Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899420 | XP_013453065.1 | 89.615 | 260 | 25 | 1 | 1 | 258 | 1 | 260 | 1.02e-173 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899420 | A0A072UDC6 | 89.615 | 260 | 25 | 1 | 1 | 258 | 1 | 260 | 4.88e-174 | 490 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044000 | Msa0899420 | 0.814511 | 1.484705e-51 | -8.615850e-47 |
| Msa0899420 | Msa1388510 | 0.800890 | 1.165280e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899420 | MtrunA17_Chr6g0485381 | 89.615 | 260 | 25 | 1 | 1 | 258 | 1 | 260 | 9.39e-178 | 490 |
| Msa0899420 | MtrunA17_Chr2g0331861 | 39.490 | 157 | 90 | 2 | 76 | 228 | 48 | 203 | 7.19e-34 | 122 |
| Msa0899420 | MtrunA17_Chr4g0004451 | 27.097 | 155 | 102 | 3 | 56 | 201 | 5 | 157 | 8.53e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899420 | AT4G13270.1 | 48.498 | 233 | 90 | 6 | 2 | 226 | 3 | 213 | 9.66e-64 | 200 |
| Msa0899420 | AT1G52330.1 | 37.727 | 220 | 111 | 5 | 12 | 227 | 16 | 213 | 3.24e-42 | 144 |
| Msa0899420 | AT1G52330.2 | 38.816 | 152 | 88 | 2 | 58 | 205 | 41 | 191 | 9.58e-32 | 118 |
Find 86 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGAAGTTTGATGGAAAATT+AGG | 0.124353 | 6_1:-94494294 | Msa0899420:CDS |
| TGTTCCGAACTTTGAGTTTC+AGG | 0.179701 | 6_1:+94494535 | None:intergenic |
| CGGTTGATGGTGGGAGGATT+AGG | 0.224460 | 6_1:-94494434 | Msa0899420:CDS |
| TGTGAATAAGAATCGAAATT+AGG | 0.230113 | 6_1:+94494807 | None:intergenic |
| ATAAGTCGAGAATTGGTTTC+GGG | 0.266317 | 6_1:+94494565 | None:intergenic |
| TCCTGTTGTCATGTTGTTGA+TGG | 0.296550 | 6_1:+94494878 | None:intergenic |
| TCACCTCAGGATAGCAGTTT+TGG | 0.316403 | 6_1:+94490534 | None:intergenic |
| CGAAGTTTGATGGAAAATTA+GGG | 0.317289 | 6_1:-94494293 | Msa0899420:CDS |
| GCGGTTGTTGCGACGGTGGA+TGG | 0.317319 | 6_1:+94494713 | None:intergenic |
| GGGTACCGTGGTCGGGAGAT+TGG | 0.336218 | 6_1:-94494468 | Msa0899420:CDS |
| TAAGAATCGAAATTAGGGTT+AGG | 0.357788 | 6_1:+94494813 | None:intergenic |
| GTGAATAAGAATCGAAATTA+GGG | 0.364116 | 6_1:+94494808 | None:intergenic |
| GACACTGTTGCGAAGTTTGA+TGG | 0.374337 | 6_1:-94494303 | Msa0899420:CDS |
| GAGAAAGATAAGTCGAGAAT+TGG | 0.380782 | 6_1:+94494558 | None:intergenic |
| GGTACCGTGGTCGGGAGATT+GGG | 0.380896 | 6_1:-94494467 | Msa0899420:CDS |
| GATAAGTCGAGAATTGGTTT+CGG | 0.390612 | 6_1:+94494564 | None:intergenic |
| GAGGATTAGGGCGCGAGGTT+CGG | 0.390903 | 6_1:-94494421 | Msa0899420:CDS |
| ATTAGGGTTTCTTCCTTTGA+AGG | 0.391818 | 6_1:-94494277 | Msa0899420:intron |
| GGGTTAGGGTTTGAGGGAAG+AGG | 0.393384 | 6_1:+94494828 | None:intergenic |
| GGTTGATGGTGGGAGGATTA+GGG | 0.401839 | 6_1:-94494433 | Msa0899420:CDS |
| CGGTTGTTGCGACGGTGGAT+GGG | 0.404662 | 6_1:+94494714 | None:intergenic |
| GGGACTGTTTCGTCGGTTGA+TGG | 0.407659 | 6_1:-94494447 | Msa0899420:CDS |
| GGTTTGCTTTGATTGAGATA+TGG | 0.415988 | 6_1:+94494586 | None:intergenic |
| GTTCCGAACTTTGAGTTTCA+GGG | 0.419207 | 6_1:+94494536 | None:intergenic |
| GAAATTAGGGTTAGGGTTTG+AGG | 0.424207 | 6_1:+94494821 | None:intergenic |
| AAGAATCGAAATTAGGGTTA+GGG | 0.427330 | 6_1:+94494814 | None:intergenic |
| CTTCCTCTACCCATCGGATC+CGG | 0.444251 | 6_1:-94494637 | Msa0899420:CDS |
| AAATTAGGGTTAGGGTTTGA+GGG | 0.445140 | 6_1:+94494822 | None:intergenic |
| TCTCCCTGAAACTCAAAGTT+CGG | 0.445703 | 6_1:-94494539 | Msa0899420:CDS |
| ATTCGAGCTAGGTGAAGTTC+CGG | 0.463946 | 6_1:+94494618 | None:intergenic |
| ACCATCAACAACATGACAAC+AGG | 0.468714 | 6_1:-94494879 | Msa0899420:exon |
| CTGTTTCGTCGGTTGATGGT+GGG | 0.468751 | 6_1:-94494443 | Msa0899420:CDS |
| CTTCCTCAAAACGTCGTCAT+TGG | 0.469999 | 6_1:-94494753 | Msa0899420:CDS |
| ACGGTGGATGGGGTAGTATG+AGG | 0.482371 | 6_1:+94494725 | None:intergenic |
| TCGGAACAGAGATTTCTTCT+CGG | 0.483622 | 6_1:-94494520 | Msa0899420:CDS |
| TGCGATTCTATTTAACGAAA+GGG | 0.485002 | 6_1:+94494960 | None:intergenic |
| GGAGTACGGCGGCTGTGATA+AGG | 0.488188 | 6_1:+94494682 | None:intergenic |
| TCAGTCACTGGGAGATATGA+TGG | 0.490314 | 6_1:-94489994 | Msa0899420:intron |
| CATAGCAACAATACCTTCAA+AGG | 0.491527 | 6_1:+94494264 | None:intergenic |
| TAGCCTCGGGTACCGTGGTC+GGG | 0.494787 | 6_1:-94494475 | Msa0899420:CDS |
| TATCGAGATGGGAGATATGA+TGG | 0.501753 | 6_1:-94489949 | Msa0899420:CDS |
| CGGTGGATGGGGTAGTATGA+GGG | 0.503018 | 6_1:+94494726 | None:intergenic |
| GATTCGATTGATGTTAGCCT+CGG | 0.513660 | 6_1:-94494489 | Msa0899420:CDS |
| TTAGCCTCGGGTACCGTGGT+CGG | 0.515300 | 6_1:-94494476 | Msa0899420:CDS |
| GGTTGTTGCGACGGTGGATG+GGG | 0.520356 | 6_1:+94494715 | None:intergenic |
| ACTGTTTCGTCGGTTGATGG+TGG | 0.525946 | 6_1:-94494444 | Msa0899420:CDS |
| AAATTGCGGCAGCGAGAAAG+AGG | 0.526708 | 6_1:+94494661 | None:intergenic |
| AGGTGAAGTTCCGGATCCGA+TGG | 0.531237 | 6_1:+94494627 | None:intergenic |
| GTACATTTGCTTCAGTCACT+GGG | 0.531441 | 6_1:-94490005 | Msa0899420:intron |
| ATGCGATTCTATTTAACGAA+AGG | 0.532185 | 6_1:+94494959 | None:intergenic |
| GTTCCGGATCCGATGGGTAG+AGG | 0.540656 | 6_1:+94494634 | None:intergenic |
| TAATATCAGCGCTATCAAGA+TGG | 0.542957 | 6_1:-94489871 | Msa0899420:CDS |
| TATCGAGATGGGAGATATGA+TGG | 0.545399 | 6_1:-94489904 | Msa0899420:CDS |
| AATATCAGTGCTATCGAGAT+GGG | 0.550462 | 6_1:-94489915 | Msa0899420:CDS |
| CGGCTGTGATAAGGTAGTTA+CGG | 0.551149 | 6_1:+94494691 | None:intergenic |
| TAATATCAGCTCTATCGAGA+TGG | 0.551471 | 6_1:-94489961 | Msa0899420:CDS |
