AlfalfaGEDB | Msa0882280

M. sativa cultivar zhongmu-4 / Msa0882280

KEGG: K04422
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF00564.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0882280	XP_013451600.1	93.959	1258	64	3	1	1250	1	1254	0.0	2427

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0882280	sp\|Q9FPR3\|EDR1_ARATH	36.418	335	184	9	898	1229	616	924	2.76e-48	191

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0882280	A0A072U948	93.959	1258	64	3	1	1250	1	1254	0.0	2427

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0438160	Msa0882280	0.998196	1.589884e-258	-8.615850e-47
Msa0882280	Msa0882300	0.993436	1.014129e-199	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0882280	MtrunA17_Chr6g0461841	93.959	1258	64	3	1	1250	1	1254	0.0	2427
Msa0882280	MtrunA17_Chr1g0196631	74.390	328	79	1	914	1236	846	1173	5.66e-169	533
Msa0882280	MtrunA17_Chr1g0196631	44.311	334	170	7	28	349	23	352	3.01e-55	210
Msa0882280	MtrunA17_Chr2g0310761	65.116	387	122	6	855	1237	837	1214	5.58e-156	500
Msa0882280	MtrunA17_Chr2g0310761	50.943	212	82	6	119	322	102	299	3.95e-44	175
Msa0882280	MtrunA17_Chr2g0310781	78.547	289	60	1	942	1230	826	1112	2.03e-155	496
Msa0882280	MtrunA17_Chr2g0310781	41.860	258	113	7	84	341	78	298	1.99e-42	169
Msa0882280	MtrunA17_Chr8g0357611	73.139	309	81	1	922	1230	1331	1637	2.51e-150	494
Msa0882280	MtrunA17_Chr8g0357611	45.872	218	99	6	120	322	95	308	5.65e-41	165
Msa0882280	MtrunA17_Chr2g0305141	71.293	317	88	1	927	1243	1050	1363	9.30e-148	481

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0882280	AT3G24715.1	81.150	313	54	1	929	1236	797	1109	2.18e-177	554
Msa0882280	AT3G24715.1	36.101	554	270	21	35	541	22	538	3.19e-57	217
Msa0882280	AT3G24715.3	81.150	313	54	1	929	1236	797	1109	2.18e-177	554
Msa0882280	AT3G24715.3	36.101	554	270	21	35	541	22	538	3.19e-57	217
Msa0882280	AT3G24715.2	81.150	313	54	1	929	1236	797	1109	2.18e-177	554
Msa0882280	AT3G24715.2	36.101	554	270	21	35	541	22	538	3.19e-57	217
Msa0882280	AT1G04700.1	76.636	321	75	0	916	1236	719	1039	7.09e-172	537
Msa0882280	AT1G04700.1	62.162	148	47	2	191	329	122	269	1.27e-46	183
Msa0882280	AT1G04700.2	76.636	321	75	0	916	1236	719	1039	7.09e-172	537
Msa0882280	AT1G04700.2	62.162	148	47	2	191	329	122	269	1.27e-46	183

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Find 333 sgRNAs with CRISPR-Local

