Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874610 | KEH25125.1 | 87.731 | 432 | 45 | 2 | 1 | 424 | 1 | 432 | 0.0 | 773 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874610 | sp|Q9SCZ4|FERON_ARATH | 40.330 | 424 | 217 | 16 | 18 | 426 | 21 | 423 | 1.01e-75 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874610 | A0A072UH49 | 87.731 | 432 | 45 | 2 | 1 | 424 | 1 | 432 | 0.0 | 773 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0342060 | Msa0874610 | 0.938856 | 3.361763e-99 | -8.615850e-47 |
| Msa0874610 | Msa1448840 | 0.804050 | 2.601286e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874610 | MtrunA17_Chr6g0455311 | 87.731 | 432 | 45 | 2 | 1 | 424 | 1 | 432 | 0.0 | 768 |
| Msa0874610 | MtrunA17_Chr6g0455321 | 84.719 | 445 | 49 | 6 | 1 | 433 | 1 | 438 | 0.0 | 747 |
| Msa0874610 | MtrunA17_Chr5g0420171 | 38.427 | 445 | 240 | 14 | 1 | 428 | 2 | 429 | 1.39e-83 | 273 |
| Msa0874610 | MtrunA17_Chr7g0219781 | 39.636 | 439 | 231 | 19 | 26 | 438 | 31 | 461 | 7.17e-78 | 259 |
| Msa0874610 | MtrunA17_Chr7g0219671 | 40.380 | 421 | 222 | 17 | 26 | 424 | 29 | 442 | 3.82e-75 | 251 |
| Msa0874610 | MtrunA17_Chr7g0219601 | 39.467 | 413 | 215 | 17 | 26 | 413 | 29 | 431 | 7.16e-74 | 248 |
| Msa0874610 | MtrunA17_Chr5g0420151 | 36.343 | 443 | 253 | 12 | 1 | 428 | 2 | 430 | 1.53e-73 | 246 |
| Msa0874610 | MtrunA17_Chr7g0245131 | 37.875 | 433 | 237 | 13 | 11 | 428 | 10 | 425 | 2.38e-73 | 247 |
| Msa0874610 | MtrunA17_Chr4g0025961 | 38.652 | 445 | 231 | 18 | 7 | 422 | 5 | 436 | 1.16e-72 | 245 |
| Msa0874610 | MtrunA17_Chr7g0219591 | 40.559 | 429 | 206 | 19 | 26 | 425 | 29 | 437 | 1.71e-72 | 238 |
| Msa0874610 | MtrunA17_Chr7g0219651 | 39.588 | 437 | 226 | 17 | 12 | 421 | 1008 | 1433 | 9.85e-72 | 246 |
| Msa0874610 | MtrunA17_Chr7g0219651 | 38.375 | 443 | 233 | 20 | 26 | 439 | 29 | 460 | 2.74e-68 | 236 |
| Msa0874610 | MtrunA17_Chr7g0219691 | 39.540 | 435 | 207 | 21 | 26 | 426 | 31 | 443 | 2.31e-70 | 238 |
| Msa0874610 | MtrunA17_Chr7g0219681 | 39.286 | 420 | 221 | 19 | 26 | 424 | 29 | 435 | 9.05e-70 | 236 |
| Msa0874610 | MtrunA17_Chr7g0219721 | 39.394 | 429 | 216 | 19 | 26 | 426 | 31 | 443 | 1.52e-69 | 236 |
| Msa0874610 | MtrunA17_Chr7g0219741 | 39.130 | 437 | 233 | 21 | 12 | 425 | 13 | 439 | 2.00e-69 | 230 |
| Msa0874610 | MtrunA17_Chr7g0219611 | 38.221 | 416 | 221 | 19 | 26 | 422 | 29 | 427 | 1.12e-66 | 228 |
| Msa0874610 | MtrunA17_Chr7g0219571 | 38.257 | 413 | 225 | 15 | 31 | 421 | 37 | 441 | 1.61e-65 | 225 |
| Msa0874610 | MtrunA17_Chr7g0274261 | 33.634 | 443 | 248 | 18 | 14 | 438 | 15 | 429 | 7.21e-50 | 181 |
| Msa0874610 | MtrunA17_Chr1g0190581 | 31.034 | 435 | 274 | 14 | 8 | 437 | 5 | 418 | 3.75e-49 | 179 |
| Msa0874610 | MtrunA17_Chr5g0420181 | 29.777 | 403 | 236 | 14 | 35 | 413 | 27 | 406 | 8.74e-44 | 163 |
| Msa0874610 | MtrunA17_Chr2g0292501 | 28.283 | 396 | 241 | 15 | 35 | 412 | 32 | 402 | 2.96e-30 | 124 |
| Msa0874610 | MtrunA17_Chr6g0468691 | 28.774 | 424 | 250 | 16 | 26 | 431 | 22 | 411 | 6.69e-30 | 122 |
| Msa0874610 | MtrunA17_Chr2g0318301 | 29.975 | 407 | 234 | 17 | 27 | 421 | 27 | 394 | 1.23e-29 | 122 |
| Msa0874610 | MtrunA17_Chr7g0248161 | 27.635 | 351 | 225 | 13 | 11 | 355 | 9 | 336 | 3.10e-26 | 110 |
| Msa0874610 | MtrunA17_Chr1g0165521 | 27.166 | 427 | 244 | 16 | 1 | 416 | 3 | 373 | 6.30e-26 | 110 |
| Msa0874610 | MtrunA17_Chr2g0327671 | 27.465 | 426 | 250 | 21 | 10 | 415 | 10 | 396 | 1.25e-25 | 110 |
| Msa0874610 | MtrunA17_Chr4g0030441 | 28.180 | 401 | 239 | 18 | 27 | 413 | 28 | 393 | 1.26e-25 | 110 |
| Msa0874610 | MtrunA17_Chr8g0352381 | 28.640 | 419 | 217 | 20 | 27 | 415 | 59 | 425 | 6.76e-24 | 105 |
