Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0885380 | XP_027188042.1 | 47.541 | 183 | 48 | 4 | 4 | 143 | 11 | 188 | 4.93e-39 | 142 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0885380 | A0A3Q7Y8M1 | 47.541 | 183 | 48 | 4 | 4 | 143 | 11 | 188 | 2.35e-39 | 142 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0885380 | Msa1340260 | 0.809406 | 1.922664e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0885380 | MtrunA17_Chr2g0313001 | 84.337 | 83 | 9 | 1 | 92 | 174 | 53 | 131 | 1.96e-41 | 135 |
Msa0885380 | MtrunA17_Chr8g0345501 | 43.429 | 175 | 43 | 4 | 4 | 138 | 556 | 714 | 5.32e-33 | 123 |
Msa0885380 | MtrunA17_Chr8g0345511 | 53.704 | 54 | 21 | 1 | 39 | 92 | 57 | 106 | 5.98e-11 | 57.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 17 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTGTCATTATGAAACATT+TGG | 0.297182 | 6_1:-41421847 | Msa0885380:CDS |
TGCTCATTTGATTCACTGTT+GGG | 0.303948 | 6_1:+41421792 | None:intergenic |
CTTCCGTACACATCGCAAAA+AGG | 0.331253 | 6_1:-41422430 | Msa0885380:CDS |
ATGAAACATTTGGGATTTGT+TGG | 0.353696 | 6_1:-41421837 | Msa0885380:CDS |
CACTGTTGGGGTTTGAAACA+TGG | 0.393708 | 6_1:+41421805 | None:intergenic |
GCTGTCATTATGAAACATTT+GGG | 0.422376 | 6_1:-41421846 | Msa0885380:CDS |
TTGATTTGAAGATGGAATCA+AGG | 0.453518 | 6_1:+41422028 | None:intergenic |
ATGCTCATTTGATTCACTGT+TGG | 0.464568 | 6_1:+41421791 | None:intergenic |
AAAGGGAGGATATTTGGCCT+TGG | 0.468123 | 6_1:-41422065 | Msa0885380:CDS |
TTTGTTTGTTGATTTGAAGA+TGG | 0.472897 | 6_1:+41422020 | None:intergenic |
AACAAGAAAAGTTGCAGATG+AGG | 0.532029 | 6_1:-41421920 | Msa0885380:CDS |
GCTCATTTGATTCACTGTTG+GGG | 0.539156 | 6_1:+41421793 | None:intergenic |
ACTGTTGGGGTTTGAAACAT+GGG | 0.581536 | 6_1:+41421806 | None:intergenic |
AAACACACATGCTAATTCAG+AGG | 0.635059 | 6_1:-41422000 | Msa0885380:CDS |
CACACATGCTAATTCAGAGG+AGG | 0.683200 | 6_1:-41421997 | Msa0885380:CDS |
AAGTAAAACTCAGTCAGCGA+CGG | 0.698708 | 6_1:+41422450 | None:intergenic |
TTCTGTTGAAGATGTCGATG+AGG | 0.709983 | 6_1:-41421745 | Msa0885380:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTCTGTAAATTATAAAC+AGG | + | chr6_1:41423562-41423581 | None:intergenic | 15.0% |
!! | TGTTTATAATTTACAGAAAA+AGG | - | chr6_1:41423561-41423580 | Msa0885380:intron | 15.0% |
!!! | CTATTTTGTTGACATTTAAT+GGG | + | chr6_1:41421726-41421745 | None:intergenic | 20.0% |
!!! | ACTATTTTGTTGACATTTAA+TGG | + | chr6_1:41421727-41421746 | None:intergenic | 20.0% |