Find 497 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACCTTAAGTGGATC+TGG	0.446803	6_1:-31304323	Msa0882280:CDS
AAAATGCGAGCACATTGGGA+TGG	0.654590	6_1:+31301840	None:intergenic
AAAATTCTTTGAAATCAGAA+AGG	0.534064	6_1:-31304277	Msa0882280:CDS
AAACAAACCATGCTCGTCTC+CGG	0.512830	6_1:+31306110	None:intergenic
AAACAGGAACATTCCGCCTC+TGG	0.434630	6_1:-31303621	Msa0882280:CDS
AAACGTAATACGCTTGTATC+TGG	0.353558	6_1:-31301007	Msa0882280:CDS
AAACTTAGGTGTTATTAGGG+AGG	0.572854	6_1:-31306258	Msa0882280:five_prime_UTR
AAACTTTCGGAGTTTATTGC+TGG	0.358857	6_1:+31303795	None:intergenic
AAAGAAGTCAAGACTAGGGT+TGG	0.524432	6_1:-31300110	Msa0882280:three_prime_UTR
AAAGGAGAAGACGTAACTGT+TGG	0.544335	6_1:+31305100	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATGAAGGTTCAATTATG+GGG	+	chr6_1:31300002-31300021	None:intergenic	30.0%
TACCTAATCTGTTATAAAGG+TGG	+	chr6_1:31300147-31300166	None:intergenic	30.0%
TGTTGTTATAGTAACACTCT+TGG	-	chr6_1:31300526-31300545	Msa0882280:intron	30.0%
ATCTTTATCTCGATGAATCT+CGG	+	chr6_1:31300566-31300585	None:intergenic	30.0%
GATTCATCGAGATAAAGATT+TGG	-	chr6_1:31300567-31300586	Msa0882280:intron	30.0%
GTGTGTTGAATTGAAAACTT+AGG	-	chr6_1:31300684-31300703	Msa0882280:intron	30.0%
AAATTGATAGGTAACAACAC+CGG	-	chr6_1:31300827-31300846	Msa0882280:intron	30.0%
AATAATATCCCTAAACAGGT+TGG	-	chr6_1:31300917-31300936	Msa0882280:intron	30.0%
ATAATATCCCTAAACAGGTT+GGG	-	chr6_1:31300918-31300937	Msa0882280:intron	30.0%
TCTCTTCAACCCTAAAATAT+TGG	+	chr6_1:31301071-31301090	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	31299835	31307143	31299835	ID=Msa0882280;Name=Msa0882280
chr6_1	mRNA	31299835	31307143	31299835	ID=Msa0882280-mRNA-1;Parent=Msa0882280;Name=Msa0882280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=520\|1\|1\|1\|0.87\|0.77\|9\|318\|1250
chr6_1	exon	31299835	31300361	31299835	ID=Msa0882280-mRNA-1:exon:7763;Parent=Msa0882280-mRNA-1
chr6_1	exon	31300755	31300842	31300755	ID=Msa0882280-mRNA-1:exon:7762;Parent=Msa0882280-mRNA-1
chr6_1	exon	31300934	31301056	31300934	ID=Msa0882280-mRNA-1:exon:7761;Parent=Msa0882280-mRNA-1
chr6_1	exon	31301519	31301666	31301519	ID=Msa0882280-mRNA-1:exon:7760;Parent=Msa0882280-mRNA-1
chr6_1	exon	31301743	31301906	31301743	ID=Msa0882280-mRNA-1:exon:7759;Parent=Msa0882280-mRNA-1
chr6_1	exon	31302611	31302763	31302611	ID=Msa0882280-mRNA-1:exon:7758;Parent=Msa0882280-mRNA-1
chr6_1	exon	31303225	31303311	31303225	ID=Msa0882280-mRNA-1:exon:7757;Parent=Msa0882280-mRNA-1
chr6_1	exon	31303392	31306506	31303392	ID=Msa0882280-mRNA-1:exon:7756;Parent=Msa0882280-mRNA-1
chr6_1	exon	31306958	31307143	31306958	ID=Msa0882280-mRNA-1:exon:7755;Parent=Msa0882280-mRNA-1
chr6_1	five_prime_UTR	31306958	31307143	31306958	ID=Msa0882280-mRNA-1:five_prime_utr;Parent=Msa0882280-mRNA-1
chr6_1	five_prime_UTR	31306173	31306506	31306173	ID=Msa0882280-mRNA-1:five_prime_utr;Parent=Msa0882280-mRNA-1
chr6_1	CDS	31303392	31306172	31303392	ID=Msa0882280-mRNA-1:cds;Parent=Msa0882280-mRNA-1
chr6_1	CDS	31303225	31303311	31303225	ID=Msa0882280-mRNA-1:cds;Parent=Msa0882280-mRNA-1
chr6_1	CDS	31302611	31302763	31302611	ID=Msa0882280-mRNA-1:cds;Parent=Msa0882280-mRNA-1
chr6_1	CDS	31301743	31301906	31301743	ID=Msa0882280-mRNA-1:cds;Parent=Msa0882280-mRNA-1
chr6_1	CDS	31301519	31301666	31301519	ID=Msa0882280-mRNA-1:cds;Parent=Msa0882280-mRNA-1
chr6_1	CDS	31300934	31301056	31300934	ID=Msa0882280-mRNA-1:cds;Parent=Msa0882280-mRNA-1
chr6_1	CDS	31300755	31300842	31300755	ID=Msa0882280-mRNA-1:cds;Parent=Msa0882280-mRNA-1
chr6_1	CDS	31300153	31300361	31300153	ID=Msa0882280-mRNA-1:cds;Parent=Msa0882280-mRNA-1
chr6_1	three_prime_UTR	31299835	31300152	31299835	ID=Msa0882280-mRNA-1:three_prime_utr;Parent=Msa0882280-mRNA-1

