AlfalfaGEDB | Msa0897960

M. sativa cultivar zhongmu-4 / Msa0897960

KEGG: K04730
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897960	XP_013452957.1	84.038	639	87	3	1	639	1	624	0.0	1102

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897960	sp\|Q9C6K9\|LRL11_ARATH	56.154	260	110	2	373	628	308	567	2.50e-89	293
Msa0897960	sp\|Q9C6K9\|LRL11_ARATH	43.974	307	170	2	13	317	263	569	8.56e-67	233

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897960	A0A072UMA8	84.038	639	87	3	1	639	1	624	0.0	1102

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0388390	Msa0897960	0.854113	1.528156e-61	-8.615850e-47
Msa0897960	Msa0924590	0.849069	4.097268e-60	-8.615850e-47
Msa0897960	Msa0931830	0.860156	2.514034e-63	-8.615850e-47
Msa0897960	Msa0931900	0.869371	3.254729e-66	-8.615850e-47
Msa0897960	Msa0963510	0.882526	9.678281e-71	-8.615850e-47
Msa0897960	Msa0963540	0.867430	1.377119e-65	-8.615850e-47
Msa0897960	Msa0998330	0.877108	8.186997e-69	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897960	MtrunA17_Chr6g0483831	92.509	267	20	0	373	639	8	274	0.0	514
Msa0897960	MtrunA17_Chr6g0483831	42.222	270	152	2	52	320	2	268	2.23e-68	224
Msa0897960	MtrunA17_Chr6g0483771	90.262	267	26	0	373	639	8	274	4.02e-177	503
Msa0897960	MtrunA17_Chr6g0483771	42.222	270	152	2	52	320	2	268	4.23e-67	220
Msa0897960	MtrunA17_Chr6g0483781	92.405	237	18	0	92	328	1	237	8.27e-159	455
Msa0897960	MtrunA17_Chr6g0483781	42.489	233	130	2	409	638	3	234	9.16e-56	189
Msa0897960	MtrunA17_Chr6g0483841	84.000	250	39	1	92	341	1	249	2.16e-148	431
Msa0897960	MtrunA17_Chr6g0483841	42.918	233	129	2	409	638	3	234	5.09e-55	189
Msa0897960	MtrunA17_Chr1g0209361	56.981	265	111	2	373	634	360	624	1.34e-90	295
Msa0897960	MtrunA17_Chr1g0209361	45.425	306	161	4	19	319	318	622	2.01e-74	252

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897960	AT1G25390.1	56.154	260	110	2	373	628	308	567	2.54e-90	293
Msa0897960	AT1G25390.1	43.974	307	170	2	13	317	263	569	8.70e-68	233
Msa0897960	AT1G25390.2	56.154	260	110	2	373	628	308	567	2.54e-90	293
Msa0897960	AT1G25390.2	43.974	307	170	2	13	317	263	569	8.70e-68	233
Msa0897960	AT1G66880.3	55.985	259	111	2	373	628	363	621	7.38e-86	283
Msa0897960	AT1G66880.3	40.938	320	184	4	9	326	316	632	3.28e-66	230
Msa0897960	AT1G18390.1	53.962	265	119	2	373	634	355	619	8.12e-85	279
Msa0897960	AT1G18390.1	41.554	296	170	3	27	320	324	618	1.10e-63	222
Msa0897960	AT1G18390.2	53.962	265	119	2	373	634	361	625	9.22e-85	279
Msa0897960	AT1G18390.2	41.554	296	170	3	27	320	330	624	4.09e-64	224