!!! | AACAAAATAGTATTTTGTGT+TGG | - | chr6_1:41421736-41421755 | Msa0885380:CDS | 20.0% |
!!! | ACAAAATAGTATTTTGTGTT+GGG | - | chr6_1:41421737-41421756 | Msa0885380:CDS | 20.0% |
!!! | AAATGGACTTAAAGATAAAT+GGG | + | chr6_1:41421822-41421841 | None:intergenic | 20.0% |
!!! | TAAATGGACTTAAAGATAAA+TGG | + | chr6_1:41421823-41421842 | None:intergenic | 20.0% |
!! | AATTGAATATAGAATCCTTA+GGG | + | chr6_1:41422104-41422123 | None:intergenic | 20.0% |
!! | ACTTATTTGAACTTATTTAG+TGG | - | chr6_1:41422270-41422289 | Msa0885380:intron | 20.0% |
!! | TTATCAACAAAAAAATTTCG+AGG | + | chr6_1:41422744-41422763 | None:intergenic | 20.0% |
!! | ACTTATTTGAACTTATTTAC+TGG | - | chr6_1:41422857-41422876 | Msa0885380:intron | 20.0% |
!!! | TTTTAGAGAACTTATGAAAA+CGG | - | chr6_1:41422971-41422990 | Msa0885380:intron | 20.0% |
!!! | AAATGAACATTTTTAAAGCA+AGG | + | chr6_1:41423109-41423128 | None:intergenic | 20.0% |
!! | ATGAAAAGTAATCACAAAAA+AGG | + | chr6_1:41423459-41423478 | None:intergenic | 20.0% |
!! | AATTTACAGAAAAAGGAAAA+AGG | - | chr6_1:41423568-41423587 | Msa0885380:intron | 20.0% |
!! | CAAATTTGAACAAAAAAAGA+TGG | - | chr6_1:41423854-41423873 | Msa0885380:intron | 20.0% |
! | GTTATGTCTGAAAGATTAAA+TGG | + | chr6_1:41421839-41421858 | None:intergenic | 25.0% |
! | CAATTGAATATAGAATCCTT+AGG | + | chr6_1:41422105-41422124 | None:intergenic | 25.0% |
! | GTCATTAATCATAAGTTGTT+TGG | - | chr6_1:41422393-41422412 | Msa0885380:CDS | 25.0% |
! | AAACCATGTAAAGTTTCATT+AGG | - | chr6_1:41422426-41422445 | Msa0885380:CDS | 25.0% |
!! | TCTAAAGGCTCTTAAATTTT+GGG | + | chr6_1:41422457-41422476 | None:intergenic | 25.0% |
!!! | TTCTAAAGGCTCTTAAATTT+TGG | + | chr6_1:41422458-41422477 | None:intergenic | 25.0% |
!!! | AATTGATTTGAAGCTGTATA+AGG | - | chr6_1:41422702-41422721 | Msa0885380:intron | 25.0% |
!! | TAGTGTTTTATCTATGAGTT+TGG | - | chr6_1:41422802-41422821 | Msa0885380:intron | 25.0% |
!! | ACTTATTTGACTTTATGTAG+TGG | - | chr6_1:41422888-41422907 | Msa0885380:intron | 25.0% |
!! | TTTATGTAGTGGAATAAGTT+TGG | - | chr6_1:41422303-41422322 | Msa0885380:intron | 25.0% |
!!! | GACTTATTTTACTTATCTCA+AGG | - | chr6_1:41422935-41422954 | Msa0885380:intron | 25.0% |
! | GTCATTAATCATAAGTTGTT+TGG | - | chr6_1:41422393-41422412 | Msa0885380:CDS | 25.0% |
! | TACATTTCAATTTGATTGCA+AGG | - | chr6_1:41423177-41423196 | Msa0885380:intron | 25.0% |
! | TGAAAAAACTTAGTTGTTAC+AGG | + | chr6_1:41423423-41423442 | None:intergenic | 25.0% |
!! | ATTTGAATTTGAAGCATACA+AGG | + | chr6_1:41423485-41423504 | None:intergenic | 25.0% |
