Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900210 | XP_003620654.1 | 64.183 | 416 | 50 | 5 | 402 | 727 | 200 | 606 | 2.45e-135 | 436 |
| Msa0900210 | XP_003620654.1 | 67.828 | 488 | 86 | 5 | 14 | 431 | 67 | 553 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900210 | sp|Q9SZD6|PETS_ARATH | 55.856 | 222 | 93 | 4 | 57 | 274 | 100 | 320 | 1.19e-63 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900210 | G7KPU0 | 64.183 | 416 | 50 | 5 | 402 | 727 | 200 | 606 | 1.17e-135 | 436 |
| Msa0900210 | G7KPU0 | 67.828 | 488 | 86 | 5 | 14 | 431 | 67 | 553 | 0.0 | 583 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0900210 | Msa0953420 | 0.860459 | 2.036203e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900210 | MtrunA17_Chr6g0486531 | 67.828 | 488 | 86 | 5 | 14 | 431 | 67 | 553 | 0.0 | 583 |
| Msa0900210 | MtrunA17_Chr6g0486531 | 64.183 | 416 | 50 | 5 | 402 | 727 | 200 | 606 | 2.25e-139 | 436 |
| Msa0900210 | MtrunA17_Chr6g0486351 | 58.779 | 131 | 23 | 1 | 14 | 144 | 66 | 165 | 3.90e-35 | 131 |
| Msa0900210 | MtrunA17_Chr6g0486521 | 77.778 | 90 | 19 | 1 | 342 | 431 | 1104 | 1192 | 6.17e-29 | 124 |
| Msa0900210 | MtrunA17_Chr6g0486521 | 52.601 | 173 | 34 | 8 | 567 | 731 | 1104 | 1236 | 2.18e-26 | 116 |
| Msa0900210 | MtrunA17_Chr2g0299561 | 86.047 | 43 | 6 | 0 | 534 | 576 | 1212 | 1254 | 4.85e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900210 | AT4G29060.2 | 55.856 | 222 | 93 | 4 | 57 | 274 | 100 | 320 | 3.29e-66 | 233 |
| Msa0900210 | AT4G29060.1 | 55.856 | 222 | 93 | 4 | 57 | 274 | 100 | 320 | 1.21e-64 | 232 |
Find 169 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAGTGGAAGGACTTTC+AGG | 0.177911 | 6_1:+95645882 | None:intergenic |
| CATTTATAATACTTCCTTCT+TGG | 0.224050 | 6_1:+95646640 | None:intergenic |
| CCTTGCAGGTCTTGAATGTT+TGG | 0.231493 | 6_1:+95650012 | None:intergenic |
| AGAAATCCTTCCTCCCTTTC+AGG | 0.231705 | 6_1:+95649554 | None:intergenic |
| TTCTGTTTGTGTGGCTGATA+TGG | 0.235592 | 6_1:+95650159 | None:intergenic |
| AACCAAGGAAGTATTATAAA+TGG | 0.238248 | 6_1:-95649347 | Msa0900210:CDS |
| GATGAAAGTGTAACAGAAAA+TGG | 0.270075 | 6_1:-95649179 | Msa0900210:CDS |
| ACCAAATCCTCATTCTTTAC+AGG | 0.285323 | 6_1:+95649974 | None:intergenic |
| GAGGAATATGACGATGGATT+TGG | 0.293165 | 6_1:-95649521 | Msa0900210:CDS |
| CGATGGATTTGGGAATATAA+TGG | 0.301532 | 6_1:-95649510 | Msa0900210:CDS |
| CCGGCATTCTCTGTATTGTT+TGG | 0.313554 | 6_1:+95649704 | None:intergenic |
| TTTGGTGCGTTTGTTGATTT+CGG | 0.315228 | 6_1:-95649908 | Msa0900210:CDS |
| TGTTCCAAGTGTGGTGTCTC+TGG | 0.316017 | 6_1:-95649828 | Msa0900210:CDS |
| CCTTCTGATTCTGTGATAAC+AGG | 0.334927 | 6_1:+95649050 | None:intergenic |
| AGGAATATGACGATGGATTT+GGG | 0.338035 | 6_1:-95649520 | Msa0900210:CDS |
| TCCTGTAAAGAATGAGGATT+TGG | 0.339661 | 6_1:-95649975 | Msa0900210:CDS |
| CAACAATCACAAATTGATAA+TGG | 0.344413 | 6_1:-95649128 | Msa0900210:CDS |
| CAAGAAGGAAGTATTATAAA+TGG | 0.345251 | 6_1:-95646639 | Msa0900210:CDS |
| TCTGAAGGAAACTTGAATAA+AGG | 0.350931 | 6_1:-95648796 | Msa0900210:intron |
| GGAAGGGGCTGCTGCAGAAT+TGG | 0.354088 | 6_1:-95646855 | Msa0900210:CDS |
| TGTTGTAGGTCTTGAGTTGC+AGG | 0.354161 | 6_1:-95649621 | Msa0900210:CDS |
| ATCTCTGATTCTGTAACAAC+AGG | 0.365365 | 6_1:+95646327 | None:intergenic |
| AGAGGCGGTTGCTGAAAGTT+TGG | 0.370006 | 6_1:-95646598 | Msa0900210:CDS |
| AGGACGGACTCTTCGAAATC+TGG | 0.380081 | 6_1:-95649674 | Msa0900210:CDS |
| CTTGTTCCAACTTTATTTGA+AGG | 0.382354 | 6_1:+95650082 | None:intergenic |
| TTGTGATTGTTGTTCATCTT+CGG | 0.382617 | 6_1:+95649139 | None:intergenic |
| GAGGAGGGATTCTTCGAAAT+CGG | 0.383710 | 6_1:-95647058 | Msa0900210:CDS |
