Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884020 | XP_003619170.1 | 80.882 | 1224 | 157 | 9 | 1 | 1193 | 1 | 1178 | 0.0 | 1908 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884020 | G7KIZ3 | 80.882 | 1224 | 157 | 9 | 1 | 1193 | 1 | 1178 | 0.0 | 1908 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0225480 | Msa0884020 | 0.809774 | 1.602367e-50 | -8.615850e-47 |
| Msa0483100 | Msa0884020 | 0.802352 | 5.844701e-49 | -8.615850e-47 |
| Msa0884020 | Msa1420950 | 0.815272 | 1.006319e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884020 | MtrunA17_Chr6g0464491 | 80.882 | 1224 | 157 | 9 | 1 | 1193 | 1 | 1178 | 0.0 | 1908 |
| Msa0884020 | MtrunA17_Chr6g0464501 | 53.093 | 194 | 72 | 4 | 367 | 541 | 3 | 196 | 6.42e-45 | 166 |
| Msa0884020 | MtrunA17_Chr6g0464501 | 48.366 | 153 | 63 | 4 | 405 | 551 | 165 | 307 | 6.05e-27 | 114 |
| Msa0884020 | MtrunA17_Chr6g0464501 | 47.000 | 100 | 45 | 2 | 622 | 718 | 4 | 98 | 1.82e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 220 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCTTCTTTGGCTTGTAAC+TGG | 0.075729 | 6_1:+36645590 | None:intergenic |
| AATCTTCTACATGATTCTTT+AGG | 0.186402 | 6_1:-36641654 | Msa0884020:CDS |
| TGCATACTAAAGTTATATTT+TGG | 0.200851 | 6_1:-36639995 | Msa0884020:three_prime_UTR |
| AATCTTGGAAATTGTGGATT+TGG | 0.213811 | 6_1:-36641960 | Msa0884020:CDS |
| GTCTTTAACGGCGCCTTCTT+TGG | 0.213846 | 6_1:+36645579 | None:intergenic |
| ACAACATCTCCAAGTGTATT+TGG | 0.216649 | 6_1:+36641185 | None:intergenic |
| ATCTTCTACATGATTCTTTA+GGG | 0.234773 | 6_1:-36641653 | Msa0884020:CDS |
| CTGGCTGCTTCCGAAGAATT+TGG | 0.235282 | 6_1:-36641801 | Msa0884020:CDS |
| AATATCTTCAACAGTTAAAT+TGG | 0.246897 | 6_1:+36642478 | None:intergenic |
| AATCTCAGTCTTACAATAAA+AGG | 0.251990 | 6_1:+36640061 | None:intergenic |
| GGTTGAACAAGTTCAAAATT+TGG | 0.254193 | 6_1:-36643762 | Msa0884020:CDS |
| TTTGAACCTTCAACTAATAA+AGG | 0.260978 | 6_1:-36641233 | Msa0884020:CDS |
| GTTGAAGATGTTTCTGAAAC+TGG | 0.275759 | 6_1:-36642149 | Msa0884020:CDS |
| ACAACTTTCTCTGATTTATC+AGG | 0.284763 | 6_1:-36646690 | Msa0884020:intron |
| AACATTTAATTTGTCTTTAA+CGG | 0.286553 | 6_1:+36645567 | None:intergenic |
| AATTGTAAGGATTGTGGATT+TGG | 0.294756 | 6_1:+36646941 | None:intergenic |
| CAAAATTTGGATGATAATAA+TGG | 0.302017 | 6_1:-36643749 | Msa0884020:CDS |
| CTTTCTTCTGAATCACTTGC+TGG | 0.306106 | 6_1:+36642872 | None:intergenic |
| AAATATTTCTTGTTGTTGTT+TGG | 0.309891 | 6_1:-36646833 | Msa0884020:five_prime_UTR |
| ATCTTTATAGATACTGTTGC+TGG | 0.310162 | 6_1:-36645372 | Msa0884020:intron |
| TCAGTCTGTTTCAGAAGAAT+TGG | 0.320681 | 6_1:-36642756 | Msa0884020:CDS |
| TGATTTATAGAAACTGCTTC+TGG | 0.321178 | 6_1:-36640407 | Msa0884020:intron |
| GCCTTCTTTGGCTTGTAACT+GGG | 0.331243 | 6_1:+36645591 | None:intergenic |
| AAAATTATGCATTGTGGATC+TGG | 0.332469 | 6_1:-36641585 | Msa0884020:CDS |
| TGATCTTGCTGTTCACAAAA+TGG | 0.335663 | 6_1:-36642372 | Msa0884020:CDS |
| ATCAAGTGAAGATGCAAATA+TGG | 0.336259 | 6_1:-36644455 | Msa0884020:CDS |
| TCCGATCACAATGTTGATTC+AGG | 0.337611 | 6_1:-36644292 | Msa0884020:intron |
| TTTATGTTCATCACTCAAAT+TGG | 0.340057 | 6_1:+36645329 | None:intergenic |
| TCTGATCACAAGGTTGATTC+AGG | 0.349545 | 6_1:-36645270 | Msa0884020:intron |
| CATACAGATTGGTGTTAATC+AGG | 0.353857 | 6_1:-36642963 | Msa0884020:CDS |
| CATTCTCTCCTGTACGTTAA+CGG | 0.354145 | 6_1:+36644534 | None:intergenic |
| CCCACTATGCTAAGTAATCT+AGG | 0.355557 | 6_1:-36642899 | Msa0884020:CDS |
| ACAAAGCGAAGATGAAAATA+TGG | 0.358550 | 6_1:-36643954 | Msa0884020:CDS |
| TTTGAGTGATGAACATAAAC+TGG | 0.361946 | 6_1:-36645325 | Msa0884020:CDS |
| TCTCCATGACTGATCCTTGA+TGG | 0.363259 | 6_1:+36643831 | None:intergenic |
| ATCATGTTACTATTATTTGA+TGG | 0.368375 | 6_1:-36640169 | Msa0884020:three_prime_UTR |
| AGCACTTGCTACTGATTTGA+TGG | 0.369430 | 6_1:-36642210 | Msa0884020:CDS |
| CATTGAATTACTTAGAAGTT+TGG | 0.370844 | 6_1:+36643024 | None:intergenic |
| CCACCCGAAGGATATGATAT+TGG | 0.371434 | 6_1:-36644058 | Msa0884020:CDS |
| TAATCTCGATGTTCATGAAT+TGG | 0.376660 | 6_1:-36643546 | Msa0884020:CDS |
| GATGTTCTTATGGAAGCTTC+AGG | 0.381836 | 6_1:-36645508 | Msa0884020:intron |
| CACTCTGGAGACTTCAATCT+TGG | 0.383506 | 6_1:-36641975 | Msa0884020:CDS |
| TGGTGCTGATGATGTTCTTA+TGG | 0.386400 | 6_1:-36645518 | Msa0884020:CDS |
| GACTTCAATCTTGGAAATTG+TGG | 0.387035 | 6_1:-36641966 | Msa0884020:CDS |
| CAAGGAATCCAGTGGCCGTT+TGG | 0.387539 | 6_1:-36643783 | Msa0884020:CDS |
| GCTTGTAACTGGGGTGGTGC+AGG | 0.392456 | 6_1:+36645601 | None:intergenic |
| ATGTTCTCTTTATGTATCAT+TGG | 0.392882 | 6_1:+36640335 | None:intergenic |
| TCAAAGCCTTTATTAGTTGA+AGG | 0.394693 | 6_1:+36641227 | None:intergenic |
| CCACCGGAGAAACATGTAAA+AGG | 0.397845 | 6_1:+36642054 | None:intergenic |
| TCATTAGTTTGAGGCAAAGT+TGG | 0.403118 | 6_1:+36640945 | None:intergenic |
| TTTGCCTCAAACTAATGAAA+TGG | 0.404725 | 6_1:-36640940 | Msa0884020:CDS |
| TACACTTGGAGATGTTGTTA+TGG | 0.410180 | 6_1:-36641180 | Msa0884020:CDS |
| TTATGATGACACTTGGTGTT+AGG | 0.415017 | 6_1:-36640116 | Msa0884020:three_prime_UTR |
| TTGACTTCACTTAACTGATC+TGG | 0.418008 | 6_1:+36645294 | None:intergenic |
| TTCTGCATTCCAACCTTCAC+CGG | 0.418312 | 6_1:+36642814 | None:intergenic |
| GGATCCAATATCATATCCTT+CGG | 0.418799 | 6_1:+36644054 | None:intergenic |
| GGTGGAATCGAGTTCACCTT+TGG | 0.419826 | 6_1:-36642036 | Msa0884020:CDS |
| ATCATTGGTGTAGCCTTTGA+TGG | 0.420869 | 6_1:+36640350 | None:intergenic |
| CCCGCATCAGAGAAATTGAT+TGG | 0.422893 | 6_1:-36643055 | Msa0884020:CDS |
| CAAACGGCCACTGGATTCCT+TGG | 0.422962 | 6_1:+36643784 | None:intergenic |
| TTCAACTAATAAAGGCTTTG+AGG | 0.423914 | 6_1:-36641225 | Msa0884020:CDS |
| GACAGAGAAGGTAAACAGTC+AGG | 0.424217 | 6_1:-36641120 | Msa0884020:CDS |
| AACTCCATTTCATTAGTTTG+AGG | 0.426895 | 6_1:+36640936 | None:intergenic |
| GGAGTAGTTATAATTTGATC+TGG | 0.429336 | 6_1:+36644331 | None:intergenic |
| AATGCAAATGAGTATCAATA+AGG | 0.433290 | 6_1:-36644515 | Msa0884020:CDS |
| ATAGATCTTCAAGATGTTTG+TGG | 0.434050 | 6_1:-36642689 | Msa0884020:CDS |
| AAAGGAATCGAGTGGCTGTT+TGG | 0.435005 | 6_1:-36642603 | Msa0884020:CDS |
| AAACAGCCACTCGATTCCTT+TGG | 0.438818 | 6_1:+36642605 | None:intergenic |
| CTTCAAGATGTTTGTGGAAG+CGG | 0.439216 | 6_1:-36642683 | Msa0884020:CDS |
| CAATGTTTCCTCCACATACA+AGG | 0.441824 | 6_1:+36644033 | None:intergenic |
| TCAACGTTCTTCAAATTCGC+TGG | 0.442283 | 6_1:+36646722 | None:intergenic |
| TTAGCAACAACGGATTCATC+AGG | 0.442284 | 6_1:+36641528 | None:intergenic |
| TTACTCGTCTCTACTACATT+AGG | 0.444361 | 6_1:+36643566 | None:intergenic |
| CCAATCAATTTCTCTGATGC+GGG | 0.446761 | 6_1:+36643055 | None:intergenic |
| TAATCATTTATGATTGACTC+TGG | 0.448546 | 6_1:+36641678 | None:intergenic |
| TTGTTCAACCAAACGGCCAC+TGG | 0.449150 | 6_1:+36643775 | None:intergenic |
