG	0.520417	6_1:-9456739	None:intergenic
AAGAGTTTGGGGAATTGTGG+TGG	0.506983	6_1:+9457329	Msa0873850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCATATTCCAAATCTCTTT+AGG	-	chr6_1:9456975-9456994	None:intergenic	30.0%
TTGAAGGTTTGAGAAAATTG+AGG	+	chr6_1:9457054-9457073	Msa0873850:CDS	30.0%
TGAAGGTTTGAGAAAATTGA+GGG	+	chr6_1:9457055-9457074	Msa0873850:CDS	30.0%
AGAATATTCCTGCTGAATTT+GGG	+	chr6_1:9457390-9457409	Msa0873850:CDS	30.0%
CAAACATTATCAGAGAAATC+AGG	-	chr6_1:9457881-9457900	None:intergenic	30.0%
AGAACCATTTATGCATCATT+AGG	+	chr6_1:9457992-9458011	Msa0873850:CDS	30.0%
GAACCATTTATGCATCATTA+GGG	+	chr6_1:9457993-9458012	Msa0873850:CDS	30.0%
AACCATTTATGCATCATTAG+GGG	+	chr6_1:9457994-9458013	Msa0873850:CDS	30.0%
CACATGCTACTAATATTAGA+AGG	-	chr6_1:9458241-9458260	None:intergenic	30.0%
GACAAATTCCCTTTACTTTA+GGG	+	chr6_1:9458305-9458324	Msa0873850:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	9456543	9459878	9456543	ID=Msa0873850;Name=Msa0873850
chr6_1	mRNA	9456543	9459878	9456543	ID=Msa0873850-mRNA-1;Parent=Msa0873850;Name=Msa0873850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1111
chr6_1	exon	9456543	9459878	9456543	ID=Msa0873850-mRNA-1:exon:2871;Parent=Msa0873850-mRNA-1
chr6_1	CDS	9456543	9459878	9456543	ID=Msa0873850-mRNA-1:cds;Parent=Msa0873850-mRNA-1