| Msa0874610 | MtrunA17_Chr1g0202711 | 26.812 | 414 | 245 | 19 | 26 | 419 | 40 | 415 | 8.66e-24 | 104 |
| Msa0874610 | MtrunA17_Chr7g0219641 | 40.458 | 131 | 72 | 4 | 245 | 373 | 1 | 127 | 1.21e-23 | 98.6 |
| Msa0874610 | MtrunA17_Chr8g0361611 | 27.247 | 356 | 213 | 14 | 9 | 350 | 11 | 334 | 4.23e-23 | 102 |
| Msa0874610 | MtrunA17_Chr4g0061081 | 28.000 | 350 | 198 | 18 | 81 | 413 | 95 | 407 | 5.99e-22 | 99.0 |
| Msa0874610 | MtrunA17_Chr5g0420161 | 37.313 | 134 | 78 | 3 | 281 | 413 | 54 | 182 | 1.76e-18 | 87.8 |
| Msa0874610 | MtrunA17_Chr4g0053521 | 25.694 | 432 | 257 | 22 | 6 | 411 | 556 | 949 | 1.13e-17 | 86.3 |
| Msa0874610 | MtrunA17_Chr4g0053521 | 24.941 | 421 | 264 | 21 | 10 | 411 | 9 | 396 | 6.02e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874610 | AT3G51550.1 | 40.330 | 424 | 217 | 16 | 18 | 426 | 21 | 423 | 1.02e-76 | 256 |
| Msa0874610 | AT5G39000.1 | 37.379 | 412 | 228 | 15 | 27 | 426 | 26 | 419 | 3.67e-68 | 233 |
| Msa0874610 | AT5G38990.1 | 36.552 | 435 | 248 | 17 | 4 | 427 | 1 | 418 | 5.40e-63 | 219 |
| Msa0874610 | AT5G39020.1 | 36.010 | 411 | 233 | 15 | 26 | 425 | 22 | 413 | 1.94e-62 | 216 |
| Msa0874610 | AT5G39030.1 | 34.515 | 423 | 244 | 15 | 11 | 420 | 5 | 407 | 7.10e-57 | 201 |
| Msa0874610 | AT5G39030.2 | 35.135 | 407 | 231 | 15 | 27 | 420 | 15 | 401 | 2.66e-56 | 199 |
| Msa0874610 | AT5G28680.1 | 32.952 | 437 | 257 | 17 | 10 | 433 | 7 | 420 | 1.67e-52 | 189 |
| Msa0874610 | AT5G28680.2 | 32.952 | 437 | 257 | 17 | 10 | 433 | 7 | 420 | 1.67e-52 | 189 |
| Msa0874610 | AT3G04690.1 | 33.907 | 407 | 227 | 18 | 35 | 426 | 31 | 410 | 1.24e-51 | 186 |
| Msa0874610 | AT1G30570.1 | 27.465 | 426 | 260 | 19 | 7 | 412 | 9 | 405 | 3.46e-34 | 136 |
| Msa0874610 | AT5G59700.1 | 27.273 | 418 | 252 | 17 | 11 | 417 | 9 | 385 | 1.09e-30 | 125 |
| Msa0874610 | AT3G46290.1 | 28.369 | 423 | 241 | 20 | 7 | 413 | 6 | 382 | 4.57e-30 | 124 |
| Msa0874610 | AT4G00300.1 | 26.366 | 421 | 275 | 19 | 5 | 413 | 3 | 400 | 4.78e-28 | 116 |
| Msa0874610 | AT5G54380.1 | 27.896 | 423 | 269 | 17 | 8 | 423 | 5 | 398 | 1.43e-27 | 116 |
| Msa0874610 | AT5G61350.1 | 27.139 | 409 | 243 | 19 | 26 | 415 | 27 | 399 | 3.34e-26 | 112 |
| Msa0874610 | AT5G24010.1 | 26.905 | 420 | 271 | 18 | 13 | 422 | 10 | 403 | 1.72e-24 | 107 |
| Msa0874610 | AT2G21480.1 | 27.068 | 399 | 253 | 20 | 26 | 415 | 50 | 419 | 2.32e-24 | 106 |
| Msa0874610 | AT4G39110.1 | 26.044 | 407 | 247 | 20 | 26 | 415 | 51 | 420 | 4.32e-22 | 99.8 |
| Msa0874610 | AT2G39360.1 | 29.532 | 342 | 187 | 20 | 4 | 330 | 1 | 303 | 1.45e-18 | 89.0 |
| Msa0874610 | AT2G23200.1 | 26.667 | 360 | 200 | 14 | 7 | 346 | 13 | 328 | 5.15e-17 | 84.3 |
Find 100 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGAAATTCTAATAATTA+TGG | 0.216412 | 6_1:-10402150 | Msa0874610:CDS |
| TTATTATTACTTTCACTCTT+TGG | 0.256371 | 6_1:+10400647 | None:intergenic |
| TGATGTTGGTGTTCTTAAAT+AGG | 0.277271 | 6_1:+10401009 | None:intergenic |
| AAATGGTTTCACACTTCTTA+AGG | 0.289321 | 6_1:-10402283 | Msa0874610:CDS |
| GTATAAGAGGGTGATGATTA+TGG | 0.300832 | 6_1:+10402641 | None:intergenic |
| AGATGATGATAAGGTTTCTT+TGG | 0.312830 | 6_1:+10402776 | None:intergenic |
| TTCTTCTCTTTAACCGGATC+TGG | 0.322529 | 6_1:+10400503 | None:intergenic |
| TGGGAATTCCCCGTTGATTC+CGG | 0.334209 | 6_1:-10400848 | Msa0874610:CDS |
| AAAATTCAAATGCATGCTTA+TGG | 0.358421 | 6_1:-10400608 | Msa0874610:CDS |
| GTCTTGTTAACGAGTGTTCC+CGG | 0.368203 | 6_1:-10400214 | Msa0874610:CDS |
| ACACAGGCATGCTCAGAAAC+TGG | 0.368764 | 6_1:-10401048 | Msa0874610:CDS |
| TTATTAGAATTTCCACTACT+TGG | 0.372361 | 6_1:+10402156 | None:intergenic |
| AACCTCAATTGTGGCACAAC+AGG | 0.373259 | 6_1:-10402567 | Msa0874610:CDS |
| CCGGCTTCACTTACTTTGTC+AGG | 0.373297 | 6_1:-10400829 | Msa0874610:CDS |