| TAATATCAGTGCTATCGAGA+TGG | 0.551614 | 6_1:-94489916 | Msa0899420:CDS |
| AATATCAGCGCTATCAAGAT+GGG | 0.552874 | 6_1:-94489870 | Msa0899420:CDS |
| AATATCAGCTCTATCGAGAT+GGG | 0.558762 | 6_1:-94489960 | Msa0899420:CDS |
| AGTTACGGCGGTTGTTGCGA+CGG | 0.558873 | 6_1:+94494706 | None:intergenic |
| ATTCGATTGATGTTAGCCTC+GGG | 0.566516 | 6_1:-94494488 | Msa0899420:CDS |
| CACTGGGAGATATGATGGAT+CGG | 0.572280 | 6_1:-94489989 | Msa0899420:CDS |
| TTTGGCGTACAATCGTCTGC+TGG | 0.574851 | 6_1:+94490552 | None:intergenic |
| TTTCGTCGGTTGATGGTGGG+AGG | 0.575645 | 6_1:-94494440 | Msa0899420:CDS |
| CAACATGACAACAGGAGGGA+AGG | 0.580047 | 6_1:-94494871 | Msa0899420:exon |
| GGAGATTGGGACTGTTTCGT+CGG | 0.580981 | 6_1:-94494454 | Msa0899420:CDS |
| TATCAAGATGGGAGATATGA+TGG | 0.582758 | 6_1:-94489859 | Msa0899420:CDS |
| GGTGGTCTGTACTATAGCGT+CGG | 0.589595 | 6_1:+94494911 | None:intergenic |
| GGTTGAGCTGAATTCGAGCT+AGG | 0.590528 | 6_1:+94494607 | None:intergenic |
| ATCAACAACATGACAACAGG+AGG | 0.591106 | 6_1:-94494876 | Msa0899420:exon |
| TCTCCCGACCACGGTACCCG+AGG | 0.603408 | 6_1:+94494472 | None:intergenic |
| GATGTTAGCCTCGGGTACCG+TGG | 0.604853 | 6_1:-94494480 | Msa0899420:CDS |
| AAACAATAACTCCTTTGGCA+AGG | 0.609975 | 6_1:+94494328 | None:intergenic |
| AGATGGGAGATATGATGGAT+CGG | 0.612123 | 6_1:-94489944 | Msa0899420:CDS |
| TACGGCGGTTGTTGCGACGG+TGG | 0.612594 | 6_1:+94494709 | None:intergenic |
| CTCATTGAAGACCTTGCCAA+AGG | 0.618259 | 6_1:-94494339 | Msa0899420:CDS |
| GGTGAAGTTCCGGATCCGAT+GGG | 0.634015 | 6_1:+94494628 | None:intergenic |
| GGCAGCGAGAAAGAGGAGTA+CGG | 0.654358 | 6_1:+94494668 | None:intergenic |
| GGATGGGGTAGTATGAGGGA+AGG | 0.656713 | 6_1:+94494730 | None:intergenic |
| GGTGGGAGGATTAGGGCGCG+AGG | 0.667237 | 6_1:-94494426 | Msa0899420:CDS |
| ACGCCAAAACTGCTATCCTG+AGG | 0.698773 | 6_1:-94490537 | Msa0899420:intron |
| CAGTCCCAATCTCCCGACCA+CGG | 0.702152 | 6_1:+94494463 | None:intergenic |
| TCAACAACATGACAACAGGA+GGG | 0.709058 | 6_1:-94494875 | Msa0899420:exon |
| CTGTGATAAGGTAGTTACGG+CGG | 0.726488 | 6_1:+94494694 | None:intergenic |
| TGGGTAGAGGAAGAAAATTG+CGG | 0.735352 | 6_1:+94494647 | None:intergenic |
| AGCGAGAAAGAGGAGTACGG+CGG | 0.742437 | 6_1:+94494671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTACATTTCAATTTTT+GGG | - | chr6_1:94490553-94490572 | Msa0899420:CDS | 10.0% |
| !!! | ATTTATTTTTTTCTTTCTTT+TGG | - | chr6_1:94490608-94490627 | Msa0899420:intron | 10.0% |
| !! | TAAACAATATCAAAAAATTA+TGG | + | chr6_1:94491381-94491400 | None:intergenic | 10.0% |
| !! | AGTTTATATGATAAAATATT+AGG | + | chr6_1:94491955-94491974 | None:intergenic | 10.0% |
| !! | TATATTATATTAAATTTGAG+TGG | + | chr6_1:94492787-94492806 | None:intergenic | 10.0% |
| !!! | ATATTTTTCTTATGATTTTA+AGG | - | chr6_1:94494328-94494347 | Msa0899420:CDS | 10.0% |
| !!! | GTTATTTACATTTCAATTTT+TGG | - | chr6_1:94490552-94490571 | Msa0899420:CDS | 15.0% |
| !!! | TACATTTGTATTTGAAATTT+CGG | - | chr6_1:94490748-94490767 | Msa0899420:intron | 15.0% |
| !! | ACATTAGAATTAAGAAAAAA+TGG | - | chr6_1:94490800-94490819 | Msa0899420:intron | 15.0% |
| !! | CATTAGAATTAAGAAAAAAT+GGG | - | chr6_1:94490801-94490820 | Msa0899420:intron | 15.0% |
| !! | ATTAGAATTAAGAAAAAATG+GGG | - | chr6_1:94490802-94490821 | Msa0899420:intron | 15.0% |
| !!! | ACTTGTTACAAAATAAATAT+AGG | + | chr6_1:94491992-94492011 | None:intergenic | 15.0% |
| !!! | ATATTTATTTTGTAACAAGT+TGG | - | chr6_1:94491992-94492011 | Msa0899420:intron | 15.0% |
| !! | AGAATTATATACAAAAAGTA+TGG | - | chr6_1:94492832-94492851 | Msa0899420:intron | 15.0% |
| !! | ATTCTTAAATATAGATGTAA+AGG | - | chr6_1:94493605-94493624 | Msa0899420:intron | 15.0% |
| !! | GATTTATAAACTTAAAACTA+AGG | + | chr6_1:94494587-94494606 | None:intergenic | 15.0% |
| !!! | ATGTGTATTTTGATATAATA+TGG | - | chr6_1:94494739-94494758 | Msa0899420:CDS | 15.0% |
| !!! | TTCTTTTGGTAATTTGATAA+TGG | - | chr6_1:94490622-94490641 | Msa0899420:intron | 20.0% |
| !! | TTAGAATTAAGAAAAAATGG+GGG | - | chr6_1:94490803-94490822 | Msa0899420:intron | 20.0% |
| !!! | TTTTATTAATATGGTTGAGT+TGG | - | chr6_1:94490909-94490928 | Msa0899420:intron | 20.0% |
| !! | ACAATATCAAAAAATTATGG+TGG | + | chr6_1:94491378-94491397 | None:intergenic | 20.0% |
| !! | AGTAATATTCATTATTCTTG+CGG | + | chr6_1:94491728-94491747 | None:intergenic | 20.0% |
| !! | TAAGCATGAAACAAATTATT+GGG | + | chr6_1:94491893-94491912 | None:intergenic | 20.0% |
| !! | ATAAGCATGAAACAAATTAT+TGG | + | chr6_1:94491894-94491913 | None:intergenic | 20.0% |
| !! | GGTAAAACTTATATCAAAAT+AGG | + | chr6_1:94491934-94491953 | None:intergenic | 20.0% |
| !!! | CTGTATTTTATCTTTAGAAA+GGG | + | chr6_1:94492718-94492737 | None:intergenic | 20.0% |
| !!! | ACTGTATTTTATCTTTAGAA+AGG | + | chr6_1:94492719-94492738 | None:intergenic | 20.0% |
| !!! | TTTCTAAAGATAAAATACAG+TGG | - | chr6_1:94492718-94492737 | Msa0899420:intron | 20.0% |
| !! | TATTACCTTGTAATTTATCT+TGG | + | chr6_1:94492747-94492766 | None:intergenic | 20.0% |
| !! | AAATATAGATGTAAAGGTTT+CGG | - | chr6_1:94493611-94493630 | Msa0899420:intron | 20.0% |
| !! | TAAGATTGTAGTTAATTGAT+TGG | - | chr6_1:94493984-94494003 | Msa0899420:intron | 20.0% |
| !! | TAGGTATCAAATAGATAAAA+AGG | + | chr6_1:94494153-94494172 | None:intergenic | 20.0% |
| !! | ACAAAACATTTCAGTTATAT+AGG | + | chr6_1:94494172-94494191 | None:intergenic | 20.0% |
| !! | TCATAACTTAAAAACAATCA+TGG | + | chr6_1:94494556-94494575 | None:intergenic | 20.0% |