Gene Sequence

>Msa0882280

ATGGCTTTAAATAAGACAGGAAAATTGATAGGTAACAACACCGGAGACGAGCATGGTTTGTTTCCTCAATACACCCAACCAGAAGTACGCAGTGGTGCTGCAAATGTACATAATAATATCCCTAAACAGGTTGGGGGGAAAATTTCTGCGAATAATGTTCGTGATGGAGTTGGTGGTGGAAGAGTTCTTGATACATCTCGAAATCGTGAGAGTAGGTTTGGGTTAAATAGGGAGAACGGACATGTGAGATACGAAGATCTTACCAATATTTTAGGGTTGAAGAGAATGGACTCTGAGAGTTTTTCTGATATAAGTGACTTTATCCCTAACAAACAGCCAGCAGCACAAGAGATAGAAAACGGCGTTTCTCTGAACATTTTAAGCAAAACTCAAAAGGGAGACGGCGAAAACAGTGGCCTTGGTGCGTTGAGGAAGACCTTTGGTGAAACAATTTGCGACAAAACCGGTACTAGACAAGGTGTATCATCACCCATTTGCAGACATGAAAGATCTCAGTCCAATGGGTTTTCCGGTTCTGGAACTTTAGACGATTCTTTGTCTGGTGGGAAAATGAAGTTTCTTTGCAGCTTCGGCGGAAAAATATTACCAAGGCCAGGTGATGGTAAACTCAGATATGTTGGTGGAGAAACTCACATCATATCTATTCGAAATGATATTTCGTGGCAAGAGCTTATGAACAAGACTTTAGGTATTTGCAGTCAGCCTCACACGATAAAATACCAACTTCCAGGGGAAGATCTCGATGCTCTAATATCGGTTTCCTCCGACGAGGATCTTCAAAATATGATAGAGGAATACCATGGACTTGAAAGTCATGAAGGTTCTCAGAAACTTCGAATATTTTTAGTTCCTTTGGGTGAATCTGAAGAGTCACCGTCAGCCGATGGAAGCACCGTTCTGCAGAATGACCCTGATTATCAATACGTTGTTGCTTTAAACGGCGTATTAGACCATAGTCCTAAGAAAAACATCAGTGGACCGAGTTTGACCAACGAAGCAAATCATTCAGCGAAAACTTTCAATTTCATCCCAACAGTTACGTCTTCTCCTTTGGAGATAAGGGATGGTAATAGTGGTATGAATGCTTTAAATCTTCAAAGTCCGTTGCGAATTTCTCCTACTCCAGTTCAAGTTGCAGGTTCTAGTACAGGTTATATTCAATTGCTCGGTAACAACTCATGCCAGGGAAGTATTGACAGCAATGCGTCATTTGTTACCGCTCAGATATACTCCGGAAACTCAAGCATTAACACTGCTGATTGCAGATACCCTCAACAACCATCTGCTACTTTGGTAAGTGACAGTCATCCTTGTCAACACGGCAATGTTGGTCAACCCAAGAATCTCAATGGACAGTATTTTGACGATTACAGTACTGTATATGCTAGCCAAAGTAATGGTTACGGTGATGAAGCTCTCAGTGGAACTTTGCATAAGGATACAATATTTTACTCTGGAAATTCAATCTCTCAACAGATCGAATCTCATGGGATGCCTCATGCTTTTTCTGATTCGCAGTTGCATGAAAGTGGAGCAAAGTCTGGTTACTGCTCACAAGAAGGAATTACTCCATCTCTCTCCTTGAACCTTGAAAAGTCTCAATTATCTTCGTTGTTAGGTGTCTCGAAAGTGAACCTTACGGAGGGTCAACACGATCCCTTTCTCCATTATCCTCAAATACAAAGTAAGATACCGAATGTGGAGTCGACTGAGATGCACAGATGGCAAGGTCCTGCATCTTCTTCTTCCTACTCAGAATCAGTAAGAACGGATGATCGTATTAATAAGGACAGCATTTTATCTGAAAAAAGCACCTTAAGTGGATCTGGCTTTGTAGAAAGGGATGTGCTGGAAAATTCTTTGAAATCAGAAAGGATGATGATAAATGAAGAAAATAATCCTATTCTTAAGAAGGATAACAAGGTTTATGAGGGAAATCCAACTGTCGATTATATGAGTGAATTGTATCTTTTGGATACATTCCCTACTAATAACGTAAGTGCTAAGATTGGTATGCAAAATAATTGGGAACAACCTTGTGCGGACACGCATCCTTCGTCATCAGGCATGATGGGATTCTCGCTAAATAACCTTATGGATAAGACCCCATCTGATCTTCATAACATCAGCCAAAAGACAAGCGATGGAAGAAACATTGATTTTTCAGCCGGAAACATCGATTTAAATTCTCCAATCCCACAATGTGCAGAAAGCCCGTGTGACAAAAGTTCTGAAAGAGATCACATGTTCAAGTTTTCCTTTGATCCACATTCTCTTAAATCTGCACAAATTCAGCCTTCTCAGAATCAGATCGCTACAGGTTTTCACGATAATCCAGCAATAAACTCCGAAAGTTTGTATCCTGCTGTACTTCATGATGATGTCCGTCCATGTTTGAACTTGCCGGTTGATGGCCTGGATAATTCAAGCAAGAATATATCTTTTGCAAAGGCACCTTCATTTCTCGATGACTTGATTACAAGCCTTGATCAAACGGTTGATCAGTTTAAACAGGAACATTCCGCCTCTGGACTGTCAAAAGTTGAAGGTGTAATTTTAGGACAACCAAAAAATTCAGAAAGGTGTAATGATGCAAATCGAGTGGAGCCGTTTCTTGTAGTAAACGATGTAACCGGTGTTGTTCCTGCACGTCCTAAGTCTTCACCAGTACACACCTCACATGATTTTGATGATGTTGGAAGCGATGTATCTCCATCTCATACAGAAGTAGAGAGCACCATTCCAGAGTCTGATCCTGAGGATTTTAAAGACGACCAAGCCGACGTGAACGACTTCCTTTCTGATGCAATGATAGCAGAAATGGAGGCCAGCATATATGGTTTGCAGATAATTAGGAACGCTGATCTTGAAGAACTTATGGAGTTAGGATCTGGTACCTACGGAACTGTTTATCATGGAAAATGGCGAGGAACCGATGTAGCCATCAAGAGAATTAAAAAGAGCTGCTTTGCTGGAAGATCTTCTGAGCAAGAACGGTTGGCAAGAGATTTCTGGAGAGAGGCACAGATCCTGTCAAATCTTCACCATCCCAATGTGCTCGCATTTTATGGAATCGTACCGGATGGTGCTGGTGGAACCCTAGCAACTGTAACAGAATATATGGTTAACGGCTCCCTTAGGCATGTTCTTGTCAAGAACTACAGATTACTAGATCGTCGTAAAAAGCTTATAATTGCCATGGATGCAGCCTTTGGTATGGAATATTTGCACTCAAAGAATATTGTCCATTTTGATTTAAAGTGTGACAATTTGCTCGTCAATCTAAGGGATCCGCAACGACCCATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGTAATACGCTTGTATCTGGTGGTGTGCGAGGAACCCTTCCATGGATGGCACCTGAGCTGTTGAATGGTAATAGCAGCCGGGTTTCAGAAAAGGTTGATGTTTTCTCATTCGGCATCTCCATGTGGGAGTTATTGACAGGAGAGGAACCTTATGCAGATATGCACTGTGGTGCCATTATTGGGGGCATTGTAAAGAACACACTTCGACCACCGATTCCAGAACGATGTGATCCTGAATGGAGGAAACTTATGGAAGAGTGTTGGTCACGTGAACCCGAATGTCGGCCATCGTTCACCGAGATAACAGGCAGGTTAAGATCTATGTCTATGACCCTTCAAGGAAAGGGAAATTATCAGGCATGGCAGTTGAGACCTAGTAATGAACTTTGA

