Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878990 | RHN50825.1 | 95.556 | 270 | 12 | 0 | 1 | 270 | 24 | 293 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878990 | sp|Q41638|XTHA_PHAAN | 88.519 | 270 | 30 | 1 | 1 | 270 | 1 | 269 | 1.44e-180 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878990 | A0A396HHV0 | 95.556 | 270 | 12 | 0 | 1 | 270 | 24 | 293 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0392480 | Msa0878990 | 0.803449 | 3.468351e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878990 | MtrunA17_Chr6g0461731 | 95.556 | 270 | 12 | 0 | 1 | 270 | 24 | 293 | 0.0 | 541 |
| Msa0878990 | MtrunA17_Chr6g0461761 | 93.704 | 270 | 17 | 0 | 1 | 270 | 1 | 270 | 0.0 | 533 |
| Msa0878990 | MtrunA17_Chr7g0252621 | 82.593 | 270 | 47 | 0 | 1 | 270 | 1 | 270 | 2.80e-172 | 477 |
| Msa0878990 | MtrunA17_Chr7g0252631 | 81.852 | 270 | 49 | 0 | 1 | 270 | 1 | 270 | 4.69e-171 | 474 |
| Msa0878990 | MtrunA17_Chr7g0252601 | 81.369 | 263 | 49 | 0 | 1 | 263 | 1 | 263 | 2.98e-166 | 462 |
| Msa0878990 | MtrunA17_Chr4g0072611 | 54.167 | 264 | 108 | 3 | 9 | 270 | 10 | 262 | 2.73e-93 | 277 |
| Msa0878990 | MtrunA17_Chr4g0023961 | 49.627 | 268 | 114 | 4 | 4 | 263 | 10 | 264 | 1.15e-91 | 273 |
| Msa0878990 | MtrunA17_Chr4g0054431 | 50.752 | 266 | 121 | 4 | 7 | 268 | 12 | 271 | 1.95e-90 | 270 |
| Msa0878990 | MtrunA17_Chr4g0054451 | 53.527 | 241 | 107 | 3 | 32 | 268 | 34 | 273 | 1.15e-89 | 268 |
| Msa0878990 | MtrunA17_Chr3g0122021 | 50.373 | 268 | 117 | 3 | 3 | 270 | 8 | 259 | 3.76e-88 | 264 |
| Msa0878990 | MtrunA17_Chr2g0323161 | 47.059 | 272 | 127 | 5 | 8 | 270 | 6 | 269 | 4.42e-88 | 264 |
| Msa0878990 | MtrunA17_Chr3g0122031 | 49.259 | 270 | 126 | 2 | 1 | 270 | 1 | 259 | 7.56e-88 | 263 |
| Msa0878990 | MtrunA17_Chr8g0377841 | 50.000 | 264 | 117 | 4 | 7 | 270 | 15 | 263 | 4.92e-87 | 261 |
| Msa0878990 | MtrunA17_Chr7g0258911 | 51.515 | 264 | 115 | 3 | 9 | 270 | 9 | 261 | 2.36e-86 | 259 |
| Msa0878990 | MtrunA17_Chr4g0072671 | 53.659 | 246 | 103 | 2 | 32 | 270 | 26 | 267 | 1.80e-85 | 257 |
| Msa0878990 | MtrunA17_Chr2g0299061 | 56.364 | 220 | 87 | 2 | 9 | 228 | 12 | 222 | 4.99e-82 | 248 |
| Msa0878990 | MtrunA17_Chr4g0072601 | 47.710 | 262 | 124 | 3 | 11 | 270 | 15 | 265 | 5.59e-82 | 248 |
| Msa0878990 | MtrunA17_Chr1g0206681 | 46.565 | 262 | 136 | 2 | 10 | 270 | 15 | 273 | 1.82e-81 | 247 |
| Msa0878990 | MtrunA17_Chr1g0206081 | 50.206 | 243 | 117 | 2 | 9 | 247 | 12 | 254 | 5.85e-81 | 246 |
| Msa0878990 | MtrunA17_Chr4g0071341 | 54.673 | 214 | 89 | 1 | 15 | 228 | 16 | 221 | 6.17e-80 | 243 |
| Msa0878990 | MtrunA17_Chr6g0486581 | 45.935 | 246 | 128 | 3 | 28 | 270 | 22 | 265 | 5.64e-79 | 240 |
| Msa0878990 | MtrunA17_Chr8g0389641 | 55.556 | 207 | 82 | 3 | 1 | 207 | 8 | 204 | 4.64e-76 | 232 |
| Msa0878990 | MtrunA17_Chr5g0443391 | 48.276 | 232 | 108 | 2 | 2 | 231 | 6 | 227 | 9.10e-71 | 219 |
| Msa0878990 | MtrunA17_Chr4g0072681 | 49.554 | 224 | 101 | 2 | 55 | 270 | 6 | 225 | 1.91e-70 | 217 |
| Msa0878990 | MtrunA17_Chr3g0096651 | 48.113 | 212 | 106 | 1 | 51 | 262 | 49 | 256 | 8.28e-68 | 212 |
| Msa0878990 | MtrunA17_Chr8g0340001 | 48.113 | 212 | 106 | 2 | 60 | 268 | 5 | 215 | 8.41e-68 | 210 |
| Msa0878990 | MtrunA17_Chr2g0303861 | 42.248 | 258 | 139 | 8 | 7 | 259 | 1 | 253 | 1.68e-59 | 191 |
| Msa0878990 | MtrunA17_Chr8g0390201 | 48.947 | 190 | 86 | 4 | 79 | 263 | 1 | 184 | 4.87e-59 | 187 |
| Msa0878990 | MtrunA17_Chr2g0303721 | 42.623 | 244 | 125 | 7 | 29 | 270 | 27 | 257 | 9.12e-58 | 186 |
| Msa0878990 | MtrunA17_Chr7g0235541 | 45.960 | 198 | 95 | 5 | 79 | 268 | 1 | 194 | 1.85e-52 | 170 |
| Msa0878990 | MtrunA17_Chr1g0161951 | 34.317 | 271 | 170 | 4 | 5 | 268 | 6 | 275 | 9.07e-51 | 169 |
| Msa0878990 | MtrunA17_Chr4g0028221 | 34.397 | 282 | 152 | 8 | 9 | 270 | 19 | 287 | 2.32e-50 | 167 |
| Msa0878990 | MtrunA17_Chr8g0375981 | 36.992 | 246 | 146 | 5 | 1 | 239 | 1 | 244 | 1.47e-49 | 166 |
| Msa0878990 | MtrunA17_Chr1g0180451 | 38.589 | 241 | 124 | 7 | 9 | 230 | 6 | 241 | 1.52e-49 | 165 |
| Msa0878990 | MtrunA17_Chr8g0382041 | 41.262 | 206 | 112 | 4 | 30 | 228 | 32 | 235 | 1.16e-48 | 164 |
| Msa0878990 | MtrunA17_Chr7g0264731 | 44.199 | 181 | 90 | 4 | 58 | 230 | 61 | 238 | 1.35e-48 | 163 |
| Msa0878990 | MtrunA17_Chr8g0365231 | 36.596 | 235 | 133 | 4 | 9 | 228 | 13 | 246 | 1.55e-48 | 163 |
| Msa0878990 | MtrunA17_Chr5g0410621 | 40.196 | 204 | 116 | 3 | 30 | 228 | 40 | 242 | 2.13e-48 | 164 |
| Msa0878990 | MtrunA17_Chr2g0327411 | 40.580 | 207 | 110 | 5 | 30 | 228 | 52 | 253 | 1.68e-47 | 160 |
| Msa0878990 | MtrunA17_Chr4g0072641 | 43.333 | 120 | 53 | 2 | 151 | 270 | 26 | 130 | 1.07e-25 | 99.4 |
| Msa0878990 | MtrunA17_Chr8g0374231 | 55.738 | 61 | 26 | 1 | 188 | 247 | 1 | 61 | 1.16e-16 | 73.9 |
| Msa0878990 | MtrunA17_Chr8g0350711 | 31.609 | 174 | 111 | 4 | 54 | 225 | 54 | 221 | 5.23e-14 | 69.7 |
| Msa0878990 | MtrunA17_Chr8g0390181 | 31.731 | 104 | 59 | 2 | 1 | 104 | 7 | 98 | 1.32e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878990 | AT5G13870.2 | 75.185 | 270 | 64 | 1 | 1 | 270 | 4 | 270 | 9.33e-158 | 441 |
| Msa0878990 | AT5G13870.1 | 75.185 | 270 | 64 | 1 | 1 | 270 | 4 | 270 | 9.33e-158 | 441 |
| Msa0878990 | AT5G13870.3 | 75.185 | 270 | 64 | 1 | 1 | 270 | 4 | 270 | 9.33e-158 | 441 |
| Msa0878990 | AT2G06850.1 | 73.408 | 267 | 64 | 2 | 1 | 263 | 3 | 266 | 6.63e-149 | 419 |
| Msa0878990 | AT2G06850.2 | 79.803 | 203 | 41 | 0 | 61 | 263 | 4 | 206 | 4.85e-126 | 358 |