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Find 147 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAAAGACGGCAGAG+AGG	0.726033	6_1:-90585887	Msa0897960:CDS
AAAAGCGACGTCTATAGCTT+TGG	0.439247	6_1:-90585406	Msa0897960:CDS
AAAAGGAAGCAATATTCTGC+TGG	0.482538	6_1:-90585569	Msa0897960:CDS
AAACCGGCAAGTTTAATGCA+AGG	0.640775	6_1:-90585355	Msa0897960:CDS
AAAGAAAGAAGCACAATCGT+AGG	0.637665	6_1:+90589477	None:intergenic
AAAGAGAAATATAGTAAGGA+AGG	0.439080	6_1:+90589188	None:intergenic
AAATGCAAGCTCAGCCGTAG+CGG	0.650540	6_1:+90586777	None:intergenic
AACAAGTGGTTATGTAGACC+CGG	0.601346	6_1:-90587022	Msa0897960:CDS
AACTTGAGTCCTATGTTATT+TGG	0.179348	6_1:+90585098	None:intergenic
AAGGAAATAGTAACGGATAT+TGG	0.347610	6_1:-90584823	Msa0897960:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGTCAACAATTTATGTGT+TGG	-	chr6_1:90584798-90584817	Msa0897960:three_prime_UTR	30.0%
GTGTCAACAATTTATGTGTT+GGG	-	chr6_1:90584799-90584818	Msa0897960:three_prime_UTR	30.0%
CAAGATAAACTTATGAAGCA+CGG	+	chr6_1:90584963-90584982	None:intergenic	30.0%
GATAGGAATAAAGAAGGAAA+GGG	+	chr6_1:90584995-90585014	None:intergenic	30.0%
TGATAGGAATAAAGAAGGAA+AGG	+	chr6_1:90584996-90585015	None:intergenic	30.0%
AATAATCACGATGTCAATCT+AGG	-	chr6_1:90585535-90585554	Msa0897960:CDS	30.0%
TGGTAATTCAAAGTTCGATT+AGG	+	chr6_1:90585828-90585847	None:intergenic	30.0%
TTCTCAACTTTGAATCATAG+AGG	-	chr6_1:90585958-90585977	Msa0897960:intron	30.0%
CTTCTTACCATAATATACAG+TGG	+	chr6_1:90586178-90586197	None:intergenic	30.0%
TCTAAAGATTCAATCTGAAG+GGG	+	chr6_1:90586412-90586431	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	90584741	90589512	90584741	ID=Msa0897960;Name=Msa0897960
chr6_1	mRNA	90584741	90589512	90584741	ID=Msa0897960-mRNA-1;Parent=Msa0897960;Name=Msa0897960-mRNA-1;_AED=0.27;_eAED=0.27;_QI=432\|0.8\|0.83\|1\|0.6\|0.33\|6\|262\|639
chr6_1	exon	90584741	90584995	90584741	ID=Msa0897960-mRNA-1:exon:15448;Parent=Msa0897960-mRNA-1
chr6_1	exon	90585101	90585910	90585101	ID=Msa0897960-mRNA-1:exon:15447;Parent=Msa0897960-mRNA-1
chr6_1	exon	90586195	90586332	90586195	ID=Msa0897960-mRNA-1:exon:15446;Parent=Msa0897960-mRNA-1
chr6_1	exon	90586674	90587480	90586674	ID=Msa0897960-mRNA-1:exon:15445;Parent=Msa0897960-mRNA-1
chr6_1	exon	90588064	90588275	90588064	ID=Msa0897960-mRNA-1:exon:15444;Parent=Msa0897960-mRNA-1
chr6_1	exon	90589121	90589512	90589121	ID=Msa0897960-mRNA-1:exon:15443;Parent=Msa0897960-mRNA-1
chr6_1	five_prime_UTR	90589121	90589512	90589121	ID=Msa0897960-mRNA-1:five_prime_utr;Parent=Msa0897960-mRNA-1
chr6_1	five_prime_UTR	90588236	90588275	90588236	ID=Msa0897960-mRNA-1:five_prime_utr;Parent=Msa0897960-mRNA-1
chr6_1	CDS	90588064	90588235	90588064	ID=Msa0897960-mRNA-1:cds;Parent=Msa0897960-mRNA-1
chr6_1	CDS	90586674	90587480	90586674	ID=Msa0897960-mRNA-1:cds;Parent=Msa0897960-mRNA-1
chr6_1	CDS	90586195	90586332	90586195	ID=Msa0897960-mRNA-1:cds;Parent=Msa0897960-mRNA-1
chr6_1	CDS	90585108	90585910	90585108	ID=Msa0897960-mRNA-1:cds;Parent=Msa0897960-mRNA-1
chr6_1	three_prime_UTR	90585101	90585107	90585101	ID=Msa0897960-mRNA-1:three_prime_utr;Parent=Msa0897960-mRNA-1
chr6_1	three_prime_UTR	90584741	90584995	90584741	ID=Msa0897960-mRNA-1:three_prime_utr;Parent=Msa0897960-mRNA-1