| GATAAACGAGCTGATGAATA+TGG | 0.387933 | 6_1:+10402429 | None:intergenic |
| ATGCCTGTGTCTTGAATGTT+TGG | 0.390086 | 6_1:+10401061 | None:intergenic |
| GATGATTTGAAGAGGTCTTT+TGG | 0.390439 | 6_1:+10400920 | None:intergenic |
| CACATTTCCTTGTAGATAAA+CGG | 0.392473 | 6_1:+10400751 | None:intergenic |
| CAACGGGGAATTCCCATGTT+AGG | 0.394703 | 6_1:+10400855 | None:intergenic |
| AAACCGTTGGTATAAGTAGT+AGG | 0.406261 | 6_1:+10402339 | None:intergenic |
| AAATGGACACAAAATCAAAA+AGG | 0.416019 | 6_1:-10400704 | Msa0874610:CDS |
| AAGTCGACCCGAACATAACT+AGG | 0.416722 | 6_1:-10400793 | Msa0874610:CDS |
| GGGAGGTGGAAAAGTATAAG+AGG | 0.417418 | 6_1:+10402628 | None:intergenic |
| GGTGTATAGTATAGATCATC+AGG | 0.423919 | 6_1:+10402096 | None:intergenic |
| GTTGTTTCGAAGAATCTTGC+TGG | 0.427185 | 6_1:-10400533 | Msa0874610:CDS |
| GGCTTGAGAATGTAGAGAAA+GGG | 0.431514 | 6_1:+10402797 | None:intergenic |
| TTGAGGTTAAAACGGTCAAT+TGG | 0.438656 | 6_1:+10402582 | None:intergenic |
| CGTAGGCTTGAAGGTGTAAG+AGG | 0.448967 | 6_1:+10402607 | None:intergenic |
| TCGCCCGCCCTAGTTATGTT+CGG | 0.457975 | 6_1:+10400785 | None:intergenic |
| CAATTGGTTCGTAGGCTTGA+AGG | 0.460075 | 6_1:+10402598 | None:intergenic |
| TAAGTGAAGCCGGAATCAAC+GGG | 0.460354 | 6_1:+10400839 | None:intergenic |
| TCGGGTCGACTTCACAGAAA+TGG | 0.462203 | 6_1:+10400804 | None:intergenic |
| AAAGAATATGTTATTAACGT+TGG | 0.468220 | 6_1:-10402210 | Msa0874610:CDS |
| TGTGAAACCATTTGAAATAA+CGG | 0.472819 | 6_1:+10402293 | None:intergenic |
| CGCCCGCCCTAGTTATGTTC+GGG | 0.483405 | 6_1:+10400786 | None:intergenic |
| TCATTAAACGCTGATGTTGA+AGG | 0.490768 | 6_1:-10402249 | Msa0874610:CDS |
| TATACACCACTTGAGGATCC+TGG | 0.494000 | 6_1:-10402081 | Msa0874610:CDS |
| ATTGTGCATAAATAGGAAAA+GGG | 0.494058 | 6_1:-10400236 | Msa0874610:intron |
| TTGGAACAGAAACTGTTGTT+GGG | 0.496846 | 6_1:+10402472 | None:intergenic |
| GTAAGTGAAGCCGGAATCAA+CGG | 0.498929 | 6_1:+10400838 | None:intergenic |
| GTCTTCACCGTTTATCTACA+AGG | 0.504270 | 6_1:-10400758 | Msa0874610:CDS |
| TGCCACAATTGAGGTTAAAA+CGG | 0.504648 | 6_1:+10402574 | None:intergenic |
| GCAGATTACAGAATCAAAGT+TGG | 0.505870 | 6_1:-10401100 | Msa0874610:intron |
| TTCCTGTTGTGCCACAATTG+AGG | 0.506771 | 6_1:+10402565 | None:intergenic |
| TGCTGGAGCGAATCCAGATC+CGG | 0.507205 | 6_1:-10400516 | Msa0874610:intron |
| ATCATAACGGTTAAAACCGT+TGG | 0.507788 | 6_1:+10402326 | None:intergenic |
| AAAATGCTTAAAGAGTTTCC+CGG | 0.508755 | 6_1:+10400195 | None:intergenic |
| TGGCTTGAGAATGTAGAGAA+AGG | 0.509041 | 6_1:+10402796 | None:intergenic |
| AAAACGGTCAATTGGTTCGT+AGG | 0.516426 | 6_1:+10402590 | None:intergenic |
| ACCAGTCTCTAGTGCAACAC+TGG | 0.521902 | 6_1:+10402011 | None:intergenic |
| TTAACGTTGGTGATGATCAA+AGG | 0.525996 | 6_1:-10402197 | Msa0874610:CDS |
| ACCAGTGTTGCACTAGAGAC+TGG | 0.528806 | 6_1:-10402012 | Msa0874610:intron |
| TGTCCATGTTCTTTGTCCGT+CGG | 0.529392 | 6_1:+10402536 | None:intergenic |
| TTCGTCCTAGCAGACATATC+AGG | 0.531061 | 6_1:-10400980 | Msa0874610:CDS |
| TTCAAATCATCACGTGACTT+AGG | 0.533902 | 6_1:-10400908 | Msa0874610:CDS |
| TACCCTACTACTTATACCAA+CGG | 0.537022 | 6_1:-10402342 | Msa0874610:CDS |
| GACGGACAAAGAACATGGAC+AGG | 0.537852 | 6_1:-10402534 | Msa0874610:CDS |
| TATTCTTTACCCGTCAGTAC+AGG | 0.538429 | 6_1:-10402390 | Msa0874610:CDS |
| TTTGGAACAGAAACTGTTGT+TGG | 0.539942 | 6_1:+10402471 | None:intergenic |
| ATGTGATGAAGATGATGATA+AGG | 0.540409 | 6_1:+10402767 | None:intergenic |
| GACCCGAACATAACTAGGGC+GGG | 0.541718 | 6_1:-10400788 | Msa0874610:CDS |
| ACAGACTCTTGAACCTAACA+TGG | 0.543201 | 6_1:-10400868 | Msa0874610:CDS |
| GAGTCTGTTGAGAGTAGCAT+TGG | 0.544374 | 6_1:+10400883 | None:intergenic |