| !! | GCTTAAAAACTTAAAAGTAA+GGG | + | chr6_1:94494711-94494730 | None:intergenic | 20.0% |
| !! | AGCTTAAAAACTTAAAAGTA+AGG | + | chr6_1:94494712-94494731 | None:intergenic | 20.0% |
| ! | GTGAATAAGAATCGAAATTA+GGG | + | chr6_1:94489985-94490004 | None:intergenic | 25.0% |
| ! | TGTGAATAAGAATCGAAATT+AGG | + | chr6_1:94489986-94490005 | None:intergenic | 25.0% |
| !!! | AATAAGAGTTTTTTTGAGAG+GGG | + | chr6_1:94490009-94490028 | None:intergenic | 25.0% |
| !!! | GAATAAGAGTTTTTTTGAGA+GGG | + | chr6_1:94490010-94490029 | None:intergenic | 25.0% |
| !!! | TGAATAAGAGTTTTTTTGAG+AGG | + | chr6_1:94490011-94490030 | None:intergenic | 25.0% |
| ! | ATTAAACTGTTCATCCAAAT+AGG | + | chr6_1:94491514-94491533 | None:intergenic | 25.0% |
| ! | TTTGGATGAACAGTTTAATT+AGG | - | chr6_1:94491515-94491534 | Msa0899420:intron | 25.0% |
| ! | TTAATTAGGCAGTTATAACT+AGG | - | chr6_1:94491529-94491548 | Msa0899420:intron | 25.0% |
| ! | TAATTAGGCAGTTATAACTA+GGG | - | chr6_1:94491530-94491549 | Msa0899420:intron | 25.0% |
| ! | TATTCTTGAGCTATGTAATT+GGG | + | chr6_1:94491765-94491784 | None:intergenic | 25.0% |
| ! | TTATTCTTGAGCTATGTAAT+TGG | + | chr6_1:94491766-94491785 | None:intergenic | 25.0% |
| ! | TGAAAATGAATTGAAAGAGA+TGG | + | chr6_1:94491846-94491865 | None:intergenic | 25.0% |
| ! | AAGTGTATGTGTTATAACTA+GGG | + | chr6_1:94492218-94492237 | None:intergenic | 25.0% |
| ! | TAAGTGTATGTGTTATAACT+AGG | + | chr6_1:94492219-94492238 | None:intergenic | 25.0% |
| ! | TAGAGTTAAAATTACAAGCT+GGG | - | chr6_1:94492477-94492496 | Msa0899420:intron | 25.0% |
| ! | AAATACAAACTCCACAATTT+AGG | - | chr6_1:94492501-94492520 | Msa0899420:intron | 25.0% |
| ! | TTTGTTACAAAAAGCTAGTT+TGG | + | chr6_1:94492592-94492611 | None:intergenic | 25.0% |
| ! | TAAAATTCTAGATTGTGACA+TGG | - | chr6_1:94492657-94492676 | Msa0899420:intron | 25.0% |
| ! | TACAAACAAAAATCATGGAA+AGG | + | chr6_1:94492917-94492936 | None:intergenic | 25.0% |
| ! | GTGATTACAAACAAAAATCA+TGG | + | chr6_1:94492922-94492941 | None:intergenic | 25.0% |
| !!! | CTATTTTGAATGAGTAATTC+AGG | + | chr6_1:94493180-94493199 | None:intergenic | 25.0% |
| !!! | GTTTAATTGCTCCATTTTTT+CGG | - | chr6_1:94493420-94493439 | Msa0899420:intron | 25.0% |
| ! | AACCAACACATAATAAGAAT+GGG | + | chr6_1:94493504-94493523 | None:intergenic | 25.0% |
| ! | TGTAGTTAATTGATTGGAAT+TGG | - | chr6_1:94493990-94494009 | Msa0899420:intron | 25.0% |
| !! | AAACTTTTTGTAGGGAATTA+GGG | + | chr6_1:94494426-94494445 | None:intergenic | 25.0% |
| !! | TACACTTCAAACTTTTTGTA+GGG | + | chr6_1:94494434-94494453 | None:intergenic | 25.0% |
| !! | ATACACTTCAAACTTTTTGT+AGG | + | chr6_1:94494435-94494454 | None:intergenic | 25.0% |
| !! | ACAAAAAGTTTGAAGTGTAT+AGG | - | chr6_1:94494435-94494454 | Msa0899420:CDS | 25.0% |
| !!! | CATGATTGCTTTTAAGTTAT+GGG | - | chr6_1:94494607-94494626 | Msa0899420:CDS | 25.0% |
| TGCGATTCTATTTAACGAAA+GGG | + | chr6_1:94489833-94489852 | None:intergenic | 30.0% | |
| ATGCGATTCTATTTAACGAA+AGG | + | chr6_1:94489834-94489853 | None:intergenic | 30.0% | |
| AAGAATCGAAATTAGGGTTA+GGG | + | chr6_1:94489979-94489998 | None:intergenic | 30.0% | |
| TAAGAATCGAAATTAGGGTT+AGG | + | chr6_1:94489980-94489999 | None:intergenic | 30.0% | |
| GTCAAAAACAATAACTCCTT+TGG | + | chr6_1:94490470-94490489 | None:intergenic | 30.0% | |
| CGAAGTTTGATGGAAAATTA+GGG | - | chr6_1:94490497-94490516 | Msa0899420:intron | 30.0% | |
| TTTGATTCATTCCTCTAACT+TGG | - | chr6_1:94490676-94490695 | Msa0899420:intron | 30.0% | |
| AACATTGAATTCCAAGTTAG+AGG | + | chr6_1:94490690-94490709 | None:intergenic | 30.0% | |
| GGTAAGCATATGAAAACATT+TGG | - | chr6_1:94490824-94490843 | Msa0899420:intron | 30.0% | |
| ! | TGCATACATATGATTTGTAG+AGG | - | chr6_1:94490857-94490876 | Msa0899420:intron | 30.0% |
| ! | CCATATTAATAAAAGAGCAC+CGG | + | chr6_1:94490903-94490922 | None:intergenic | 30.0% |
| TTATCAGTTATCACACTAAG+CGG | + | chr6_1:94491234-94491253 | None:intergenic | 30.0% | |
| CTTAGTGTGATAACTGATAA+GGG | - | chr6_1:94491234-94491253 | Msa0899420:intron | 30.0% | |
| CATAACATATGTTAGCAGAA+TGG | + | chr6_1:94491319-94491338 | None:intergenic | 30.0% | |
| !! | TGTCAAAGTTCCAGTTTTAA+GGG | - | chr6_1:94491440-94491459 | Msa0899420:intron | 30.0% |
| TTCAAAACAGAGATCCTATT+TGG | - | chr6_1:94491497-94491516 | Msa0899420:intron | 30.0% | |
| AATTAGGCAGTTATAACTAG+GGG | - | chr6_1:94491531-94491550 | Msa0899420:intron | 30.0% | |
| !! | TGATTTGCGGTTTTTCTATT+GGG | + | chr6_1:94491575-94491594 | None:intergenic | 30.0% |
| !!! | TTGATTTGCGGTTTTTCTAT+TGG | + | chr6_1:94491576-94491595 | None:intergenic | 30.0% |
| TATTCATTATTCTTGCGGTT+TGG | + | chr6_1:94491723-94491742 | None:intergenic | 30.0% | |
| AGAATTATAATCGAACCTGA+TGG | + | chr6_1:94491820-94491839 | None:intergenic | 30.0% | |
| AGTGTATGTGTTATAACTAG+GGG | + | chr6_1:94492217-94492236 | None:intergenic | 30.0% | |
| !! | CTTATTTCTATAAGCTTCTG+AGG | + | chr6_1:94492336-94492355 | None:intergenic | 30.0% |
| AGACTATTTAGGAAAGCTTA+TGG | + | chr6_1:94492389-94492408 | None:intergenic | 30.0% | |
| AAGTCAAATAGGTCAAGAAA+AGG | - | chr6_1:94492432-94492451 | Msa0899420:intron | 30.0% | |
| CTAGAGTTAAAATTACAAGC+TGG | - | chr6_1:94492476-94492495 | Msa0899420:intron | 30.0% | |
| AGGACAATTAACCTAAATTG+TGG | + | chr6_1:94492515-94492534 | None:intergenic | 30.0% | |
| GATCATCATGTAGATAGTAT+GGG | + | chr6_1:94492565-94492584 | None:intergenic | 30.0% | |