| GAACATTAAATTTGACAAGA+AGG | 0.452593 | 6_1:-36640318 | Msa0884020:CDS |
| CAGTCTGTTTCAGAAGAATT+GGG | 0.455305 | 6_1:-36642755 | Msa0884020:CDS |
| ACTTCACGTAATGGATCAAT+TGG | 0.458948 | 6_1:+36642404 | None:intergenic |
| CTTGGTGCATGACTCTCATA+TGG | 0.459254 | 6_1:+36641855 | None:intergenic |
| CATGATGGTATTGGTGGAGT+TGG | 0.464433 | 6_1:-36641062 | Msa0884020:CDS |
| CTGATACAGTGAGCCGGAAA+AGG | 0.467069 | 6_1:-36641016 | Msa0884020:CDS |
| TGCAGATACAAGCGGTGTAA+AGG | 0.469063 | 6_1:-36642243 | Msa0884020:intron |
| GAGGGCTATTGATGCTACCT+TGG | 0.469374 | 6_1:+36642102 | None:intergenic |
| ATAAATCAGAGAAAGTTGTT+TGG | 0.469679 | 6_1:+36646694 | None:intergenic |
| TCGGACTTGACTTCACTTAG+TGG | 0.469943 | 6_1:+36644310 | None:intergenic |
| GAATTTGAAGAACGTTGAAA+TGG | 0.470034 | 6_1:-36646717 | Msa0884020:CDS |
| ATTTCTGTGTTACAAATTCG+TGG | 0.472337 | 6_1:+36646852 | None:intergenic |
| TTTGACAAGAAGGAAGAAGT+TGG | 0.475354 | 6_1:-36640308 | Msa0884020:CDS |
| GTCTGCCTTGATGCATCAAC+CGG | 0.477611 | 6_1:-36642524 | Msa0884020:CDS |
| GATCCAATATCATATCCTTC+GGG | 0.481996 | 6_1:+36644055 | None:intergenic |
| TTTGAACTTGTTCAACCAAA+CGG | 0.483682 | 6_1:+36643768 | None:intergenic |
| TTGACAAGAAGGAAGAAGTT+GGG | 0.485884 | 6_1:-36640307 | Msa0884020:CDS |
| GAAGATGAAAATATGGTTGA+GGG | 0.486163 | 6_1:-36643947 | Msa0884020:CDS |
| CAGAGTTATTGCAAGAAACA+TGG | 0.488192 | 6_1:-36646749 | Msa0884020:CDS |
| GATGTTTGTGGAAGCGGAAA+CGG | 0.490688 | 6_1:-36642677 | Msa0884020:CDS |
| TTCTTTAGATGTTTCTTCCA+AGG | 0.497807 | 6_1:-36643801 | Msa0884020:CDS |
| TCAGTAGGCAGAACTTGAAC+TGG | 0.500216 | 6_1:+36643590 | None:intergenic |
| CATTTATGATTGACTCTGGA+GGG | 0.500922 | 6_1:+36641682 | None:intergenic |
| GCATCTTCACTTGATGATGC+AGG | 0.501254 | 6_1:+36644463 | None:intergenic |
| GAATCGAGTTCACCTTTGGT+TGG | 0.501916 | 6_1:-36642032 | Msa0884020:CDS |
| TGATAATATTTGTGTTCTCT+CGG | 0.502134 | 6_1:-36642558 | Msa0884020:CDS |
| CATTGGATCCGTTAACGTAC+AGG | 0.502790 | 6_1:-36644542 | Msa0884020:CDS |
| CTAGGAATAAATTTGCTAAG+AGG | 0.506638 | 6_1:-36640274 | Msa0884020:CDS |
| CGAAGATGAAAATATGGTTG+AGG | 0.509235 | 6_1:-36643948 | Msa0884020:CDS |
| AAATGTTGAAGTTATAGACT+TGG | 0.509452 | 6_1:-36645551 | Msa0884020:CDS |
| TCTAGTGTTGAAAATTCAGA+TGG | 0.511925 | 6_1:-36643617 | Msa0884020:CDS |
| TCGAGTTCACCTTTGGTTGG+AGG | 0.512627 | 6_1:-36642029 | Msa0884020:CDS |
| TCATCTGATAATTTAACACT+TGG | 0.513510 | 6_1:+36641837 | None:intergenic |
| ACATTGATCCCGGTGAAGGT+TGG | 0.515644 | 6_1:-36642823 | Msa0884020:CDS |
| TTAGTCTCAACTTCACGTAA+TGG | 0.516070 | 6_1:+36642395 | None:intergenic |
| GCATCAAGGCACATTGCAGC+AGG | 0.519118 | 6_1:+36643713 | None:intergenic |
| GGTAGCATCAATAGCCCTCA+TGG | 0.521554 | 6_1:-36642098 | Msa0884020:CDS |
| GACGATAATGTTGTGCACTC+TGG | 0.521848 | 6_1:-36641990 | Msa0884020:CDS |
| GGAGGAAGAAGTGGCGGACG+TGG | 0.522286 | 6_1:-36642189 | Msa0884020:CDS |
| GATGTTCATGATGGTATTGG+TGG | 0.524467 | 6_1:-36641068 | Msa0884020:CDS |
| CAGTGAGCCGGAAAAGGAAA+AGG | 0.524583 | 6_1:-36641010 | Msa0884020:CDS |
| GAAAATCCAATGCACTCCTC+AGG | 0.525773 | 6_1:+36641266 | None:intergenic |
| TGATAAATCCATTGCTGCCG+AGG | 0.526272 | 6_1:-36641916 | Msa0884020:CDS |
| TCTGATGTTCATGATGGTAT+TGG | 0.526349 | 6_1:-36641071 | Msa0884020:CDS |
| ATCATCAGAAAAGACATGTA+TGG | 0.528912 | 6_1:-36641297 | Msa0884020:CDS |
| TTGTTGCTAAGAATATTGAT+TGG | 0.530619 | 6_1:-36641515 | Msa0884020:CDS |
| CCACACATGTCGATGCATCA+AGG | 0.530686 | 6_1:+36643699 | None:intergenic |
| AGATGATGATGATCTTGTAC+TGG | 0.532777 | 6_1:-36641820 | Msa0884020:CDS |
| AAGTTGGGTCAGTGATGTCT+AGG | 0.534301 | 6_1:-36640292 | Msa0884020:CDS |
| TTTCACAGTCATCTTCAAGA+AGG | 0.535875 | 6_1:+36641751 | None:intergenic |
| TCTTTATAGATACTGTTGCT+GGG | 0.537589 | 6_1:-36645371 | Msa0884020:intron |
| CCTAGATTACTTAGCATAGT+GGG | 0.539863 | 6_1:+36642899 | None:intergenic |
| GAAGTTGGACTCACCATCAA+AGG | 0.540463 | 6_1:-36640363 | Msa0884020:CDS |
| CCCTAGATTACTTAGCATAG+TGG | 0.546002 | 6_1:+36642898 | None:intergenic |
| ACAGAGGGACAAGTTGCAAA+CGG | 0.548190 | 6_1:-36642722 | Msa0884020:CDS |
| CCACTATGCTAAGTAATCTA+GGG | 0.548467 | 6_1:-36642898 | Msa0884020:CDS |
| ACCAATCAATTTCTCTGATG+CGG | 0.548502 | 6_1:+36643054 | None:intergenic |
| ATCAGTATCCTCGGCAGCAA+TGG | 0.549143 | 6_1:+36641908 | None:intergenic |
| AGATGCTTATCATAAGAAGT+TGG | 0.549508 | 6_1:-36640378 | Msa0884020:CDS |
| TGATGAAGATACGAGTGAAA+CGG | 0.549957 | 6_1:-36644392 | Msa0884020:CDS |
| CCTTTCTGTACATGTAGTGT+TGG | 0.550158 | 6_1:-36640220 | Msa0884020:three_prime_UTR |
| TCGTTCATGTCAACTGCACT+AGG | 0.551375 | 6_1:+36642791 | None:intergenic |
| CCTTCTTTGGCTTGTAACTG+GGG | 0.551573 | 6_1:+36645592 | None:intergenic |
| GATCAGATCAATATCCATCA+AGG | 0.555030 | 6_1:-36643845 | Msa0884020:CDS |
| GGATTCATCAGGGAAACAAA+AGG | 0.555597 | 6_1:+36641539 | None:intergenic |
| GCAGATCCTGAGGAGTGCAT+TGG | 0.556026 | 6_1:-36641272 | Msa0884020:CDS |
| TGAAGGTTCAAAGTCATTAG+CGG | 0.557731 | 6_1:+36641244 | None:intergenic |
| TTTCTGTGTTACAAATTCGT+GGG | 0.558710 | 6_1:+36646853 | None:intergenic |
| GTTCATGAATTGGATGTCAC+AGG | 0.559027 | 6_1:-36643536 | Msa0884020:intron |
| AAGGTAAACAGTCAGGGAGA+AGG | 0.559334 | 6_1:-36641113 | Msa0884020:CDS |
| TCTGCATTCCAACCTTCACC+GGG | 0.560515 | 6_1:+36642815 | None:intergenic |
| TCGCACCGGTTGATGCATCA+AGG | 0.560691 | 6_1:+36642519 | None:intergenic |
| ACCTGAATCAACATTGTGAT+CGG | 0.561891 | 6_1:+36644291 | None:intergenic |
| TTGGGTAATGATTTGACAGA+GGG | 0.564430 | 6_1:-36642737 | Msa0884020:CDS |
| TCACGTAATGGATCAATTGG+CGG | 0.564683 | 6_1:+36642407 | None:intergenic |
| ATCAACCTGATACAGTGAGC+CGG | 0.565917 | 6_1:-36641022 | Msa0884020:CDS |
| TGAACTTGTCCTCCAACCAA+AGG | 0.565961 | 6_1:+36642020 | None:intergenic |
| GAGAACTCTGATGTTCATGA+TGG | 0.566348 | 6_1:-36641077 | Msa0884020:CDS |
| TCTACTACATTAGGATCAGT+AGG | 0.567946 | 6_1:+36643575 | None:intergenic |
| TCAAGTGTTCAATATTCAGA+TGG | 0.571714 | 6_1:-36641447 | Msa0884020:intron |
| GATGTTCATGTAGATTCTAG+TGG | 0.572566 | 6_1:-36643896 | Msa0884020:CDS |
| GTTCACAAAATGGCTGCCAT+AGG | 0.572725 | 6_1:-36642362 | Msa0884020:intron |
| CCCCAGTTACAAGCCAAAGA+AGG | 0.572835 | 6_1:-36645592 | Msa0884020:CDS |
| AGAGTTATTGCAAGAAACAT+GGG | 0.573085 | 6_1:-36646748 | Msa0884020:CDS |
| ATCAATATTCTTAGCAACAA+CGG | 0.573323 | 6_1:+36641518 | None:intergenic |
| TGATGAACATAAACTGGAGG+AGG | 0.576066 | 6_1:-36645319 | Msa0884020:CDS |
| TGATTTGATGGAGGAAGAAG+TGG | 0.577982 | 6_1:-36642198 | Msa0884020:CDS |
| TTCTGCTTAAGATCTTGAAG+AGG | 0.580284 | 6_1:+36640248 | None:intergenic |
| TAGCCCTCATGTTTCTCCAA+AGG | 0.580807 | 6_1:-36642621 | Msa0884020:CDS |
| GGATGATAATAATGGTGCTA+TGG | 0.582067 | 6_1:-36643741 | Msa0884020:CDS |