| Msa0878990 | AT5G65730.1 | 50.958 | 261 | 121 | 3 | 4 | 263 | 12 | 266 | 2.29e-94 | 280 |
| Msa0878990 | AT3G23730.1 | 51.331 | 263 | 122 | 2 | 11 | 270 | 9 | 268 | 9.75e-94 | 278 |
| Msa0878990 | AT4G14130.1 | 50.936 | 267 | 117 | 3 | 7 | 270 | 11 | 266 | 2.43e-92 | 275 |
| Msa0878990 | AT5G57550.1 | 49.627 | 268 | 123 | 2 | 3 | 270 | 9 | 264 | 4.06e-89 | 266 |
| Msa0878990 | AT4G37800.1 | 49.624 | 266 | 130 | 3 | 1 | 263 | 1 | 265 | 4.27e-89 | 267 |
| Msa0878990 | AT4G03210.1 | 47.761 | 268 | 132 | 3 | 5 | 270 | 6 | 267 | 4.55e-88 | 264 |
| Msa0878990 | AT5G57560.1 | 49.077 | 271 | 120 | 3 | 6 | 270 | 5 | 263 | 7.60e-88 | 263 |
| Msa0878990 | AT4G25810.1 | 49.071 | 269 | 128 | 3 | 7 | 270 | 1 | 265 | 6.21e-85 | 256 |
| Msa0878990 | AT4G30270.1 | 50.189 | 265 | 106 | 4 | 9 | 270 | 6 | 247 | 1.30e-84 | 254 |
| Msa0878990 | AT4G13090.1 | 48.289 | 263 | 129 | 4 | 12 | 269 | 10 | 270 | 4.13e-83 | 251 |
| Msa0878990 | AT1G11545.1 | 51.837 | 245 | 108 | 4 | 9 | 247 | 19 | 259 | 1.69e-82 | 250 |
| Msa0878990 | AT5G57530.1 | 53.191 | 235 | 103 | 3 | 39 | 270 | 34 | 264 | 2.27e-82 | 249 |
| Msa0878990 | AT5G57540.1 | 52.066 | 242 | 109 | 3 | 32 | 270 | 26 | 263 | 5.47e-82 | 248 |
| Msa0878990 | AT2G18800.1 | 60.104 | 193 | 77 | 0 | 32 | 224 | 28 | 220 | 2.85e-81 | 247 |
| Msa0878990 | AT4G03210.2 | 53.365 | 208 | 95 | 1 | 65 | 270 | 32 | 239 | 6.71e-81 | 245 |
| Msa0878990 | AT2G14620.1 | 44.569 | 267 | 145 | 2 | 5 | 270 | 12 | 276 | 5.84e-80 | 244 |
| Msa0878990 | AT4G28850.1 | 46.429 | 252 | 129 | 4 | 15 | 262 | 12 | 261 | 7.57e-80 | 243 |
| Msa0878990 | AT3G25050.1 | 50.661 | 227 | 105 | 4 | 30 | 253 | 33 | 255 | 8.77e-77 | 235 |
| Msa0878990 | AT4G25820.1 | 60.215 | 186 | 74 | 0 | 39 | 224 | 37 | 222 | 2.34e-76 | 234 |
| Msa0878990 | AT4G13080.1 | 44.980 | 249 | 134 | 3 | 9 | 257 | 16 | 261 | 1.45e-75 | 232 |
| Msa0878990 | AT5G48070.1 | 45.455 | 264 | 138 | 3 | 8 | 270 | 5 | 263 | 9.16e-74 | 227 |
| Msa0878990 | AT2G14620.2 | 49.761 | 209 | 104 | 1 | 63 | 270 | 18 | 226 | 4.61e-73 | 224 |
| Msa0878990 | AT2G14620.3 | 50.249 | 201 | 99 | 1 | 71 | 270 | 15 | 215 | 2.60e-71 | 219 |
| Msa0878990 | AT1G65310.1 | 50.481 | 208 | 98 | 2 | 63 | 270 | 61 | 263 | 8.21e-69 | 215 |
| Msa0878990 | AT1G65310.2 | 50.481 | 208 | 98 | 2 | 63 | 270 | 83 | 285 | 8.58e-69 | 215 |
| Msa0878990 | AT4G30280.1 | 50.000 | 208 | 99 | 2 | 63 | 270 | 61 | 263 | 1.85e-68 | 214 |
| Msa0878990 | AT4G30290.1 | 50.000 | 222 | 106 | 2 | 49 | 270 | 42 | 258 | 2.15e-68 | 213 |
| Msa0878990 | AT3G44990.1 | 42.797 | 236 | 115 | 7 | 9 | 230 | 11 | 240 | 2.15e-55 | 181 |
| Msa0878990 | AT1G32170.1 | 38.865 | 229 | 127 | 4 | 5 | 228 | 12 | 232 | 3.74e-49 | 166 |
| Msa0878990 | AT1G14720.1 | 36.820 | 239 | 142 | 6 | 3 | 236 | 5 | 239 | 3.94e-47 | 160 |
| Msa0878990 | AT2G36870.1 | 43.548 | 186 | 94 | 4 | 58 | 235 | 67 | 249 | 7.45e-47 | 159 |
| Msa0878990 | AT2G01850.1 | 37.449 | 243 | 141 | 7 | 3 | 238 | 5 | 243 | 2.58e-46 | 158 |
| Msa0878990 | AT4G18990.1 | 43.169 | 183 | 98 | 3 | 54 | 231 | 62 | 243 | 3.95e-46 | 159 |
| Msa0878990 | AT3G48580.1 | 39.640 | 222 | 119 | 5 | 30 | 250 | 32 | 239 | 2.53e-45 | 154 |
| Msa0878990 | AT1G10550.1 | 42.632 | 190 | 97 | 5 | 51 | 233 | 60 | 244 | 5.93e-45 | 154 |
| Msa0878990 | AT3G48580.3 | 40.000 | 190 | 100 | 4 | 62 | 250 | 4 | 180 | 1.55e-38 | 135 |
| Msa0878990 | AT4G18990.2 | 41.447 | 152 | 76 | 3 | 92 | 231 | 19 | 169 | 2.97e-36 | 130 |
| Msa0878990 | AT3G48580.2 | 33.333 | 222 | 113 | 6 | 30 | 250 | 32 | 219 | 4.47e-30 | 114 |
| Msa0878990 | AT2G36870.2 | 45.536 | 112 | 53 | 2 | 58 | 161 | 67 | 178 | 1.79e-27 | 105 |
Find 59 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATATACAATAGTTTA+TGG | 0.145009 | 6_1:+20493797 | Msa0878990:CDS |
| TCCAAAGGGTCTTATTTATT+TGG | 0.166110 | 6_1:+20492381 | Msa0878990:CDS |
| TAATAAGTACTTACACAATT+TGG | 0.181871 | 6_1:-20492942 | None:intergenic |
| ATGTTCTTGAACACCCTTAT+TGG | 0.186258 | 6_1:-20493736 | None:intergenic |
| GATCATATCAAATACTTAAA+TGG | 0.261028 | 6_1:+20491175 | Msa0878990:CDS |
| TACAAAGGGTTTCATATTGA+TGG | 0.286250 | 6_1:+20493892 | Msa0878990:CDS |
| GAGAACAAAGAATCTATCTT+TGG | 0.292863 | 6_1:+20492869 | Msa0878990:CDS |
| TTGTGGATGATATTCCAATA+AGG | 0.311508 | 6_1:+20493722 | Msa0878990:CDS |
| ACATCAAGGTCATGAAATTC+AGG | 0.340788 | 6_1:-20493976 | None:intergenic |
| GTCGTAATTATGTGCCTACT+TGG | 0.343620 | 6_1:+20491146 | Msa0878990:CDS |
| AAATCATGAATTCTTCTTTG+TGG | 0.356564 | 6_1:+20491044 | None:intergenic |
| ACCAAATAAATAAGACCCTT+TGG | 0.370193 | 6_1:-20492382 | None:intergenic |
| CTCAATGGCAAAGGCTAAGA+TGG | 0.402835 | 6_1:+20494001 | Msa0878990:CDS |
| TTCAAGAACATCAATCAGTT+AGG | 0.408800 | 6_1:+20493748 | Msa0878990:CDS |
| TGTGGATGATATTCCAATAA+GGG | 0.413494 | 6_1:+20493723 | Msa0878990:CDS |
| ACTCCTGTTGATGTTCCATT+TGG | 0.413889 | 6_1:+20491124 | Msa0878990:CDS |
| CCCTTTGTAAGAGGCTATGA+AGG | 0.414088 | 6_1:-20493878 | None:intergenic |
| AGAGGCTATGAAGGGTGCTT+TGG | 0.415798 | 6_1:-20493869 | None:intergenic |
| GTTTATGGAATGCTGATGAT+TGG | 0.416209 | 6_1:+20493812 | Msa0878990:CDS |
| CGACCAAATGGAACATCAAC+AGG | 0.417482 | 6_1:-20491127 | None:intergenic |
| ATAAATAAGACCCTTTGGAT+TGG | 0.459969 | 6_1:-20492377 | None:intergenic |
| AATATGAAACCCTTTGTAAG+AGG | 0.460984 | 6_1:-20493887 | None:intergenic |
| ATCATAGATATTCTGTGTTG+TGG | 0.461108 | 6_1:+20492911 | Msa0878990:CDS |
| TTGGGCCACAAGGGGTGGAT+TGG | 0.461492 | 6_1:+20493831 | Msa0878990:CDS |
| ACATTTGTTTGTAAAATGTA+TGG | 0.464247 | 6_1:-20492823 | None:intergenic |