| GATGGATTTGGGAATATAAT+GGG | 0.390667 | 6_1:-95649509 | Msa0900210:CDS |
| TCTTCAACTTGTGCTGATAC+AGG | 0.393393 | 6_1:+95645843 | None:intergenic |
| CACGAAATTTGTTGTAGGTC+AGG | 0.395926 | 6_1:-95647013 | Msa0900210:CDS |
| CCCCATTTATAATACTTCCT+TGG | 0.396072 | 6_1:+95649345 | None:intergenic |
| TCATCAACAACAGGTGAATC+TGG | 0.401749 | 6_1:+95650121 | None:intergenic |
| ACCAAGGAAGTATTATAAAT+GGG | 0.401970 | 6_1:-95649346 | Msa0900210:CDS |
| TAAACTTTCAGCAGCCGTTT+CGG | 0.402270 | 6_1:+95649307 | None:intergenic |
| CCTTTATTCAAGCTTTCCTC+AGG | 0.405283 | 6_1:+95646055 | None:intergenic |
| AGGACAAGCGACGTTGACTA+TGG | 0.406401 | 6_1:-95649429 | Msa0900210:CDS |
| AAGAATGAGGATTTGGTTCT+CGG | 0.407789 | 6_1:-95649968 | Msa0900210:CDS |
| TTCAGGAGAGGGAAGTTGAT+TGG | 0.408068 | 6_1:+95645899 | None:intergenic |
| TAATGGAAAGGAAGATGTTT+CGG | 0.411351 | 6_1:-95649111 | Msa0900210:CDS |
| TGTTGTAGGTCAGGAGTTGC+AGG | 0.415982 | 6_1:-95647004 | Msa0900210:CDS |
| GGAAAATCTTCGTTGGAGAT+TGG | 0.416616 | 6_1:-95649488 | Msa0900210:CDS |
| AGCACCTTATCTAACTCTAA+TGG | 0.420649 | 6_1:-95645789 | Msa0900210:CDS |
| CTTTCATCAGCCACGTCAAC+CGG | 0.421811 | 6_1:+95646486 | None:intergenic |
| AATGCAGAGAAATCCGGCTC+TGG | 0.428192 | 6_1:-95647081 | Msa0900210:intron |
| ATTTGATCAGCCACTTCAAC+CGG | 0.430618 | 6_1:+95646444 | None:intergenic |
| GTAAAATCTATCCAACCATT+TGG | 0.434906 | 6_1:-95649926 | Msa0900210:CDS |
| CCTGGTGTTTCTTGAGGAGC+TGG | 0.437084 | 6_1:+95646291 | None:intergenic |
| GCTGAAAGTTTAGCTGTTGA+AGG | 0.441812 | 6_1:-95649296 | Msa0900210:CDS |
| TCTAACTCTAATGGACAAAC+TGG | 0.444131 | 6_1:-95645780 | Msa0900210:CDS |
| AGGAGGGATTCTTCGAAATC+GGG | 0.452149 | 6_1:-95647057 | Msa0900210:CDS |
| AATACAGAGAATGCCGGCCC+TGG | 0.452881 | 6_1:-95649698 | Msa0900210:CDS |
| CTTTCATCATCCACTTCAAC+CGG | 0.454793 | 6_1:+95649194 | None:intergenic |
| GAATCTCCTTCAAATAAAGT+TGG | 0.455726 | 6_1:-95650088 | Msa0900210:CDS |
| GAGATTGATGCTAGTTTGAC+AGG | 0.456265 | 6_1:-95648838 | Msa0900210:CDS |
| AGAAATCCGGCTCTGGGAGG+AGG | 0.460173 | 6_1:-95647074 | Msa0900210:CDS |
| CCTGAGGAAAGCTTGAATAA+AGG | 0.465580 | 6_1:-95646055 | Msa0900210:intron |
| AACTGCATCATTATCTTCCT+CGG | 0.465955 | 6_1:+95646359 | None:intergenic |
| TTCGAAGAGTCCGTCCTCCC+AGG | 0.466023 | 6_1:+95649680 | None:intergenic |
| GGCATTACTGCTTCAGATGA+AGG | 0.466224 | 6_1:-95645759 | Msa0900210:CDS |
| GAAGGAAGGAGCTTGTTCAT+TGG | 0.470290 | 6_1:-95649405 | Msa0900210:CDS |
| GCATCAATCTCATTGTTCTC+TGG | 0.474819 | 6_1:+95648850 | None:intergenic |
| CAAGTAACTTCATCAACAAC+AGG | 0.475491 | 6_1:+95650112 | None:intergenic |
| GGAAACAATGCAGAGAAATC+CGG | 0.483890 | 6_1:-95647087 | Msa0900210:intron |
| AGGTCTTGAGTTGCAGGGTA+GGG | 0.488632 | 6_1:-95649615 | Msa0900210:CDS |
| TGATTCTGTGATAACAGGGC+CGG | 0.491023 | 6_1:+95649055 | None:intergenic |
| CCAGTGTTGGCATCGGACTT+AGG | 0.492624 | 6_1:+95650046 | None:intergenic |
| TAGGTCTTGAGTTGCAGGGT+AGG | 0.497467 | 6_1:-95649616 | Msa0900210:CDS |
| TCTTGCACCTCTTCAGTGGA+AGG | 0.497881 | 6_1:+95645873 | None:intergenic |
| GATAATGATGCAGTTGAGCC+TGG | 0.500373 | 6_1:-95646351 | Msa0900210:CDS |
| TGTCCCAGAGACACCACACT+TGG | 0.501675 | 6_1:+95649824 | None:intergenic |
| CGATTCCTCGACAACTGTTG+TGG | 0.502643 | 6_1:-95646676 | Msa0900210:CDS |
| ATCATCAACTACAGAAATTG+TGG | 0.503202 | 6_1:-95646712 | Msa0900210:CDS |
| TATAATGGGAAAATCTTCGT+TGG | 0.506112 | 6_1:-95649495 | Msa0900210:CDS |
| AGAATGAGGATTTGGTTCTC+GGG | 0.506377 | 6_1:-95649967 | Msa0900210:CDS |
| AGAAATTGTGGAAGATTCAC+TGG | 0.515793 | 6_1:-95646700 | Msa0900210:CDS |
| GTTCCAAGTGTGGTGTCTCT+GGG | 0.520153 | 6_1:-95649827 | Msa0900210:CDS |
| AGAGTCCGTCCTCCCAGGGC+CGG | 0.522782 | 6_1:+95649685 | None:intergenic |