| CCACATGAAGGAGATGACAT+TGG | 0.584045 | 6_1:-36644559 | Msa0884020:CDS |
| GATTCCTTTGGAGAAACATG+AGG | 0.584993 | 6_1:+36642617 | None:intergenic |
| GAGAACATTGATCCCGGTGA+AGG | 0.586307 | 6_1:-36642827 | Msa0884020:CDS |
| TTATGATTTATGATGACACT+TGG | 0.590270 | 6_1:-36640123 | Msa0884020:three_prime_UTR |
| TCATTTATGATTGACTCTGG+AGG | 0.591929 | 6_1:+36641681 | None:intergenic |
| GATGAAGCTCTAAATTCAAG+TGG | 0.593816 | 6_1:-36641714 | Msa0884020:CDS |
| TCTTCTACATGATTCTTTAG+GGG | 0.595291 | 6_1:-36641652 | Msa0884020:CDS |
| AGACGCTGACTTCAGTTCAC+GGG | 0.598300 | 6_1:+36644126 | None:intergenic |
| CAATCAATTTCTCTGATGCG+GGG | 0.599037 | 6_1:+36643056 | None:intergenic |
| ACAAATTCGTGGGAACAAGA+AGG | 0.600175 | 6_1:+36646863 | None:intergenic |
| TATCCATCAAGGATCAGTCA+TGG | 0.602759 | 6_1:-36643834 | Msa0884020:CDS |
| AATAAAGAGAACATTGATCC+CGG | 0.603294 | 6_1:-36642833 | Msa0884020:CDS |
| AAGACGCTGACTTCAGTTCA+CGG | 0.603657 | 6_1:+36644125 | None:intergenic |
| TCTTTGGCTTGTAACTGGGG+TGG | 0.608031 | 6_1:+36645595 | None:intergenic |
| ACAGAGAAGGTAAACAGTCA+GGG | 0.609516 | 6_1:-36641119 | Msa0884020:CDS |
| CCAACACTACATGTACAGAA+AGG | 0.610432 | 6_1:+36640220 | None:intergenic |
| TGATATTGGATCCTTGTATG+TGG | 0.610439 | 6_1:-36644044 | Msa0884020:CDS |
| AAGTTGAAATCTCCACATGA+AGG | 0.611149 | 6_1:-36644571 | Msa0884020:CDS |
| TAGCAACAACGGATTCATCA+GGG | 0.613275 | 6_1:+36641529 | None:intergenic |
| TGTTTACATTCGATCCATGA+GGG | 0.614124 | 6_1:+36642084 | None:intergenic |
| GATGAAGCTGTTAACAAATG+TGG | 0.621422 | 6_1:-36642650 | Msa0884020:CDS |
| AGCCACATCAGCGTTCTCAT+CGG | 0.625153 | 6_1:+36643670 | None:intergenic |
| CCAATGTCATCTCCTTCATG+TGG | 0.625278 | 6_1:+36644559 | None:intergenic |
| AATCAATTTCTCTGATGCGG+GGG | 0.626859 | 6_1:+36643057 | None:intergenic |
| GCAAATTGACATGACAGAGA+AGG | 0.627297 | 6_1:-36641132 | Msa0884020:CDS |
| AAAGGTGAACTCGATTCCAC+CGG | 0.634974 | 6_1:+36642038 | None:intergenic |
| TCTTCACGAAAGATGAGTCA+AGG | 0.636715 | 6_1:-36644106 | Msa0884020:CDS |
| TGAAGTCAAGTCTGATCACA+AGG | 0.637217 | 6_1:-36645280 | Msa0884020:CDS |
| GTGGAGGAAAACATACAGAT+TGG | 0.638500 | 6_1:-36642974 | Msa0884020:CDS |
| ATTCCTTTGGAGAAACATGA+GGG | 0.638761 | 6_1:+36642618 | None:intergenic |
| ATAGACTTGGACTCAGACAG+TGG | 0.638761 | 6_1:-36645538 | Msa0884020:CDS |
| ATGTATGGTTGCAGATCCTG+AGG | 0.640708 | 6_1:-36641282 | Msa0884020:CDS |
| ACTTGCTACTGATTTGATGG+AGG | 0.641753 | 6_1:-36642207 | Msa0884020:CDS |
| TTGTTTACATTCGATCCATG+AGG | 0.647911 | 6_1:+36642083 | None:intergenic |
| GATGATAAAATTATGCATTG+TGG | 0.651559 | 6_1:-36641591 | Msa0884020:CDS |
| GTTTCTTCCAAGGAATCCAG+TGG | 0.652461 | 6_1:-36643791 | Msa0884020:CDS |
| AGCAATGAAGCTATAAACCA+AGG | 0.652795 | 6_1:-36642119 | Msa0884020:CDS |
| CCTTGATGCATCGACATGTG+TGG | 0.652939 | 6_1:-36643699 | Msa0884020:CDS |
| TCAGGCAATGCAGATACAAG+TGG | 0.653956 | 6_1:-36643115 | Msa0884020:intron |
| TGGGAATGCAGATGCTTGTG+AGG | 0.655885 | 6_1:-36644641 | Msa0884020:CDS |
| TGTTCAAGACACTCTAGATG+AGG | 0.660475 | 6_1:-36643648 | Msa0884020:CDS |
| AAGTGAAGATGCAAATATGG+TGG | 0.660926 | 6_1:-36644452 | Msa0884020:CDS |
| TACCGATGAGAACGCTGATG+TGG | 0.663581 | 6_1:-36643672 | Msa0884020:CDS |
| GATGTTTCTGAAACTGGCAA+CGG | 0.665868 | 6_1:-36642143 | Msa0884020:CDS |
| CCAATATCATATCCTTCGGG+TGG | 0.666022 | 6_1:+36644058 | None:intergenic |
| TTTGATGGAGGAAGAAGTGG+CGG | 0.667077 | 6_1:-36642195 | Msa0884020:CDS |
| TCATGATCAAGAGAAAACGA+TGG | 0.669504 | 6_1:-36642930 | Msa0884020:CDS |
| CTAGTGTTGAAAATTCAGAT+GGG | 0.674011 | 6_1:-36643616 | Msa0884020:CDS |
| GTTTCTCCAAAGGAATCGAG+TGG | 0.684022 | 6_1:-36642611 | Msa0884020:CDS |
| ATTGGGTAATGATTTGACAG+AGG | 0.685670 | 6_1:-36642738 | Msa0884020:CDS |
| GAGTGATGAACATAAACTGG+AGG | 0.688381 | 6_1:-36645322 | Msa0884020:CDS |
| AAGTTGAAATCACCACCCGA+AGG | 0.692864 | 6_1:-36644070 | Msa0884020:CDS |
| GAGTGATGCAAATTCAGACG+AGG | 0.711767 | 6_1:-36640988 | Msa0884020:CDS |
| TATTGGATCCTTGTATGTGG+AGG | 0.722178 | 6_1:-36644041 | Msa0884020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAAAAAAAAAAAAAA+AGG | + | chr6_1:36646408-36646427 | None:intergenic | 0.0% |
| !! | AGAAATTCATTAAATATAAA+TGG | + | chr6_1:36641515-36641534 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAATCATCTTATA+TGG | + | chr6_1:36643519-36643538 | None:intergenic | 10.0% |
| !! | CATTTAATTATCATTAAATT+TGG | - | chr6_1:36643550-36643569 | Msa0884020:CDS | 10.0% |
| !!! | TTTTGTTTTGAAATTTGAAA+CGG | + | chr6_1:36640009-36640028 | None:intergenic | 15.0% |
| !!! | AATGTTTTTATTTTATTCGT+GGG | + | chr6_1:36640087-36640106 | None:intergenic | 15.0% |
| !!! | TTTTTTGTGAATAGAATTTT+TGG | - | chr6_1:36640380-36640399 | Msa0884020:CDS | 15.0% |
| !!! | TTTTTGTGAATAGAATTTTT+GGG | - | chr6_1:36640381-36640400 | Msa0884020:CDS | 15.0% |
| !! | AAAATTAAAACTTGACAAAA+GGG | + | chr6_1:36640434-36640453 | None:intergenic | 15.0% |
| !! | AAAAATTAAAACTTGACAAA+AGG | + | chr6_1:36640435-36640454 | None:intergenic | 15.0% |
| !! | AAATCAAAACAACTAAAAAA+CGG | + | chr6_1:36640461-36640480 | None:intergenic | 15.0% |
| !!! | TTTTAGTTGTTTTGATTTAT+AGG | - | chr6_1:36640463-36640482 | Msa0884020:intron | 15.0% |
| !!! | TTTAGTTGTTTTGATTTATA+GGG | - | chr6_1:36640464-36640483 | Msa0884020:intron | 15.0% |
| !!! | GATTAGTTTTTTAACAAAAA+TGG | + | chr6_1:36640581-36640600 | None:intergenic | 15.0% |
| !!! | CTGTTTAAATTTGTTTATAA+TGG | - | chr6_1:36640972-36640991 | Msa0884020:CDS | 15.0% |
| !!! | AACATTTAATTTGTCTTTAA+CGG | + | chr6_1:36641406-36641425 | None:intergenic | 15.0% |
| !! | AATTTCAATCAAGAAATATA+TGG | + | chr6_1:36641807-36641826 | None:intergenic | 15.0% |
| !! | TATATTTCTTGATTGAAATT+AGG | - | chr6_1:36641807-36641826 | Msa0884020:CDS | 15.0% |
| !! | ATATTTCTTGATTGAAATTA+GGG | - | chr6_1:36641808-36641827 | Msa0884020:CDS | 15.0% |
| !! | CAATCTATAACTATTTATAA+AGG | - | chr6_1:36641929-36641948 | Msa0884020:CDS | 15.0% |
| !! | TGTTATAAGAATAATAATCA+AGG | + | chr6_1:36641998-36642017 | None:intergenic | 15.0% |
| !!! | ATTATTCTTATAACAACTTT+TGG | - | chr6_1:36642003-36642022 | Msa0884020:CDS | 15.0% |
| !!! | ATCACAAACATTTATATTTT+AGG | - | chr6_1:36642798-36642817 | Msa0884020:CDS | 15.0% |
| !! | AAAACAAATAAATTTACCTA+TGG | + | chr6_1:36644627-36644646 | None:intergenic | 15.0% |
| !!! | GAATGTTTTTATTTTATTCG+TGG | + | chr6_1:36640088-36640107 | None:intergenic | 20.0% |
| !!! | AAATATTTCTTGTTGTTGTT+TGG | - | chr6_1:36640137-36640156 | Msa0884020:three_prime_UTR | 20.0% |
| !! | ACTGAAAAATTGTGAAAAAA+AGG | + | chr6_1:36640338-36640357 | None:intergenic | 20.0% |
| !! | AATCAAAACAACTAAAAAAC+GGG | + | chr6_1:36640460-36640479 | None:intergenic | 20.0% |
| !!! | TTGTTTATGGTTTTTCATTA+TGG | - | chr6_1:36640727-36640746 | Msa0884020:intron | 20.0% |