Gene Sequence

>Msa0873850

ATGTTTTCATCTTCAATTTTCATCAAATGGAGTTTCTTTCTTCTCTTCTTATCTTCTTCAAACGACGCCGTTTCATCATTTTCCGATAAATCAACACTCCTCCGCTTCAAAGCCTCTCTTTCCGACCCATCCGCCGTCCTCTCCACCTGGAGCTCTACTGCCAACCACTGTTCCTTCTATGGAGTTCTCTGTGATTCCAACTCCCGTGTTGTTGCTCTTAACATCACCGGCAACGGCGGCGTCGAAGATGGTAAACTGATTTCACATCCTTGCTCTGATTTTAATAACTTTCCGCTTTATGGGTTTGGAATTAGGAGAAGTTGTGTTGGTTTTAAGGGTTCTTTGTTTGGAAAGTTACCATCTTTGATCAGTGAGTTAACTGAGCTTAGGGTTTTGAATTTACCCTTTAATGGGTTGGAGGGTTTTATTCCTAAAGAGATTTGGAATATGGAGAAACTTGAGGTTCTTGATTTAGAAGGTAATTTGATTAGTGGGTCTATTCCTTTGAGTTTTGAAGGTTTGAGAAAATTGAGGGTTTTGAATTTAGGATTTAACAAGATTGTTGGAATGGTGCCTAGTGTTCTAGGTGATATTGATAGTTTGGAGGTTTTGAATTTGGCTGCAAATGGTTTGAATGGTTCTGTTCCTGGTTTTGTTGGGAAGTTTAGAGGGGTGTATTTGTCTTTTAATCAGTTTACCGGTGTTATTCCGGAGGAGATTGGTGAGAATTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGTAATTCGTTGGTTCAAGAGATTCCGAAGAGTTTGGGGAATTGTGGTGGGTTGAAGACGCTTTTGTTGTATTCAAATTTGTTGGAAGAGAATATTCCTGCTGAATTTGGGAAGCTTAAGATTCTTGAGGTGTTGGATGTTTCGAGGAATACACTTAGTGGTCGTATTCCTCATGAGCTTGGGAATTGTAAGGAGCTTTCTGTTGTTGTGCTGTCCAACCTTTTCGATCCGGTTGGGGATGGTGAGTTTGTTACTTTGAATGATGAGTTGAATTATTTTGAAGGTGGAATGCCTGAGGAAGTTGTGTCGCTTCCTAAGCTTAGGATTTTGTGGGCTCCCATGGTGAATTTGGAGGGTGGTATTCCTACGAGTTGGGGTGCTTGTGGTAACTTGGAGATGGTCAATTTGGCTCTGAATTTCTTCACCGGAGAGTTCCCAAACCAGCTTGGTTTATGTAAGAAGCTACATTTTCTTGATCTGAGCTCAAACAATCTTACTGGGGAGCTTTCTAAGGAACTTCATGTTCCATGTATGTCTGTGTTTGATGTTAGTGCAAACATGTTGTCCGGTTCAGTTCCTGATTTCTCTGATAATGTTTGTGCTCCCTATCCTTCCCGGAATGTGAATCCATTTGAAGTTGACGATGTCACTTCTCCTTATGCATCATATTTTTCATCGAAAGCTCATGATAGAACCATTTATGCATCATTAGGGGGAAATGGTCTTTCGGTTTTTCACAACTTTGGGCAAAATAACTTCAGTGGCATTCAGTCTTTGCCAGTAGTGCGTGACAGGATGGAGGAAAAGAGTAGTTACACACTTCTCGTTGGAGAGAACAAGCTCACAGGACCATTTCCTACATATTTGTTTGAGAAATGTGATGGATTAGATGCATTGTTTTTGAATGTCAGTTATAATCGGCTATCTGGTGAGATTCCTTCTAATATTAGTAGCATGTGCAAATCACTGAAATTTTTGGATGCATCCAGAAACCAATTTTCTGGACAAATTCCCTTTACTTTAGGGGATTTGGTCTCTCTTGTTTCCCTGAACCTCAGTAGAAACCAGTTACAAGGTCAGATTCCCACCAGCCTTGGACAGATGAAGGATCTGAAGTTTCTATCTTTTGCTGGTAATAACTTGAGTGGCTCAATTCCTACCAGCCTGGGACAGTTGTACTCTTTACAAGTCTTGGACCTGTCTACAAACTCTCTTACCGGTGAGATTCCAAAGTTTATCGAGAACATGAGAAATCTGACCAATGTTTTACTCAATAACAACAATCTTTCTGGACACATTCCTGCTGGTTTGGTAAATGTCACTACACTCTCTGCATTCAACGTGTCATTCAACAATTTATCCGGATACTTGCCTTCAAATAGTAGCTTGATCAAATGCAGCAGTGCTGTTGGGAATCCATTTTTAAGTTCCTGCCGCGGACTTTCTCTTACTGTACCATCAGCAAATCAACAAGGGCAGGTTGAAGACAGTTCTAGTTCATCACAAACTACTGGCAAAGATAGCAATAATGGTTTCAACGCTATTGAGATAGCATCTATTACTTCTGCTTCAGCCATTGTTTCAGTTCTTATAGCCCTTATTGTTCTGTTTTTCATTACGCGGAAGTGGAAGCCAAGGTCCCGGGTTGGTGGTTCAGTCAAAAGAGAAGTTACAGTGTTCACTGATATCGGTGTCCCGTTGACATTTGAAAATGTTGTCCAAGCCACAGGAAATTTCAATGCAGGCAACTGTATTGGGAGTGGAGGATTTGGAGCAACTTATAAGGCAGAGATATCACAAGGAATCTTGGTTGCAGTGAAACGTCTTTCTGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAACCTCGTCACTCTTATCGGTTACCATGCTTGCGAGACAGAGATGTTTCTCATATACAATTATCTTCCCGGTGGTAATCTTGAAAAGTTCATCCAGGAGAGATCTACAAGGGCTGTGGACTGGAAAGTTATTCACAAGATTGCACTGGACATAGCGCGTGCACTTTCTTATCTGCACGATCAATGTGTACCGCGTGTACTTCACCGTGATGTTAAGCCTAGCAATATCTTGTTGGACGACGATTGCAATGCTTATCTTTCCGACTTTGGACTCGCCAGACTTCTAGGAACTTCAGAGACACATGCGACAACTGGTGTGGCAGGAACATTCGGCTATGTTGCTCCCGAATACGCAATGACATGTCGTGTTTCCGATAAAGCTGATGTGTATAGCTACGGTGTGGTGCTTCTTGAGTTGCTGTCTGATAAGAAAGTTTTGGACCCTTCATTTTCTTCTTACGGGAATGGTTTCAATATAGTAGCATTTGCGTGCATGTTACTAAGGCAAGGAAGGGCAAAGGAGTTTTTCGCCGCAGGGTTATGGGAAGTAGGACCGGAACATGATTTGGTAGAGGTTCTACATTTAGCTGTTGTTTGTACTGTTGATTCACTTTCAACTAGACCTACCATGAAACAGGTTGTGAAAAGGTTAAAGCAACTTCAACCCCCACCATGCTAG