| CCTGACAAAGTAAGTGAAGC+CGG | 0.545307 | 6_1:+10400829 | None:intergenic |
| ATGCATGCTTATGGTGGTAA+TGG | 0.545332 | 6_1:-10400599 | Msa0874610:CDS |
| AACCGTTGGTATAAGTAGTA+GGG | 0.547927 | 6_1:+10402340 | None:intergenic |
| GTCTCTAGTGCAACACTGGT+TGG | 0.548580 | 6_1:+10402015 | None:intergenic |
| TCTTGTTAACGAGTGTTCCC+GGG | 0.550693 | 6_1:-10400213 | Msa0874610:CDS |
| TTGAAGGTGTAAGAGGGAGG+TGG | 0.551545 | 6_1:+10402614 | None:intergenic |
| TTGAGAATGTAGAGAAAGGG+GGG | 0.552170 | 6_1:+10402800 | None:intergenic |
| AAATGCTTAAAGAGTTTCCC+GGG | 0.557329 | 6_1:+10400196 | None:intergenic |
| GGAGGTGGAAAAGTATAAGA+GGG | 0.563249 | 6_1:+10402629 | None:intergenic |
| CTGGTTGGAATAGTATATGC+TGG | 0.566960 | 6_1:+10402030 | None:intergenic |
| GCTTGAGAATGTAGAGAAAG+GGG | 0.567517 | 6_1:+10402798 | None:intergenic |
| CTACCGACGGACAAAGAACA+TGG | 0.572671 | 6_1:-10402539 | Msa0874610:CDS |
| GTTGATGAGTGTGTGTGTGG+TGG | 0.578552 | 6_1:+10402706 | None:intergenic |
| AATAGTATATGCTGGTATGA+TGG | 0.580915 | 6_1:+10402038 | None:intergenic |
| CTTGTTGATGAGTGTGTGTG+TGG | 0.590114 | 6_1:+10402703 | None:intergenic |
| TCGTACCTGATATGTCTGCT+AGG | 0.592628 | 6_1:+10400975 | None:intergenic |
| GACCCCACAAGTGAAAATCC+AGG | 0.594772 | 6_1:+10402063 | None:intergenic |
| CGTTTATCTACAAGGAAATG+TGG | 0.603064 | 6_1:-10400750 | Msa0874610:CDS |
| GAATTTAGGACCTGTACTGA+CGG | 0.605805 | 6_1:+10402380 | None:intergenic |
| ATTCAAATGCATGCTTATGG+TGG | 0.617292 | 6_1:-10400605 | Msa0874610:CDS |
| AATTTAGGACCTGTACTGAC+GGG | 0.621399 | 6_1:+10402381 | None:intergenic |
| CTTGAGAATGTAGAGAAAGG+GGG | 0.621792 | 6_1:+10402799 | None:intergenic |
| AGGACGAAGTCACGTGATGT+TGG | 0.623751 | 6_1:+10400995 | None:intergenic |
| ATAGTATAGATCATCAGGCA+TGG | 0.630000 | 6_1:+10402101 | None:intergenic |
| AGTCACGTGATGATTTGAAG+AGG | 0.633979 | 6_1:+10400912 | None:intergenic |
| TCTATACTATACACCACTTG+AGG | 0.639239 | 6_1:-10402088 | Msa0874610:CDS |
| AGTATATGCTGGTATGATGG+TGG | 0.641458 | 6_1:+10402041 | None:intergenic |
| GAAAATCCAGGATCCTCAAG+TGG | 0.646180 | 6_1:+10402075 | None:intergenic |
| GTAGGCTTGAAGGTGTAAGA+GGG | 0.650988 | 6_1:+10402608 | None:intergenic |
| ACAACAGGAAACTCTACCGA+CGG | 0.654858 | 6_1:-10402552 | Msa0874610:CDS |
| TCACCAAACATTCAAGACAC+AGG | 0.655864 | 6_1:-10401064 | Msa0874610:CDS |
| GGCTTGAAGGTGTAAGAGGG+AGG | 0.658222 | 6_1:+10402611 | None:intergenic |
| CAGACTCTTGAACCTAACAT+GGG | 0.666017 | 6_1:-10400867 | Msa0874610:CDS |
| AGTCGACCCGAACATAACTA+GGG | 0.671905 | 6_1:-10400792 | Msa0874610:CDS |
| CGACCCGAACATAACTAGGG+CGG | 0.687720 | 6_1:-10400789 | Msa0874610:CDS |
| TAGCAGACATATCAGGTACG+AGG | 0.749651 | 6_1:-10400973 | Msa0874610:CDS |
| AAGTGAAGCCGGAATCAACG+GGG | 0.756543 | 6_1:+10400840 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTATGGTTTTATTAA+TGG | - | chr6_1:10400879-10400898 | Msa0874610:CDS | 10.0% |
| !!! | CAAAATTCAATTAAAATTTT+TGG | + | chr6_1:10401342-10401361 | None:intergenic | 10.0% |
| !!! | AATTATTTCTATTATTATAG+TGG | + | chr6_1:10402575-10402594 | None:intergenic | 10.0% |
| !! | ATTCTATATATTAAATAATG+AGG | - | chr6_1:10402604-10402623 | Msa0874610:CDS | 10.0% |
| !!! | TAATCCTTGATTTTTATTAT+TGG | + | chr6_1:10401367-10401386 | None:intergenic | 15.0% |
| !!! | TATATATTGTTATTGTTTGT+TGG | - | chr6_1:10401544-10401563 | Msa0874610:intron | 15.0% |
| !!! | TATATGTTTTTAGGATTTAA+AGG | + | chr6_1:10401807-10401826 | None:intergenic | 15.0% |
| !!! | TCTTTTACTTGATTAATTTT+TGG | - | chr6_1:10402629-10402648 | Msa0874610:CDS | 15.0% |
| !!! | TTTTTTACCGTTATTTCAAA+TGG | - | chr6_1:10400717-10400736 | Msa0874610:CDS | 20.0% |
| !! | AAAGAATATGTTATTAACGT+TGG | - | chr6_1:10400807-10400826 | Msa0874610:CDS | 20.0% |