! | TGAACAAATTTATGCATATG+TGG | - | chr6_1:41423756-41423775 | Msa0885380:intron | 25.0% |
!!! | GACTTCTTTTATTTTCGTTT+AGG | - | chr6_1:41423830-41423849 | Msa0885380:intron | 25.0% |
! | TATGGGTAGATTAGAAAAAA+AGG | - | chr6_1:41423965-41423984 | Msa0885380:intron | 25.0% |
! | ATGGGTAGATTAGAAAAAAA+GGG | - | chr6_1:41423966-41423985 | Msa0885380:intron | 25.0% |
!!! | TTTGTTTGTTGATTTGAAGA+TGG | + | chr6_1:41424031-41424050 | None:intergenic | 25.0% |
! | TTTTATCTCTCATAACCCTA+AGG | - | chr6_1:41422086-41422105 | Msa0885380:intron | 30.0% |
CATGATACGAAAACAGAATT+TGG | + | chr6_1:41422160-41422179 | None:intergenic | 30.0% | |
TATCTGATATTGCTATCTCA+AGG | - | chr6_1:41422223-41422242 | Msa0885380:intron | 30.0% | |
GAATACTTGACTTTATGTAG+TGG | - | chr6_1:41422292-41422311 | Msa0885380:intron | 30.0% | |
!! | GACTTATTTGACTTTTCTCA+AGG | - | chr6_1:41422339-41422358 | Msa0885380:intron | 30.0% |
TGACCTAATGAAACTTTACA+TGG | + | chr6_1:41422432-41422451 | None:intergenic | 30.0% | |
!! | TTTAAGAGCCTTTAGAATTC+AGG | - | chr6_1:41422461-41422480 | Msa0885380:CDS | 30.0% |
AATCAACACCTGAATTCTAA+AGG | + | chr6_1:41422472-41422491 | None:intergenic | 30.0% | |
TATCTGTGAACGAAAATTTC+AGG | - | chr6_1:41422672-41422691 | Msa0885380:intron | 30.0% | |
TGTATAAGGAAACAAATCTC+AGG | - | chr6_1:41422716-41422735 | Msa0885380:intron | 30.0% | |
CACAACAATAGAATAAAGCA+AGG | + | chr6_1:41423061-41423080 | None:intergenic | 30.0% | |
ATTGAAATGTACACATTGCA+AGG | + | chr6_1:41423168-41423187 | None:intergenic | 30.0% | |
AAAAACTTAGTTGTTACAGG+AGG | + | chr6_1:41423420-41423439 | None:intergenic | 30.0% | |
GAAAATAAGAAGACATGCAA+AGG | + | chr6_1:41423540-41423559 | None:intergenic | 30.0% | |
TATATGTGAATCTGCATATG+TGG | - | chr6_1:41423790-41423809 | Msa0885380:intron | 30.0% | |
! | TGTGGCTATATTTTATGCAT+TGG | - | chr6_1:41423808-41423827 | Msa0885380:intron | 30.0% |
ATATGAAATGCCAACTGATT+TGG | - | chr6_1:41423939-41423958 | Msa0885380:intron | 30.0% | |
AGAAAAAAAGGGAGGATATT+TGG | - | chr6_1:41423977-41423996 | Msa0885380:intron | 30.0% | |
! | TTGATTTGAAGATGGAATCA+AGG | + | chr6_1:41424023-41424042 | None:intergenic | 30.0% |
TGCTGTCATTATGAAACATT+TGG | - | chr6_1:41424201-41424220 | Msa0885380:intron | 30.0% | |
GCTGTCATTATGAAACATTT+GGG | - | chr6_1:41424202-41424221 | Msa0885380:intron | 30.0% | |
! | ATGAAACATTTGGGATTTGT+TGG | - | chr6_1:41424211-41424230 | Msa0885380:intron | 30.0% |
