AlfalfaGEDB | Msa0894750

M. sativa cultivar zhongmu-4 / Msa0894750

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0894750	XP_003619794.1	94.333	600	34	0	1	600	16	615	0.0	1171

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0894750	sp\|Q9LP77\|Y1848_ARATH	34.181	629	337	17	21	593	36	643	3.50e-102	326

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0894750	G7KPP5	94.333	600	34	0	1	600	16	615	0.0	1171

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0894750	Msa0994870	0.928191	4.090964e-92	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0894750	MtrunA17_Chr6g0478181	82.500	600	43	2	1	600	16	553	0.0	993
Msa0894750	MtrunA17_Chr1g0209521	34.667	600	322	15	47	593	56	638	4.55e-102	323
Msa0894750	MtrunA17_Chr3g0128551	34.806	566	330	11	56	593	61	615	6.43e-100	317
Msa0894750	MtrunA17_Chr3g0108301	34.655	580	329	13	56	600	70	634	1.98e-99	316
Msa0894750	MtrunA17_Chr8g0393211	33.901	646	334	18	21	600	36	654	1.08e-98	315
Msa0894750	MtrunA17_Chr5g0396941	34.347	559	316	14	56	600	59	580	2.28e-97	310
Msa0894750	MtrunA17_Chr8g0344471	32.822	652	347	13	21	593	32	671	1.59e-96	310
Msa0894750	MtrunA17_Chr5g0432851	34.790	595	344	14	34	600	57	635	2.18e-96	308
Msa0894750	MtrunA17_Chr4g0062911	33.819	618	347	16	20	598	29	623	1.85e-95	306
Msa0894750	MtrunA17_Chr5g0423121	34.146	615	331	18	16	592	29	607	2.61e-95	305

Showing 1 to 10 of 529 entries

Previous1 2 3 4 5…53Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0894750	AT1G48480.1	34.181	629	337	17	21	593	36	643	3.56e-103	326
Msa0894750	AT2G26730.1	35.862	580	317	17	56	594	56	621	2.83e-98	313
Msa0894750	AT3G02880.1	34.314	612	343	17	20	594	28	617	2.15e-96	308
Msa0894750	AT3G08680.1	34.466	618	348	17	9	592	20	614	3.38e-96	308
Msa0894750	AT3G08680.2	34.466	618	348	17	9	592	20	614	3.38e-96	308
Msa0894750	AT1G68400.1	34.286	630	334	19	21	593	31	637	1.32e-95	307
Msa0894750	AT5G58300.3	35.227	616	335	21	21	600	48	635	1.83e-95	306
Msa0894750	AT5G58300.1	35.227	616	335	21	21	600	48	635	1.83e-95	306
Msa0894750	AT5G58300.2	35.227	616	335	21	21	600	48	635	1.83e-95	306
Msa0894750	AT5G05160.1	32.872	578	335	13	54	595	59	619	6.54e-95	304

Showing 1 to 10 of 513 entries

Previous1 2 3 4 5…52Next

Find 83 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAACCTGTAAGATT+AGG	0.462937	6_1:-81166880	None:intergenic
AAAACTGATGTATATTGTTT+TGG	0.290554	6_1:+81169727	Msa0894750:CDS
AAAATTCCTGGTCATATATT+AGG	0.339239	6_1:+81169778	Msa0894750:CDS
AACAACCTTAGTATATGGTT+TGG	0.438759	6_1:+81166715	Msa0894750:CDS
AAGTAATGATCTTTCAGATT+GGG	0.411640	6_1:+81169819	Msa0894750:CDS
AATAAAGCTTCTCTTTCTTG+TGG	0.478988	6_1:-81166619	None:intergenic
AATCAGCAGATGCAGTTGCT+AGG	0.526677	6_1:+81168287	Msa0894750:CDS
AATGATGGTTGATCAAAAGG+TGG	0.640246	6_1:-81167021	None:intergenic
AATTTGCATAGAAATTGGAC+AGG	0.587066	6_1:+81166676	Msa0894750:CDS
ACATTGAAACTTATCAATGA+TGG	0.514961	6_1:-81167036	None:intergenic