| AGTCAGTAGATAATAGTTCA+TGG | - | chr6_1:94492806-94492825 | Msa0899420:intron | 30.0% | |
| AACTGTGTAAAGCATAACTA+TGG | - | chr6_1:94493017-94493036 | Msa0899420:intron | 30.0% | |
| TAACTGAAGAAAACGATAGT+TGG | - | chr6_1:94493134-94493153 | Msa0899420:intron | 30.0% | |
| AACTGAAGAAAACGATAGTT+GGG | - | chr6_1:94493135-94493154 | Msa0899420:intron | 30.0% | |
| ATATATGATTAAGAGACTCC+CGG | + | chr6_1:94493399-94493418 | None:intergenic | 30.0% | |
| ACCAACACATAATAAGAATG+GGG | + | chr6_1:94493503-94493522 | None:intergenic | 30.0% | |
| CAACCAACACATAATAAGAA+TGG | + | chr6_1:94493505-94493524 | None:intergenic | 30.0% | |
| TTTCTCAAAAAGACTTCGAT+TGG | - | chr6_1:94493543-94493562 | Msa0899420:intron | 30.0% | |
| TTCTCAAAAAGACTTCGATT+GGG | - | chr6_1:94493544-94493563 | Msa0899420:intron | 30.0% | |
| !!! | GTGGAACACTCTAAAATTTT+AGG | - | chr6_1:94493575-94493594 | Msa0899420:intron | 30.0% |
| TCGGTTATCTAATAAATCAG+TGG | - | chr6_1:94493630-94493649 | Msa0899420:intron | 30.0% | |
| ! | CAATTCTTGATAGCTTCAAT+TGG | - | chr6_1:94494018-94494037 | Msa0899420:intron | 30.0% |
| !! | AACAAAAGCACCAAGTATTA+TGG | + | chr6_1:94494050-94494069 | None:intergenic | 30.0% |
| !! | AAATGTTTTGTTCTGAATCC+AGG | - | chr6_1:94494181-94494200 | Msa0899420:intron | 30.0% |
| ! | CAAACTTTTTGTAGGGAATT+AGG | + | chr6_1:94494427-94494446 | None:intergenic | 30.0% |
| CAAGAATTGCAAATGCATAT+AGG | + | chr6_1:94494512-94494531 | None:intergenic | 30.0% | |
| CCATAACTTAAAAGCAATCA+TGG | + | chr6_1:94494609-94494628 | None:intergenic | 30.0% | |
| !!! | CCATGATTGCTTTTAAGTTA+TGG | - | chr6_1:94494606-94494625 | Msa0899420:CDS | 30.0% |
| CTGAAGCAAATGTACAAAAA+TGG | + | chr6_1:94494780-94494799 | None:intergenic | 30.0% | |
| !!! | GTTGTTGATGGTGTTGTTTT+TGG | + | chr6_1:94489903-94489922 | None:intergenic | 35.0% |
| AAATTAGGGTTAGGGTTTGA+GGG | + | chr6_1:94489971-94489990 | None:intergenic | 35.0% | |
| ! | AATTTTCTTCCTCTACCCAT+CGG | - | chr6_1:94490147-94490166 | Msa0899420:intron | 35.0% |
| ! | GGTTTGCTTTGATTGAGATA+TGG | + | chr6_1:94490207-94490226 | None:intergenic | 35.0% |
| ! | ATAAGTCGAGAATTGGTTTC+GGG | + | chr6_1:94490228-94490247 | None:intergenic | 35.0% |
| ! | GATAAGTCGAGAATTGGTTT+CGG | + | chr6_1:94490229-94490248 | None:intergenic | 35.0% |
| GAGAAAGATAAGTCGAGAAT+TGG | + | chr6_1:94490235-94490254 | None:intergenic | 35.0% | |
| AAACAATAACTCCTTTGGCA+AGG | + | chr6_1:94490465-94490484 | None:intergenic | 35.0% | |
| GCGAAGTTTGATGGAAAATT+AGG | - | chr6_1:94490496-94490515 | Msa0899420:intron | 35.0% | |
| ATTAGGGTTTCTTCCTTTGA+AGG | - | chr6_1:94490513-94490532 | Msa0899420:intron | 35.0% | |
| CATAGCAACAATACCTTCAA+AGG | + | chr6_1:94490529-94490548 | None:intergenic | 35.0% | |
| ! | CCGGTGCTCTTTTATTAATA+TGG | - | chr6_1:94490900-94490919 | Msa0899420:intron | 35.0% |
| !! | ATATGGTTGAGTTGGATATG+TGG | - | chr6_1:94490917-94490936 | Msa0899420:intron | 35.0% |
| GAGAAATGACGATATTAGAG+AGG | - | chr6_1:94490961-94490980 | Msa0899420:intron | 35.0% | |
| AAACTAGGTTTCAGTGGTTT+GGG | - | chr6_1:94491006-94491025 | Msa0899420:intron | 35.0% | |
| ! | GATCGGTAGATTTTGTAGTA+AGG | - | chr6_1:94491042-94491061 | Msa0899420:intron | 35.0% |
| TAAGGAGTGACTTTGTAGTA+AGG | - | chr6_1:94491060-94491079 | Msa0899420:intron | 35.0% | |
| GAAGACCTAGAAAAACTCTA+GGG | - | chr6_1:94491118-94491137 | Msa0899420:intron | 35.0% | |
| ! | ATAGTCCCTAGAGTTTTTCT+AGG | + | chr6_1:94491126-94491145 | None:intergenic | 35.0% |
| !! | GGTTCTAGAGAATAATGAGT+TGG | - | chr6_1:94491152-94491171 | Msa0899420:intron | 35.0% |
| GCTTAGTGTGATAACTGATA+AGG | - | chr6_1:94491233-94491252 | Msa0899420:intron | 35.0% | |
| ! | AAATGTAACTTGCACCAACT+AGG | - | chr6_1:94491272-94491291 | Msa0899420:intron | 35.0% |
| CATCTATGGTAAATCCTAGT+TGG | + | chr6_1:94491289-94491308 | None:intergenic | 35.0% | |
| CAACTAGGATTTACCATAGA+TGG | - | chr6_1:94491287-94491306 | Msa0899420:intron | 35.0% | |
| AGAATGGCAAAAACCATCTA+TGG | + | chr6_1:94491303-94491322 | None:intergenic | 35.0% | |
| !! | TGTTTAGTGCACTGTTTTAG+TGG | - | chr6_1:94491395-94491414 | Msa0899420:intron | 35.0% |
| AACTTTGACACACCTTATCA+AGG | + | chr6_1:94491430-94491449 | None:intergenic | 35.0% | |
| ! | GTGTCAAAGTTCCAGTTTTA+AGG | - | chr6_1:94491439-94491458 | Msa0899420:intron | 35.0% |
| !!! | GTTTTTCTATTGGGTTGGTT+CGG | + | chr6_1:94491566-94491585 | None:intergenic | 35.0% |
| !! | GTTTGGATTGGTTTGATTTG+CGG | + | chr6_1:94491588-94491607 | None:intergenic | 35.0% |
| !! | ATTATTCTTGCGGTTTGGTT+TGG | + | chr6_1:94491718-94491737 | None:intergenic | 35.0% |
| !! | TTGGTTTGGTTTGGTTTGAA+TGG | - | chr6_1:94492091-94492110 | Msa0899420:intron | 35.0% |
| ! | AGATAAAAAAGCATGCGGTT+TGG | + | chr6_1:94492142-94492161 | None:intergenic | 35.0% |
| AAGCACATGTGAGACTATTT+AGG | + | chr6_1:94492400-94492419 | None:intergenic | 35.0% | |
| TGTCCATCGTTAAGTCAAAT+AGG | - | chr6_1:94492421-94492440 | Msa0899420:intron | 35.0% | |
| ! | TGACCTATTTGACTTAACGA+TGG | + | chr6_1:94492427-94492446 | None:intergenic | 35.0% |
| !! | CTGTTTCTACAAGTACTTAG+AGG | + | chr6_1:94492535-94492554 | None:intergenic | 35.0% |
| GGATCATCATGTAGATAGTA+TGG | + | chr6_1:94492566-94492585 | None:intergenic | 35.0% | |
| ! | TACAAAAAGCTAGTTTGGTC+TGG | + | chr6_1:94492587-94492606 | None:intergenic | 35.0% |
| GTCACATACTCAAAAGAAGA+AGG | - | chr6_1:94492684-94492703 | Msa0899420:intron | 35.0% | |