| GATAGTGATGCAGTTGAGCC+CGG | 0.522789 | 6_1:-95649074 | Msa0900210:CDS |
| AAATCAACAAACGCACCAAA+TGG | 0.523061 | 6_1:+95649911 | None:intergenic |
| AGTGATGATTTGTCTTCTGA+AGG | 0.523379 | 6_1:-95648811 | Msa0900210:CDS |
| AGAATCCCTCCTCCCAGAGC+CGG | 0.526049 | 6_1:+95647068 | None:intergenic |
| GATTCTGTAACAACAGGGCC+AGG | 0.526402 | 6_1:+95646333 | None:intergenic |
| TTGTTCTTGCACCTCTTCAG+TGG | 0.527232 | 6_1:+95645869 | None:intergenic |
| TATAAATGGTGCCGCTGAGA+AGG | 0.528405 | 6_1:-95646625 | Msa0900210:CDS |
| GTCTCTGGGACAAGAAGTTA+CGG | 0.529239 | 6_1:-95649813 | Msa0900210:CDS |
| GAATGCCGGCCCTGGGAGGA+CGG | 0.529761 | 6_1:-95649690 | Msa0900210:CDS |
| GGCTTTCATAGAACCAGTGT+TGG | 0.533168 | 6_1:+95650033 | None:intergenic |
| GGCTGTAAACTCAATTATTG+AGG | 0.533493 | 6_1:-95649264 | Msa0900210:CDS |
| AACTGACTCACCGGTTGAAG+TGG | 0.534688 | 6_1:-95646454 | Msa0900210:CDS |
| CACTGACAAGGAAACCGAAA+CGG | 0.535235 | 6_1:-95649321 | Msa0900210:CDS |
| GATTTCGGAGCTTTCACAGA+TGG | 0.535932 | 6_1:-95649893 | Msa0900210:CDS |
| CTTTATTCAAGCTTTCCTCA+GGG | 0.535989 | 6_1:+95646056 | None:intergenic |
| TTGTCCATTAGAGTTAGATA+AGG | 0.536309 | 6_1:+95645785 | None:intergenic |
| GTGGAAGGACTTTCAGGAGA+GGG | 0.539684 | 6_1:+95645888 | None:intergenic |
| CAACAAACGCACCAAATGGT+TGG | 0.540062 | 6_1:+95649915 | None:intergenic |
| CAAGAACCTGGTGTTTCTTG+AGG | 0.540517 | 6_1:+95646285 | None:intergenic |
| TCAGATGAAGGATCGAGTAA+AGG | 0.545714 | 6_1:-95645747 | Msa0900210:intron |
| GATTCTGTGATAACAGGGCC+GGG | 0.546112 | 6_1:+95649056 | None:intergenic |
| TGAAAGTCCTTCCACTGAAG+AGG | 0.547689 | 6_1:-95645880 | Msa0900210:CDS |
| AGCCGACTCACCGGTTGAAG+TGG | 0.549420 | 6_1:-95649204 | Msa0900210:CDS |
| ATGCAGAGAAATCCGGCTCT+GGG | 0.550324 | 6_1:-95647080 | Msa0900210:intron |
| TCACTTCCTGAAAGGGAGGA+AGG | 0.556129 | 6_1:-95649560 | Msa0900210:CDS |
| CATAGAACCAGTGTTGGCAT+CGG | 0.556549 | 6_1:+95650039 | None:intergenic |
| TGTTTGTGTGGCTGATATGG+AGG | 0.557724 | 6_1:+95650162 | None:intergenic |
| ACGTTGACTATGAAGAAGGA+AGG | 0.557914 | 6_1:-95646872 | Msa0900210:CDS |
| AACTGACTCACCGGTTGACG+TGG | 0.558529 | 6_1:-95646496 | Msa0900210:CDS |
| CCTAAGTCCGATGCCAACAC+TGG | 0.558953 | 6_1:-95650046 | Msa0900210:CDS |
| ATCCACTTCAACCGGTGAGT+CGG | 0.560292 | 6_1:+95649202 | None:intergenic |
| CAATGTTGAAGCCGACTCAC+CGG | 0.562734 | 6_1:-95649213 | Msa0900210:CDS |
| ATTCTTCGAAATCGGGTCCA+AGG | 0.565509 | 6_1:-95647050 | Msa0900210:CDS |
| TTTAATAGAAACTGACTCAC+CGG | 0.565786 | 6_1:-95646463 | Msa0900210:CDS |
| GAAATCCGGCTCTGGGAGGA+GGG | 0.566218 | 6_1:-95647073 | Msa0900210:CDS |
| ATACAGAGAATGCCGGCCCT+GGG | 0.566940 | 6_1:-95649697 | Msa0900210:CDS |
| CACGGATACTTCTGTTTGTG+TGG | 0.567649 | 6_1:+95650150 | None:intergenic |
| ATCATCTGCAACAGTTGTCG+AGG | 0.572718 | 6_1:+95649376 | None:intergenic |
| TCGAAGAGTCCGTCCTCCCA+GGG | 0.574157 | 6_1:+95649681 | None:intergenic |
| CGTTTCGGTTTCCTTGTCAG+TGG | 0.574984 | 6_1:+95649322 | None:intergenic |
| TATAAATGGGGCCACTGACA+AGG | 0.575950 | 6_1:-95649333 | Msa0900210:CDS |
| AGCTGTTGAAGGAGATTCAG+AGG | 0.578651 | 6_1:-95649285 | Msa0900210:CDS |
| CAACGTTGAAACTGACTCAC+CGG | 0.581016 | 6_1:-95646505 | Msa0900210:CDS |
| CCAAACAATACAGAGAATGC+CGG | 0.582779 | 6_1:-95649704 | Msa0900210:CDS |
| GAAGGAGCTTGTTCATTGGT+CGG | 0.584573 | 6_1:-95649401 | Msa0900210:CDS |
| TACTTCACTTCCTGAAAGGG+AGG | 0.584912 | 6_1:-95649564 | Msa0900210:CDS |
| AGCGACGTTGACTATGAAGA+AGG | 0.585064 | 6_1:-95646876 | Msa0900210:CDS |
| AGGTTCGAGATTTATTTCTG+TGG | 0.586330 | 6_1:+95650182 | None:intergenic |
| GAATGAGGATTTGGTTCTCG+GGG | 0.589693 | 6_1:-95649966 | Msa0900210:CDS |