| GGAACATCAACAGGAGTCCT+TGG | 0.467558 | 6_1:-20491118 | None:intergenic |
| GGCACATAATTACGACCAAA+TGG | 0.477157 | 6_1:-20491139 | None:intergenic |
| GAGTTCTTAGGGAACAGAAC+AGG | 0.482915 | 6_1:+20492796 | Msa0878990:CDS |
| ATATTCTTTCTCTCATAGCA+TGG | 0.483732 | 6_1:+20496442 | Msa0878990:CDS |
| TATGGAATGCAGTTTCTTTG+TGG | 0.485427 | 6_1:+20493705 | Msa0878990:intron |
| TCAAGAACATCAATCAGTTA+GGG | 0.487977 | 6_1:+20493749 | Msa0878990:CDS |
| TTACAAACAAATGTGTTCAC+AGG | 0.492984 | 6_1:+20492832 | Msa0878990:CDS |
| CCCTTCATAGCCTCTTACAA+AGG | 0.505336 | 6_1:+20493877 | Msa0878990:CDS |
| CCTTCATAGCCTCTTACAAA+GGG | 0.513581 | 6_1:+20493878 | Msa0878990:CDS |
| ATGGTACCTGGTGATTCAGC+TGG | 0.518135 | 6_1:+20492426 | Msa0878990:CDS |
| TTTATGGAATGCTGATGATT+GGG | 0.520881 | 6_1:+20493813 | Msa0878990:CDS |
| CTTAATCTTGATAAATCCAC+TGG | 0.526040 | 6_1:+20491214 | Msa0878990:CDS |
| ATGACCTTGATGTTGCTCAA+TGG | 0.530219 | 6_1:+20493986 | Msa0878990:CDS |
| TCGTAATTATGTGCCTACTT+GGG | 0.537039 | 6_1:+20491147 | Msa0878990:CDS |
| TTTGCCATTGAGCAACATCA+AGG | 0.537545 | 6_1:-20493990 | None:intergenic |
| GATGATTGGGCCACAAGGGG+TGG | 0.538500 | 6_1:+20493826 | Msa0878990:CDS |
| CTTCAGTATGTACATAAGAA+TGG | 0.540587 | 6_1:+20492407 | Msa0878990:CDS |
| TTTCTCCAATCCACCCCTTG+TGG | 0.544658 | 6_1:-20493836 | None:intergenic |
| ATGCTGATGATTGGGCCACA+AGG | 0.558889 | 6_1:+20493821 | Msa0878990:CDS |
| TGCTGATGATTGGGCCACAA+GGG | 0.560025 | 6_1:+20493822 | Msa0878990:CDS |
| AATGTGTTCACAGGAGGCAA+AGG | 0.571333 | 6_1:+20492841 | Msa0878990:CDS |
| TTGATGTTGCTCAATGGCAA+AGG | 0.585400 | 6_1:+20493992 | Msa0878990:CDS |
| GTGGATTGGAGAAAACAGAT+TGG | 0.591719 | 6_1:+20493845 | Msa0878990:CDS |
| GTACTGGTTTCCAATCCAAA+GGG | 0.594043 | 6_1:+20492367 | Msa0878990:CDS |
| GGTACTGGTTTCCAATCCAA+AGG | 0.596981 | 6_1:+20492366 | Msa0878990:intron |
| CAAACAAATGTGTTCACAGG+AGG | 0.609686 | 6_1:+20492835 | Msa0878990:CDS |
| CATATCAAATACTTAAATGG+TGG | 0.615790 | 6_1:+20491178 | Msa0878990:CDS |
| TCAATGGCAAAGGCTAAGAT+GGG | 0.621555 | 6_1:+20494002 | Msa0878990:CDS |
| GCTGATGATTGGGCCACAAG+GGG | 0.635602 | 6_1:+20493823 | Msa0878990:CDS |
| ATATGATCATAAGCCCAAGT+AGG | 0.638602 | 6_1:-20491160 | None:intergenic |
| CCTTTGTAAGAGGCTATGAA+GGG | 0.655937 | 6_1:-20493877 | None:intergenic |
| ACTGTTCCAGCTGAATCACC+AGG | 0.670532 | 6_1:-20492432 | None:intergenic |
| ATGTACATAAGAATGGTACC+TGG | 0.672045 | 6_1:+20492414 | Msa0878990:CDS |
| CAAGAACATCAATCAGTTAG+GGG | 0.677246 | 6_1:+20493750 | Msa0878990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTTATTTACATTTTTT+TGG | + | chr6_1:20491356-20491375 | Msa0878990:intron | 10.0% |
| !!! | ACTTATTTACATTTTTTTTT+TGG | + | chr6_1:20491534-20491553 | Msa0878990:intron | 10.0% |
| !! | TTTATTTCAAAATAAATTAG+AGG | + | chr6_1:20492086-20492105 | Msa0878990:intron | 10.0% |
| !! | TTATTTCAAAATAAATTAGA+GGG | + | chr6_1:20492087-20492106 | Msa0878990:intron | 10.0% |
| !!! | AGTTTTATTATTATGATTTT+TGG | + | chr6_1:20492124-20492143 | Msa0878990:intron | 10.0% |
| !!! | AACAAAAATGATTTTTTTTT+AGG | - | chr6_1:20492317-20492336 | None:intergenic | 10.0% |
| !!! | GATATAATTATTTTTTACTA+TGG | - | chr6_1:20492520-20492539 | None:intergenic | 10.0% |
| !!! | TAATTTATTTATTTTTTGAG+GGG | - | chr6_1:20493409-20493428 | None:intergenic | 10.0% |
| !! | ATTGTTCTATAAAATAAAAA+AGG | + | chr6_1:20493526-20493545 | Msa0878990:intron | 10.0% |
| !!! | TTACAACAATATTTTTCTAT+AGG | + | chr6_1:20491275-20491294 | Msa0878990:intron | 15.0% |
| !! | AAATTATAGGATCAATATTA+TGG | - | chr6_1:20491700-20491719 | None:intergenic | 15.0% |
| !! | TAAAATTTACATTATCTAAG+TGG | + | chr6_1:20491827-20491846 | Msa0878990:intron | 15.0% |
| !! | AAAATTTACATTATCTAAGT+GGG | + | chr6_1:20491828-20491847 | Msa0878990:intron | 15.0% |
| !! | TTTATCGCAAATATAAAAAT+AGG | + | chr6_1:20491888-20491907 | Msa0878990:intron | 15.0% |
| !!! | TTTGAAATAAAAAAATAGAG+AGG | - | chr6_1:20492077-20492096 | None:intergenic | 15.0% |
| !!! | TAATAAAACTCTCTATTTTT+GGG | - | chr6_1:20492114-20492133 | None:intergenic | 15.0% |
| !!! | ATAATAAAACTCTCTATTTT+TGG | - | chr6_1:20492115-20492134 | None:intergenic | 15.0% |
| !! | ATGTAAAGTCAAAATAAATT+AGG | - | chr6_1:20492724-20492743 | None:intergenic | 15.0% |
| !!! | AATTTATTTTGACTTTACAT+TGG | + | chr6_1:20492724-20492743 | Msa0878990:intron | 15.0% |
| !!! | AATTTATTTATTTTTTGAGG+GGG | - | chr6_1:20493408-20493427 | None:intergenic | 15.0% |
| !!! | ATTTTCTAAATTATCGTTTA+AGG | + | chr6_1:20493500-20493519 | Msa0878990:intron | 15.0% |
| !!! | TTTTCTAAATTATCGTTTAA+GGG | + | chr6_1:20493501-20493520 | Msa0878990:intron | 15.0% |
| !!! | AAACTATTGTATATTTTCAT+TGG | - | chr6_1:20493796-20493815 | None:intergenic | 15.0% |
| !! | TGAAAATATACAATAGTTTA+TGG | + | chr6_1:20493797-20493816 | Msa0878990:CDS | 15.0% |
| !! | ATTTATCCTTAATGTATTTA+GGG | + | chr6_1:20494620-20494639 | Msa0878990:intron | 15.0% |
| !!! | ATTTTCTATTTAATGAGAAA+TGG | - | chr6_1:20495113-20495132 | None:intergenic | 15.0% |
| !! | TTAAGAACATTCTTAAAATA+TGG | + | chr6_1:20495318-20495337 | Msa0878990:intron | 15.0% |
| !! | GATCATATCAAATACTTAAA+TGG | + | chr6_1:20491175-20491194 | Msa0878990:CDS | 20.0% |
| !! | AAAAAAAAATCACATAGTGT+TGG | - | chr6_1:20491513-20491532 | None:intergenic | 20.0% |
| !!! | ATATTTTAATATCCCTACTT+AGG | + | chr6_1:20491578-20491597 | Msa0878990:intron | 20.0% |
| !!! | TCAGACATTTTGAAAATTAT+AGG | - | chr6_1:20491713-20491732 | None:intergenic | 20.0% |