Showing 1 to 10 of 83 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAAAGCTTCTCTTTCTTG+TGG	-	chr6_1:81166622-81166641	None:intergenic	30.0%
AATTTGCATAGAAATTGGAC+AGG	+	chr6_1:81166676-81166695	Msa0894750:CDS	30.0%
AACAACCTTAGTATATGGTT+TGG	+	chr6_1:81166715-81166734	Msa0894750:CDS	30.0%
TGATACCAAACCATATACTA+AGG	-	chr6_1:81166723-81166742	None:intergenic	30.0%
TTGGTATCACTTGTTCAAAT+TGG	+	chr6_1:81166734-81166753	Msa0894750:CDS	30.0%
AAAACCAAACCTGTAAGATT+AGG	-	chr6_1:81166883-81166902	None:intergenic	30.0%
TGCAATTCAACATATTCCAA+AGG	-	chr6_1:81166952-81166971	None:intergenic	30.0%
GGAGTTGCAAGAAAATTATT+TGG	+	chr6_1:81166987-81167006	Msa0894750:CDS	30.0%
ATCAATGATGGTTGATCAAA+AGG	-	chr6_1:81167027-81167046	None:intergenic	30.0%
GTGTCATATAATCATTTGGT+AGG	+	chr6_1:81167057-81167076	Msa0894750:CDS	30.0%

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	81166565	81170044	81166565	ID=Msa0894750;Name=Msa0894750
chr6_1	mRNA	81166565	81170044	81166565	ID=Msa0894750-mRNA-1;Parent=Msa0894750;Name=Msa0894750-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|600
chr6_1	exon	81166565	81167372	81166565	ID=Msa0894750-mRNA-1:exon:13589;Parent=Msa0894750-mRNA-1
chr6_1	exon	81168033	81168422	81168033	ID=Msa0894750-mRNA-1:exon:13590;Parent=Msa0894750-mRNA-1
chr6_1	exon	81169440	81170044	81169440	ID=Msa0894750-mRNA-1:exon:13591;Parent=Msa0894750-mRNA-1
chr6_1	CDS	81166565	81167372	81166565	ID=Msa0894750-mRNA-1:cds;Parent=Msa0894750-mRNA-1
chr6_1	CDS	81168033	81168422	81168033	ID=Msa0894750-mRNA-1:cds;Parent=Msa0894750-mRNA-1
chr6_1	CDS	81169440	81170044	81169440	ID=Msa0894750-mRNA-1:cds;Parent=Msa0894750-mRNA-1