| GTTGTAGGTCTTGAGTTGCA+GGG | 0.591154 | 6_1:-95649620 | Msa0900210:CDS |
| ATCACAAATTGATAATGGAA+AGG | 0.592304 | 6_1:-95649123 | Msa0900210:CDS |
| CGTTGACTATGAAGAAGGAA+GGG | 0.592342 | 6_1:-95646871 | Msa0900210:CDS |
| AGCGTCCACAACAGTTGTCG+AGG | 0.600792 | 6_1:+95646671 | None:intergenic |
| AGGATTTCTACTGTTAGATG+AGG | 0.602660 | 6_1:-95649540 | Msa0900210:CDS |
| TGCTGTAAATTCAATTATCG+AGG | 0.603012 | 6_1:-95646556 | Msa0900210:CDS |
| TGAAGCAGTTGCAATTGCAT+CGG | 0.603597 | 6_1:-95645820 | Msa0900210:CDS |
| AAATCCTCATTCTTTACAGG+AGG | 0.604341 | 6_1:+95649977 | None:intergenic |
| GTGAAGAATATGATGAGGAG+TGG | 0.606154 | 6_1:-95649593 | Msa0900210:CDS |
| GTTGTAGGTCAGGAGTTGCA+GGG | 0.609211 | 6_1:-95647003 | Msa0900210:intron |
| ATCAGAAACTGACAATGGAA+AGG | 0.610096 | 6_1:-95646400 | Msa0900210:CDS |
| GATGCCTCCTGTAAAGAATG+AGG | 0.611247 | 6_1:-95649981 | Msa0900210:CDS |
| CTTCTGATTCTGTGATAACA+GGG | 0.611839 | 6_1:+95649051 | None:intergenic |
| GACGCTGAAAGCAACCAAGA+AGG | 0.613970 | 6_1:-95646654 | Msa0900210:CDS |
| AGAATTTGTAGCTGCAACCG+AGG | 0.619096 | 6_1:-95646376 | Msa0900210:CDS |
| AAACAATCAGAAACTGACAA+TGG | 0.627847 | 6_1:-95646405 | Msa0900210:CDS |
| GTTGACTATGAAGAAGGAAG+GGG | 0.629193 | 6_1:-95646870 | Msa0900210:CDS |
| GTTGAGTGATAGCTATGTAA+AGG | 0.629234 | 6_1:-95649852 | Msa0900210:CDS |
| CGCTGAGAAGGAAACAGAGG+CGG | 0.632734 | 6_1:-95646613 | Msa0900210:CDS |
| AGCGACGTTGACTATGGAGA+AGG | 0.633110 | 6_1:-95649423 | Msa0900210:CDS |
| CCAGCTCCTCAAGAAACACC+AGG | 0.634532 | 6_1:-95646291 | Msa0900210:intron |
| GCAGATGATGAAAGCAACCA+AGG | 0.635224 | 6_1:-95649362 | Msa0900210:CDS |
| AGGTGAATCTGGTACCTCCA+CGG | 0.639281 | 6_1:+95650132 | None:intergenic |
| GGCTGCTGCAGAATTGGACA+AGG | 0.640267 | 6_1:-95646849 | Msa0900210:CDS |
| GTAGGGTGAAGAATATGATG+AGG | 0.641323 | 6_1:-95649598 | Msa0900210:CDS |
| CCAAGGAAGTATTATAAATG+GGG | 0.641703 | 6_1:-95649345 | Msa0900210:CDS |
| CCTGTTATCACAGAATCAGA+AGG | 0.645765 | 6_1:-95649050 | Msa0900210:intron |
| TTTATTCAAGCTTTCCTCAG+GGG | 0.650245 | 6_1:+95646057 | None:intergenic |
| TGATGCTAGTTTGTCCCCTG+AGG | 0.651987 | 6_1:-95646071 | Msa0900210:CDS |
| TCATCTGCAACAGTTGTCGA+GGG | 0.653917 | 6_1:+95649377 | None:intergenic |
| CGCCTCTGTTTCCTTCTCAG+CGG | 0.656717 | 6_1:+95646614 | None:intergenic |
| CAGAGAATGCCGGCCCTGGG+AGG | 0.660145 | 6_1:-95649694 | Msa0900210:CDS |
| CCAAACATTCAAGACCTGCA+AGG | 0.664639 | 6_1:-95650012 | Msa0900210:CDS |
| AGTGGAAGGACTTTCAGGAG+AGG | 0.675717 | 6_1:+95645887 | None:intergenic |
| CAGAGAAATCCGGCTCTGGG+AGG | 0.678127 | 6_1:-95647077 | Msa0900210:CDS |
| AGTGGCTGATCAAATTGTTG+CGG | 0.682112 | 6_1:-95646436 | Msa0900210:CDS |
| TGCCGCTGAGAAGGAAACAG+AGG | 0.682448 | 6_1:-95646616 | Msa0900210:CDS |
| ACGTTGACTATGGAGAAGGA+AGG | 0.684183 | 6_1:-95649419 | Msa0900210:CDS |
| TCTCTGATTCTGTAACAACA+GGG | 0.691768 | 6_1:+95646328 | None:intergenic |
| TGTAAAGGATGTTCCAAGTG+TGG | 0.698157 | 6_1:-95649837 | Msa0900210:CDS |
| TTAGATGAGGAATATGACGA+TGG | 0.699424 | 6_1:-95649527 | Msa0900210:CDS |
| CACACAAACAGAAGTATCCG+TGG | 0.708648 | 6_1:-95650149 | Msa0900210:CDS |
| ACAAACAGAAGTATCCGTGG+AGG | 0.775634 | 6_1:-95650146 | Msa0900210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATATTTAATTTTTTTT+TGG | + | chr6_1:95647869-95647888 | None:intergenic | 0.0% |
| !! | AAAAAAAATTAAATATTTAT+AGG | - | chr6_1:95647869-95647888 | Msa0900210:intron | 0.0% |
| !! | AAAAAAATTAAATATTTATA+GGG | - | chr6_1:95647870-95647889 | Msa0900210:intron | 0.0% |
| !!! | TCATAATATTTTCAATTTTA+TGG | + | chr6_1:95647649-95647668 | None:intergenic | 10.0% |