| !!! | TATAAGGAATGTACTTTTAT+AGG | + | chr6_1:20492001-20492020 | Msa0878990:intron | 20.0% |
| !!! | ATAAGGAATGTACTTTTATA+GGG | + | chr6_1:20492002-20492021 | Msa0878990:intron | 20.0% |
| !! | ACATTCATATTCTTAAAACT+GGG | - | chr6_1:20492175-20492194 | None:intergenic | 20.0% |
| !! | TACATTCATATTCTTAAAAC+TGG | - | chr6_1:20492176-20492195 | None:intergenic | 20.0% |
| !!! | GTTTGATTTTTATATACGAT+CGG | - | chr6_1:20492656-20492675 | None:intergenic | 20.0% |
| !! | ACATTTGTTTGTAAAATGTA+TGG | - | chr6_1:20492826-20492845 | None:intergenic | 20.0% |
| !! | TAATAAGTACTTACACAATT+TGG | - | chr6_1:20492945-20492964 | None:intergenic | 20.0% |
| !!! | TAAAGTTTGAGGTAAAAATA+TGG | - | chr6_1:20493031-20493050 | None:intergenic | 20.0% |
| !!! | AAACTTTAGAGTTCAATTTT+GGG | + | chr6_1:20493043-20493062 | Msa0878990:intron | 20.0% |
| !! | AAAAACCTTATTATCTTTCT+TGG | - | chr6_1:20493139-20493158 | None:intergenic | 20.0% |
| !! | ATTTGGATTTAAAAAAACGT+AGG | - | chr6_1:20493347-20493366 | None:intergenic | 20.0% |
| !! | ACAACAAAAATCATGTTAAA+AGG | - | chr6_1:20493630-20493649 | None:intergenic | 20.0% |
| !! | CTCTTATAAAAACTCAAATA+TGG | + | chr6_1:20493687-20493706 | Msa0878990:intron | 20.0% |
| !!! | TATTGTATATTTTCATTGGT+TGG | - | chr6_1:20493792-20493811 | None:intergenic | 20.0% |
| !!! | TTGTTTTAAAATAACACGTA+AGG | + | chr6_1:20494297-20494316 | Msa0878990:intron | 20.0% |
| !!! | TGTTTTAAAATAACACGTAA+GGG | + | chr6_1:20494298-20494317 | Msa0878990:intron | 20.0% |
| !! | GATTTATCCTTAATGTATTT+AGG | + | chr6_1:20494619-20494638 | Msa0878990:intron | 20.0% |
| !!! | TAATACCATATTAATTTGAG+TGG | - | chr6_1:20494976-20494995 | None:intergenic | 20.0% |
| !! | GTATTATTACCATTCTATTA+TGG | + | chr6_1:20494990-20495009 | Msa0878990:intron | 20.0% |
| !! | ATATATAAACACTTACTAGT+TGG | + | chr6_1:20495902-20495921 | Msa0878990:intron | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | + | chr6_1:20495903-20495922 | Msa0878990:intron | 20.0% |
| !! | TTAATTCTAGTGAAGAAAAT+TGG | - | chr6_1:20495997-20496016 | None:intergenic | 20.0% |
| !! | TTGTATATTAGCAAATCTTA+TGG | - | chr6_1:20496073-20496092 | None:intergenic | 20.0% |
| !!! | TAAGATTTGCTAATATACAA+AGG | + | chr6_1:20496073-20496092 | Msa0878990:intron | 20.0% |
| ! | CATATCAAATACTTAAATGG+TGG | + | chr6_1:20491178-20491197 | Msa0878990:CDS | 25.0% |
| ! | AAAAAAAGTCACATAGTGTT+CGG | - | chr6_1:20491335-20491354 | None:intergenic | 25.0% |
| ! | GTAAATTTGTAACCTAAGTA+GGG | - | chr6_1:20491593-20491612 | None:intergenic | 25.0% |
| ! | TGTAAATTTGTAACCTAAGT+AGG | - | chr6_1:20491594-20491613 | None:intergenic | 25.0% |
| !!! | TTGATGATGTGATATTGTTT+AGG | + | chr6_1:20491773-20491792 | Msa0878990:intron | 25.0% |
| ! | TTCTTACATCAGCATTTATA+AGG | + | chr6_1:20491985-20492004 | Msa0878990:intron | 25.0% |
| !!! | CTTTTATAGGGTGTTAAATA+TGG | + | chr6_1:20492014-20492033 | Msa0878990:intron | 25.0% |
| ! | CATTCATATTCTTAAAACTG+GGG | - | chr6_1:20492174-20492193 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAAGAGTAGTCTA+CGG | - | chr6_1:20492203-20492222 | None:intergenic | 25.0% |
| ! | ACTAATAGACAATTAGGAAA+AGG | - | chr6_1:20492290-20492309 | None:intergenic | 25.0% |
| ! | GGTATAACTAATAGACAATT+AGG | - | chr6_1:20492296-20492315 | None:intergenic | 25.0% |
| !! | ATGCAATTTTTGTACATAAC+AGG | + | chr6_1:20492345-20492364 | Msa0878990:intron | 25.0% |
| !!! | AGATAGATTTTGAGTTCTTA+GGG | + | chr6_1:20492785-20492804 | Msa0878990:CDS | 25.0% |
| !! | TATCTATGATAAGCTTTTGT+AGG | - | chr6_1:20492901-20492920 | None:intergenic | 25.0% |
| !!! | AAATTGAACTCTAAAGTTTG+AGG | - | chr6_1:20493042-20493061 | None:intergenic | 25.0% |
| !!! | CAAACTTTAGAGTTCAATTT+TGG | + | chr6_1:20493042-20493061 | Msa0878990:intron | 25.0% |
| ! | TTATGATCATTAGAGTCAAA+TGG | - | chr6_1:20493094-20493113 | None:intergenic | 25.0% |
| ! | AACTACCAAGAAAGATAATA+AGG | + | chr6_1:20493131-20493150 | Msa0878990:intron | 25.0% |
| !!! | TTTTCATTGGTTGGTTAAAT+GGG | - | chr6_1:20493783-20493802 | None:intergenic | 25.0% |
| !!! | ATTTTCATTGGTTGGTTAAA+TGG | - | chr6_1:20493784-20493803 | None:intergenic | 25.0% |
| ! | CAACAAGAATTACCATAAAA+TGG | - | chr6_1:20494277-20494296 | None:intergenic | 25.0% |
| ! | TACAAAATAGCAACAAAGAA+TGG | - | chr6_1:20494361-20494380 | None:intergenic | 25.0% |
| !!! | TGTTGCTATTTTGTAACAAA+TGG | + | chr6_1:20494366-20494385 | Msa0878990:intron | 25.0% |
| !! | TGTAACAATCAAAACTTGTT+TGG | + | chr6_1:20494475-20494494 | Msa0878990:intron | 25.0% |
| !!! | CGTCTTAAAATTGTTGTTTT+TGG | + | chr6_1:20494693-20494712 | Msa0878990:intron | 25.0% |
| ! | GATTTCCAAACTGTTAAATT+TGG | + | chr6_1:20494715-20494734 | Msa0878990:intron | 25.0% |
| ! | GAAATCCAAATTTAACAGTT+TGG | - | chr6_1:20494723-20494742 | None:intergenic | 25.0% |
| ! | TGAAACCACTCAAATTAATA+TGG | + | chr6_1:20494968-20494987 | Msa0878990:intron | 25.0% |
| ! | TTCTATTTAATGAGAAATGG+TGG | - | chr6_1:20495110-20495129 | None:intergenic | 25.0% |
| ! | GGACATTAGTATTATGAAAA+GGG | + | chr6_1:20495179-20495198 | Msa0878990:intron | 25.0% |
| ! | TTCGATAATATATGTCCATT+CGG | - | chr6_1:20495232-20495251 | None:intergenic | 25.0% |
| ! | AATGGACATATATTATCGAA+GGG | + | chr6_1:20495232-20495251 | Msa0878990:intron | 25.0% |
| !! | AAAGAATTTCATTGAGTTGT+CGG | - | chr6_1:20495475-20495494 | None:intergenic | 25.0% |
| !! | CAACTCAATGAAATTCTTTT+CGG | + | chr6_1:20495476-20495495 | Msa0878990:intron | 25.0% |