| GGAGTCCAAGATAAATTACA+AGG | - | chr6_1:94492739-94492758 | Msa0899420:intron | 35.0% | |
| !! | TTTTAGGTCTTCATACTCTC+AGG | + | chr6_1:94492886-94492905 | None:intergenic | 35.0% |
| AGAAACTATGTAACGAACCA+GGG | - | chr6_1:94492982-94493001 | Msa0899420:intron | 35.0% | |
| TCAATTACCGAAGAAAGACT+TGG | - | chr6_1:94493072-94493091 | Msa0899420:intron | 35.0% | |
| ACTTCTACCAAGTCTTTCTT+CGG | + | chr6_1:94493082-94493101 | None:intergenic | 35.0% | |
| ACTTGGTAGAAGTTTGTCAT+GGG | - | chr6_1:94493089-94493108 | Msa0899420:intron | 35.0% | |
| !! | TTTGTCATGGGGTAGTTTTA+GGG | - | chr6_1:94493101-94493120 | Msa0899420:intron | 35.0% |
| TATGCTTCCATTGAAGATGA+AGG | - | chr6_1:94493264-94493283 | Msa0899420:intron | 35.0% | |
| ACTAGAACCTTCATCTTCAA+TGG | + | chr6_1:94493274-94493293 | None:intergenic | 35.0% | |
| TCTAAATGAACTCTCGACTA+AGG | - | chr6_1:94493306-94493325 | Msa0899420:intron | 35.0% | |
| AAGGATAATCTCTTGAGAAG+AGG | - | chr6_1:94493325-94493344 | Msa0899420:intron | 35.0% | |
| AGGATAATCTCTTGAGAAGA+GGG | - | chr6_1:94493326-94493345 | Msa0899420:intron | 35.0% | |
| CTCATCATCTTCTTTCGTAT+AGG | - | chr6_1:94493360-94493379 | Msa0899420:intron | 35.0% | |
| ATCATCTTCTTTCGTATAGG+TGG | - | chr6_1:94493363-94493382 | Msa0899420:intron | 35.0% | |
| !!! | TAATTGCTCCATTTTTTCGG+TGG | - | chr6_1:94493423-94493442 | Msa0899420:intron | 35.0% |
| GGGTTCAATCGTACTTAAAA+TGG | - | chr6_1:94493449-94493468 | Msa0899420:intron | 35.0% | |
| CAATCGTACTTAAAATGGCT+CGG | - | chr6_1:94493454-94493473 | Msa0899420:intron | 35.0% | |
| ATAAGAATGGGGCAATTTGA+AGG | + | chr6_1:94493492-94493511 | None:intergenic | 35.0% | |
| TTTACTGTGTTTGTCTGTCT+TGG | - | chr6_1:94493715-94493734 | Msa0899420:intron | 35.0% | |
| TTACTGTGTTTGTCTGTCTT+GGG | - | chr6_1:94493716-94493735 | Msa0899420:intron | 35.0% | |
| !!! | ACATCGTCTAGTTTTCTTGT+CGG | - | chr6_1:94493886-94493905 | Msa0899420:intron | 35.0% |
| TTTCTGATGCAGATTTGTCT+CGG | - | chr6_1:94493921-94493940 | Msa0899420:intron | 35.0% | |
| TAGCAGATTGATCCTTTGTT+TGG | - | chr6_1:94493957-94493976 | Msa0899420:intron | 35.0% | |
| ! | AGCAGATTGATCCTTTGTTT+GGG | - | chr6_1:94493958-94493977 | Msa0899420:intron | 35.0% |
| ! | TTGGTGCTTTCCATAATACT+TGG | - | chr6_1:94494037-94494056 | Msa0899420:intron | 35.0% |
| GAAACTAAAAATCTCACCTC+AGG | + | chr6_1:94494272-94494291 | None:intergenic | 35.0% | |
| ATGCATATAGGCATAAGGTA+AGG | + | chr6_1:94494500-94494519 | None:intergenic | 35.0% | |
| TGCAAATGCATATAGGCATA+AGG | + | chr6_1:94494505-94494524 | None:intergenic | 35.0% | |
| TAATATCAGCTCTATCGAGA+TGG | - | chr6_1:94494829-94494848 | Msa0899420:CDS | 35.0% | |
| AATATCAGCTCTATCGAGAT+GGG | - | chr6_1:94494830-94494849 | Msa0899420:CDS | 35.0% | |
| TAATATCAGTGCTATCGAGA+TGG | - | chr6_1:94494874-94494893 | Msa0899420:exon | 35.0% | |
| AATATCAGTGCTATCGAGAT+GGG | - | chr6_1:94494875-94494894 | Msa0899420:exon | 35.0% | |
| TAATATCAGCGCTATCAAGA+TGG | - | chr6_1:94494919-94494938 | Msa0899420:five_prime_UTR | 35.0% | |
| AATATCAGCGCTATCAAGAT+GGG | - | chr6_1:94494920-94494939 | Msa0899420:five_prime_UTR | 35.0% | |
| TATCAAGATGGGAGATATGA+TGG | - | chr6_1:94494931-94494950 | Msa0899420:five_prime_UTR | 35.0% | |
| !!! | GTTGATGGTGTTGTTTTTGG+TGG | + | chr6_1:94489900-94489919 | None:intergenic | 40.0% |
| ACCATCAACAACATGACAAC+AGG | - | chr6_1:94489911-94489930 | Msa0899420:CDS | 40.0% | |
| TCCTGTTGTCATGTTGTTGA+TGG | + | chr6_1:94489915-94489934 | None:intergenic | 40.0% | |
| ATCAACAACATGACAACAGG+AGG | - | chr6_1:94489914-94489933 | Msa0899420:CDS | 40.0% | |
| TCAACAACATGACAACAGGA+GGG | - | chr6_1:94489915-94489934 | Msa0899420:CDS | 40.0% | |
| GAAATTAGGGTTAGGGTTTG+AGG | + | chr6_1:94489972-94489991 | None:intergenic | 40.0% | |
| !!! | AATGACGACGTTTTGAGGAA+GGG | + | chr6_1:94490038-94490057 | None:intergenic | 40.0% |
| TGGGTAGAGGAAGAAAATTG+CGG | + | chr6_1:94490146-94490165 | None:intergenic | 40.0% | |
| TCTCCCTGAAACTCAAAGTT+CGG | - | chr6_1:94490251-94490270 | Msa0899420:intron | 40.0% | |
| ! | GTTCCGAACTTTGAGTTTCA+GGG | + | chr6_1:94490257-94490276 | None:intergenic | 40.0% |
| ! | TGTTCCGAACTTTGAGTTTC+AGG | + | chr6_1:94490258-94490277 | None:intergenic | 40.0% |
| TCGGAACAGAGATTTCTTCT+CGG | - | chr6_1:94490270-94490289 | Msa0899420:intron | 40.0% | |
| ! | GATTCGATTGATGTTAGCCT+CGG | - | chr6_1:94490301-94490320 | Msa0899420:intron | 40.0% |
| ! | ATTCGATTGATGTTAGCCTC+GGG | - | chr6_1:94490302-94490321 | Msa0899420:intron | 40.0% |
| TGTGTGTTTCGTGGATAAAC+CGG | - | chr6_1:94490881-94490900 | Msa0899420:intron | 40.0% | |
| ACGATATTAGAGAGGCAGTT+GGG | - | chr6_1:94490969-94490988 | Msa0899420:intron | 40.0% | |
| GAAACTAGGTTTCAGTGGTT+TGG | - | chr6_1:94491005-94491024 | Msa0899420:intron | 40.0% | |
| GACTTTGTAGTAAGGAGTGA+CGG | - | chr6_1:94491068-94491087 | Msa0899420:intron | 40.0% | |
| GATAGTCAAATCGCTAGAGA+CGG | - | chr6_1:94491093-94491112 | Msa0899420:intron | 40.0% | |
| GGAAGACCTAGAAAAACTCT+AGG | - | chr6_1:94491117-94491136 | Msa0899420:intron | 40.0% | |
| ! | AACTCTAGGGACTATCAAGA+AGG | - | chr6_1:94491131-94491150 | Msa0899420:intron | 40.0% |
| TCGGCTACAGAATCAAACAA+CGG | + | chr6_1:94491209-94491228 | None:intergenic | 40.0% | |
| GTTATCACACTAAGCGGAAT+CGG | + | chr6_1:94491228-94491247 | None:intergenic | 40.0% | |
| GTGTGATAACTGATAAGGGT+TGG | - | chr6_1:94491238-94491257 | Msa0899420:intron | 40.0% | |