| !!! | AAAAAATTCGAATTTTTTTA+AGG | + | chr6_1:95647680-95647699 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTAAATTAGTTA+GGG | + | chr6_1:95648222-95648241 | None:intergenic | 10.0% |
| !!! | ATTATAGTTTTCATTAACTT+TGG | - | chr6_1:95646772-95646791 | Msa0900210:intron | 15.0% |
| !! | ATTCATATTTAATTCATGTT+TGG | + | chr6_1:95647705-95647724 | None:intergenic | 15.0% |
| !!! | AAATTGATAACAATTTTGAA+AGG | - | chr6_1:95648067-95648086 | Msa0900210:intron | 15.0% |
| !!! | TAAAAACAGTTCTTTAAAAT+AGG | + | chr6_1:95648148-95648167 | None:intergenic | 15.0% |
| !! | TTTGTATTTAAATTAGTTAG+GGG | + | chr6_1:95648221-95648240 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTAAATTAGTT+AGG | + | chr6_1:95648223-95648242 | None:intergenic | 15.0% |
| !!! | TAAGGATATTACTAAATTTT+TGG | - | chr6_1:95648595-95648614 | Msa0900210:intron | 15.0% |
| !! | GTATTTATATATGGAAATAT+TGG | - | chr6_1:95649114-95649133 | Msa0900210:CDS | 15.0% |
| !!! | TTTGATTTTAGCTATAATTT+CGG | + | chr6_1:95649154-95649173 | None:intergenic | 15.0% |
| !! | TTATCTTATAAGCTTAAATT+AGG | - | chr6_1:95649982-95650001 | Msa0900210:CDS | 15.0% |
| !!! | AATCAAAGACAATAATTTTT+TGG | - | chr6_1:95650200-95650219 | Msa0900210:CDS | 15.0% |
| !! | TTGCATAAAATTGATTGATT+CGG | + | chr6_1:95646731-95646750 | None:intergenic | 20.0% |
| !! | TCAGTTATATCTATTAATAG+AGG | + | chr6_1:95646800-95646819 | None:intergenic | 20.0% |
| !! | ATTTATTCAAAAATATGACC+AGG | + | chr6_1:95647622-95647641 | None:intergenic | 20.0% |
| !!! | TTTTTTTATAATGTGTCTAG+TGG | - | chr6_1:95648037-95648056 | Msa0900210:intron | 20.0% |
| !! | TTGTATTTAAATTAGTTAGG+GGG | + | chr6_1:95648220-95648239 | None:intergenic | 20.0% |
| !! | ATCTCATTCGTATTTATATA+TGG | - | chr6_1:95649105-95649124 | Msa0900210:CDS | 20.0% |
| !!! | TAAGCAAAAAACTACATTTT+AGG | - | chr6_1:95649783-95649802 | Msa0900210:CDS | 20.0% |
| !!! | TTTTGGTCTCTAATTTTTAT+TGG | - | chr6_1:95650217-95650236 | Msa0900210:CDS | 20.0% |
| !!! | AACCAAGGAAGTATTATAAA+TGG | - | chr6_1:95646014-95646033 | Msa0900210:intron | 25.0% |
| !!! | ACCAAGGAAGTATTATAAAT+GGG | - | chr6_1:95646015-95646034 | Msa0900210:intron | 25.0% |
| ! | CAACAATCACAAATTGATAA+TGG | - | chr6_1:95646233-95646252 | Msa0900210:intron | 25.0% |
| !!! | ATCACAAATTGATAATGGAA+AGG | - | chr6_1:95646238-95646257 | Msa0900210:intron | 25.0% |
| ! | TCGCTTTCATAATTTACATA+TGG | - | chr6_1:95646371-95646390 | Msa0900210:CDS | 25.0% |
| ! | TCATTTATAAAAAGTCATCG+AGG | + | chr6_1:95646622-95646641 | None:intergenic | 25.0% |
| ! | AATTCTAATGAACAAACAGA+AGG | - | chr6_1:95646899-95646918 | Msa0900210:intron | 25.0% |
| ! | TAATAATTTCAACACAGGTA+GGG | + | chr6_1:95646975-95646994 | None:intergenic | 25.0% |
| ! | TACCTGTGTTGAAATTATTA+GGG | - | chr6_1:95646975-95646994 | Msa0900210:intron | 25.0% |
| !!! | AAGATTTTGGAAATTGAAGA+TGG | - | chr6_1:95647113-95647132 | Msa0900210:intron | 25.0% |
| !!! | AGATTTTGGAAATTGAAGAT+GGG | - | chr6_1:95647114-95647133 | Msa0900210:intron | 25.0% |
| !! | AAAAAGATGTCATTTGATTG+AGG | + | chr6_1:95647152-95647171 | None:intergenic | 25.0% |
| !! | ATTTTCATATCTGTTGTCAA+AGG | - | chr6_1:95647293-95647312 | Msa0900210:intron | 25.0% |
| !!! | TAATGTGTTTTTGATGCATT+TGG | - | chr6_1:95647408-95647427 | Msa0900210:intron | 25.0% |
| !!! | TTTTTGATGCATTTGGTTTT+AGG | - | chr6_1:95647415-95647434 | Msa0900210:intron | 25.0% |
| ! | AACCAAAAGGTAATTTCTAA+GGG | + | chr6_1:95647495-95647514 | None:intergenic | 25.0% |
| !! | TGATGGCTGAAAATTTTATA+GGG | - | chr6_1:95647813-95647832 | Msa0900210:intron | 25.0% |
| ! | TAGGGATGAAAAACATATTT+AGG | - | chr6_1:95647888-95647907 | Msa0900210:intron | 25.0% |
| ! | ACATAACATTTCGTTATACA+AGG | - | chr6_1:95647929-95647948 | Msa0900210:intron | 25.0% |