| ! | TTACAAACTCTCCTTATATA+AGG | - | chr6_1:20495529-20495548 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGGATATATC+CGG | + | chr6_1:20495605-20495624 | Msa0878990:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | + | chr6_1:20495904-20495923 | Msa0878990:intron | 25.0% |
| !! | TTTAGAATACACCTATGAAA+AGG | - | chr6_1:20496202-20496221 | None:intergenic | 25.0% |
| CTTAATCTTGATAAATCCAC+TGG | + | chr6_1:20491214-20491233 | Msa0878990:CDS | 30.0% | |
| AAATGATAATAGCATACCAG+TGG | - | chr6_1:20491233-20491252 | None:intergenic | 30.0% | |
| TTCTATAGGTTTCTATGTTG+AGG | + | chr6_1:20491289-20491308 | Msa0878990:intron | 30.0% | |
| !! | AAGTAGAAGCATTAAGATGT+TGG | - | chr6_1:20491400-20491419 | None:intergenic | 30.0% |
| ACATCTTAATGCTTCTACTT+AGG | + | chr6_1:20491400-20491419 | Msa0878990:intron | 30.0% | |
| CAAATTTACATTGCCAAACT+CGG | + | chr6_1:20491604-20491623 | Msa0878990:intron | 30.0% | |
| TGTAAATAATAAGCCGAGTT+TGG | - | chr6_1:20491620-20491639 | None:intergenic | 30.0% | |
| ! | TTTTTGTACATAACAGGTAC+TGG | + | chr6_1:20492351-20492370 | Msa0878990:intron | 30.0% |
| ATAAATAAGACCCTTTGGAT+TGG | - | chr6_1:20492380-20492399 | None:intergenic | 30.0% | |
| !! | TCCAAAGGGTCTTATTTATT+TGG | + | chr6_1:20492381-20492400 | Msa0878990:CDS | 30.0% |
| ACCAAATAAATAAGACCCTT+TGG | - | chr6_1:20492385-20492404 | None:intergenic | 30.0% | |
| CTTCAGTATGTACATAAGAA+TGG | + | chr6_1:20492407-20492426 | Msa0878990:CDS | 30.0% | |
| !! | ATTTTGAGAAGATAACTGCA+TGG | - | chr6_1:20492752-20492771 | None:intergenic | 30.0% |
| !!! | GAGATAGATTTTGAGTTCTT+AGG | + | chr6_1:20492784-20492803 | Msa0878990:CDS | 30.0% |
| TTACAAACAAATGTGTTCAC+AGG | + | chr6_1:20492832-20492851 | Msa0878990:CDS | 30.0% | |
| GAGAACAAAGAATCTATCTT+TGG | + | chr6_1:20492869-20492888 | Msa0878990:CDS | 30.0% | |
| ATCATAGATATTCTGTGTTG+TGG | + | chr6_1:20492911-20492930 | Msa0878990:CDS | 30.0% | |
| ATATGGATGATGAATTGTGT+GGG | - | chr6_1:20493014-20493033 | None:intergenic | 30.0% | |
| AATATGGATGATGAATTGTG+TGG | - | chr6_1:20493015-20493034 | None:intergenic | 30.0% | |
| TTGTGGATGATATTCCAATA+AGG | + | chr6_1:20493722-20493741 | Msa0878990:CDS | 30.0% | |
| TGTGGATGATATTCCAATAA+GGG | + | chr6_1:20493723-20493742 | Msa0878990:CDS | 30.0% | |
| TTCAAGAACATCAATCAGTT+AGG | + | chr6_1:20493748-20493767 | Msa0878990:CDS | 30.0% | |
| TCAAGAACATCAATCAGTTA+GGG | + | chr6_1:20493749-20493768 | Msa0878990:CDS | 30.0% | |
| TTTATGGAATGCTGATGATT+GGG | + | chr6_1:20493813-20493832 | Msa0878990:CDS | 30.0% | |
| AATATGAAACCCTTTGTAAG+AGG | - | chr6_1:20493890-20493909 | None:intergenic | 30.0% | |
| TACAAAGGGTTTCATATTGA+TGG | + | chr6_1:20493892-20493911 | Msa0878990:CDS | 30.0% | |
| CAAAACATGAGAAAAACGTT+TGG | - | chr6_1:20494457-20494476 | None:intergenic | 30.0% | |
| AGTTGTCCCTAAATACATTA+AGG | - | chr6_1:20494629-20494648 | None:intergenic | 30.0% | |
| ACTGAAGAAGTTACTTATTG+AGG | - | chr6_1:20494655-20494674 | None:intergenic | 30.0% | |
| GTGGTTTCAATATTAAAGAG+TGG | - | chr6_1:20494957-20494976 | None:intergenic | 30.0% | |
| AGAAGTTAAAGTTAGAATGG+TGG | - | chr6_1:20495043-20495062 | None:intergenic | 30.0% | |
| TGGAGAAGTTAAAGTTAGAA+TGG | - | chr6_1:20495046-20495065 | None:intergenic | 30.0% | |
| ACTTCTCCAAAACATCAATA+TGG | + | chr6_1:20495057-20495076 | Msa0878990:intron | 30.0% | |
| AAGATCATTCTTAATTCCGA+CGG | + | chr6_1:20495157-20495176 | Msa0878990:intron | 30.0% | |
| GGGACATTAGTATTATGAAA+AGG | + | chr6_1:20495178-20495197 | Msa0878990:intron | 30.0% | |
| ATAGTACTCTATATTCCGAA+TGG | + | chr6_1:20495214-20495233 | Msa0878990:intron | 30.0% | |
| GAATGGACATATATTATCGA+AGG | + | chr6_1:20495231-20495250 | Msa0878990:intron | 30.0% | |
| !! | AGAAACTTGTTAACACAAGT+CGG | + | chr6_1:20495425-20495444 | Msa0878990:intron | 30.0% |
| ! | AAGAATTTCATTGAGTTGTC+GGG | - | chr6_1:20495474-20495493 | None:intergenic | 30.0% |
| TAACAAAAAACGAGTGACTT+GGG | + | chr6_1:20495546-20495565 | Msa0878990:intron | 30.0% | |
| !!! | AACGCGTTTTGTTTCTTAAT+TGG | + | chr6_1:20495595-20495614 | Msa0878990:intron | 30.0% |
| !!! | AAACCATTTTGAAGTCAAGT+GGG | - | chr6_1:20496038-20496057 | None:intergenic | 30.0% |
| TCTATACTCTATGTTGAGTA+GGG | - | chr6_1:20496366-20496385 | None:intergenic | 30.0% | |
| ATCTATACTCTATGTTGAGT+AGG | - | chr6_1:20496367-20496386 | None:intergenic | 30.0% | |
| ATATTCTTTCTCTCATAGCA+TGG | + | chr6_1:20496442-20496461 | Msa0878990:CDS | 30.0% | |
| TCGTAATTATGTGCCTACTT+GGG | + | chr6_1:20491147-20491166 | Msa0878990:CDS | 35.0% | |
| ATATGATCATAAGCCCAAGT+AGG | - | chr6_1:20491163-20491182 | None:intergenic | 35.0% | |
| AAAATGTCTGATGACCTATG+TGG | + | chr6_1:20491722-20491741 | Msa0878990:intron | 35.0% | |
| AAGCTTATCACTTACCACAT+AGG | - | chr6_1:20491739-20491758 | None:intergenic | 35.0% | |
| TGGTAAGTGATAAGCTTATG+TGG | + | chr6_1:20491742-20491761 | Msa0878990:intron | 35.0% | |
| ATGTACATAAGAATGGTACC+TGG | + | chr6_1:20492414-20492433 | Msa0878990:CDS | 35.0% | |
| TCATTAGAGTCAAATGGAGA+AGG | - | chr6_1:20493088-20493107 | None:intergenic | 35.0% | |
| !! | AAAAACGTAGGCTTTTGAGA+GGG | - | chr6_1:20493335-20493354 | None:intergenic | 35.0% |
| ! | AAAAAACGTAGGCTTTTGAG+AGG | - | chr6_1:20493336-20493355 | None:intergenic | 35.0% |
| AGAGTTAACGCATCAACATT+TGG | - | chr6_1:20493364-20493383 | None:intergenic | 35.0% | |
| TATGGAATGCAGTTTCTTTG+TGG | + | chr6_1:20493705-20493724 | Msa0878990:intron | 35.0% | |
| ATGTTCTTGAACACCCTTAT+TGG | - | chr6_1:20493739-20493758 | None:intergenic | 35.0% | |