GTGTTGGGAATGAGAAAAAA+TGG | - | chr6_1:41421752-41421771 | Msa0885380:CDS | 35.0% | |
! | AATGGGCTTATATGTCTGAA+AGG | + | chr6_1:41421805-41421824 | None:intergenic | 35.0% |
! | GATCAGAAAAATCGCGTTTT+AGG | + | chr6_1:41421875-41421894 | None:intergenic | 35.0% |
!! | CTGTTTGGATTGTTTCTGTT+TGG | - | chr6_1:41422247-41422266 | Msa0885380:intron | 35.0% |
!!! | TGCTATGTTGTTTTAGCTTC+TGG | - | chr6_1:41422512-41422531 | Msa0885380:intron | 35.0% |
ATCAACAAGTAGTTTCCGAT+CGG | + | chr6_1:41422627-41422646 | None:intergenic | 35.0% | |
! | CAGTACAAGTTGAAGTTGAA+TGG | - | chr6_1:41422771-41422790 | Msa0885380:intron | 35.0% |
GTTGAAGTTGAATGGCTTAT+AGG | - | chr6_1:41422779-41422798 | Msa0885380:intron | 35.0% | |
TCTATGAGTTTGGTATCTCA+TGG | - | chr6_1:41422812-41422831 | Msa0885380:intron | 35.0% | |
TAAACTGAAACAGTCCAAAC+AGG | + | chr6_1:41422838-41422857 | None:intergenic | 35.0% | |
! | TTCTCTAAAAATAGCCGAAC+AGG | + | chr6_1:41422961-41422980 | None:intergenic | 35.0% |
! | ATTCTACTTTGTGTGCTACT+TGG | - | chr6_1:41423218-41423237 | Msa0885380:intron | 35.0% |
ATCGCAAAAAGGATCAAACT+TGG | - | chr6_1:41423629-41423648 | Msa0885380:intron | 35.0% | |
TCGCAAAAAGGATCAAACTT+GGG | - | chr6_1:41423630-41423649 | Msa0885380:intron | 35.0% | |
AAAAAGGATCAAACTTGGGT+GGG | - | chr6_1:41423634-41423653 | Msa0885380:intron | 35.0% | |
CACATGAGTGCAAACATATA+TGG | + | chr6_1:41423709-41423728 | None:intergenic | 35.0% | |
TCAACTCAGAATACCACATT+TGG | - | chr6_1:41423882-41423901 | Msa0885380:intron | 35.0% | |
CAGTTGGCATTTCATATGTT+TGG | + | chr6_1:41423936-41423955 | None:intergenic | 35.0% | |
!! | TGCCAACTGATTTGGATATA+TGG | - | chr6_1:41423947-41423966 | Msa0885380:intron | 35.0% |
!! | GCCAACTGATTTGGATATAT+GGG | - | chr6_1:41423948-41423967 | Msa0885380:intron | 35.0% |
ACCCATATATCCAAATCAGT+TGG | + | chr6_1:41423952-41423971 | None:intergenic | 35.0% | |
GGTAGATTAGAAAAAAAGGG+AGG | - | chr6_1:41423969-41423988 | Msa0885380:intron | 35.0% | |
! | TGGAATCAAGGTTTTTGATG+TGG | + | chr6_1:41424011-41424030 | None:intergenic | 35.0% |
AAACACACATGCTAATTCAG+AGG | - | chr6_1:41424048-41424067 | Msa0885380:intron | 35.0% | |
AACAAGAAAAGTTGCAGATG+AGG | - | chr6_1:41424128-41424147 | Msa0885380:intron | 35.0% | |
TGCTCATTTGATTCACTGTT+GGG | + | chr6_1:41424259-41424278 | None:intergenic | 35.0% | |
ATGCTCATTTGATTCACTGT+TGG | + | chr6_1:41424260-41424279 | None:intergenic | 35.0% | |
! | TTTTGTTGAAGATGTTGACG+AGG | - | chr6_1:41424336-41424355 | Msa0885380:intron | 35.0% |