| !! | TTAATTTAATCCCTCAAATT+TGG | - | chr6_1:36640882-36640901 | Msa0884020:intron | 20.0% |
| !!! | TTTTGAACTATTTCTAAATC+AGG | - | chr6_1:36640918-36640937 | Msa0884020:CDS | 20.0% |
| !!! | TCATATTCTCAACATTTTAT+CGG | - | chr6_1:36641204-36641223 | Msa0884020:CDS | 20.0% |
| !!! | TAAACTTTGTTTATGTAGTT+TGG | - | chr6_1:36641748-36641767 | Msa0884020:CDS | 20.0% |
| !!! | ATAAAGGCAATTACAATTTT+TGG | - | chr6_1:36641945-36641964 | Msa0884020:CDS | 20.0% |
| !! | AAAAAAAAATCAAGGATTAG+AGG | + | chr6_1:36642171-36642190 | None:intergenic | 20.0% |
| !!! | CTAATCCTTGATTTTTTTTT+TGG | - | chr6_1:36642171-36642190 | Msa0884020:CDS | 20.0% |
| !! | ATGTTCCAAAAAAAAAATCA+AGG | + | chr6_1:36642179-36642198 | None:intergenic | 20.0% |
| !! | AATTACAACAAAATCAACTA+TGG | + | chr6_1:36642756-36642775 | None:intergenic | 20.0% |
| !! | CAAAATTTGGATGATAATAA+TGG | - | chr6_1:36643221-36643240 | Msa0884020:intron | 20.0% |
| !! | AATATCTTCAACAGTTAAAT+TGG | + | chr6_1:36644495-36644514 | None:intergenic | 20.0% |
| !!! | TTGTTTTGCCAAATAATTTA+TGG | - | chr6_1:36644640-36644659 | Msa0884020:CDS | 20.0% |
| !! | CATTATGACCATAAATTATT+TGG | + | chr6_1:36644651-36644670 | None:intergenic | 20.0% |
| !! | ATGCAAAAAATTTCATATGA+AGG | - | chr6_1:36645493-36645512 | Msa0884020:intron | 20.0% |
| !!! | TAAAGTATAAATTTTGAGCA+AGG | - | chr6_1:36646093-36646112 | Msa0884020:intron | 20.0% |
| !! | ATATAGGAATTAATCGATAT+AGG | - | chr6_1:36646441-36646460 | Msa0884020:intron | 20.0% |
| !!! | GTTACTTACTGTTTTTATTT+TGG | - | chr6_1:36646772-36646791 | Msa0884020:CDS | 20.0% |
| !! | ATCATGTTACTATTATTTGA+TGG | - | chr6_1:36646801-36646820 | Msa0884020:exon | 20.0% |
| !!! | AGTTAAGAAGTTTTTGAAGA+AGG | + | chr6_1:36640060-36640079 | None:intergenic | 25.0% |
| ! | GAGAGAAAACAAAAAAAAGA+TGG | - | chr6_1:36640169-36640188 | Msa0884020:three_prime_UTR | 25.0% |
| ! | ATAAATCAGAGAAAGTTGTT+TGG | + | chr6_1:36640279-36640298 | None:intergenic | 25.0% |
| !!! | AGTTTAGATCTGTTTGTTTT+TGG | - | chr6_1:36640624-36640643 | Msa0884020:intron | 25.0% |
| !! | ATCTAAAATGAGAAGTTGTT+TGG | - | chr6_1:36640692-36640711 | Msa0884020:intron | 25.0% |
| !! | TCTAAAATGAGAAGTTGTTT+GGG | - | chr6_1:36640693-36640712 | Msa0884020:intron | 25.0% |
| ! | GTTTATAGTATAAGACAAAC+AGG | - | chr6_1:36640830-36640849 | Msa0884020:intron | 25.0% |
| ! | AATTAAGTTTCACATATTCC+TGG | + | chr6_1:36640868-36640887 | None:intergenic | 25.0% |
| ! | TCTAATAAGTCCAAATTTGA+GGG | + | chr6_1:36640895-36640914 | None:intergenic | 25.0% |
| ! | GGAACTTAATTAAACTATTG+TGG | - | chr6_1:36640939-36640958 | Msa0884020:CDS | 25.0% |
| ! | ATTCTGTTTAATTATGCACA+GGG | - | chr6_1:36641330-36641349 | Msa0884020:intron | 25.0% |
| ! | AAATGTTGAAGTTATAGACT+TGG | - | chr6_1:36641419-36641438 | Msa0884020:intron | 25.0% |
| ! | TTTATGTTCATCACTCAAAT+TGG | + | chr6_1:36641644-36641663 | None:intergenic | 25.0% |
| ! | GGGTATTATTGTAATCTAAA+TGG | + | chr6_1:36641864-36641883 | None:intergenic | 25.0% |
| ! | TTAAATACTAGCAGAAAGAT+TGG | + | chr6_1:36642033-36642052 | None:intergenic | 25.0% |
| ! | AATCTTTCTGCTAGTATTTA+AGG | - | chr6_1:36642032-36642051 | Msa0884020:CDS | 25.0% |
| ! | ATCTTTCTGCTAGTATTTAA+GGG | - | chr6_1:36642033-36642052 | Msa0884020:CDS | 25.0% |
| ! | TTTGATATAGACAAGTACTA+TGG | - | chr6_1:36642236-36642255 | Msa0884020:CDS | 25.0% |
| !! | ATCTCAATCCTTTACATTTT+AGG | - | chr6_1:36642297-36642316 | Msa0884020:intron | 25.0% |
| !! | TCTCAATCCTTTACATTTTA+GGG | - | chr6_1:36642298-36642317 | Msa0884020:intron | 25.0% |
| ! | AATGCAAATGAGTATCAATA+AGG | - | chr6_1:36642455-36642474 | Msa0884020:CDS | 25.0% |
| ! | ACTATTGTACACTTTGATAT+AGG | - | chr6_1:36642724-36642743 | Msa0884020:CDS | 25.0% |
| ! | TGAGAAAAATAAAGACAATC+TGG | - | chr6_1:36642977-36642996 | Msa0884020:CDS | 25.0% |
| ! | TCTTCACACATAAATATTTG+GGG | + | chr6_1:36643475-36643494 | None:intergenic | 25.0% |
| ! | CTCTTCACACATAAATATTT+GGG | + | chr6_1:36643476-36643495 | None:intergenic | 25.0% |
| ! | ACTCTTCACACATAAATATT+TGG | + | chr6_1:36643477-36643496 | None:intergenic | 25.0% |
| ! | AAGAGTAAATTGAATATGAC+AGG | - | chr6_1:36643491-36643510 | Msa0884020:intron | 25.0% |
| !! | TCATTAAATTTGGAGTTTGA+TGG | - | chr6_1:36643560-36643579 | Msa0884020:CDS | 25.0% |
| ! | TTAACAATCATCTTGCATTT+AGG | - | chr6_1:36643787-36643806 | Msa0884020:CDS | 25.0% |
| ! | CATTGAATTACTTAGAAGTT+TGG | + | chr6_1:36643949-36643968 | None:intergenic | 25.0% |
| ! | TCAAAAACTTCAATATCTCT+TGG | + | chr6_1:36643975-36643994 | None:intergenic | 25.0% |
| ! | TGATAATATTTGTGTTCTCT+CGG | - | chr6_1:36644412-36644431 | Msa0884020:CDS | 25.0% |
| ! | TCATCTGATAATTTAACACT+TGG | + | chr6_1:36645136-36645155 | None:intergenic | 25.0% |
| !! | CAACTTTTTACCAAATTCTT+CGG | + | chr6_1:36645182-36645201 | None:intergenic | 25.0% |
| !! | TAATCATTTATGATTGACTC+TGG | + | chr6_1:36645295-36645314 | None:intergenic | 25.0% |
| ! | AATCTTCTACATGATTCTTT+AGG | - | chr6_1:36645316-36645335 | Msa0884020:CDS | 25.0% |
| ! | ATCTTCTACATGATTCTTTA+GGG | - | chr6_1:36645317-36645336 | Msa0884020:CDS | 25.0% |
| !!! | GATTTCAGTTCATATTTTGA+TGG | - | chr6_1:36645340-36645359 | Msa0884020:CDS | 25.0% |
| !! | CAATGCATAATTTTATCATC+AGG | + | chr6_1:36645379-36645398 | None:intergenic | 25.0% |
| ! | GATGATAAAATTATGCATTG+TGG | - | chr6_1:36645379-36645398 | Msa0884020:intron | 25.0% |
| ! | ATCAATATTCTTAGCAACAA+CGG | + | chr6_1:36645455-36645474 | None:intergenic | 25.0% |
| ! | TTGTTGCTAAGAATATTGAT+TGG | - | chr6_1:36645455-36645474 | Msa0884020:intron | 25.0% |
| ! | TTTGAACCTTCAACTAATAA+AGG | - | chr6_1:36645737-36645756 | Msa0884020:intron | 25.0% |
| ! | AAAAATGCATTCTTCATATC+TGG | + | chr6_1:36646207-36646226 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAGGTCTGCAA+CGG | + | chr6_1:36646398-36646417 | None:intergenic | 25.0% |
| ! | TGCTTATGCAATGTTTAAAA+AGG | + | chr6_1:36646504-36646523 | None:intergenic | 25.0% |
| ! | ATGTTCTCTTTATGTATCAT+TGG | + | chr6_1:36646638-36646657 | None:intergenic | 25.0% |
| ! | GAACATTAAATTTGACAAGA+AGG | - | chr6_1:36646652-36646671 | Msa0884020:intron | 25.0% |
| ! | TTATGATTTATGATGACACT+TGG | - | chr6_1:36646847-36646866 | Msa0884020:five_prime_UTR | 25.0% |
| ! | AATCTCAGTCTTACAATAAA+AGG | + | chr6_1:36646912-36646931 | None:intergenic | 25.0% |
| AATTGTAAGGATTGTGGATT+TGG | + | chr6_1:36640032-36640051 | None:intergenic | 30.0% | |
| !! | GTTTTGAATTGTAAGGATTG+TGG | + | chr6_1:36640038-36640057 | None:intergenic | 30.0% |
| !!! | GAAGAAGGTTTTGAATTGTA+AGG | + | chr6_1:36640045-36640064 | None:intergenic | 30.0% |
| TTTCTGTGTTACAAATTCGT+GGG | + | chr6_1:36640120-36640139 | None:intergenic | 30.0% | |
| ATTTCTGTGTTACAAATTCG+TGG | + | chr6_1:36640121-36640140 | None:intergenic | 30.0% | |