| CAAGAACATCAATCAGTTAG+GGG | + | chr6_1:20493750-20493769 | Msa0878990:CDS | 35.0% | |
| GTTTATGGAATGCTGATGAT+TGG | + | chr6_1:20493812-20493831 | Msa0878990:CDS | 35.0% | |
| ! | GCAAAATTTTGTGACACACA+AGG | + | chr6_1:20493934-20493953 | Msa0878990:CDS | 35.0% |
| ACATCAAGGTCATGAAATTC+AGG | - | chr6_1:20493979-20493998 | None:intergenic | 35.0% | |
| TGTGTATCATGCATTCTTGT+GGG | - | chr6_1:20494150-20494169 | None:intergenic | 35.0% | |
| TTGTGTATCATGCATTCTTG+TGG | - | chr6_1:20494151-20494170 | None:intergenic | 35.0% | |
| ATTACCATAAAATGGCATGC+TGG | - | chr6_1:20494269-20494288 | None:intergenic | 35.0% | |
| CTTCGGTAGATAACAGAATT+TGG | - | chr6_1:20494745-20494764 | None:intergenic | 35.0% | |
| TATCTACCGAAGTTGTTACT+AGG | + | chr6_1:20494753-20494772 | Msa0878990:intron | 35.0% | |
| ACTCTACCTAGTAACAACTT+CGG | - | chr6_1:20494762-20494781 | None:intergenic | 35.0% | |
| TTAATCGAACAGTTGTAGCT+GGG | - | chr6_1:20494879-20494898 | None:intergenic | 35.0% | |
| GAGAATTACACCCTCAAATA+TGG | + | chr6_1:20494923-20494942 | Msa0878990:intron | 35.0% | |
| GGTCTTAGAACCATATTTGA+GGG | - | chr6_1:20494936-20494955 | None:intergenic | 35.0% | |
| ! | TGGTCTTAGAACCATATTTG+AGG | - | chr6_1:20494937-20494956 | None:intergenic | 35.0% |
| GTTTCAGCACCATAATAGAA+TGG | - | chr6_1:20495002-20495021 | None:intergenic | 35.0% | |
| ! | GTAGTGCCATATTGATGTTT+TGG | - | chr6_1:20495066-20495085 | None:intergenic | 35.0% |
| AGATCATTCTTAATTCCGAC+GGG | + | chr6_1:20495158-20495177 | Msa0878990:intron | 35.0% | |
| TCATAATACTAATGTCCCGT+CGG | - | chr6_1:20495176-20495195 | None:intergenic | 35.0% | |
| ! | TTTTCGGTTTAATGTCCCTT+CGG | - | chr6_1:20495285-20495304 | None:intergenic | 35.0% |
| AAGGGACATTAAACCGAAAA+AGG | + | chr6_1:20495285-20495304 | Msa0878990:intron | 35.0% | |
| AGGGACATTAAACCGAAAAA+GGG | + | chr6_1:20495286-20495305 | Msa0878990:intron | 35.0% | |
| TTAAACCGAAAAAGGGACTA+TGG | + | chr6_1:20495293-20495312 | Msa0878990:intron | 35.0% | |
| ! | TAAGACCATAGTCCCTTTTT+CGG | - | chr6_1:20495301-20495320 | None:intergenic | 35.0% |
| GTAACAAAAAACGAGTGACT+TGG | + | chr6_1:20495545-20495564 | Msa0878990:intron | 35.0% | |
| AACAAAAAACGAGTGACTTG+GGG | + | chr6_1:20495547-20495566 | Msa0878990:intron | 35.0% | |
| AAACAAAACGCGTTTGCTTA+AGG | - | chr6_1:20495589-20495608 | None:intergenic | 35.0% | |
| TAAAAATGTCCCACATTGGA+GGG | - | chr6_1:20495933-20495952 | None:intergenic | 35.0% | |
| TTAAAAATGTCCCACATTGG+AGG | - | chr6_1:20495934-20495953 | None:intergenic | 35.0% | |
| GACTTAAAAATGTCCCACAT+TGG | - | chr6_1:20495937-20495956 | None:intergenic | 35.0% | |
| CTATGAAAGAACTAGTGTGT+GGG | - | chr6_1:20495963-20495982 | None:intergenic | 35.0% | |
| ACTATGAAAGAACTAGTGTG+TGG | - | chr6_1:20495964-20495983 | None:intergenic | 35.0% | |
| !!! | AACCATTTTGAAGTCAAGTG+GGG | - | chr6_1:20496037-20496056 | None:intergenic | 35.0% |
| !!! | GAAACCATTTTGAAGTCAAG+TGG | - | chr6_1:20496039-20496058 | None:intergenic | 35.0% |
| !! | TTTGCAAAGGTTCAAGTTGT+TGG | - | chr6_1:20496104-20496123 | None:intergenic | 35.0% |
| ATTCTGCCTCAAAATTCCAT+AGG | + | chr6_1:20496279-20496298 | Msa0878990:intron | 35.0% | |
| ! | CTTCTTTTGCTGCAAATCCA+AGG | + | chr6_1:20491101-20491120 | Msa0878990:CDS | 40.0% |
| ACTCCTGTTGATGTTCCATT+TGG | + | chr6_1:20491124-20491143 | Msa0878990:CDS | 40.0% | |
| GGCACATAATTACGACCAAA+TGG | - | chr6_1:20491142-20491161 | None:intergenic | 40.0% | |
| GTCGTAATTATGTGCCTACT+TGG | + | chr6_1:20491146-20491165 | Msa0878990:CDS | 40.0% | |
| !! | GTACTGGTTTCCAATCCAAA+GGG | + | chr6_1:20492367-20492386 | Msa0878990:CDS | 40.0% |
| CAAACAAATGTGTTCACAGG+AGG | + | chr6_1:20492835-20492854 | Msa0878990:CDS | 40.0% | |
| !! | GTGGATTGGAGAAAACAGAT+TGG | + | chr6_1:20493845-20493864 | Msa0878990:CDS | 40.0% |
| CCTTTGTAAGAGGCTATGAA+GGG | - | chr6_1:20493880-20493899 | None:intergenic | 40.0% | |
| CCTTCATAGCCTCTTACAAA+GGG | + | chr6_1:20493878-20493897 | Msa0878990:CDS | 40.0% | |
| GTGACACACAAGGAAAAAGA+TGG | + | chr6_1:20493944-20493963 | Msa0878990:CDS | 40.0% | |
| ACACACAAGGAAAAAGATGG+TGG | + | chr6_1:20493947-20493966 | Msa0878990:CDS | 40.0% | |
| CACACAAGGAAAAAGATGGT+GGG | + | chr6_1:20493948-20493967 | Msa0878990:CDS | 40.0% | |
| ATGACCTTGATGTTGCTCAA+TGG | + | chr6_1:20493986-20494005 | Msa0878990:CDS | 40.0% | |
| TTTGCCATTGAGCAACATCA+AGG | - | chr6_1:20493993-20494012 | None:intergenic | 40.0% | |
| TTGATGTTGCTCAATGGCAA+AGG | + | chr6_1:20493992-20494011 | Msa0878990:CDS | 40.0% | |
| TCAATGGCAAAGGCTAAGAT+GGG | + | chr6_1:20494002-20494021 | Msa0878990:CDS | 40.0% | |
| TCATGCATTCTTGTGGGAAA+AGG | - | chr6_1:20494144-20494163 | None:intergenic | 40.0% | |
| TGCTGGATGTATAGACATGT+TGG | - | chr6_1:20494252-20494271 | None:intergenic | 40.0% | |
| !!! | ACATCCAGCATGCCATTTTA+TGG | + | chr6_1:20494262-20494281 | Msa0878990:intron | 40.0% |
| AGTCTACCTTGCACAACTTT+GGG | - | chr6_1:20494825-20494844 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAACTT+TGG | - | chr6_1:20494826-20494845 | None:intergenic | 40.0% | |
| GTTAATCGAACAGTTGTAGC+TGG | - | chr6_1:20494880-20494899 | None:intergenic | 40.0% | |
| GTGCTGAAACCACTCAAATA+TGG | + | chr6_1:20495012-20495031 | Msa0878990:intron | 40.0% | |
| GTGGTAACACCATATTTGAG+TGG | - | chr6_1:20495024-20495043 | None:intergenic | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr6_1:20495091-20495110 | None:intergenic | 40.0% | |
| AAGACCACTCTTAATTCCGA+AGG | + | chr6_1:20495266-20495285 | Msa0878990:intron | 40.0% | |