| !! | GATAAGGGTTGGTTGTTGTT+TGG | - | chr6_1:94491249-94491268 | Msa0899420:intron | 40.0% |
| CTTTGCATGTCCCTTAAAAC+TGG | + | chr6_1:94491453-94491472 | None:intergenic | 40.0% | |
| !!! | CAGTTTTAAGGGACATGCAA+AGG | - | chr6_1:94491451-94491470 | Msa0899420:intron | 40.0% |
| ! | TTGCGGTTTTTCTATTGGGT+TGG | + | chr6_1:94491571-94491590 | None:intergenic | 40.0% |
| !! | TTTGCGATTTCGGTTTGGAT+TGG | + | chr6_1:94491600-94491619 | None:intergenic | 40.0% |
| !!! | GGTTTTTTGCGATTTCGGTT+TGG | + | chr6_1:94491605-94491624 | None:intergenic | 40.0% |
| !!! | AGTGCGGTTTTTTGCGATTT+CGG | + | chr6_1:94491610-94491629 | None:intergenic | 40.0% |
| AAATCGCAAAAAACCGCACT+TGG | - | chr6_1:94491610-94491629 | Msa0899420:intron | 40.0% | |
| CAAACCAAACCAAACCAATG+CGG | + | chr6_1:94492084-94492103 | None:intergenic | 40.0% | |
| !! | AAAAAGCATGCGGTTTGGTT+TGG | + | chr6_1:94492137-94492156 | None:intergenic | 40.0% |
| !!! | ATGCTTTTTTATCTCGCGGT+TGG | - | chr6_1:94492148-94492167 | Msa0899420:intron | 40.0% |
| !!! | TGGAAAGGCTATGCTGTTTT+AGG | + | chr6_1:94492902-94492921 | None:intergenic | 40.0% |
| CAGAAACTATGTAACGAACC+AGG | - | chr6_1:94492981-94493000 | Msa0899420:intron | 40.0% | |
| ! | GACTTGGTAGAAGTTTGTCA+TGG | - | chr6_1:94493088-94493107 | Msa0899420:intron | 40.0% |
| CTTGGTAGAAGTTTGTCATG+GGG | - | chr6_1:94493090-94493109 | Msa0899420:intron | 40.0% | |
| ! | GTTTGTCATGGGGTAGTTTT+AGG | - | chr6_1:94493100-94493119 | Msa0899420:intron | 40.0% |
| GAAAACGATAGTTGGGTTTG+AGG | - | chr6_1:94493142-94493161 | Msa0899420:intron | 40.0% | |
| TAGTTGGGTTTGAGGAAGTA+AGG | - | chr6_1:94493150-94493169 | Msa0899420:intron | 40.0% | |
| AGTTGGGTTTGAGGAAGTAA+GGG | - | chr6_1:94493151-94493170 | Msa0899420:intron | 40.0% | |
| ! | TGAAGATGAAGGTTCTAGTG+TGG | - | chr6_1:94493275-94493294 | Msa0899420:intron | 40.0% |
| GGATAATCTCTTGAGAAGAG+GGG | - | chr6_1:94493327-94493346 | Msa0899420:intron | 40.0% | |
| TTCTTTCGTATAGGTGGTTG+AGG | - | chr6_1:94493369-94493388 | Msa0899420:intron | 40.0% | |
| TATAGGTGGTTGAGGTAATC+CGG | - | chr6_1:94493377-94493396 | Msa0899420:intron | 40.0% | |
| GCCCCATTCTTATTATGTGT+TGG | - | chr6_1:94493499-94493518 | Msa0899420:intron | 40.0% | |
| AAAAGACTTCGATTGGGAGA+AGG | - | chr6_1:94493550-94493569 | Msa0899420:intron | 40.0% | |
| GTGAATCCTTTGTCTTGTCA+GGG | - | chr6_1:94493656-94493675 | Msa0899420:intron | 40.0% | |
| !!! | GTTCTGTTTCTGTGCAGTTT+TGG | - | chr6_1:94493748-94493767 | Msa0899420:intron | 40.0% |
| TGTGCTTCTTCATGTAGTTC+CGG | - | chr6_1:94493781-94493800 | Msa0899420:intron | 40.0% | |
| GGGAATTAGGGATCAAAGTA+CGG | + | chr6_1:94494414-94494433 | None:intergenic | 40.0% | |
| TGTACATTTGCTTCAGTCAC+TGG | - | chr6_1:94494784-94494803 | Msa0899420:CDS | 40.0% | |
| GTACATTTGCTTCAGTCACT+GGG | - | chr6_1:94494785-94494804 | Msa0899420:CDS | 40.0% | |
| TATCGAGATGGGAGATATGA+TGG | - | chr6_1:94494841-94494860 | Msa0899420:CDS | 40.0% | |
| !! | AGATGGGAGATATGATGGAT+CGG | - | chr6_1:94494846-94494865 | Msa0899420:CDS | 40.0% |
| TATCGAGATGGGAGATATGA+TGG | - | chr6_1:94494841-94494860 | Msa0899420:CDS | 40.0% | |
| !!! | ATGACGACGTTTTGAGGAAG+GGG | + | chr6_1:94490037-94490056 | None:intergenic | 45.0% |
| !!! | CAATGACGACGTTTTGAGGA+AGG | + | chr6_1:94490039-94490058 | None:intergenic | 45.0% |
| CTTCCTCAAAACGTCGTCAT+TGG | - | chr6_1:94490037-94490056 | Msa0899420:intron | 45.0% | |
| CTGTGATAAGGTAGTTACGG+CGG | + | chr6_1:94490099-94490118 | None:intergenic | 45.0% | |
| CGGCTGTGATAAGGTAGTTA+CGG | + | chr6_1:94490102-94490121 | None:intergenic | 45.0% | |
| ATTCGAGCTAGGTGAAGTTC+CGG | + | chr6_1:94490175-94490194 | None:intergenic | 45.0% | |
| CTCATTGAAGACCTTGCCAA+AGG | - | chr6_1:94490451-94490470 | Msa0899420:intron | 45.0% | |
| GACACTGTTGCGAAGTTTGA+TGG | - | chr6_1:94490487-94490506 | Msa0899420:intron | 45.0% | |
| TGTAGAGGTTGTGTGTTTCG+TGG | - | chr6_1:94490872-94490891 | Msa0899420:intron | 45.0% | |
| GACGATATTAGAGAGGCAGT+TGG | - | chr6_1:94490968-94490987 | Msa0899420:intron | 45.0% | |
| CGATATTAGAGAGGCAGTTG+GGG | - | chr6_1:94490970-94490989 | Msa0899420:intron | 45.0% | |
| ! | GGTAGCATTGGGTAGAAACT+AGG | - | chr6_1:94490991-94491010 | Msa0899420:intron | 45.0% |
| GGGTAGAAACTAGGTTTCAG+TGG | - | chr6_1:94491000-94491019 | Msa0899420:intron | 45.0% | |
| TGGTTTCCCTTGCCTTGATA+AGG | - | chr6_1:94491415-94491434 | Msa0899420:intron | 45.0% | |
| GACACACCTTATCAAGGCAA+GGG | + | chr6_1:94491424-94491443 | None:intergenic | 45.0% | |
| TGACACACCTTATCAAGGCA+AGG | + | chr6_1:94491425-94491444 | None:intergenic | 45.0% | |
| GCAAAAAACCGCACTTGGTT+CGG | - | chr6_1:94491615-94491634 | Msa0899420:intron | 45.0% | |
| GAATTCATCCGAACCAAGTG+CGG | + | chr6_1:94491626-94491645 | None:intergenic | 45.0% | |
| !! | GCACTTGGTTCGGATGAATT+CGG | - | chr6_1:94491625-94491644 | Msa0899420:intron | 45.0% |
| !! | TCTTGCGGTTTGGTTTGGTT+TGG | + | chr6_1:94491713-94491732 | None:intergenic | 45.0% |
| ! | TTTTCCATCGTTGCACCATC+AGG | - | chr6_1:94491802-94491821 | Msa0899420:intron | 45.0% |
| !! | TTGGATTGGTTCGGTTTGTG+CGG | + | chr6_1:94492060-94492079 | None:intergenic | 45.0% |
| !! | CAATGCGGTTTGGATTGGTT+CGG | + | chr6_1:94492069-94492088 | None:intergenic | 45.0% |
| ! | CAAACCAATGCGGTTTGGAT+TGG | + | chr6_1:94492074-94492093 | None:intergenic | 45.0% |
| !! | CAATCCAAACCGCATTGGTT+TGG | - | chr6_1:94492072-94492091 | Msa0899420:intron | 45.0% |