| ! | AATTTATCCTCGAAAGATTA+AGG | + | chr6_1:95647999-95648018 | None:intergenic | 25.0% |
| !!! | AAAAACACGAAATTTGTTGT+AGG | - | chr6_1:95648343-95648362 | Msa0900210:intron | 25.0% |
| !!! | TTACTAAATTTTTGGATCAG+AGG | - | chr6_1:95648603-95648622 | Msa0900210:intron | 25.0% |
| !!! | TACTAAATTTTTGGATCAGA+GGG | - | chr6_1:95648604-95648623 | Msa0900210:intron | 25.0% |
| ! | CATTTATAATACTTCCTTCT+TGG | + | chr6_1:95648724-95648743 | None:intergenic | 25.0% |
| !!! | CAAGAAGGAAGTATTATAAA+TGG | - | chr6_1:95648722-95648741 | Msa0900210:intron | 25.0% |
| ! | CAAAGTTAATAGGATACTAT+AGG | + | chr6_1:95649411-95649430 | None:intergenic | 25.0% |
| ! | ATTGAGGATTCAAAGTTAAT+AGG | + | chr6_1:95649421-95649440 | None:intergenic | 25.0% |
| ! | ATTAACTTTGAATCCTCAAT+CGG | - | chr6_1:95649421-95649440 | Msa0900210:CDS | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr6_1:95649773-95649792 | None:intergenic | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | - | chr6_1:95649808-95649827 | Msa0900210:CDS | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr6_1:95649882-95649901 | Msa0900210:CDS | 25.0% |
| ! | NNNAAAACTATGACCTTGTT+TGG | + | chr6_1:95650016-95650035 | None:intergenic | 25.0% |
| GAATCTCCTTCAAATAAAGT+TGG | - | chr6_1:95645273-95645292 | Msa0900210:intron | 30.0% | |
| ! | CTTGTTCCAACTTTATTTGA+AGG | + | chr6_1:95645282-95645301 | None:intergenic | 30.0% |
| GTAAAATCTATCCAACCATT+TGG | - | chr6_1:95645435-95645454 | Msa0900210:intron | 30.0% | |
| ! | GTGTTTTTCTTATCTTTCGT+TGG | + | chr6_1:95645714-95645733 | None:intergenic | 30.0% |
| !! | AAAAACACGAAGTTTGTTGT+AGG | - | chr6_1:95645726-95645745 | Msa0900210:intron | 30.0% |
| ! | TTTTACTTCACTTCCTGAAA+GGG | - | chr6_1:95645794-95645813 | Msa0900210:CDS | 30.0% |
| ! | GATGGATTTGGGAATATAAT+GGG | - | chr6_1:95645852-95645871 | Msa0900210:CDS | 30.0% |
| ! | TATAATGGGAAAATCTTCGT+TGG | - | chr6_1:95645866-95645885 | Msa0900210:CDS | 30.0% |
| !! | CCAAGGAAGTATTATAAATG+GGG | - | chr6_1:95646016-95646035 | Msa0900210:intron | 30.0% |
| ! | GATGAAAGTGTAACAGAAAA+TGG | - | chr6_1:95646182-95646201 | Msa0900210:intron | 30.0% |
| ! | TTGTGATTGTTGTTCATCTT+CGG | + | chr6_1:95646225-95646244 | None:intergenic | 30.0% |
| TAATGGAAAGGAAGATGTTT+CGG | - | chr6_1:95646250-95646269 | Msa0900210:intron | 30.0% | |
| TCTGAAGGAAACTTGAATAA+AGG | - | chr6_1:95646565-95646584 | Msa0900210:CDS | 30.0% | |
| GTACAATATCATGCAATATG+TGG | + | chr6_1:95646687-95646706 | None:intergenic | 30.0% | |
| GATTGTGTAAAAAACGAAAG+GGG | + | chr6_1:95646709-95646728 | None:intergenic | 30.0% | |
| GGATTGTGTAAAAAACGAAA+GGG | + | chr6_1:95646710-95646729 | None:intergenic | 30.0% | |
| ATGATGTCTTTCAATTGCTT+TGG | + | chr6_1:95646754-95646773 | None:intergenic | 30.0% | |
| ! | ATTAGATATGCTGTTTGTCT+CGG | + | chr6_1:95646882-95646901 | None:intergenic | 30.0% |
| ACAAAAACAAGATGATCATC+GGG | + | chr6_1:95646952-95646971 | None:intergenic | 30.0% | |
| GACAAAAACAAGATGATCAT+CGG | + | chr6_1:95646953-95646972 | None:intergenic | 30.0% | |
| CTAATAATTTCAACACAGGT+AGG | + | chr6_1:95646976-95646995 | None:intergenic | 30.0% | |
| CTACCTGTGTTGAAATTATT+AGG | - | chr6_1:95646974-95646993 | Msa0900210:intron | 30.0% | |
| ATCCCTAATAATTTCAACAC+AGG | + | chr6_1:95646980-95646999 | None:intergenic | 30.0% | |
| TGTTGAAATTATTAGGGATG+TGG | - | chr6_1:95646981-95647000 | Msa0900210:intron | 30.0% | |
| GTTGAAATTATTAGGGATGT+GGG | - | chr6_1:95646982-95647001 | Msa0900210:intron | 30.0% | |
| !! | TTGTTAAGTTGAACTCTTGT+AGG | + | chr6_1:95647053-95647072 | None:intergenic | 30.0% |
| AATAAATCATGAAGCTTCCT+TGG | - | chr6_1:95647074-95647093 | Msa0900210:CDS | 30.0% | |