| !! | AGTGGAAATTCTAATAATTA+TGG | - | chr6_1:10400867-10400886 | Msa0874610:CDS | 20.0% |
| !! | TGATCCAATAATAAAAATCA+AGG | - | chr6_1:10401360-10401379 | Msa0874610:intron | 20.0% |
| !! | ATTAGCTAGATTAATGATTA+TGG | - | chr6_1:10401433-10401452 | Msa0874610:intron | 20.0% |
| !!! | AAGTTTTATAATTGTATGCA+TGG | - | chr6_1:10401644-10401663 | Msa0874610:intron | 20.0% |
| !! | GTATGAATAAGTGAAAATTA+CGG | - | chr6_1:10401710-10401729 | Msa0874610:intron | 20.0% |
| !! | TATGAATAAGTGAAAATTAC+GGG | - | chr6_1:10401711-10401730 | Msa0874610:intron | 20.0% |
| !! | ATATATAATAGGATGACATT+AGG | + | chr6_1:10401830-10401849 | None:intergenic | 20.0% |
| !! | AATGTCATCCTATTATATAT+TGG | - | chr6_1:10401830-10401849 | Msa0874610:intron | 20.0% |
| !! | TTATTATTACTTTCACTCTT+TGG | + | chr6_1:10402373-10402392 | None:intergenic | 20.0% |
| !! | TTTCTAATCCGTTTAAAAAT+GGG | + | chr6_1:10402447-10402466 | None:intergenic | 20.0% |
| !! | ATTTCTAATCCGTTTAAAAA+TGG | + | chr6_1:10402448-10402467 | None:intergenic | 20.0% |
| !!! | TTTTTGGAAACAAAAACAAA+TGG | - | chr6_1:10402645-10402664 | Msa0874610:CDS | 20.0% |
| !! | AATATTATGAATGCTTTAGT+GGG | + | chr6_1:10402674-10402693 | None:intergenic | 20.0% |
| !! | AAATATTATGAATGCTTTAG+TGG | + | chr6_1:10402675-10402694 | None:intergenic | 20.0% |
| !!! | ATGGTTTTGAAGTTTATCAA+TGG | + | chr6_1:10400360-10400379 | None:intergenic | 25.0% |
| !!! | ACTTTGTTTTGTGTTGTTTT+TGG | + | chr6_1:10400567-10400586 | None:intergenic | 25.0% |
| !! | TGTGAAACCATTTGAAATAA+CGG | + | chr6_1:10400727-10400746 | None:intergenic | 25.0% |
| ! | TTATTAGAATTTCCACTACT+TGG | + | chr6_1:10400864-10400883 | None:intergenic | 25.0% |
| !!! | AAGGAGTTGACATATTTTTT+GGG | + | chr6_1:10401282-10401301 | None:intergenic | 25.0% |
| !!! | TAAGGAGTTGACATATTTTT+TGG | + | chr6_1:10401283-10401302 | None:intergenic | 25.0% |
| ! | TTGTTTAAACATATCTCCTT+AGG | + | chr6_1:10401584-10401603 | None:intergenic | 25.0% |
| !! | GACATTAGGTATATGTTTTT+AGG | + | chr6_1:10401816-10401835 | None:intergenic | 25.0% |
| ! | GAATGCAACCAATATATAAT+AGG | + | chr6_1:10401841-10401860 | None:intergenic | 25.0% |
| ! | AAATGGACACAAAATCAAAA+AGG | - | chr6_1:10402313-10402332 | Msa0874610:CDS | 25.0% |
| ! | AAAATTCAAATGCATGCTTA+TGG | - | chr6_1:10402409-10402428 | Msa0874610:CDS | 25.0% |
| ! | ATATTATGAATGCTTTAGTG+GGG | + | chr6_1:10402673-10402692 | None:intergenic | 25.0% |
| !! | ATTCATAATATTTTGTCACG+TGG | - | chr6_1:10402682-10402701 | Msa0874610:exon | 25.0% |
| !! | ATTATGTTATTGGTCTCTAA+AGG | + | chr6_1:10402712-10402731 | None:intergenic | 25.0% |
| ! | TTAGAGACCAATAACATAAT+TGG | - | chr6_1:10402712-10402731 | Msa0874610:five_prime_UTR | 25.0% |
| ! | AAGTTTGATTGTGCATAAAT+AGG | - | chr6_1:10402774-10402793 | Msa0874610:five_prime_UTR | 25.0% |
| ! | ATTGTGCATAAATAGGAAAA+GGG | - | chr6_1:10402781-10402800 | Msa0874610:five_prime_UTR | 25.0% |
| AGATGATGATAAGGTTTCTT+TGG | + | chr6_1:10400244-10400263 | None:intergenic | 30.0% | |
| ATGTGATGAAGATGATGATA+AGG | + | chr6_1:10400253-10400272 | None:intergenic | 30.0% | |
| !! | CGGTAAAAAAAGCATCATAA+CGG | + | chr6_1:10400707-10400726 | None:intergenic | 30.0% |
| AAATGGTTTCACACTTCTTA+AGG | - | chr6_1:10400734-10400753 | Msa0874610:CDS | 30.0% | |
| !!! | TTGAGTTTTATTCCAAGTAG+TGG | - | chr6_1:10400849-10400868 | Msa0874610:CDS | 30.0% |
| AATAGTATATGCTGGTATGA+TGG | + | chr6_1:10400982-10401001 | None:intergenic | 30.0% | |
| TATGTGTCTTTATATGCCAT+CGG | - | chr6_1:10401129-10401148 | Msa0874610:intron | 30.0% | |
| ! | TAGTAGGATGTTTGTTAGTA+AGG | + | chr6_1:10401301-10401320 | None:intergenic | 30.0% |
| TTTGATTCTGTAATCTGCAA+TGG | + | chr6_1:10401915-10401934 | None:intergenic | 30.0% | |