Protein sequence

>Msa0873850

MFSSSIFIKWSFFLLFLSSSNDAVSSFSDKSTLLRFKASLSDPSAVLSTWSSTANHCSFYGVLCDSNSRVVALNITGNGGVEDGKLISHPCSDFNNFPLYGFGIRRSCVGFKGSLFGKLPSLISELTELRVLNLPFNGLEGFIPKEIWNMEKLEVLDLEGNLISGSIPLSFEGLRKLRVLNLGFNKIVGMVPSVLGDIDSLEVLNLAANGLNGSVPGFVGKFRGVYLSFNQFTGVIPEEIGENCGKLEHLDLSGNSLVQEIPKSLGNCGGLKTLLLYSNLLEENIPAEFGKLKILEVLDVSRNTLSGRIPHELGNCKELSVVVLSNLFDPVGDGEFVTLNDELNYFEGGMPEEVVSLPKLRILWAPMVNLEGGIPTSWGACGNLEMVNLALNFFTGEFPNQLGLCKKLHFLDLSSNNLTGELSKELHVPCMSVFDVSANMLSGSVPDFSDNVCAPYPSRNVNPFEVDDVTSPYASYFSSKAHDRTIYASLGGNGLSVFHNFGQNNFSGIQSLPVVRDRMEEKSSYTLLVGENKLTGPFPTYLFEKCDGLDALFLNVSYNRLSGEIPSNISSMCKSLKFLDASRNQFSGQIPFTLGDLVSLVSLNLSRNQLQGQIPTSLGQMKDLKFLSFAGNNLSGSIPTSLGQLYSLQVLDLSTNSLTGEIPKFIENMRNLTNVLLNNNNLSGHIPAGLVNVTTLSAFNVSFNNLSGYLPSNSSLIKCSSAVGNPFLSSCRGLSLTVPSANQQGQVEDSSSSSQTTGKDSNNGFNAIEIASITSASAIVSVLIALIVLFFITRKWKPRSRVGGSVKREVTVFTDIGVPLTFENVVQATGNFNAGNCIGSGGFGATYKAEISQGILVAVKRLSVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWKVIHKIALDIARALSYLHDQCVPRVLHRDVKPSNILLDDDCNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKVLDPSFSSYGNGFNIVAFACMLLRQGRAKEFFAAGLWEVGPEHDLVEVLHLAVVCTVDSLSTRPTMKQVVKRLKQLQPPPC*