Gene Sequence

>Msa0894750

ATGCTTTCATTGAACAAAGTCTTGTGTATTGAAATTGAAATCAAGGATTTTCATCCACAAGAAAGAGAAGCTTTATTACTCATAAGGGATTCTTTAAATTCTTCATCTATAAATTTGCATAGAAATTGGACAGGACCACCTTGTATAGAAAACAACCTTAGTATATGGTTTGGTATCACTTGTTCAAATTGGCATGTTGTTCATATTACAATTCAAGGAGTCAACCTTAGTGGCTATTTACCTTCCACATTTCTTCAAAACATAACTTTCTTGAGGCAAATTGATTTCAGAAACAATGCACTTTTTGGATTATTGCCTAATCTTACAGGTTTGGTTTTCTTAGAAGAAGTTAAGCTTTCATTTAATCATTTCTCAGGTTCAATACCTTTGGAATATGTTGAATTGCATAGTCTTAAAGTTTTGGAGTTGCAAGAAAATTATTTGGATGGTGAAATTCCACCTTTTGATCAACCATCATTGATAAGTTTCAATGTGTCATATAATCATTTGGTAGGGAAAATTCCTGAAACTTCTTTGCTTCAAAGGTTTCCAAAGAGTTATTTTGATGATAATTCTGATCTTTGTGGAAAACCATTGGATAAGTTATGTACTGCTGAATCTCCTGCACCATTTCCTTTTGCTATTCCACCTAGTTCTTCAATGGAAACAAATAAGAAGAGGATTCATGTTTGGATTATTGTTTTGATTGCTATTGTTGCTGCTTTGTGTCTTTTTCTGATGATTATTGCTTTCTTGTTTTGTAAAAGACAAGCTAGAGGAAATGAAACAAGAAGAAATGATTCAGCAAGGTATGTTTTTGGAGCATGGGCAAAGAAGATGGTATCTAATGTAGCAAACAATGAAGATTCTGAAAAATTAGGCCAATTAGAATTTTCCAACAAGAAATTTCAAGTTTTTGATATGGATGATTTGTTAAGGGCATCAGCAGAAGTGTTAGGAAGAGGAGATTTTGGTGTTACATATAAAGCAACACTTGAAAGCGGTAATGTTGTTGCAGTAAAGAGACTTAGCTACATGAATGAATTGAGCAAGAAGGAATTTAATCAGCAGATGCAGTTGCTAGGAGAGATAAAGCATGAAAATGTAGCTGAAATTATCTCCTTTTATCATTCAGAAGATCAAAAGCTTGTCATATATGAACTTGTCTCTGATGGCACTTTGTCTGAGCTTCTACATGAGGGTAGAGGAATTGGAAGAATACCTCTTGATTGGACAACAAGACTTGCCATTATCAAAGACATAGCAAAAGGTCTTGATTTCCTTCACCAATTTTTGTCTTCTCACAAAGTTCCACATGCAAATCTCAAATCATCCAATGTTCTAATCCATCAAGACAACCAAGGTTACCATTCCAAGCTCACTGACTATGGCTTCTTACCTTTACTCTCATCATCTATGAAAAATGCAGAAAAGCTATCAATAAGCAAGTCACCAGAATTTGTTAAAAGGAAAAAGTTGACACACAAAACTGATGTATATTGTTTTGGTATCATTATGCTAGAGATTATAACTGGAAAAATTCCTGGTCATATATTAGGCAATGAAGTTGAAGAAACAAGTAATGATCTTTCAGATTGGGTTAGAACTGTGGTGAATAATGATTGGTCTACAGATATATTTGATTTGGAAATATTAGCAGAAAGAGAAGGACATGATGCAATGTTGAATTTAACTGAGATAGCATTGGAGTGTACTGATATGATGCCTGAGAATAGGCCTAAAATGAGTTTAGTGTTGAAGAGAATTGAAGAGATAGAGCAAATGATAAAAGACAATGAGTGA

Protein sequence

>Msa0894750

MLSLNKVLCIEIEIKDFHPQEREALLLIRDSLNSSSINLHRNWTGPPCIENNLSIWFGITCSNWHVVHITIQGVNLSGYLPSTFLQNITFLRQIDFRNNALFGLLPNLTGLVFLEEVKLSFNHFSGSIPLEYVELHSLKVLELQENYLDGEIPPFDQPSLISFNVSYNHLVGKIPETSLLQRFPKSYFDDNSDLCGKPLDKLCTAESPAPFPFAIPPSSSMETNKKRIHVWIIVLIAIVAALCLFLMIIAFLFCKRQARGNETRRNDSARYVFGAWAKKMVSNVANNEDSEKLGQLEFSNKKFQVFDMDDLLRASAEVLGRGDFGVTYKATLESGNVVAVKRLSYMNELSKKEFNQQMQLLGEIKHENVAEIISFYHSEDQKLVIYELVSDGTLSELLHEGRGIGRIPLDWTTRLAIIKDIAKGLDFLHQFLSSHKVPHANLKSSNVLIHQDNQGYHSKLTDYGFLPLLSSSMKNAEKLSISKSPEFVKRKKLTHKTDVYCFGIIMLEIITGKIPGHILGNEVEETSNDLSDWVRTVVNNDWSTDIFDLEILAEREGHDAMLNLTEIALECTDMMPENRPKMSLVLKRIEEIEQMIKDNE*