| ! | TGATGTTGGTGTTCTTAAAT+AGG | + | chr6_1:10402011-10402030 | None:intergenic | 30.0% |
| CACATTTCCTTGTAGATAAA+CGG | + | chr6_1:10402269-10402288 | None:intergenic | 30.0% | |
| !!! | AACAAGCTGATGTTTTGAAA+TGG | - | chr6_1:10402296-10402315 | Msa0874610:CDS | 30.0% |
| ! | AAGCATGCATTTGAATTTTG+AGG | + | chr6_1:10402408-10402427 | None:intergenic | 30.0% |
| !! | AATGGTGACCCATTTTTAAA+CGG | - | chr6_1:10402436-10402455 | Msa0874610:CDS | 30.0% |
| GTCTCAACCAATTATGTTAT+TGG | + | chr6_1:10402722-10402741 | None:intergenic | 30.0% | |
| ACATAATTGGTTGAGACAAA+TGG | - | chr6_1:10402725-10402744 | Msa0874610:five_prime_UTR | 30.0% | |
| CTTGATCTTAAAATCACTAC+AGG | + | chr6_1:10402752-10402771 | None:intergenic | 30.0% | |
| !!! | CTGTAGTGATTTTAAGATCA+AGG | - | chr6_1:10402750-10402769 | Msa0874610:five_prime_UTR | 30.0% |
| GATTGTGCATAAATAGGAAA+AGG | - | chr6_1:10402780-10402799 | Msa0874610:five_prime_UTR | 30.0% | |
| GTATAAGAGGGTGATGATTA+TGG | + | chr6_1:10400379-10400398 | None:intergenic | 35.0% | |
| TTGAGGTTAAAACGGTCAAT+TGG | + | chr6_1:10400438-10400457 | None:intergenic | 35.0% | |
| TGCCACAATTGAGGTTAAAA+CGG | + | chr6_1:10400446-10400465 | None:intergenic | 35.0% | |
| TTGGAACAGAAACTGTTGTT+GGG | + | chr6_1:10400548-10400567 | None:intergenic | 35.0% | |
| ! | TTTGGAACAGAAACTGTTGT+TGG | + | chr6_1:10400549-10400568 | None:intergenic | 35.0% |
| GATAAACGAGCTGATGAATA+TGG | + | chr6_1:10400591-10400610 | None:intergenic | 35.0% | |
| AAAAACAGACGGAGGAATTT+AGG | + | chr6_1:10400654-10400673 | None:intergenic | 35.0% | |
| TAGTAGGGTAGAAAAACAGA+CGG | + | chr6_1:10400665-10400684 | None:intergenic | 35.0% | |
| TACCCTACTACTTATACCAA+CGG | - | chr6_1:10400675-10400694 | Msa0874610:CDS | 35.0% | |
| AACCGTTGGTATAAGTAGTA+GGG | + | chr6_1:10400680-10400699 | None:intergenic | 35.0% | |
| AAACCGTTGGTATAAGTAGT+AGG | + | chr6_1:10400681-10400700 | None:intergenic | 35.0% | |
| ATCATAACGGTTAAAACCGT+TGG | + | chr6_1:10400694-10400713 | None:intergenic | 35.0% | |
| TCATTAAACGCTGATGTTGA+AGG | - | chr6_1:10400768-10400787 | Msa0874610:CDS | 35.0% | |
| !! | TTAACGTTGGTGATGATCAA+AGG | - | chr6_1:10400820-10400839 | Msa0874610:CDS | 35.0% |
| ATAGTATAGATCATCAGGCA+TGG | + | chr6_1:10400919-10400938 | None:intergenic | 35.0% | |
| GGTGTATAGTATAGATCATC+AGG | + | chr6_1:10400924-10400943 | None:intergenic | 35.0% | |
| TCTATACTATACACCACTTG+AGG | - | chr6_1:10400929-10400948 | Msa0874610:CDS | 35.0% | |
| ATGTGTCTTTATATGCCATC+GGG | - | chr6_1:10401130-10401149 | Msa0874610:intron | 35.0% | |
| GATACACACATTCATCTAGT+AGG | + | chr6_1:10401317-10401336 | None:intergenic | 35.0% | |
| GGTTCATGATAACTAACCTA+AGG | - | chr6_1:10401565-10401584 | Msa0874610:intron | 35.0% | |
| AACTAAGTTGTACGCACAAA+TGG | - | chr6_1:10401777-10401796 | Msa0874610:intron | 35.0% | |
| GCAGATTACAGAATCAAAGT+TGG | - | chr6_1:10401917-10401936 | Msa0874610:intron | 35.0% | |
| !!! | TCTTTTGGTGCTATGTAATC+GGG | + | chr6_1:10402085-10402104 | None:intergenic | 35.0% |
| !!! | GTCTTTTGGTGCTATGTAAT+CGG | + | chr6_1:10402086-10402105 | None:intergenic | 35.0% |
| ! | GATGATTTGAAGAGGTCTTT+TGG | + | chr6_1:10402100-10402119 | None:intergenic | 35.0% |
| TTCAAATCATCACGTGACTT+AGG | - | chr6_1:10402109-10402128 | Msa0874610:CDS | 35.0% | |
| CGTTTATCTACAAGGAAATG+TGG | - | chr6_1:10402267-10402286 | Msa0874610:CDS | 35.0% | |
| ATTCAAATGCATGCTTATGG+TGG | - | chr6_1:10402412-10402431 | Msa0874610:CDS | 35.0% | |
| CCACTATTCTTCTCTTTAAC+CGG | + | chr6_1:10402523-10402542 | None:intergenic | 35.0% | |
| TTGAGAATGTAGAGAAAGGG+GGG | + | chr6_1:10400220-10400239 | None:intergenic | 40.0% | |
| CTTGAGAATGTAGAGAAAGG+GGG | + | chr6_1:10400221-10400240 | None:intergenic | 40.0% | |