| CAAACCAAACCAATGCGGTT+TGG | + | chr6_1:94492079-94492098 | None:intergenic | 45.0% | |
| !! | CAAACCGCATTGGTTTGGTT+TGG | - | chr6_1:94492077-94492096 | Msa0899420:intron | 45.0% |
| !! | CGCATTGGTTTGGTTTGGTT+TGG | - | chr6_1:94492082-94492101 | Msa0899420:intron | 45.0% |
| ! | CCGCGAGATAAAAAAGCATG+CGG | + | chr6_1:94492147-94492166 | None:intergenic | 45.0% |
| !!! | CCGCATGCTTTTTTATCTCG+CGG | - | chr6_1:94492144-94492163 | Msa0899420:intron | 45.0% |
| !! | GTTATAACTAGGGGTGTTCG+CGG | + | chr6_1:94492208-94492227 | None:intergenic | 45.0% |
| TATGTAACGAACCAGGGCAA+AGG | - | chr6_1:94492988-94493007 | Msa0899420:intron | 45.0% | |
| TACTCTGTGCTGAGTAAGGA+TGG | - | chr6_1:94493202-94493221 | Msa0899420:intron | 45.0% | |
| ! | TGGATTGGGCTTCGGAAATT+TGG | - | chr6_1:94493236-94493255 | Msa0899420:intron | 45.0% |
| ATAGGTGGTTGAGGTAATCC+GGG | - | chr6_1:94493378-94493397 | Msa0899420:intron | 45.0% | |
| !!! | CTCCATTTTTTCGGTGGTGT+GGG | - | chr6_1:94493429-94493448 | Msa0899420:intron | 45.0% |
| AACCCACACCACCGAAAAAA+TGG | + | chr6_1:94493434-94493453 | None:intergenic | 45.0% | |
| CGTGAATCCTTTGTCTTGTC+AGG | - | chr6_1:94493655-94493674 | Msa0899420:intron | 45.0% | |
| AATCCTTTGTCTTGTCAGGG+AGG | - | chr6_1:94493659-94493678 | Msa0899420:intron | 45.0% | |
| ACTCTGCAAAACCTACACAC+TGG | + | chr6_1:94493690-94493709 | None:intergenic | 45.0% | |
| ! | AGTGTGTAGGTTTTGCAGAG+TGG | - | chr6_1:94493689-94493708 | Msa0899420:intron | 45.0% |
| GTGCTTCTTCATGTAGTTCC+GGG | - | chr6_1:94493782-94493801 | Msa0899420:intron | 45.0% | |
| TTGAGTCGGACTGCTTCTAA+TGG | - | chr6_1:94493805-94493824 | Msa0899420:intron | 45.0% | |
| CTAGACGATGTAGCACATCA+AGG | + | chr6_1:94493877-94493896 | None:intergenic | 45.0% | |
| CAATCTTAGCGCCCAAACAA+AGG | + | chr6_1:94493972-94493991 | None:intergenic | 45.0% | |
| ! | TCACCTCAGGATAGCAGTTT+TGG | + | chr6_1:94494259-94494278 | None:intergenic | 45.0% |
| TCAGTCACTGGGAGATATGA+TGG | - | chr6_1:94494796-94494815 | Msa0899420:CDS | 45.0% | |
| !! | CACTGGGAGATATGATGGAT+CGG | - | chr6_1:94494801-94494820 | Msa0899420:CDS | 45.0% |
| GGTGGTCTGTACTATAGCGT+CGG | + | chr6_1:94489882-94489901 | None:intergenic | 50.0% | |
| CAACATGACAACAGGAGGGA+AGG | - | chr6_1:94489919-94489938 | Msa0899420:CDS | 50.0% | |
| !!! | TGACGACGTTTTGAGGAAGG+GGG | + | chr6_1:94490036-94490055 | None:intergenic | 50.0% |
| ! | AGGCCAATGACGACGTTTTG+AGG | + | chr6_1:94490043-94490062 | None:intergenic | 50.0% |
| AAATTGCGGCAGCGAGAAAG+AGG | + | chr6_1:94490132-94490151 | None:intergenic | 50.0% | |
| GGTTGAGCTGAATTCGAGCT+AGG | + | chr6_1:94490186-94490205 | None:intergenic | 50.0% | |
| GGAGATTGGGACTGTTTCGT+CGG | - | chr6_1:94490336-94490355 | Msa0899420:intron | 50.0% | |
| !! | ACTGTTTCGTCGGTTGATGG+TGG | - | chr6_1:94490346-94490365 | Msa0899420:intron | 50.0% |
| !! | CTGTTTCGTCGGTTGATGGT+GGG | - | chr6_1:94490347-94490366 | Msa0899420:intron | 50.0% |
| !! | GGTTGATGGTGGGAGGATTA+GGG | - | chr6_1:94490357-94490376 | Msa0899420:intron | 50.0% |
| ! | TCAGTGGTTTGGGCATGTAG+AGG | - | chr6_1:94491016-94491035 | Msa0899420:intron | 50.0% |
| ! | CAGTGGTTTGGGCATGTAGA+GGG | - | chr6_1:94491017-94491036 | Msa0899420:intron | 50.0% |
| TGGGCATGTAGAGGGAAGAT+CGG | - | chr6_1:94491025-94491044 | Msa0899420:intron | 50.0% | |
| AGTCAAATCGCTAGAGACGG+AGG | - | chr6_1:94491096-94491115 | Msa0899420:intron | 50.0% | |
| ! | GACTTTTGCACTAAACCGCG+CGG | - | chr6_1:94491650-94491669 | Msa0899420:intron | 50.0% |
| CGAACCAATCCAAACCGCAT+TGG | - | chr6_1:94492067-94492086 | Msa0899420:intron | 50.0% | |
| !! | GCATGCGGTTTGGTTTGGTT+CGG | + | chr6_1:94492132-94492151 | None:intergenic | 50.0% |
| AGCGTACTCTGTGCTGAGTA+AGG | - | chr6_1:94493198-94493217 | Msa0899420:intron | 50.0% | |
| GAGTAAGGATGGCAGTGAGT+TGG | - | chr6_1:94493213-94493232 | Msa0899420:intron | 50.0% | |
| ! | TAAGGATGGCAGTGAGTTGG+TGG | - | chr6_1:94493216-94493235 | Msa0899420:intron | 50.0% |
| !! | ATGGCAGTGAGTTGGTGGAT+TGG | - | chr6_1:94493221-94493240 | Msa0899420:intron | 50.0% |
| !! | TGGCAGTGAGTTGGTGGATT+GGG | - | chr6_1:94493222-94493241 | Msa0899420:intron | 50.0% |
| !! | TGAGTTGGTGGATTGGGCTT+CGG | - | chr6_1:94493228-94493247 | Msa0899420:intron | 50.0% |
| !!! | GCTCCATTTTTTCGGTGGTG+TGG | - | chr6_1:94493428-94493447 | Msa0899420:intron | 50.0% |
| ! | TGTCTGTCTTGGGTTGTTGC+TGG | - | chr6_1:94493726-94493745 | Msa0899420:intron | 50.0% |
| ! | CATGTAGTTCCGGGTTGAGT+CGG | - | chr6_1:94493791-94493810 | Msa0899420:intron | 50.0% |
| AGTCGGACTGCTTCTAATGG+TGG | - | chr6_1:94493808-94493827 | Msa0899420:intron | 50.0% | |
| GTCGGACTGCTTCTAATGGT+GGG | - | chr6_1:94493809-94493828 | Msa0899420:intron | 50.0% | |
| ! | GCTTCTAATGGTGGGAGTGT+CGG | - | chr6_1:94493817-94493836 | Msa0899420:intron | 50.0% |
| ! | AGTTTTCTTGTCGGCAGTGC+TGG | - | chr6_1:94493895-94493914 | Msa0899420:intron | 50.0% |
| ! | GTTTTCTTGTCGGCAGTGCT+GGG | - | chr6_1:94493896-94493915 | Msa0899420:intron | 50.0% |
| TTTGGCGTACAATCGTCTGC+TGG | + | chr6_1:94494241-94494260 | None:intergenic | 50.0% | |
| ACGCCAAAACTGCTATCCTG+AGG | - | chr6_1:94494253-94494272 | Msa0899420:intron | 50.0% | |
| GGGTTAGGGTTTGAGGGAAG+AGG | + | chr6_1:94489965-94489984 | None:intergenic | 55.0% | |
| GGATGGGGTAGTATGAGGGA+AGG | + | chr6_1:94490063-94490082 | None:intergenic | 55.0% | |