| GTGAACATTACAACTAAAAC+AGG | + | chr6_1:95647354-95647373 | None:intergenic | 30.0% | |
| ! | TTCCCTTAGAAATTACCTTT+TGG | - | chr6_1:95647490-95647509 | Msa0900210:intron | 30.0% |
| CAACCAAAAGGTAATTTCTA+AGG | + | chr6_1:95647496-95647515 | None:intergenic | 30.0% | |
| !! | ATTGACTTGTTTCAACCAAA+AGG | + | chr6_1:95647508-95647527 | None:intergenic | 30.0% |
| GTTGAAACAAGTCAATCAAT+AGG | - | chr6_1:95647512-95647531 | Msa0900210:intron | 30.0% | |
| ATTTAATGTATGTGTGTGTG+TGG | - | chr6_1:95647581-95647600 | Msa0900210:intron | 30.0% | |
| TTTAATGTATGTGTGTGTGT+GGG | - | chr6_1:95647582-95647601 | Msa0900210:intron | 30.0% | |
| ! | ACATGAGTTGACTTAAAAGT+AGG | - | chr6_1:95647781-95647800 | Msa0900210:intron | 30.0% |
| AAAGTAGGTACTAAAAGTGA+TGG | - | chr6_1:95647796-95647815 | Msa0900210:intron | 30.0% | |
| ! | GTGATGGCTGAAAATTTTAT+AGG | - | chr6_1:95647812-95647831 | Msa0900210:intron | 30.0% |
| ! | AAGTCGAAGGAAAATTTTAG+AGG | - | chr6_1:95647841-95647860 | Msa0900210:intron | 30.0% |
| AACATAACCTTAATCTTTCG+AGG | - | chr6_1:95647989-95648008 | Msa0900210:intron | 30.0% | |
| !!! | TTAATTGCACTTTTGACTTG+CGG | - | chr6_1:95648188-95648207 | Msa0900210:intron | 30.0% |
| ACTCGTTAATCCAAAACATA+GGG | + | chr6_1:95648250-95648269 | None:intergenic | 30.0% | |
| ! | GTGTTTTTCTTATCTTTCCT+TGG | + | chr6_1:95648331-95648350 | None:intergenic | 30.0% |
| ! | ACTTTTATATCACTTCCTGA+AGG | - | chr6_1:95648409-95648428 | Msa0900210:intron | 30.0% |
| !!! | ATTGGCTTTTCGTAGAAATA+AGG | - | chr6_1:95648577-95648596 | Msa0900210:intron | 30.0% |
| ATCATCAACTACAGAAATTG+TGG | - | chr6_1:95648649-95648668 | Msa0900210:intron | 30.0% | |
| TGCTGTAAATTCAATTATCG+AGG | - | chr6_1:95648805-95648824 | Msa0900210:CDS | 30.0% | |
| ! | TTTAATAGAAACTGACTCAC+CGG | - | chr6_1:95648898-95648917 | Msa0900210:intron | 30.0% |
| AAACAATCAGAAACTGACAA+TGG | - | chr6_1:95648956-95648975 | Msa0900210:intron | 30.0% | |
| ! | GTCATCTATTTGAAATGCAA+AGG | + | chr6_1:95649238-95649257 | None:intergenic | 30.0% |
| GATACTATAGGAAAAGAAAG+GGG | + | chr6_1:95649399-95649418 | None:intergenic | 30.0% | |
| GGATACTATAGGAAAAGAAA+GGG | + | chr6_1:95649400-95649419 | None:intergenic | 30.0% | |
| AGGATACTATAGGAAAAGAA+AGG | + | chr6_1:95649401-95649420 | None:intergenic | 30.0% | |
| TTGTCCATTAGAGTTAGATA+AGG | + | chr6_1:95649579-95649598 | None:intergenic | 30.0% | |
| AAAAAAGAATATACACCCTC+CGG | - | chr6_1:95649751-95649770 | Msa0900210:CDS | 30.0% | |
| ! | TTAGGTTGTTTATCCAAACA+AGG | - | chr6_1:95650000-95650019 | Msa0900210:CDS | 30.0% |
| !! | AGGTTCGAGATTTATTTCTG+TGG | + | chr6_1:95645182-95645201 | None:intergenic | 35.0% |
| CAAGTAACTTCATCAACAAC+AGG | + | chr6_1:95645252-95645271 | None:intergenic | 35.0% | |
| AAATCCTCATTCTTTACAGG+AGG | + | chr6_1:95645387-95645406 | None:intergenic | 35.0% | |
| TCCTGTAAAGAATGAGGATT+TGG | - | chr6_1:95645386-95645405 | Msa0900210:intron | 35.0% | |
| ACCAAATCCTCATTCTTTAC+AGG | + | chr6_1:95645390-95645409 | None:intergenic | 35.0% | |
| !! | AAGAATGAGGATTTGGTTCT+CGG | - | chr6_1:95645393-95645412 | Msa0900210:intron | 35.0% |
| AAATCAACAAACGCACCAAA+TGG | + | chr6_1:95645453-95645472 | None:intergenic | 35.0% | |
| !! | TTTGGTGCGTTTGTTGATTT+CGG | - | chr6_1:95645453-95645472 | Msa0900210:intron | 35.0% |
| GTTGAGTGATAGCTATGTAA+AGG | - | chr6_1:95645509-95645528 | Msa0900210:intron | 35.0% | |
| ATGCTTGAAAAAGCTGATAC+TGG | - | chr6_1:95645618-95645637 | Msa0900210:intron | 35.0% | |
| ! | CTTTTACTTCACTTCCTGAA+AGG | - | chr6_1:95645793-95645812 | Msa0900210:CDS | 35.0% |
| AGGATTTCTACTGTTAGATG+AGG | - | chr6_1:95645821-95645840 | Msa0900210:CDS | 35.0% | |