| GCTTGAGAATGTAGAGAAAG+GGG | + | chr6_1:10400222-10400241 | None:intergenic | 40.0% | |
| GGCTTGAGAATGTAGAGAAA+GGG | + | chr6_1:10400223-10400242 | None:intergenic | 40.0% | |
| TGGCTTGAGAATGTAGAGAA+AGG | + | chr6_1:10400224-10400243 | None:intergenic | 40.0% | |
| ! | GGAGGTGGAAAAGTATAAGA+GGG | + | chr6_1:10400391-10400410 | None:intergenic | 40.0% |
| !! | AAAACGGTCAATTGGTTCGT+AGG | + | chr6_1:10400430-10400449 | None:intergenic | 40.0% |
| !! | GACCGTTTTAACCTCAATTG+TGG | - | chr6_1:10400441-10400460 | Msa0874610:intron | 40.0% |
| TATTCTTTACCCGTCAGTAC+AGG | - | chr6_1:10400627-10400646 | Msa0874610:CDS | 40.0% | |
| ! | AATTTAGGACCTGTACTGAC+GGG | + | chr6_1:10400639-10400658 | None:intergenic | 40.0% |
| ! | GAATTTAGGACCTGTACTGA+CGG | + | chr6_1:10400640-10400659 | None:intergenic | 40.0% |
| ! | GATCCTGGATTTTCACTTGT+GGG | - | chr6_1:10400951-10400970 | Msa0874610:CDS | 40.0% |
| ! | ATCCTGGATTTTCACTTGTG+GGG | - | chr6_1:10400952-10400971 | Msa0874610:CDS | 40.0% |
| AGTATATGCTGGTATGATGG+TGG | + | chr6_1:10400979-10400998 | None:intergenic | 40.0% | |
| CTGGTTGGAATAGTATATGC+TGG | + | chr6_1:10400990-10401009 | None:intergenic | 40.0% | |
| TCACCAAACATTCAAGACAC+AGG | - | chr6_1:10401953-10401972 | Msa0874610:intron | 40.0% | |
| ATGCCTGTGTCTTGAATGTT+TGG | + | chr6_1:10401959-10401978 | None:intergenic | 40.0% | |
| AGTCACGTGATGATTTGAAG+AGG | + | chr6_1:10402108-10402127 | None:intergenic | 40.0% | |
| ACAGACTCTTGAACCTAACA+TGG | - | chr6_1:10402149-10402168 | Msa0874610:CDS | 40.0% | |
| CAGACTCTTGAACCTAACAT+GGG | - | chr6_1:10402150-10402169 | Msa0874610:CDS | 40.0% | |
| GTCTTCACCGTTTATCTACA+AGG | - | chr6_1:10402259-10402278 | Msa0874610:CDS | 40.0% | |
| ATGCATGCTTATGGTGGTAA+TGG | - | chr6_1:10402418-10402437 | Msa0874610:CDS | 40.0% | |
| ! | GTTGTTTCGAAGAATCTTGC+TGG | - | chr6_1:10402484-10402503 | Msa0874610:CDS | 40.0% |
| TTCTTCTCTTTAACCGGATC+TGG | + | chr6_1:10402517-10402536 | None:intergenic | 40.0% | |
| CCGGTTAAAGAGAAGAATAG+TGG | - | chr6_1:10402520-10402539 | Msa0874610:CDS | 40.0% | |
| ! | CTTGTTGATGAGTGTGTGTG+TGG | + | chr6_1:10400317-10400336 | None:intergenic | 45.0% |
| ! | GGGAGGTGGAAAAGTATAAG+AGG | + | chr6_1:10400392-10400411 | None:intergenic | 45.0% |
| ! | GTAGGCTTGAAGGTGTAAGA+GGG | + | chr6_1:10400412-10400431 | None:intergenic | 45.0% |
| !! | CAATTGGTTCGTAGGCTTGA+AGG | + | chr6_1:10400422-10400441 | None:intergenic | 45.0% |
| AACCTCAATTGTGGCACAAC+AGG | - | chr6_1:10400450-10400469 | Msa0874610:intron | 45.0% | |
| TTCCTGTTGTGCCACAATTG+AGG | + | chr6_1:10400455-10400474 | None:intergenic | 45.0% | |
| ACAACAGGAAACTCTACCGA+CGG | - | chr6_1:10400465-10400484 | Msa0874610:intron | 45.0% | |
| TGTCCATGTTCTTTGTCCGT+CGG | + | chr6_1:10400484-10400503 | None:intergenic | 45.0% | |
| TAGGGTAGAAAAACAGACGG+AGG | + | chr6_1:10400662-10400681 | None:intergenic | 45.0% | |
| TATACACCACTTGAGGATCC+TGG | - | chr6_1:10400936-10400955 | Msa0874610:CDS | 45.0% | |
| GAAAATCCAGGATCCTCAAG+TGG | + | chr6_1:10400945-10400964 | None:intergenic | 45.0% | |
| ! | GGATCCTGGATTTTCACTTG+TGG | - | chr6_1:10400950-10400969 | Msa0874610:CDS | 45.0% |
| GTGTCTTAACATGTACCCGA+TGG | + | chr6_1:10401148-10401167 | None:intergenic | 45.0% | |
| TTCGTCCTAGCAGACATATC+AGG | - | chr6_1:10402037-10402056 | Msa0874610:CDS | 45.0% | |
| TCGTACCTGATATGTCTGCT+AGG | + | chr6_1:10402045-10402064 | None:intergenic | 45.0% | |
| TAGCAGACATATCAGGTACG+AGG | - | chr6_1:10402044-10402063 | Msa0874610:CDS | 45.0% | |
| GAGTCTGTTGAGAGTAGCAT+TGG | + | chr6_1:10402137-10402156 | None:intergenic | 45.0% | |
| TAAGTGAAGCCGGAATCAAC+GGG | + | chr6_1:10402181-10402200 | None:intergenic | 45.0% | |