| AGAGTTATTGCAAGAAACAT+GGG | - | chr6_1:36640222-36640241 | Msa0884020:three_prime_UTR | 30.0% | |
| GAATTTGAAGAACGTTGAAA+TGG | - | chr6_1:36640253-36640272 | Msa0884020:CDS | 30.0% | |
| ACAACTTTCTCTGATTTATC+AGG | - | chr6_1:36640280-36640299 | Msa0884020:CDS | 30.0% | |
| GGTTTAGATCTGTTTGTTTA+TGG | - | chr6_1:36640714-36640733 | Msa0884020:intron | 30.0% | |
| GTCTAATAAGTCCAAATTTG+AGG | + | chr6_1:36640896-36640915 | None:intergenic | 30.0% | |
| ! | TCAGTTGTTACATTGTTTCT+TGG | - | chr6_1:36641057-36641076 | Msa0884020:CDS | 30.0% |
| ! | CAGTTGTTACATTGTTTCTT+GGG | - | chr6_1:36641058-36641077 | Msa0884020:CDS | 30.0% |
| ! | AGTTGTTACATTGTTTCTTG+GGG | - | chr6_1:36641059-36641078 | Msa0884020:CDS | 30.0% |
| !! | ACATTTTCAATCAGAAGTGT+CGG | + | chr6_1:36641140-36641159 | None:intergenic | 30.0% |
| GATTCTGTTTAATTATGCAC+AGG | - | chr6_1:36641329-36641348 | Msa0884020:intron | 30.0% | |
| ATCTTTATAGATACTGTTGC+TGG | - | chr6_1:36641598-36641617 | Msa0884020:CDS | 30.0% | |
| TCTTTATAGATACTGTTGCT+GGG | - | chr6_1:36641599-36641618 | Msa0884020:CDS | 30.0% | |
| TTTGAGTGATGAACATAAAC+TGG | - | chr6_1:36641645-36641664 | Msa0884020:CDS | 30.0% | |
| ATCAAAATGAAAGCGATAAC+AGG | + | chr6_1:36642222-36642241 | None:intergenic | 30.0% | |
| GGAGAAAAATGAAGATAATC+AGG | - | chr6_1:36642476-36642495 | Msa0884020:CDS | 30.0% | |
| ATCAAGTGAAGATGCAAATA+TGG | - | chr6_1:36642515-36642534 | Msa0884020:CDS | 30.0% | |
| GGAGTAGTTATAATTTGATC+TGG | + | chr6_1:36642642-36642661 | None:intergenic | 30.0% | |
| ACAAAGCGAAGATGAAAATA+TGG | - | chr6_1:36643016-36643035 | Msa0884020:CDS | 30.0% | |
| GAAGATGAAAATATGGTTGA+GGG | - | chr6_1:36643023-36643042 | Msa0884020:CDS | 30.0% | |
| TTCTTTAGATGTTTCTTCCA+AGG | - | chr6_1:36643169-36643188 | Msa0884020:intron | 30.0% | |
| ! | TTTGAACTTGTTCAACCAAA+CGG | + | chr6_1:36643205-36643224 | None:intergenic | 30.0% |
| GGTTGAACAAGTTCAAAATT+TGG | - | chr6_1:36643208-36643227 | Msa0884020:intron | 30.0% | |
| ! | TCTAGTGTTGAAAATTCAGA+TGG | - | chr6_1:36643353-36643372 | Msa0884020:intron | 30.0% |
| ! | CTAGTGTTGAAAATTCAGAT+GGG | - | chr6_1:36643354-36643373 | Msa0884020:intron | 30.0% |
| TAATCTCGATGTTCATGAAT+TGG | - | chr6_1:36643424-36643443 | Msa0884020:intron | 30.0% | |
| ATCTTGCATTTAGGCATAAT+AGG | - | chr6_1:36643796-36643815 | Msa0884020:CDS | 30.0% | |
| CCTGAAATATTAAGGTTAGA+GGG | + | chr6_1:36643840-36643859 | None:intergenic | 30.0% | |
| AATAAAGAGAACATTGATCC+CGG | - | chr6_1:36644137-36644156 | Msa0884020:CDS | 30.0% | |
| ATAGATCTTCAAGATGTTTG+TGG | - | chr6_1:36644281-36644300 | Msa0884020:intron | 30.0% | |
| GGTTGAACAACTTCAAAAAT+TGG | - | chr6_1:36644388-36644407 | Msa0884020:CDS | 30.0% | |
| AATCTTGGAAATTGTGGATT+TGG | - | chr6_1:36645010-36645029 | Msa0884020:intron | 30.0% | |
| CGAAGAATTTGGTAAAAAGT+TGG | - | chr6_1:36645180-36645199 | Msa0884020:intron | 30.0% | |
| AGAATTTGGTAAAAAGTTGG+CGG | - | chr6_1:36645183-36645202 | Msa0884020:intron | 30.0% | |
| TCTTCTACATGATTCTTTAG+GGG | - | chr6_1:36645318-36645337 | Msa0884020:CDS | 30.0% | |
| AAAATTATGCATTGTGGATC+TGG | - | chr6_1:36645385-36645404 | Msa0884020:intron | 30.0% | |
| TCAAGTGTTCAATATTCAGA+TGG | - | chr6_1:36645523-36645542 | Msa0884020:CDS | 30.0% | |
| ATCATCAGAAAAGACATGTA+TGG | - | chr6_1:36645673-36645692 | Msa0884020:intron | 30.0% | |
| TCAAAGCCTTTATTAGTTGA+AGG | + | chr6_1:36645746-36645765 | None:intergenic | 30.0% | |
| TTCAACTAATAAAGGCTTTG+AGG | - | chr6_1:36645745-36645764 | Msa0884020:intron | 30.0% | |
| !!! | TGTTTTGATCCAAATACACT+TGG | - | chr6_1:36645776-36645795 | Msa0884020:intron | 30.0% |
| TTTGCCTCAAACTAATGAAA+TGG | - | chr6_1:36646030-36646049 | Msa0884020:intron | 30.0% | |
| ! | AACTCCATTTCATTAGTTTG+AGG | + | chr6_1:36646037-36646056 | None:intergenic | 30.0% |
| ! | CTTAAACAACTTTTTGCTTC+AGG | - | chr6_1:36646070-36646089 | Msa0884020:intron | 30.0% |
| ATGCATTAACACTTGAATAG+AGG | + | chr6_1:36646132-36646151 | None:intergenic | 30.0% | |
| AGGCAATAAAATTTCAACCA+CGG | + | chr6_1:36646178-36646197 | None:intergenic | 30.0% | |
| AAGATTGTAAACGAAAACTG+AGG | - | chr6_1:36646284-36646303 | Msa0884020:intron | 30.0% | |
| ACGAAAACTGAGGAAAATAT+TGG | - | chr6_1:36646294-36646313 | Msa0884020:intron | 30.0% | |
| GAAGCAGTTTCTATAAATCA+AGG | + | chr6_1:36646563-36646582 | None:intergenic | 30.0% | |
| TGATTTATAGAAACTGCTTC+TGG | - | chr6_1:36646563-36646582 | Msa0884020:intron | 30.0% | |
| AGATGCTTATCATAAGAAGT+TGG | - | chr6_1:36646592-36646611 | Msa0884020:intron | 30.0% | |
| !! | CTAGGAATAAATTTGCTAAG+AGG | - | chr6_1:36646696-36646715 | Msa0884020:CDS | 30.0% |
| !! | ATGGTCATGCTTTTTACTAT+TGG | - | chr6_1:36646820-36646839 | Msa0884020:five_prime_UTR | 30.0% |
| CAGAGTTATTGCAAGAAACA+TGG | - | chr6_1:36640221-36640240 | Msa0884020:three_prime_UTR | 35.0% | |
| AAGTTTCACATATTCCTGGA+GGG | + | chr6_1:36640864-36640883 | None:intergenic | 35.0% | |
| TAAGTTTCACATATTCCTGG+AGG | + | chr6_1:36640865-36640884 | None:intergenic | 35.0% | |
| TTCTGATTGAAAATGTGTCC+CGG | - | chr6_1:36641144-36641163 | Msa0884020:CDS | 35.0% | |
| TTGACTTCACTTAACTGATC+TGG | + | chr6_1:36641679-36641698 | None:intergenic | 35.0% | |
| TGTTTATGTAGTTTGGCCAA+TGG | - | chr6_1:36641755-36641774 | Msa0884020:CDS | 35.0% | |
| ACTTTAGTTGCTCTATAGGT+AGG | + | chr6_1:36641783-36641802 | None:intergenic | 35.0% | |
| TGGAACTTTAGTTGCTCTAT+AGG | + | chr6_1:36641787-36641806 | None:intergenic | 35.0% | |
| ! | AGTTAAGTATCGCTCAATCA+AGG | + | chr6_1:36641897-36641916 | None:intergenic | 35.0% |
| ATAACAGGTAAACTGGTGTA+TGG | + | chr6_1:36642207-36642226 | None:intergenic | 35.0% | |
| AAGTTGAAATCTCCACATGA+AGG | - | chr6_1:36642399-36642418 | Msa0884020:CDS | 35.0% | |
| AAGTGAAGATGCAAATATGG+TGG | - | chr6_1:36642518-36642537 | Msa0884020:CDS | 35.0% | |
| TGATGAAGATACGAGTGAAA+CGG | - | chr6_1:36642578-36642597 | Msa0884020:CDS | 35.0% | |
| GGAAAAAGTTGGAGATGAAA+CGG | - | chr6_1:36642599-36642618 | Msa0884020:CDS | 35.0% | |
| ACCTGAATCAACATTGTGAT+CGG | + | chr6_1:36642682-36642701 | None:intergenic | 35.0% | |
| GATCCAATATCATATCCTTC+GGG | + | chr6_1:36642918-36642937 | None:intergenic | 35.0% | |
| GGATCCAATATCATATCCTT+CGG | + | chr6_1:36642919-36642938 | None:intergenic | 35.0% | |
| TGATATTGGATCCTTGTATG+TGG | - | chr6_1:36642926-36642945 | Msa0884020:CDS | 35.0% | |
| CGAAGATGAAAATATGGTTG+AGG | - | chr6_1:36643022-36643041 | Msa0884020:CDS | 35.0% | |
| GATGTTCATGTAGATTCTAG+TGG | - | chr6_1:36643074-36643093 | Msa0884020:CDS | 35.0% | |
| GATCAGATCAATATCCATCA+AGG | - | chr6_1:36643125-36643144 | Msa0884020:intron | 35.0% | |
| ! | GGATGATAATAATGGTGCTA+TGG | - | chr6_1:36643229-36643248 | Msa0884020:intron | 35.0% |
| TCTACTACATTAGGATCAGT+AGG | + | chr6_1:36643398-36643417 | None:intergenic | 35.0% | |