| AGACCACTCTTAATTCCGAA+GGG | + | chr6_1:20495267-20495286 | Msa0878990:intron | 40.0% | |
| CCTTTCGGTTTCAAATAGAG+CGG | - | chr6_1:20495383-20495402 | None:intergenic | 40.0% | |
| ! | CGCTCTATTTGAAACCGAAA+GGG | + | chr6_1:20495381-20495400 | Msa0878990:intron | 40.0% |
| !! | AACTTGTTAACACAAGTCGG+AGG | + | chr6_1:20495428-20495447 | Msa0878990:intron | 40.0% |
| ! | ACTTGTTAACACAAGTCGGA+GGG | + | chr6_1:20495429-20495448 | Msa0878990:intron | 40.0% |
| !! | TTTTCGGTGTGTAGAATGAG+TGG | + | chr6_1:20495492-20495511 | Msa0878990:intron | 40.0% |
| ! | TTTCGGTGTGTAGAATGAGT+GGG | + | chr6_1:20495493-20495512 | Msa0878990:intron | 40.0% |
| GGCGAACTTCTCCTTATATA+AGG | + | chr6_1:20495515-20495534 | Msa0878990:intron | 40.0% | |
| TGGATATATCCGGAAGTTTC+TGG | + | chr6_1:20495615-20495634 | Msa0878990:intron | 40.0% | |
| ! | AAGTTTCTGGATACGCGATT+TGG | + | chr6_1:20495628-20495647 | Msa0878990:intron | 40.0% |
| GTTCACCCGTTCACAAAATT+GGG | + | chr6_1:20495843-20495862 | Msa0878990:intron | 40.0% | |
| ATGAGCAAAGTGATCTCCAT+GGG | - | chr6_1:20495884-20495903 | None:intergenic | 40.0% | |
| TATGAGCAAAGTGATCTCCA+TGG | - | chr6_1:20495885-20495904 | None:intergenic | 40.0% | |
| !!! | ACCATTTTGAAGTCAAGTGG+GGG | - | chr6_1:20496036-20496055 | None:intergenic | 40.0% |
| CAACTTGAACCTTTGCAAAG+TGG | + | chr6_1:20496105-20496124 | Msa0878990:intron | 40.0% | |
| TTGAACCTTTGCAAAGTGGA+AGG | + | chr6_1:20496109-20496128 | Msa0878990:intron | 40.0% | |
| GAATACCTTCCACTTTGCAA+AGG | - | chr6_1:20496117-20496136 | None:intergenic | 40.0% | |
| CCTATGAAAAGGTTTGTGTG+TGG | - | chr6_1:20496191-20496210 | None:intergenic | 40.0% | |
| ! | CCACACACAAACCTTTTCAT+AGG | + | chr6_1:20496188-20496207 | Msa0878990:intron | 40.0% |
| ! | CTAAAAGCCCGTGTGTTTTA+AGG | + | chr6_1:20496217-20496236 | Msa0878990:intron | 40.0% |
| ATTCGTTAAAACCGGGATAC+AGG | - | chr6_1:20496250-20496269 | None:intergenic | 40.0% | |
| ! | CTAGAGCATTCGTTAAAACC+GGG | - | chr6_1:20496257-20496276 | None:intergenic | 40.0% |
| ! | CCTAGAGCATTCGTTAAAAC+CGG | - | chr6_1:20496258-20496277 | None:intergenic | 40.0% |
| CCTATACGAATGTGGAACTT+AGG | - | chr6_1:20496310-20496329 | None:intergenic | 40.0% | |
| CCTAAGTTCCACATTCGTAT+AGG | + | chr6_1:20496307-20496326 | Msa0878990:intron | 40.0% | |
| TAGACTCACCTATACGAATG+TGG | - | chr6_1:20496318-20496337 | None:intergenic | 40.0% | |
| TCGTATAGGTGAGTCTATCA+AGG | + | chr6_1:20496321-20496340 | Msa0878990:intron | 40.0% | |
| CGTATAGGTGAGTCTATCAA+GGG | + | chr6_1:20496322-20496341 | Msa0878990:intron | 40.0% | |
| CGACCAAATGGAACATCAAC+AGG | - | chr6_1:20491130-20491149 | None:intergenic | 45.0% | |
| ! | TGTTGAGGTGCCCTTATTTG+AGG | + | chr6_1:20491304-20491323 | Msa0878990:intron | 45.0% |
| TTCGGTAGCGCCTCAAATAA+GGG | - | chr6_1:20491317-20491336 | None:intergenic | 45.0% | |
| !! | GGTACTGGTTTCCAATCCAA+AGG | + | chr6_1:20492366-20492385 | Msa0878990:intron | 45.0% |
| GAGTTCTTAGGGAACAGAAC+AGG | + | chr6_1:20492796-20492815 | Msa0878990:CDS | 45.0% | |
| AATGTGTTCACAGGAGGCAA+AGG | + | chr6_1:20492841-20492860 | Msa0878990:CDS | 45.0% | |
| CCCTTCATAGCCTCTTACAA+AGG | + | chr6_1:20493877-20493896 | Msa0878990:CDS | 45.0% | |
| CCCTTTGTAAGAGGCTATGA+AGG | - | chr6_1:20493881-20493900 | None:intergenic | 45.0% | |
| CTCAATGGCAAAGGCTAAGA+TGG | + | chr6_1:20494001-20494020 | Msa0878990:CDS | 45.0% | |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr6_1:20494794-20494813 | Msa0878990:intron | 45.0% |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | - | chr6_1:20494864-20494883 | None:intergenic | 45.0% |
| GCACTACGACCACTCAAATA+TGG | + | chr6_1:20495079-20495098 | Msa0878990:intron | 45.0% | |
| TGTCCCTTCGGAATTAAGAG+TGG | - | chr6_1:20495273-20495292 | None:intergenic | 45.0% | |
| TTGATCGAAGCCACTCGATA+CGG | + | chr6_1:20495350-20495369 | Msa0878990:intron | 45.0% | |
| ! | CCGCTCTATTTGAAACCGAA+AGG | + | chr6_1:20495380-20495399 | Msa0878990:intron | 45.0% |
| TGAAACCGAAAGGGACAGAA+AGG | + | chr6_1:20495390-20495409 | Msa0878990:intron | 45.0% | |
| CTACTCCTTTCTGTCCCTTT+CGG | - | chr6_1:20495398-20495417 | None:intergenic | 45.0% | |
| ! | TTCGGTGTGTAGAATGAGTG+GGG | + | chr6_1:20495494-20495513 | Msa0878990:intron | 45.0% |
| ATCGCGTATCCAGAAACTTC+CGG | - | chr6_1:20495627-20495646 | None:intergenic | 45.0% | |
| ! | TCTGGATACGCGATTTGGAT+CGG | + | chr6_1:20495633-20495652 | Msa0878990:intron | 45.0% |
| CGTTCACCCGTTCACAAAAT+TGG | + | chr6_1:20495842-20495861 | Msa0878990:intron | 45.0% | |
| ! | GGGTACCCAATTTTGTGAAC+GGG | - | chr6_1:20495851-20495870 | None:intergenic | 45.0% |
| !! | GGGGTACCCAATTTTGTGAA+CGG | - | chr6_1:20495852-20495871 | None:intergenic | 45.0% |
| TCACAAAATTGGGTACCCCA+AGG | + | chr6_1:20495853-20495872 | Msa0878990:intron | 45.0% | |
| CACAAAATTGGGTACCCCAA+GGG | + | chr6_1:20495854-20495873 | Msa0878990:intron | 45.0% | |
| TCCCCCACTTGACTTCAAAA+TGG | + | chr6_1:20496032-20496051 | Msa0878990:intron | 45.0% | |
| !! | CCGGTTTTAACGAATGCTCT+AGG | + | chr6_1:20496255-20496274 | Msa0878990:intron | 45.0% |
| GCCTCAAAATTCCATAGGAC+CGG | + | chr6_1:20496284-20496303 | Msa0878990:intron | 45.0% | |
| TACGAATGTGGAACTTAGGC+CGG | - | chr6_1:20496306-20496325 | None:intergenic | 45.0% | |
| !!! | TTAATTTATTTATTTTTTGA+GGG | - | chr6_1:20493410-20493429 | None:intergenic | 5.0% |
| !!! | ATTAATTTATTTATTTTTTG+AGG | - | chr6_1:20493411-20493430 | None:intergenic | 5.0% |
| GGAACATCAACAGGAGTCCT+TGG | - | chr6_1:20491121-20491140 | None:intergenic | 50.0% | |