Protein sequence

>Msa0882280

MALNKTGKLIGNNTGDEHGLFPQYTQPEVRSGAANVHNNIPKQVGGKISANNVRDGVGGGRVLDTSRNRESRFGLNRENGHVRYEDLTNILGLKRMDSESFSDISDFIPNKQPAAQEIENGVSLNILSKTQKGDGENSGLGALRKTFGETICDKTGTRQGVSSPICRHERSQSNGFSGSGTLDDSLSGGKMKFLCSFGGKILPRPGDGKLRYVGGETHIISIRNDISWQELMNKTLGICSQPHTIKYQLPGEDLDALISVSSDEDLQNMIEEYHGLESHEGSQKLRIFLVPLGESEESPSADGSTVLQNDPDYQYVVALNGVLDHSPKKNISGPSLTNEANHSAKTFNFIPTVTSSPLEIRDGNSGMNALNLQSPLRISPTPVQVAGSSTGYIQLLGNNSCQGSIDSNASFVTAQIYSGNSSINTADCRYPQQPSATLVSDSHPCQHGNVGQPKNLNGQYFDDYSTVYASQSNGYGDEALSGTLHKDTIFYSGNSISQQIESHGMPHAFSDSQLHESGAKSGYCSQEGITPSLSLNLEKSQLSSLLGVSKVNLTEGQHDPFLHYPQIQSKIPNVESTEMHRWQGPASSSSYSESVRTDDRINKDSILSEKSTLSGSGFVERDVLENSLKSERMMINEENNPILKKDNKVYEGNPTVDYMSELYLLDTFPTNNVSAKIGMQNNWEQPCADTHPSSSGMMGFSLNNLMDKTPSDLHNISQKTSDGRNIDFSAGNIDLNSPIPQCAESPCDKSSERDHMFKFSFDPHSLKSAQIQPSQNQIATGFHDNPAINSESLYPAVLHDDVRPCLNLPVDGLDNSSKNISFAKAPSFLDDLITSLDQTVDQFKQEHSASGLSKVEGVILGQPKNSERCNDANRVEPFLVVNDVTGVVPARPKSSPVHTSHDFDDVGSDVSPSHTEVESTIPESDPEDFKDDQADVNDFLSDAMIAEMEASIYGLQIIRNADLEELMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLARDFWREAQILSNLHHPNVLAFYGIVPDGAGGTLATVTEYMVNGSLRHVLVKNYRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPIPERCDPEWRKLMEECWSREPECRPSFTEITGRLRSMSMTLQGKGNYQAWQLRPSNEL*