| CGGTGGATGGGGTAGTATGA+GGG | + | chr6_1:94490067-94490086 | None:intergenic | 55.0% | |
| ACGGTGGATGGGGTAGTATG+AGG | + | chr6_1:94490068-94490087 | None:intergenic | 55.0% | |
| AGTTACGGCGGTTGTTGCGA+CGG | + | chr6_1:94490087-94490106 | None:intergenic | 55.0% | |
| ! | AGCGAGAAAGAGGAGTACGG+CGG | + | chr6_1:94490122-94490141 | None:intergenic | 55.0% |
| GGCAGCGAGAAAGAGGAGTA+CGG | + | chr6_1:94490125-94490144 | None:intergenic | 55.0% | |
| CTTCCTCTACCCATCGGATC+CGG | - | chr6_1:94490153-94490172 | Msa0899420:intron | 55.0% | |
| GGTGAAGTTCCGGATCCGAT+GGG | + | chr6_1:94490165-94490184 | None:intergenic | 55.0% | |
| AGGTGAAGTTCCGGATCCGA+TGG | + | chr6_1:94490166-94490185 | None:intergenic | 55.0% | |
| ! | GGGACTGTTTCGTCGGTTGA+TGG | - | chr6_1:94490343-94490362 | Msa0899420:intron | 55.0% |
| !! | TTTCGTCGGTTGATGGTGGG+AGG | - | chr6_1:94490350-94490369 | Msa0899420:intron | 55.0% |
| !! | CGGTTGATGGTGGGAGGATT+AGG | - | chr6_1:94490356-94490375 | Msa0899420:intron | 55.0% |
| AGAGGCAGTTGGGGTAGCAT+TGG | - | chr6_1:94490979-94490998 | Msa0899420:intron | 55.0% | |
| GAGGCAGTTGGGGTAGCATT+GGG | - | chr6_1:94490980-94490999 | Msa0899420:intron | 55.0% | |
| TTGCACTAAACCGCGCGGTT+CGG | - | chr6_1:94491655-94491674 | Msa0899420:intron | 55.0% | |
| ! | CGAACCTGATGGTGCAACGA+TGG | + | chr6_1:94491809-94491828 | None:intergenic | 55.0% |
| CAGTTCGACAACCTTTGCCC+TGG | + | chr6_1:94493002-94493021 | None:intergenic | 55.0% | |
| CTTCGATTGGGAGAAGGCTG+TGG | - | chr6_1:94493556-94493575 | Msa0899420:intron | 55.0% | |
| CCACCTCCCTGACAAGACAA+AGG | + | chr6_1:94493665-94493684 | None:intergenic | 55.0% | |
| CCTTTGTCTTGTCAGGGAGG+TGG | - | chr6_1:94493662-94493681 | Msa0899420:intron | 55.0% | |
| AGAAGCAGTCCGACTCAACC+CGG | + | chr6_1:94493803-94493822 | None:intergenic | 55.0% | |
| !! | TAATGGTGGGAGTGTCGGAG+TGG | - | chr6_1:94493822-94493841 | Msa0899420:intron | 55.0% |
| !! | AATGGTGGGAGTGTCGGAGT+GGG | - | chr6_1:94493823-94493842 | Msa0899420:intron | 55.0% |
| CTTCACACGACACTGTTGCC+TGG | + | chr6_1:94494202-94494221 | None:intergenic | 55.0% | |
| GGTTGTTGCGACGGTGGATG+GGG | + | chr6_1:94490078-94490097 | None:intergenic | 60.0% | |
| CGGTTGTTGCGACGGTGGAT+GGG | + | chr6_1:94490079-94490098 | None:intergenic | 60.0% | |
| GGAGTACGGCGGCTGTGATA+AGG | + | chr6_1:94490111-94490130 | None:intergenic | 60.0% | |
| GTTCCGGATCCGATGGGTAG+AGG | + | chr6_1:94490159-94490178 | None:intergenic | 60.0% | |
| ! | GATGTTAGCCTCGGGTACCG+TGG | - | chr6_1:94490310-94490329 | Msa0899420:intron | 60.0% |
| ! | TTAGCCTCGGGTACCGTGGT+CGG | - | chr6_1:94490314-94490333 | Msa0899420:intron | 60.0% |
| GGTACCGTGGTCGGGAGATT+GGG | - | chr6_1:94490323-94490342 | Msa0899420:intron | 60.0% | |
| CAGTCCCAATCTCCCGACCA+CGG | + | chr6_1:94490330-94490349 | None:intergenic | 60.0% | |
| GAGGATTAGGGCGCGAGGTT+CGG | - | chr6_1:94490369-94490388 | Msa0899420:intron | 60.0% | |
| !! | CTAAACCGCGCGGTTCGGTT+CGG | - | chr6_1:94491660-94491679 | Msa0899420:intron | 60.0% |
| !! | GTTCGCGGTGCGGTTTGGTT+CGG | + | chr6_1:94492193-94492212 | None:intergenic | 60.0% |
| !! | AACTAGGGGTGTTCGCGGTG+CGG | + | chr6_1:94492203-94492222 | None:intergenic | 60.0% |
| GGGAGGTGGTTCCAGTGTGT+AGG | - | chr6_1:94493676-94493695 | Msa0899420:intron | 60.0% | |
| GCGGTTGTTGCGACGGTGGA+TGG | + | chr6_1:94490080-94490099 | None:intergenic | 65.0% | |
| TACGGCGGTTGTTGCGACGG+TGG | + | chr6_1:94490084-94490103 | None:intergenic | 65.0% | |
| ! | TAGCCTCGGGTACCGTGGTC+GGG | - | chr6_1:94490315-94490334 | Msa0899420:intron | 65.0% |
| ! | GGGTACCGTGGTCGGGAGAT+TGG | - | chr6_1:94490322-94490341 | Msa0899420:intron | 65.0% |
| GCAAACCGAACCGAACCGCG+CGG | + | chr6_1:94491668-94491687 | None:intergenic | 65.0% | |
| !! | GCGCGGTTCGGTTCGGTTTG+CGG | - | chr6_1:94491667-94491686 | Msa0899420:intron | 65.0% |
| !! | GTGGGAGTGTCGGAGTGGGT+TGG | - | chr6_1:94493827-94493846 | Msa0899420:intron | 65.0% |
| TCTCCCGACCACGGTACCCG+AGG | + | chr6_1:94490321-94490340 | None:intergenic | 70.0% | |
| GGTGGGAGGATTAGGGCGCG+AGG | - | chr6_1:94490364-94490383 | Msa0899420:intron | 70.0% | |
| ! | GGGGTGTTCGCGGTGCGGTT+TGG | + | chr6_1:94492198-94492217 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 94489813 | 94494999 | 94489813 | ID=Msa0899420;Name=Msa0899420 |
| chr6_1 | mRNA | 94489813 | 94494999 | 94489813 | ID=Msa0899420-mRNA-1;Parent=Msa0899420;Name=Msa0899420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=110|1|1|1|1|1|3|11|290 |
| chr6_1 | exon | 94489813 | 94490012 | 94489813 | ID=Msa0899420-mRNA-1:exon:16147;Parent=Msa0899420-mRNA-1 |
| chr6_1 | exon | 94490538 | 94490609 | 94490538 | ID=Msa0899420-mRNA-1:exon:16146;Parent=Msa0899420-mRNA-1 |
| chr6_1 | exon | 94494278 | 94494999 | 94494278 | ID=Msa0899420-mRNA-1:exon:16145;Parent=Msa0899420-mRNA-1 |
| chr6_1 | five_prime_UTR | 94494890 | 94494999 | 94494890 | ID=Msa0899420-mRNA-1:five_prime_utr;Parent=Msa0899420-mRNA-1 |
| chr6_1 | CDS | 94494278 | 94494889 | 94494278 | ID=Msa0899420-mRNA-1:cds;Parent=Msa0899420-mRNA-1 |
| chr6_1 | CDS | 94490538 | 94490609 | 94490538 | ID=Msa0899420-mRNA-1:cds;Parent=Msa0899420-mRNA-1 |
| chr6_1 | CDS | 94489824 | 94490012 | 94489824 | ID=Msa0899420-mRNA-1:cds;Parent=Msa0899420-mRNA-1 |
| chr6_1 | three_prime_UTR | 94489813 | 94489823 | 94489813 | ID=Msa0899420-mRNA-1:three_prime_utr;Parent=Msa0899420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