! | ACGCGATTTTTCTGATCTGA+AGG | - | chr6_1:41421878-41421897 | Msa0885380:CDS | 40.0% |
ATTCCGTTGAAGCTCGAAAA+TGG | - | chr6_1:41421912-41421931 | Msa0885380:CDS | 40.0% | |
!!! | TTGCCATTTTCGAGCTTCAA+CGG | + | chr6_1:41421918-41421937 | None:intergenic | 40.0% |
TTGCTATCTCAAGGACTGTT+TGG | - | chr6_1:41422232-41422251 | Msa0885380:intron | 40.0% | |
! | GACTTTTCTCAAGGCATGTT+TGG | - | chr6_1:41422348-41422367 | Msa0885380:intron | 40.0% |
TACTTATCTCAAGGCCTGTT+CGG | - | chr6_1:41422944-41422963 | Msa0885380:intron | 40.0% | |
TGCACATAGTAGTTCAGTTG+TGG | - | chr6_1:41423128-41423147 | Msa0885380:intron | 40.0% | |
CATAGTAGTTCAGTTGTGGT+TGG | - | chr6_1:41423132-41423151 | Msa0885380:intron | 40.0% | |
GTAGTTGACGTCGATATTGT+TGG | + | chr6_1:41423372-41423391 | None:intergenic | 40.0% | |
AACTTAGTTGTTACAGGAGG+TGG | + | chr6_1:41423417-41423436 | None:intergenic | 40.0% | |
AAGTAAAACTCAGTCAGCGA+CGG | + | chr6_1:41423601-41423620 | None:intergenic | 40.0% | |
! | GATCCTTTTTGCGATGTGTA+CGG | + | chr6_1:41423624-41423643 | None:intergenic | 40.0% |
CAAAAAGGATCAAACTTGGG+TGG | - | chr6_1:41423633-41423652 | Msa0885380:intron | 40.0% | |
! | GTGTTGCTCAATGGAAGATT+TGG | - | chr6_1:41423726-41423745 | Msa0885380:intron | 40.0% |
CAGAATACCACATTTGGTCT+AGG | - | chr6_1:41423888-41423907 | Msa0885380:intron | 40.0% | |
! | AGGTTTTTGATGTGGATCCA+AGG | + | chr6_1:41424003-41424022 | None:intergenic | 40.0% |
! | ACTGTTGGGGTTTGAAACAT+GGG | + | chr6_1:41424245-41424264 | None:intergenic | 40.0% |
GCTCATTTGATTCACTGTTG+GGG | + | chr6_1:41424258-41424277 | None:intergenic | 40.0% | |
TTCTGTTGAAGATGTCGATG+AGG | - | chr6_1:41424303-41424322 | Msa0885380:intron | 40.0% | |
CTGATCTGAAGGAAGAACGA+TGG | - | chr6_1:41421889-41421908 | Msa0885380:CDS | 45.0% | |
AGAGCTTCAACGAGCTTCAA+TGG | + | chr6_1:41421949-41421968 | None:intergenic | 45.0% | |
GCAGAGAAGAGAGCTTCAAT+CGG | + | chr6_1:41422056-41422075 | None:intergenic | 45.0% | |
CTGAGCGAGTAGTTTCAGAT+CGG | + | chr6_1:41422598-41422617 | None:intergenic | 45.0% | |
TTGGTATCTCATGGCCTGTT+TGG | - | chr6_1:41422821-41422840 | Msa0885380:intron | 45.0% | |
GGGATAGGTGGGAACATATA+TGG | + | chr6_1:41423325-41423344 | None:intergenic | 45.0% | |
GTAAAGAGGAAGGGATAGGT+GGG | + | chr6_1:41423336-41423355 | None:intergenic | 45.0% | |
AGTAAAGAGGAAGGGATAGG+TGG | + | chr6_1:41423337-41423356 | None:intergenic | 45.0% | |
CAGAGTAAAGAGGAAGGGAT+AGG | + | chr6_1:41423340-41423359 | None:intergenic | 45.0% | |