| TTACTCGTCTCTACTACATT+AGG | + | chr6_1:36643407-36643426 | None:intergenic | 35.0% | |
| CAGCAACAAAATGAAATGCA+GGG | + | chr6_1:36643615-36643634 | None:intergenic | 35.0% | |
| ACAGCAACAAAATGAAATGC+AGG | + | chr6_1:36643616-36643635 | None:intergenic | 35.0% | |
| ! | GCATTTCATTTTGTTGCTGT+TGG | - | chr6_1:36643616-36643635 | Msa0884020:CDS | 35.0% |
| CCCTCTAACCTTAATATTTC+AGG | - | chr6_1:36643837-36643856 | Msa0884020:CDS | 35.0% | |
| GCCTGAAATATTAAGGTTAG+AGG | + | chr6_1:36643841-36643860 | None:intergenic | 35.0% | |
| CTGCATTGCCTGAAATATTA+AGG | + | chr6_1:36643848-36643867 | None:intergenic | 35.0% | |
| ACCAATCAATTTCTCTGATG+CGG | + | chr6_1:36643919-36643938 | None:intergenic | 35.0% | |
| !! | CATACAGATTGGTGTTAATC+AGG | - | chr6_1:36644007-36644026 | Msa0884020:CDS | 35.0% |
| TCATGATCAAGAGAAAACGA+TGG | - | chr6_1:36644040-36644059 | Msa0884020:CDS | 35.0% | |
| CCTAGATTACTTAGCATAGT+GGG | + | chr6_1:36644074-36644093 | None:intergenic | 35.0% | |
| CCACTATGCTAAGTAATCTA+GGG | - | chr6_1:36644072-36644091 | Msa0884020:CDS | 35.0% | |
| TCAGTCTGTTTCAGAAGAAT+TGG | - | chr6_1:36644214-36644233 | Msa0884020:intron | 35.0% | |
| CAGTCTGTTTCAGAAGAATT+GGG | - | chr6_1:36644215-36644234 | Msa0884020:intron | 35.0% | |
| ATTGGGTAATGATTTGACAG+AGG | - | chr6_1:36644232-36644251 | Msa0884020:intron | 35.0% | |
| TTGGGTAATGATTTGACAGA+GGG | - | chr6_1:36644233-36644252 | Msa0884020:intron | 35.0% | |
| GATGAAGCTGTTAACAAATG+TGG | - | chr6_1:36644320-36644339 | Msa0884020:CDS | 35.0% | |
| ! | ATTCCTTTGGAGAAACATGA+GGG | + | chr6_1:36644355-36644374 | None:intergenic | 35.0% |
| !! | ACTTCACGTAATGGATCAAT+TGG | + | chr6_1:36644569-36644588 | None:intergenic | 35.0% |
| TTAGTCTCAACTTCACGTAA+TGG | + | chr6_1:36644578-36644597 | None:intergenic | 35.0% | |
| !! | TGATCTTGCTGTTCACAAAA+TGG | - | chr6_1:36644598-36644617 | Msa0884020:CDS | 35.0% |
| CCTAAAAATGCAGATACAAG+CGG | - | chr6_1:36644719-36644738 | Msa0884020:intron | 35.0% | |
| !! | GTTGAAGATGTTTCTGAAAC+TGG | - | chr6_1:36644821-36644840 | Msa0884020:intron | 35.0% |
| AGCAATGAAGCTATAAACCA+AGG | - | chr6_1:36644851-36644870 | Msa0884020:intron | 35.0% | |
| TGTTTACATTCGATCCATGA+GGG | + | chr6_1:36644889-36644908 | None:intergenic | 35.0% | |
| TTGTTTACATTCGATCCATG+AGG | + | chr6_1:36644890-36644909 | None:intergenic | 35.0% | |
| ! | TGACCTTTTACATGTTTCTC+CGG | - | chr6_1:36644913-36644932 | Msa0884020:intron | 35.0% |
| GACTTCAATCTTGGAAATTG+TGG | - | chr6_1:36645004-36645023 | Msa0884020:intron | 35.0% | |
| ! | AAGATTTTCCATAGACACGT+TGG | + | chr6_1:36645095-36645114 | None:intergenic | 35.0% |
| ! | AGATGATGATGATCTTGTAC+TGG | - | chr6_1:36645150-36645169 | Msa0884020:intron | 35.0% |
| TTTCACAGTCATCTTCAAGA+AGG | + | chr6_1:36645222-36645241 | None:intergenic | 35.0% | |
| !! | GATGAAGCTCTAAATTCAAG+TGG | - | chr6_1:36645256-36645275 | Msa0884020:intron | 35.0% |
| ! | CATTTATGATTGACTCTGGA+GGG | + | chr6_1:36645291-36645310 | None:intergenic | 35.0% |
| ! | TCATTTATGATTGACTCTGG+AGG | + | chr6_1:36645292-36645311 | None:intergenic | 35.0% |
| TGAAGGTTCAAAGTCATTAG+CGG | + | chr6_1:36645729-36645748 | None:intergenic | 35.0% | |
| ACAACATCTCCAAGTGTATT+TGG | + | chr6_1:36645788-36645807 | None:intergenic | 35.0% | |
| TACACTTGGAGATGTTGTTA+TGG | - | chr6_1:36645790-36645809 | Msa0884020:intron | 35.0% | |
| TCTGATGTTCATGATGGTAT+TGG | - | chr6_1:36645899-36645918 | Msa0884020:intron | 35.0% | |
| ! | TCATTAGTTTGAGGCAAAGT+TGG | + | chr6_1:36646028-36646047 | None:intergenic | 35.0% |
| GATAATGAAAACCAGACACA+TGG | - | chr6_1:36646347-36646366 | Msa0884020:intron | 35.0% | |
| AAAAGCGACTGTTTCGATAT+AGG | - | chr6_1:36646425-36646444 | Msa0884020:intron | 35.0% | |
| TATGTTTGCAGTTCAGATTG+CGG | - | chr6_1:36646471-36646490 | Msa0884020:intron | 35.0% | |
| TTTGACAAGAAGGAAGAAGT+TGG | - | chr6_1:36646662-36646681 | Msa0884020:intron | 35.0% | |
| TTGACAAGAAGGAAGAAGTT+GGG | - | chr6_1:36646663-36646682 | Msa0884020:intron | 35.0% | |
| TTCTGCTTAAGATCTTGAAG+AGG | + | chr6_1:36646725-36646744 | None:intergenic | 35.0% | |
| !! | TTATGATGACACTTGGTGTT+AGG | - | chr6_1:36646854-36646873 | Msa0884020:five_prime_UTR | 35.0% |
| ACAAATTCGTGGGAACAAGA+AGG | + | chr6_1:36640110-36640129 | None:intergenic | 40.0% | |
| TCAACGTTCTTCAAATTCGC+TGG | + | chr6_1:36640251-36640270 | None:intergenic | 40.0% | |
| ! | TAATGGCATGTGTTCTGAGT+TGG | - | chr6_1:36640989-36641008 | Msa0884020:CDS | 40.0% |
| GTAATCACAAGTGTCAGTGT+CGG | + | chr6_1:36641173-36641192 | None:intergenic | 40.0% | |
| !! | TGGTGCTGATGATGTTCTTA+TGG | - | chr6_1:36641452-36641471 | Msa0884020:CDS | 40.0% |
| GATGTTCTTATGGAAGCTTC+AGG | - | chr6_1:36641462-36641481 | Msa0884020:CDS | 40.0% | |
| GAGTGATGAACATAAACTGG+AGG | - | chr6_1:36641648-36641667 | Msa0884020:CDS | 40.0% | |
| TGATGAACATAAACTGGAGG+AGG | - | chr6_1:36641651-36641670 | Msa0884020:CDS | 40.0% | |
| TGAAGTCAAGTCTGATCACA+AGG | - | chr6_1:36641690-36641709 | Msa0884020:CDS | 40.0% | |
| ! | TCTGATCACAAGGTTGATTC+AGG | - | chr6_1:36641700-36641719 | Msa0884020:CDS | 40.0% |
| AGTATCGCTCAATCAAGGTA+CGG | + | chr6_1:36641892-36641911 | None:intergenic | 40.0% | |
| GAAAGCGATAACAGGTAAAC+TGG | + | chr6_1:36642214-36642233 | None:intergenic | 40.0% | |
| CAGCAGACCCTAAAATGTAA+AGG | + | chr6_1:36642308-36642327 | None:intergenic | 40.0% | |
| !!! | TACATTTTAGGGTCTGCTGT+TGG | - | chr6_1:36642309-36642328 | Msa0884020:intron | 40.0% |
| !!! | ACATTTTAGGGTCTGCTGTT+GGG | - | chr6_1:36642310-36642329 | Msa0884020:intron | 40.0% |
| ! | ACTTTTCTCGTCTTTAGCGA+AGG | + | chr6_1:36642366-36642385 | None:intergenic | 40.0% |
| CATTCTCTCCTGTACGTTAA+CGG | + | chr6_1:36642439-36642458 | None:intergenic | 40.0% | |
| ACGAGTGAAACGGAAAAAGT+TGG | - | chr6_1:36642588-36642607 | Msa0884020:CDS | 40.0% | |
| TGGAGATGAAACGGAAAAAC+TGG | - | chr6_1:36642608-36642627 | Msa0884020:CDS | 40.0% | |
| TGAAACGGAAAAACTGGATG+CGG | - | chr6_1:36642614-36642633 | Msa0884020:CDS | 40.0% | |
| !! | TCCGATCACAATGTTGATTC+AGG | - | chr6_1:36642678-36642697 | Msa0884020:CDS | 40.0% |
| TCTTCACGAAAGATGAGTCA+AGG | - | chr6_1:36642864-36642883 | Msa0884020:CDS | 40.0% | |
| TATTGGATCCTTGTATGTGG+AGG | - | chr6_1:36642929-36642948 | Msa0884020:CDS | 40.0% | |
| CAATGTTTCCTCCACATACA+AGG | + | chr6_1:36642940-36642959 | None:intergenic | 40.0% | |
| TATCCATCAAGGATCAGTCA+TGG | - | chr6_1:36643136-36643155 | Msa0884020:intron | 40.0% | |
| TGTTCAAGACACTCTAGATG+AGG | - | chr6_1:36643322-36643341 | Msa0884020:intron | 40.0% | |
| GTTCATGAATTGGATGTCAC+AGG | - | chr6_1:36643434-36643453 | Msa0884020:intron | 40.0% | |
| AATCAATTTCTCTGATGCGG+GGG | + | chr6_1:36643916-36643935 | None:intergenic | 40.0% | |
| CAATCAATTTCTCTGATGCG+GGG | + | chr6_1:36643917-36643936 | None:intergenic | 40.0% | |