Gene Sequence

>Msa0897960

ATGGGGTGGGATCTCTGTATGTGCAGCTGCTTCACTAGCACTTCTGACACATTTCGAAAGCAGAATAAATCGAAGTGGCAAATCTTCTCATATGAGCAACTTAGAAAAGCCACATATTATTTTGATCAATCTCGTATTCTTGATCAGAAAGGCTCTGCCACTGTATATTATGGAAAACTTAAGAATGGTTGTGAGATTGCAGTCCAATGCTTCAATGAAGACAAGTACAGCATATTGAGACAGTTCATCGATGAAGCTGCATTCCTAAACTACATTCCACACAAAAACCTTGTTACAATTTATGGATGTGCGACTCATCAAAAGGAGTCCTTGCTAGTACACGAGTACGTGTCCAACGGGACTCTTGCTGCTCATATTCAAGGCCGAATATCAGATAGCGGAACATCGTTAACTTGGCCTAACAGATTAGATATTGCAATCGATATAGCAAATGCATTGGAATATCTTCACTATAATGGCATTGTGCACCGTAATGTAATGTCTCACAATATTTTCCTTGATATAAATTTTTGTGCTAAAGTTGGTAACTTACATTTGTCAAAGAAACTTGATATTGGAGCAACCAAAGCTACAAGAGACTTGATCAGAACAAGTGGTTATGTAGACCCGGAACTTGTGTCAAAAGGCTTACTTGGTGTCGAAAATGATGTTTATAGTTTTGGGGTGGTGTTGTGTGAGCTTGTGTCATCTATGCTTGCAGAATATTATATTCAGAATGAAGAAGAATGTCTGGCAACCCTTTTACGCAAAAAAGTTGAAAACCAAGCTTTAGTGGAGCTGTTGGATCAAAGACTTGGCTTCGAATCAGACCTTAAGATCAAAAAGATGATGACCGCTACGGCTGAGCTTGCATTTTGGTGTTTGAAATGTCCACAAGAATTAAGACCTAACATGGAACAAGTGCTAGAGACTCTCCATGGCATAAAGCAAGGGAGATACGAGATAATTTCAATAAAAGGCTCTTACTATGTAATTCATATGTCTCAGCTTTCAAAATCTTCCACCATGCCGAACTTGAAGAAGCTACTAACCAGTTTGACACTTTTCTGGGGTCCGGAGGGTTCGGCAGAGTCTACTATGGTAAGAAGCTGCAAAGGAAAACTTAAAGACGGCAGAGAGGTTGCAATAAAACGTTTCCATGAAGAGACAGAAAAAACCATTAATCAATTCATGAAAGAAATTGAGATCTTAAGTCACCTGCATCATGAAAATCTGGTTTCACTTTACGGCTGCAGTTCTCGTCATAGCAACAAGCACATGCTTGTGTACGAGTACATCTCTAATGGAACTCTTACACAACATCTTCACGGATCTTCATGTAGTAAACTATCATGGCTTACTAGATTGAATATTGCCATTGAAACTGCGAACGCCTTGGTATATCTTCACGACTCAGGTATCATCCATCGTGACATAAAAGGAAGCAATATTCTGCTGGATGAAAAATTTTCCGTCAAAGTTGCAGATTTTGGACTCTCGCGGTTACTTCCAGGCAATGTTACCCATGTTTCAACTTTTCCGGTAGGAACTCATGCTTACATTGATCCAGATTACTATAAAACTGGAAGGGTCAGTGAGAAAAGCGACGTCTATAGCTTTGGAGTGCTCTTATTTGAGCTTATATCATCGAAACCGGCAAGTTTAATGCAAGGCACCAAGCGTGTTACTCTTGCTCAATATGCAATGAGTAAAATCTTAAACAAGGAATTAGAGCTACTAGTGGATCAAAGTCTTCAAATTTCTTTTAATAAAAATGTAGTGGAAATGATAACAACAGTGACTGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGGACTCAGGCCAACCATGAAACAGGTTTTAGACACTCTACAAGGCATAAGCAAAGGGAAATGGGGATTCAACCAAATAACATAG

Protein sequence

>Msa0897960

MGWDLCMCSCFTSTSDTFRKQNKSKWQIFSYEQLRKATYYFDQSRILDQKGSATVYYGKLKNGCEIAVQCFNEDKYSILRQFIDEAAFLNYIPHKNLVTIYGCATHQKESLLVHEYVSNGTLAAHIQGRISDSGTSLTWPNRLDIAIDIANALEYLHYNGIVHRNVMSHNIFLDINFCAKVGNLHLSKKLDIGATKATRDLIRTSGYVDPELVSKGLLGVENDVYSFGVVLCELVSSMLAEYYIQNEEECLATLLRKKVENQALVELLDQRLGFESDLKIKKMMTATAELAFWCLKCPQELRPNMEQVLETLHGIKQGRYEIISIKGSYYVIHMSQLSKSSTMPNLKKLLTSLTLFWGPEGSAESTMVRSCKGKLKDGREVAIKRFHEETEKTINQFMKEIEILSHLHHENLVSLYGCSSRHSNKHMLVYEYISNGTLTQHLHGSSCSKLSWLTRLNIAIETANALVYLHDSGIIHRDIKGSNILLDEKFSVKVADFGLSRLLPGNVTHVSTFPVGTHAYIDPDYYKTGRVSEKSDVYSFGVLLFELISSKPASLMQGTKRVTLAQYAMSKILNKELELLVDQSLQISFNKNVVEMITTVTELAFQCVQCPKGLRPTMKQVLDTLQGISKGKWGFNQIT*