! | GTCGATATTGTTGGTTGTGG+TGG | + | chr6_1:41423363-41423382 | None:intergenic | 45.0% |
! | GACGTCGATATTGTTGGTTG+TGG | + | chr6_1:41423366-41423385 | None:intergenic | 45.0% |
TAGTTGTTACAGGAGGTGGA+GGG | + | chr6_1:41423413-41423432 | None:intergenic | 45.0% | |
TTAGTTGTTACAGGAGGTGG+AGG | + | chr6_1:41423414-41423433 | None:intergenic | 45.0% | |
CTTCCGTACACATCGCAAAA+AGG | - | chr6_1:41423618-41423637 | Msa0885380:intron | 45.0% | |
! | TGCACTCATGTGTTGCTCAA+TGG | - | chr6_1:41423717-41423736 | Msa0885380:intron | 45.0% |
TACCACATTTGGTCTAGGAG+AGG | - | chr6_1:41423893-41423912 | Msa0885380:intron | 45.0% | |
ATCCTCTCCTAGACCAAATG+TGG | + | chr6_1:41423898-41423917 | None:intergenic | 45.0% | |
AAAGGGAGGATATTTGGCCT+TGG | - | chr6_1:41423983-41424002 | Msa0885380:intron | 45.0% | |
CACACATGCTAATTCAGAGG+AGG | - | chr6_1:41424051-41424070 | Msa0885380:intron | 45.0% | |
! | CACTGTTGGGGTTTGAAACA+TGG | + | chr6_1:41424246-41424265 | None:intergenic | 45.0% |
! | CGATCTGAAACTACTCGCTC+AGG | - | chr6_1:41422596-41422615 | Msa0885380:intron | 50.0% |
CTCGCTCAGGTTATTCCGAT+CGG | - | chr6_1:41422609-41422628 | Msa0885380:intron | 50.0% | |
GGTGGCAGAGTAAAGAGGAA+GGG | + | chr6_1:41423345-41423364 | None:intergenic | 50.0% | |
TGGTGGCAGAGTAAAGAGGA+AGG | + | chr6_1:41423346-41423365 | None:intergenic | 50.0% | |
GTTGTGGTGGCAGAGTAAAG+AGG | + | chr6_1:41423350-41423369 | None:intergenic | 50.0% | |
TACAGGAGGTGGAGGGTGAC+AGG | + | chr6_1:41423406-41423425 | None:intergenic | 60.0% | |
AGGAGGTGGAGGGTGACAGG+AGG | + | chr6_1:41423403-41423422 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 41421683 | 41424387 | 41421683 | ID=Msa0885380;Name=Msa0885380 |
chr6_1 | mRNA | 41421683 | 41424387 | 41421683 | ID=Msa0885380-mRNA-1;Parent=Msa0885380;Name=Msa0885380-mRNA-1;_AED=0.30;_eAED=0.41;_QI=0|0|0.33|0.66|1|1|3|0|174 |
chr6_1 | exon | 41424379 | 41424387 | 41424379 | ID=Msa0885380-mRNA-1:exon:9185;Parent=Msa0885380-mRNA-1 |
chr6_1 | exon | 41422392 | 41422493 | 41422392 | ID=Msa0885380-mRNA-1:exon:9184;Parent=Msa0885380-mRNA-1 |
chr6_1 | exon | 41421683 | 41422096 | 41421683 | ID=Msa0885380-mRNA-1:exon:9183;Parent=Msa0885380-mRNA-1 |
chr6_1 | CDS | 41424379 | 41424387 | 41424379 | ID=Msa0885380-mRNA-1:cds;Parent=Msa0885380-mRNA-1 |
chr6_1 | CDS | 41422392 | 41422493 | 41422392 | ID=Msa0885380-mRNA-1:cds;Parent=Msa0885380-mRNA-1 |
chr6_1 | CDS | 41421683 | 41422096 | 41421683 | ID=Msa0885380-mRNA-1:cds;Parent=Msa0885380-mRNA-1 |
Gene Sequence |
Protein sequence |