| CCAATCAATTTCTCTGATGC+GGG | + | chr6_1:36643918-36643937 | None:intergenic | 40.0% | |
| GTGGAGGAAAACATACAGAT+TGG | - | chr6_1:36643996-36644015 | Msa0884020:CDS | 40.0% | |
| CCCACTATGCTAAGTAATCT+AGG | - | chr6_1:36644071-36644090 | Msa0884020:CDS | 40.0% | |
| CCCTAGATTACTTAGCATAG+TGG | + | chr6_1:36644075-36644094 | None:intergenic | 40.0% | |
| CTTTCTTCTGAATCACTTGC+TGG | + | chr6_1:36644101-36644120 | None:intergenic | 40.0% | |
| CTTCAAGATGTTTGTGGAAG+CGG | - | chr6_1:36644287-36644306 | Msa0884020:intron | 40.0% | |
| ! | GATTCCTTTGGAGAAACATG+AGG | + | chr6_1:36644356-36644375 | None:intergenic | 40.0% |
| ! | CTTGTCAACATTTTTCGCAC+CGG | + | chr6_1:36644468-36644487 | None:intergenic | 40.0% |
| !! | TCACGTAATGGATCAATTGG+CGG | + | chr6_1:36644566-36644585 | None:intergenic | 40.0% |
| ! | CCGCTTGTATCTGCATTTTT+AGG | + | chr6_1:36644722-36644741 | None:intergenic | 40.0% |
| !! | AGCACTTGCTACTGATTTGA+TGG | - | chr6_1:36644760-36644779 | Msa0884020:intron | 40.0% |
| !! | ACTTGCTACTGATTTGATGG+AGG | - | chr6_1:36644763-36644782 | Msa0884020:intron | 40.0% |
| TGATTTGATGGAGGAAGAAG+TGG | - | chr6_1:36644772-36644791 | Msa0884020:intron | 40.0% | |
| !! | GATGTTTCTGAAACTGGCAA+CGG | - | chr6_1:36644827-36644846 | Msa0884020:intron | 40.0% |
| ! | GGTTTTTGCATCAGTATCCT+CGG | + | chr6_1:36645074-36645093 | None:intergenic | 40.0% |
| TGCAAAAACCAACGTGTCTA+TGG | - | chr6_1:36645084-36645103 | Msa0884020:intron | 40.0% | |
| GGATCTGGAAAAAGTGAATC+TGG | - | chr6_1:36645400-36645419 | Msa0884020:intron | 40.0% | |
| GGATTCATCAGGGAAACAAA+AGG | + | chr6_1:36645434-36645453 | None:intergenic | 40.0% | |
| ! | TAGCAACAACGGATTCATCA+GGG | + | chr6_1:36645444-36645463 | None:intergenic | 40.0% |
| ! | TTAGCAACAACGGATTCATC+AGG | + | chr6_1:36645445-36645464 | None:intergenic | 40.0% |
| GCATCTGCATGTGAAGATAA+AGG | + | chr6_1:36645632-36645651 | None:intergenic | 40.0% | |
| GCAAATTGACATGACAGAGA+AGG | - | chr6_1:36645838-36645857 | Msa0884020:intron | 40.0% | |
| ACAGAGAAGGTAAACAGTCA+GGG | - | chr6_1:36645851-36645870 | Msa0884020:intron | 40.0% | |
| GAGAACTCTGATGTTCATGA+TGG | - | chr6_1:36645893-36645912 | Msa0884020:intron | 40.0% | |
| ! | GATGTTCATGATGGTATTGG+TGG | - | chr6_1:36645902-36645921 | Msa0884020:intron | 40.0% |
| ! | CATCACTCCTTTTCCTTTTC+CGG | + | chr6_1:36645970-36645989 | None:intergenic | 40.0% |
| TTCTTCATATCTGGTAGACG+AGG | + | chr6_1:36646198-36646217 | None:intergenic | 40.0% | |
| GCATAAGCAACTGTTTCAGT+AGG | - | chr6_1:36646515-36646534 | Msa0884020:intron | 40.0% | |
| ATCATTGGTGTAGCCTTTGA+TGG | + | chr6_1:36646623-36646642 | None:intergenic | 40.0% | |
| CCAACACTACATGTACAGAA+AGG | + | chr6_1:36646753-36646772 | None:intergenic | 40.0% | |
| CCTTTCTGTACATGTAGTGT+TGG | - | chr6_1:36646750-36646769 | Msa0884020:CDS | 40.0% | |
| ACACAAGACAGACACAGACA+CGG | + | chr6_1:36641259-36641278 | None:intergenic | 45.0% | |
| ATCACGTCATGTCAGACACT+GGG | + | chr6_1:36641282-36641301 | None:intergenic | 45.0% | |
| AATCACGTCATGTCAGACAC+TGG | + | chr6_1:36641283-36641302 | None:intergenic | 45.0% | |
| !! | CCTTCTTTGGCTTGTAACTG+GGG | + | chr6_1:36641381-36641400 | None:intergenic | 45.0% |
| !! | GCCTTCTTTGGCTTGTAACT+GGG | + | chr6_1:36641382-36641401 | None:intergenic | 45.0% |
| ATAGACTTGGACTCAGACAG+TGG | - | chr6_1:36641432-36641451 | Msa0884020:intron | 45.0% | |
| TCAATCAAGGTACGGCTAAG+GGG | + | chr6_1:36641884-36641903 | None:intergenic | 45.0% | |
| CTCAATCAAGGTACGGCTAA+GGG | + | chr6_1:36641885-36641904 | None:intergenic | 45.0% | |
| CCAATGTCATCTCCTTCATG+TGG | + | chr6_1:36642414-36642433 | None:intergenic | 45.0% | |
| CCACATGAAGGAGATGACAT+TGG | - | chr6_1:36642411-36642430 | Msa0884020:CDS | 45.0% | |
| CATTGGATCCGTTAACGTAC+AGG | - | chr6_1:36642428-36642447 | Msa0884020:CDS | 45.0% | |
| !! | GCATCTTCACTTGATGATGC+AGG | + | chr6_1:36642510-36642529 | None:intergenic | 45.0% |
| TCGGACTTGACTTCACTTAG+TGG | + | chr6_1:36642663-36642682 | None:intergenic | 45.0% | |
| ! | GGCATCAGCATTTTCATCAG+CGG | + | chr6_1:36642826-36642845 | None:intergenic | 45.0% |
| !! | AAGACGCTGACTTCAGTTCA+CGG | + | chr6_1:36642848-36642867 | None:intergenic | 45.0% |
| AAGTTGAAATCACCACCCGA+AGG | - | chr6_1:36642900-36642919 | Msa0884020:CDS | 45.0% | |
| CCAATATCATATCCTTCGGG+TGG | + | chr6_1:36642915-36642934 | None:intergenic | 45.0% | |
| CCACCCGAAGGATATGATAT+TGG | - | chr6_1:36642912-36642931 | Msa0884020:CDS | 45.0% | |
| TCTCCATGACTGATCCTTGA+TGG | + | chr6_1:36643142-36643161 | None:intergenic | 45.0% | |
| GTTTCTTCCAAGGAATCCAG+TGG | - | chr6_1:36643179-36643198 | Msa0884020:intron | 45.0% | |
| TCAGTAGGCAGAACTTGAAC+TGG | + | chr6_1:36643383-36643402 | None:intergenic | 45.0% | |
| TCAGGCAATGCAGATACAAG+TGG | - | chr6_1:36643855-36643874 | Msa0884020:CDS | 45.0% | |
| CCCGCATCAGAGAAATTGAT+TGG | - | chr6_1:36643915-36643934 | Msa0884020:CDS | 45.0% | |
| TTCTGCATTCCAACCTTCAC+CGG | + | chr6_1:36644159-36644178 | None:intergenic | 45.0% | |
| TCGTTCATGTCAACTGCACT+AGG | + | chr6_1:36644182-36644201 | None:intergenic | 45.0% | |
| ACAGAGGGACAAGTTGCAAA+CGG | - | chr6_1:36644248-36644267 | Msa0884020:intron | 45.0% | |
| GATGTTTGTGGAAGCGGAAA+CGG | - | chr6_1:36644293-36644312 | Msa0884020:CDS | 45.0% | |
| TAGCCCTCATGTTTCTCCAA+AGG | - | chr6_1:36644349-36644368 | Msa0884020:CDS | 45.0% | |
| GTTTCTCCAAAGGAATCGAG+TGG | - | chr6_1:36644359-36644378 | Msa0884020:CDS | 45.0% | |
| AAACAGCCACTCGATTCCTT+TGG | + | chr6_1:36644368-36644387 | None:intergenic | 45.0% | |
| AAAGGAATCGAGTGGCTGTT+TGG | - | chr6_1:36644367-36644386 | Msa0884020:CDS | 45.0% | |
| GTTCACAAAATGGCTGCCAT+AGG | - | chr6_1:36644608-36644627 | Msa0884020:CDS | 45.0% | |
| TGCAGATACAAGCGGTGTAA+AGG | - | chr6_1:36644727-36644746 | Msa0884020:intron | 45.0% | |
| TTTGATGGAGGAAGAAGTGG+CGG | - | chr6_1:36644775-36644794 | Msa0884020:intron | 45.0% | |
| CCACCGGAGAAACATGTAAA+AGG | + | chr6_1:36644919-36644938 | None:intergenic | 45.0% | |
| ! | CCTTTTACATGTTTCTCCGG+TGG | - | chr6_1:36644916-36644935 | Msa0884020:intron | 45.0% |
| AAAGGTGAACTCGATTCCAC+CGG | + | chr6_1:36644935-36644954 | None:intergenic | 45.0% | |
| GAATCGAGTTCACCTTTGGT+TGG | - | chr6_1:36644938-36644957 | Msa0884020:intron | 45.0% | |
| TGAACTTGTCCTCCAACCAA+AGG | + | chr6_1:36644953-36644972 | None:intergenic | 45.0% | |
| GACGATAATGTTGTGCACTC+TGG | - | chr6_1:36644980-36644999 | Msa0884020:intron | 45.0% | |
| ! | CACTCTGGAGACTTCAATCT+TGG | - | chr6_1:36644995-36645014 | Msa0884020:intron | 45.0% |
| TGATAAATCCATTGCTGCCG+AGG | - | chr6_1:36645054-36645073 | Msa0884020:intron | 45.0% | |
| ! | CTTGGTGCATGACTCTCATA+TGG | + | chr6_1:36645118-36645137 | None:intergenic | 45.0% |
| ATGTATGGTTGCAGATCCTG+AGG | - | chr6_1:36645688-36645707 | Msa0884020:intron | 45.0% | |