| GTAAGTGAAGCCGGAATCAA+CGG | + | chr6_1:10402182-10402201 | None:intergenic | 45.0% | |
| CCTGACAAAGTAAGTGAAGC+CGG | + | chr6_1:10402191-10402210 | None:intergenic | 45.0% | |
| AAGTCGACCCGAACATAACT+AGG | - | chr6_1:10402224-10402243 | Msa0874610:CDS | 45.0% | |
| AGTCGACCCGAACATAACTA+GGG | - | chr6_1:10402225-10402244 | Msa0874610:CDS | 45.0% | |
| ! | GTCTTGTTAACGAGTGTTCC+CGG | - | chr6_1:10402803-10402822 | Msa0874610:five_prime_UTR | 45.0% |
| TCTTGTTAACGAGTGTTCCC+GGG | - | chr6_1:10402804-10402823 | Msa0874610:five_prime_UTR | 45.0% | |
| GAGAAAGGGGGGAAGTTCTT+AGG | + | chr6_1:10400209-10400228 | None:intergenic | 50.0% | |
| ! | GTTGATGAGTGTGTGTGTGG+TGG | + | chr6_1:10400314-10400333 | None:intergenic | 50.0% |
| ! | TTGAAGGTGTAAGAGGGAGG+TGG | + | chr6_1:10400406-10400425 | None:intergenic | 50.0% |
| ! | CGTAGGCTTGAAGGTGTAAG+AGG | + | chr6_1:10400413-10400432 | None:intergenic | 50.0% |
| CTACCGACGGACAAAGAACA+TGG | - | chr6_1:10400478-10400497 | Msa0874610:intron | 50.0% | |
| GACGGACAAAGAACATGGAC+AGG | - | chr6_1:10400483-10400502 | Msa0874610:intron | 50.0% | |
| GACCCCACAAGTGAAAATCC+AGG | + | chr6_1:10400957-10400976 | None:intergenic | 50.0% | |
| GTCTCTAGTGCAACACTGGT+TGG | + | chr6_1:10401005-10401024 | None:intergenic | 50.0% | |
| ACCAGTGTTGCACTAGAGAC+TGG | - | chr6_1:10401005-10401024 | Msa0874610:CDS | 50.0% | |
| ACCAGTCTCTAGTGCAACAC+TGG | + | chr6_1:10401009-10401028 | None:intergenic | 50.0% | |
| ACACAGGCATGCTCAGAAAC+TGG | - | chr6_1:10401969-10401988 | Msa0874610:intron | 50.0% | |
| AGGACGAAGTCACGTGATGT+TGG | + | chr6_1:10402025-10402044 | None:intergenic | 50.0% | |
| CAACGGGGAATTCCCATGTT+AGG | + | chr6_1:10402165-10402184 | None:intergenic | 50.0% | |
| !! | TGGGAATTCCCCGTTGATTC+CGG | - | chr6_1:10402169-10402188 | Msa0874610:CDS | 50.0% |
| AAGTGAAGCCGGAATCAACG+GGG | + | chr6_1:10402180-10402199 | None:intergenic | 50.0% | |
| CCGGCTTCACTTACTTTGTC+AGG | - | chr6_1:10402188-10402207 | Msa0874610:CDS | 50.0% | |
| ! | TCGGGTCGACTTCACAGAAA+TGG | + | chr6_1:10402216-10402235 | None:intergenic | 50.0% |
| ! | GGCTTGAAGGTGTAAGAGGG+AGG | + | chr6_1:10400409-10400428 | None:intergenic | 55.0% |
| CGACCCGAACATAACTAGGG+CGG | - | chr6_1:10402228-10402247 | Msa0874610:CDS | 55.0% | |
| GACCCGAACATAACTAGGGC+GGG | - | chr6_1:10402229-10402248 | Msa0874610:CDS | 55.0% | |
| TCGCCCGCCCTAGTTATGTT+CGG | + | chr6_1:10402235-10402254 | None:intergenic | 55.0% | |
| TGCTGGAGCGAATCCAGATC+CGG | - | chr6_1:10402501-10402520 | Msa0874610:CDS | 55.0% | |
| CGCCCGCCCTAGTTATGTTC+GGG | + | chr6_1:10402234-10402253 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 10400202 | 10402837 | 10400202 | ID=Msa0874610;Name=Msa0874610 |
| chr6_1 | mRNA | 10400202 | 10402837 | 10400202 | ID=Msa0874610-mRNA-1;Parent=Msa0874610;Name=Msa0874610-mRNA-1;_AED=0.19;_eAED=0.19;_QI=149|0.5|0.33|0.66|1|1|3|0|439 |
| chr6_1 | exon | 10400202 | 10400243 | 10400202 | ID=Msa0874610-mRNA-1:exon:3237;Parent=Msa0874610-mRNA-1 |
| chr6_1 | exon | 10400517 | 10401118 | 10400517 | ID=Msa0874610-mRNA-1:exon:3236;Parent=Msa0874610-mRNA-1 |
| chr6_1 | exon | 10402013 | 10402837 | 10402013 | ID=Msa0874610-mRNA-1:exon:3235;Parent=Msa0874610-mRNA-1 |
| chr6_1 | five_prime_UTR | 10402689 | 10402837 | 10402689 | ID=Msa0874610-mRNA-1:five_prime_utr;Parent=Msa0874610-mRNA-1 |
| chr6_1 | CDS | 10402013 | 10402688 | 10402013 | ID=Msa0874610-mRNA-1:cds;Parent=Msa0874610-mRNA-1 |
| chr6_1 | CDS | 10400517 | 10401118 | 10400517 | ID=Msa0874610-mRNA-1:cds;Parent=Msa0874610-mRNA-1 |
| chr6_1 | CDS | 10400202 | 10400243 | 10400202 | ID=Msa0874610-mRNA-1:cds;Parent=Msa0874610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