| GTTCGGTAGCGCCTCAAATA+AGG | - | chr6_1:20491318-20491337 | None:intergenic | 50.0% | |
| ATGGTACCTGGTGATTCAGC+TGG | + | chr6_1:20492426-20492445 | Msa0878990:CDS | 50.0% | |
| ACTGTTCCAGCTGAATCACC+AGG | - | chr6_1:20492435-20492454 | None:intergenic | 50.0% | |
| ATGCTGATGATTGGGCCACA+AGG | + | chr6_1:20493821-20493840 | Msa0878990:CDS | 50.0% | |
| TGCTGATGATTGGGCCACAA+GGG | + | chr6_1:20493822-20493841 | Msa0878990:CDS | 50.0% | |
| TTTCTCCAATCCACCCCTTG+TGG | - | chr6_1:20493839-20493858 | None:intergenic | 50.0% | |
| !! | AGAGGCTATGAAGGGTGCTT+TGG | - | chr6_1:20493872-20493891 | None:intergenic | 50.0% |
| TACTAGGTAGAGTCACGACC+AGG | + | chr6_1:20494769-20494788 | Msa0878990:intron | 50.0% | |
| ACGTCTTAAAGAGAGCGACC+TGG | - | chr6_1:20494790-20494809 | None:intergenic | 50.0% | |
| GCACTACCCAAAGTTGTGCA+AGG | + | chr6_1:20494816-20494835 | Msa0878990:intron | 50.0% | |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | - | chr6_1:20494858-20494877 | None:intergenic | 50.0% |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | - | chr6_1:20494861-20494880 | None:intergenic | 50.0% |
| ! | CTGGATACGCGATTTGGATC+GGG | + | chr6_1:20495634-20495653 | Msa0878990:intron | 50.0% |
| ! | ATACGCGATTTGGATCGGGT+CGG | + | chr6_1:20495638-20495657 | Msa0878990:intron | 50.0% |
| TATAATCCACGACCCAAGCC+CGG | + | chr6_1:20495767-20495786 | Msa0878990:intron | 50.0% | |
| GAAGTCAAGTGGGGGATTGT+TGG | - | chr6_1:20496028-20496047 | None:intergenic | 50.0% | |
| TGCAGGGCCTTAAAACACAC+GGG | - | chr6_1:20496227-20496246 | None:intergenic | 50.0% | |
| GTGCAGGGCCTTAAAACACA+CGG | - | chr6_1:20496228-20496247 | None:intergenic | 50.0% | |
| AAAACCGGGATACAGGTGCA+GGG | - | chr6_1:20496243-20496262 | None:intergenic | 50.0% | |
| TAAAACCGGGATACAGGTGC+AGG | - | chr6_1:20496244-20496263 | None:intergenic | 50.0% | |
| ! | GCCGGTCCTATGGAATTTTG+AGG | - | chr6_1:20496288-20496307 | None:intergenic | 50.0% |
| CATGATCCTGCAGCGAAAGA+AGG | - | chr6_1:20496416-20496435 | None:intergenic | 50.0% | |
| GCTGATGATTGGGCCACAAG+GGG | + | chr6_1:20493823-20493842 | Msa0878990:CDS | 55.0% | |
| CGGTTACGTACCGTATCGAG+TGG | - | chr6_1:20495363-20495382 | None:intergenic | 55.0% | |
| ATCTCCATGGGTGTGCCCTT+GGG | - | chr6_1:20495872-20495891 | None:intergenic | 55.0% | |
| TTGGGGTGACCCTCCAATGT+GGG | + | chr6_1:20495921-20495940 | Msa0878990:intron | 55.0% | |
| TGGAACTTAGGCCGGTCCTA+TGG | - | chr6_1:20496298-20496317 | None:intergenic | 55.0% | |
| CCTGCAGCGAAAGAAGGATG+AGG | - | chr6_1:20496410-20496429 | None:intergenic | 55.0% | |
| CCTCATCCTTCTTTCGCTGC+AGG | + | chr6_1:20496407-20496426 | Msa0878990:intron | 55.0% | |
| GATGATTGGGCCACAAGGGG+TGG | + | chr6_1:20493826-20493845 | Msa0878990:CDS | 60.0% | |
| TTGGGCCACAAGGGGTGGAT+TGG | + | chr6_1:20493831-20493850 | Msa0878990:CDS | 60.0% | |
| CTATCAACTACGCCGCCTCC+AGG | + | chr6_1:20494843-20494862 | Msa0878990:intron | 60.0% | |
| TCTCCATGGGTGTGCCCTTG+GGG | - | chr6_1:20495871-20495890 | None:intergenic | 60.0% | |
| GATCTCCATGGGTGTGCCCT+TGG | - | chr6_1:20495873-20495892 | None:intergenic | 60.0% | |
| GTTGGGGTGACCCTCCAATG+TGG | + | chr6_1:20495920-20495939 | Msa0878990:intron | 60.0% | |
| AAGGCCCTGCACCTGTATCC+CGG | + | chr6_1:20496236-20496255 | Msa0878990:intron | 60.0% | |
| ATCCACGACCCAAGCCCGGT+CGG | + | chr6_1:20495771-20495790 | Msa0878990:intron | 65.0% | |
| ! | GTACCCCAAGGGCACACCCA+TGG | + | chr6_1:20495865-20495884 | Msa0878990:intron | 65.0% |
| ACGACCCAAGCCCGGTCGGA+CGG | + | chr6_1:20495775-20495794 | Msa0878990:intron | 70.0% | |
| GTCCGACCGGGCTTGGGTCG+TGG | - | chr6_1:20495776-20495795 | None:intergenic | 75.0% | |
| ACCCAAGCCCGGTCGGACGG+CGG | + | chr6_1:20495778-20495797 | Msa0878990:intron | 75.0% | |
| ACCGCCGTCCGACCGGGCTT+GGG | - | chr6_1:20495782-20495801 | None:intergenic | 75.0% | |
| GACGACACCGCCGTCCGACC+GGG | - | chr6_1:20495788-20495807 | None:intergenic | 75.0% | |
| CGACGACACCGCCGTCCGAC+CGG | - | chr6_1:20495789-20495808 | None:intergenic | 75.0% | |
| ! | CACCGCCGTCCGACCGGGCT+TGG | - | chr6_1:20495783-20495802 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 20491049 | 20496479 | 20491049 | ID=Msa0878990;Name=Msa0878990 |
| chr6_1 | mRNA | 20491049 | 20496479 | 20491049 | ID=Msa0878990-mRNA-1;Parent=Msa0878990;Name=Msa0878990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.8|1|1|5|0|279 |
| chr6_1 | exon | 20491049 | 20491235 | 20491049 | ID=Msa0878990-mRNA-1:exon:5570;Parent=Msa0878990-mRNA-1 |
| chr6_1 | exon | 20492367 | 20492467 | 20492367 | ID=Msa0878990-mRNA-1:exon:5571;Parent=Msa0878990-mRNA-1 |
| chr6_1 | exon | 20492757 | 20492950 | 20492757 | ID=Msa0878990-mRNA-1:exon:5572;Parent=Msa0878990-mRNA-1 |
| chr6_1 | exon | 20493717 | 20494023 | 20493717 | ID=Msa0878990-mRNA-1:exon:5573;Parent=Msa0878990-mRNA-1 |
| chr6_1 | exon | 20496429 | 20496479 | 20496429 | ID=Msa0878990-mRNA-1:exon:5574;Parent=Msa0878990-mRNA-1 |
| chr6_1 | CDS | 20491049 | 20491235 | 20491049 | ID=Msa0878990-mRNA-1:cds;Parent=Msa0878990-mRNA-1 |
| chr6_1 | CDS | 20492367 | 20492467 | 20492367 | ID=Msa0878990-mRNA-1:cds;Parent=Msa0878990-mRNA-1 |
| chr6_1 | CDS | 20492757 | 20492950 | 20492757 | ID=Msa0878990-mRNA-1:cds;Parent=Msa0878990-mRNA-1 |
| chr6_1 | CDS | 20493717 | 20494023 | 20493717 | ID=Msa0878990-mRNA-1:cds;Parent=Msa0878990-mRNA-1 |
| chr6_1 | CDS | 20496429 | 20496479 | 20496429 | ID=Msa0878990-mRNA-1:cds;Parent=Msa0878990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