| GAAAATCCAATGCACTCCTC+AGG | + | chr6_1:36645707-36645726 | None:intergenic | 45.0% | |
| GACAGAGAAGGTAAACAGTC+AGG | - | chr6_1:36645850-36645869 | Msa0884020:intron | 45.0% | |
| AAGGTAAACAGTCAGGGAGA+AGG | - | chr6_1:36645857-36645876 | Msa0884020:intron | 45.0% | |
| !! | CATGATGGTATTGGTGGAGT+TGG | - | chr6_1:36645908-36645927 | Msa0884020:intron | 45.0% |
| ATCAACCTGATACAGTGAGC+CGG | - | chr6_1:36645948-36645967 | Msa0884020:intron | 45.0% | |
| GAGTGATGCAAATTCAGACG+AGG | - | chr6_1:36645982-36646001 | Msa0884020:intron | 45.0% | |
| !! | TATGTTTTAAGTCGCTGCCG+TGG | - | chr6_1:36646158-36646177 | Msa0884020:intron | 45.0% |
| GAAGTTGGACTCACCATCAA+AGG | - | chr6_1:36646607-36646626 | Msa0884020:intron | 45.0% | |
| AAGTTGGGTCAGTGATGTCT+AGG | - | chr6_1:36646678-36646697 | Msa0884020:intron | 45.0% | |
| AACAGGAACTTACTCCCTCC+AGG | - | chr6_1:36640847-36640866 | Msa0884020:intron | 50.0% | |
| CACAAGACAGACACAGACAC+GGG | + | chr6_1:36641258-36641277 | None:intergenic | 50.0% | |
| !! | TCTTTGGCTTGTAACTGGGG+TGG | + | chr6_1:36641378-36641397 | None:intergenic | 50.0% |
| CCCCAGTTACAAGCCAAAGA+AGG | - | chr6_1:36641378-36641397 | Msa0884020:intron | 50.0% | |
| !! | CGCCTTCTTTGGCTTGTAAC+TGG | + | chr6_1:36641383-36641402 | None:intergenic | 50.0% |
| GTCTTTAACGGCGCCTTCTT+TGG | + | chr6_1:36641394-36641413 | None:intergenic | 50.0% | |
| GCTCTATAGGTAGGCACCAT+TGG | + | chr6_1:36641774-36641793 | None:intergenic | 50.0% | |
| GCTCAATCAAGGTACGGCTA+AGG | + | chr6_1:36641886-36641905 | None:intergenic | 50.0% | |
| TGGGAATGCAGATGCTTGTG+AGG | - | chr6_1:36642329-36642348 | Msa0884020:intron | 50.0% | |
| !! | AGACGCTGACTTCAGTTCAC+GGG | + | chr6_1:36642847-36642866 | None:intergenic | 50.0% |
| TTGTTCAACCAAACGGCCAC+TGG | + | chr6_1:36643198-36643217 | None:intergenic | 50.0% | |
| CCACACATGTCGATGCATCA+AGG | + | chr6_1:36643274-36643293 | None:intergenic | 50.0% | |
| ! | CCTTGATGCATCGACATGTG+TGG | - | chr6_1:36643271-36643290 | Msa0884020:intron | 50.0% |
| TACCGATGAGAACGCTGATG+TGG | - | chr6_1:36643298-36643317 | Msa0884020:intron | 50.0% | |
| AGCCACATCAGCGTTCTCAT+CGG | + | chr6_1:36643303-36643322 | None:intergenic | 50.0% | |
| GAGAACATTGATCCCGGTGA+AGG | - | chr6_1:36644143-36644162 | Msa0884020:CDS | 50.0% | |
| ACATTGATCCCGGTGAAGGT+TGG | - | chr6_1:36644147-36644166 | Msa0884020:CDS | 50.0% | |
| TCTGCATTCCAACCTTCACC+GGG | + | chr6_1:36644158-36644177 | None:intergenic | 50.0% | |
| GTCTGCCTTGATGCATCAAC+CGG | - | chr6_1:36644446-36644465 | Msa0884020:CDS | 50.0% | |
| GAGGGCTATTGATGCTACCT+TGG | + | chr6_1:36644871-36644890 | None:intergenic | 50.0% | |
| GGTAGCATCAATAGCCCTCA+TGG | - | chr6_1:36644872-36644891 | Msa0884020:intron | 50.0% | |
| GGTGGAATCGAGTTCACCTT+TGG | - | chr6_1:36644934-36644953 | Msa0884020:intron | 50.0% | |
| TCGAGTTCACCTTTGGTTGG+AGG | - | chr6_1:36644941-36644960 | Msa0884020:intron | 50.0% | |
| ATCAGTATCCTCGGCAGCAA+TGG | + | chr6_1:36645065-36645084 | None:intergenic | 50.0% | |
| CTGGCTGCTTCCGAAGAATT+TGG | - | chr6_1:36645169-36645188 | Msa0884020:intron | 50.0% | |
| ! | CTTTTCCGGCTCACTGTATC+AGG | + | chr6_1:36645956-36645975 | None:intergenic | 50.0% |
| CTGATACAGTGAGCCGGAAA+AGG | - | chr6_1:36645954-36645973 | Msa0884020:intron | 50.0% | |
| CAGTGAGCCGGAAAAGGAAA+AGG | - | chr6_1:36645960-36645979 | Msa0884020:intron | 50.0% | |
| GTCGCTTACTTCCATGTGTC+TGG | + | chr6_1:36646361-36646380 | None:intergenic | 50.0% | |
| ! | AAGTGTCAGTGTCGGACACC+GGG | + | chr6_1:36641165-36641184 | None:intergenic | 55.0% |
| ! | CAAGTGTCAGTGTCGGACAC+CGG | + | chr6_1:36641166-36641185 | None:intergenic | 55.0% |
| CAAACGGCCACTGGATTCCT+TGG | + | chr6_1:36643189-36643208 | None:intergenic | 55.0% | |
| CAAGGAATCCAGTGGCCGTT+TGG | - | chr6_1:36643187-36643206 | Msa0884020:intron | 55.0% | |
| GCATCAAGGCACATTGCAGC+AGG | + | chr6_1:36643260-36643279 | None:intergenic | 55.0% | |
| !! | TCGCACCGGTTGATGCATCA+AGG | + | chr6_1:36644454-36644473 | None:intergenic | 55.0% |
| ! | GCAGATCCTGAGGAGTGCAT+TGG | - | chr6_1:36645698-36645717 | Msa0884020:intron | 55.0% |
| GCTTGTAACTGGGGTGGTGC+AGG | + | chr6_1:36641372-36641391 | None:intergenic | 60.0% | |
| !! | GGAGGAAGAAGTGGCGGACG+TGG | - | chr6_1:36644781-36644800 | Msa0884020:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 36639995 | 36646997 | 36639995 | ID=Msa0884020;Name=Msa0884020 |
| chr6_1 | mRNA | 36639995 | 36646997 | 36639995 | ID=Msa0884020-mRNA-1;Parent=Msa0884020;Name=Msa0884020-mRNA-1;_AED=0.04;_eAED=0.04;_QI=193|0.87|0.88|1|1|1|9|249|1193 |
| chr6_1 | exon | 36639995 | 36640419 | 36639995 | ID=Msa0884020-mRNA-1:exon:8664;Parent=Msa0884020-mRNA-1 |
| chr6_1 | exon | 36640901 | 36641344 | 36640901 | ID=Msa0884020-mRNA-1:exon:8663;Parent=Msa0884020-mRNA-1 |
| chr6_1 | exon | 36641448 | 36642260 | 36641448 | ID=Msa0884020-mRNA-1:exon:8662;Parent=Msa0884020-mRNA-1 |
| chr6_1 | exon | 36642363 | 36643133 | 36642363 | ID=Msa0884020-mRNA-1:exon:8661;Parent=Msa0884020-mRNA-1 |
| chr6_1 | exon | 36643537 | 36644172 | 36643537 | ID=Msa0884020-mRNA-1:exon:8660;Parent=Msa0884020-mRNA-1 |
| chr6_1 | exon | 36644293 | 36644673 | 36644293 | ID=Msa0884020-mRNA-1:exon:8659;Parent=Msa0884020-mRNA-1 |
| chr6_1 | exon | 36645271 | 36645384 | 36645271 | ID=Msa0884020-mRNA-1:exon:8658;Parent=Msa0884020-mRNA-1 |
| chr6_1 | exon | 36645509 | 36645641 | 36645509 | ID=Msa0884020-mRNA-1:exon:8657;Parent=Msa0884020-mRNA-1 |
| chr6_1 | exon | 36646691 | 36646997 | 36646691 | ID=Msa0884020-mRNA-1:exon:8656;Parent=Msa0884020-mRNA-1 |
| chr6_1 | five_prime_UTR | 36646805 | 36646997 | 36646805 | ID=Msa0884020-mRNA-1:five_prime_utr;Parent=Msa0884020-mRNA-1 |
| chr6_1 | CDS | 36646691 | 36646804 | 36646691 | ID=Msa0884020-mRNA-1:cds;Parent=Msa0884020-mRNA-1 |
| chr6_1 | CDS | 36645509 | 36645641 | 36645509 | ID=Msa0884020-mRNA-1:cds;Parent=Msa0884020-mRNA-1 |
| chr6_1 | CDS | 36645271 | 36645384 | 36645271 | ID=Msa0884020-mRNA-1:cds;Parent=Msa0884020-mRNA-1 |
| chr6_1 | CDS | 36644293 | 36644673 | 36644293 | ID=Msa0884020-mRNA-1:cds;Parent=Msa0884020-mRNA-1 |
| chr6_1 | CDS | 36643537 | 36644172 | 36643537 | ID=Msa0884020-mRNA-1:cds;Parent=Msa0884020-mRNA-1 |
| chr6_1 | CDS | 36642363 | 36643133 | 36642363 | ID=Msa0884020-mRNA-1:cds;Parent=Msa0884020-mRNA-1 |
| chr6_1 | CDS | 36641448 | 36642260 | 36641448 | ID=Msa0884020-mRNA-1:cds;Parent=Msa0884020-mRNA-1 |
| chr6_1 | CDS | 36640901 | 36641344 | 36640901 | ID=Msa0884020-mRNA-1:cds;Parent=Msa0884020-mRNA-1 |
| chr6_1 | CDS | 36640244 | 36640419 | 36640244 | ID=Msa0884020-mRNA-1:cds;Parent=Msa0884020-mRNA-1 |
| chr6_1 | three_prime_UTR | 36639995 | 36640243 | 36639995 | ID=Msa0884020-mRNA-1:three_prime_utr;Parent=Msa0884020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