| TTAGATGAGGAATATGACGA+TGG | - | chr6_1:95645834-95645853 | Msa0900210:CDS | 35.0% | |
| ! | AGGAATATGACGATGGATTT+GGG | - | chr6_1:95645841-95645860 | Msa0900210:CDS | 35.0% |
| ! | CGATGGATTTGGGAATATAA+TGG | - | chr6_1:95645851-95645870 | Msa0900210:CDS | 35.0% |
| CCCCATTTATAATACTTCCT+TGG | + | chr6_1:95646019-95646038 | None:intergenic | 35.0% | |
| GGCTGTAAACTCAATTATTG+AGG | - | chr6_1:95646097-95646116 | Msa0900210:CDS | 35.0% | |
| CTTCTGATTCTGTGATAACA+GGG | + | chr6_1:95646313-95646332 | None:intergenic | 35.0% | |
| TGCAATAACATGCATGTACA+TGG | - | chr6_1:95646450-95646469 | Msa0900210:CDS | 35.0% | |
| ! | AGTGATGATTTGTCTTCTGA+AGG | - | chr6_1:95646550-95646569 | Msa0900210:CDS | 35.0% |
| CGGATTGTGTAAAAAACGAA+AGG | + | chr6_1:95646711-95646730 | None:intergenic | 35.0% | |
| AATTATTAGGGATGTGGGTA+CGG | - | chr6_1:95646987-95647006 | Msa0900210:intron | 35.0% | |
| ! | ATGTCATTTGATTGAGGTTG+CGG | + | chr6_1:95647146-95647165 | None:intergenic | 35.0% |
| !! | TTCTCTCTGAAGTAGTTATG+AGG | + | chr6_1:95647178-95647197 | None:intergenic | 35.0% |
| TATGAAGAGTCTCGACAAAA+TGG | - | chr6_1:95647222-95647241 | Msa0900210:intron | 35.0% | |
| TTATAGGGACTAAAAGTCGA+AGG | - | chr6_1:95647828-95647847 | Msa0900210:intron | 35.0% | |
| TCGTTAATCCAAAACATAGG+GGG | + | chr6_1:95648248-95648267 | None:intergenic | 35.0% | |
| CTCGTTAATCCAAAACATAG+GGG | + | chr6_1:95648249-95648268 | None:intergenic | 35.0% | |
| GACTCGTTAATCCAAAACAT+AGG | + | chr6_1:95648251-95648270 | None:intergenic | 35.0% | |
| ATTTCTCTGCATTGTTTCCT+TGG | + | chr6_1:95648273-95648292 | None:intergenic | 35.0% | |
| TCGCAATAAACCCTTTGTAT+TGG | - | chr6_1:95648559-95648578 | Msa0900210:intron | 35.0% | |
| CTACGAAAAGCCAATACAAA+GGG | + | chr6_1:95648572-95648591 | None:intergenic | 35.0% | |
| TCTACGAAAAGCCAATACAA+AGG | + | chr6_1:95648573-95648592 | None:intergenic | 35.0% | |
| AGAAATTGTGGAAGATTCAC+TGG | - | chr6_1:95648661-95648680 | Msa0900210:intron | 35.0% | |
| ATCAGAAACTGACAATGGAA+AGG | - | chr6_1:95648961-95648980 | Msa0900210:intron | 35.0% | |
| AACTGCATCATTATCTTCCT+CGG | + | chr6_1:95649005-95649024 | None:intergenic | 35.0% | |
| TCTCTGATTCTGTAACAACA+GGG | + | chr6_1:95649036-95649055 | None:intergenic | 35.0% | |
| ATCTCTGATTCTGTAACAAC+AGG | + | chr6_1:95649037-95649056 | None:intergenic | 35.0% | |
| TGAGATAGAAAACAAGAACC+TGG | + | chr6_1:95649091-95649110 | None:intergenic | 35.0% | |
| TTTATTCAAGCTTTCCTCAG+GGG | + | chr6_1:95649307-95649326 | None:intergenic | 35.0% | |
| CTTTATTCAAGCTTTCCTCA+GGG | + | chr6_1:95649308-95649327 | None:intergenic | 35.0% | |
| AGCACCTTATCTAACTCTAA+TGG | - | chr6_1:95649572-95649591 | Msa0900210:CDS | 35.0% | |
| ! | TCTAACTCTAATGGACAAAC+TGG | - | chr6_1:95649581-95649600 | Msa0900210:CDS | 35.0% |
| TTCTGTTTGTGTGGCTGATA+TGG | + | chr6_1:95645205-95645224 | None:intergenic | 40.0% | |
| TCATCAACAACAGGTGAATC+TGG | + | chr6_1:95645243-95645262 | None:intergenic | 40.0% | |
| !! | AGAATGAGGATTTGGTTCTC+GGG | - | chr6_1:95645394-95645413 | Msa0900210:intron | 40.0% |
| TGTAAAGGATGTTCCAAGTG+TGG | - | chr6_1:95645524-95645543 | Msa0900210:intron | 40.0% | |
| CCAAACAATACAGAGAATGC+CGG | - | chr6_1:95645657-95645676 | Msa0900210:intron | 40.0% | |
| GTAGGGTGAAGAATATGATG+AGG | - | chr6_1:95645763-95645782 | Msa0900210:CDS | 40.0% | |
| GTGAAGAATATGATGAGGAG+TGG | - | chr6_1:95645768-95645787 | Msa0900210:CDS | 40.0% | |
| ! | GAGGAATATGACGATGGATT+TGG | - | chr6_1:95645840-95645859 | Msa0900210:CDS | 40.0% |
| GGAAAATCTTCGTTGGAGAT+TGG | - | chr6_1:95645873-95645892 | Msa0900210:CDS | 40.0% | |
| TAAACTTTCAGCAGCCGTTT+CGG | + | chr6_1:95646057-95646076 | None:intergenic | 40.0% | |
| GCTGAAAGTTTAGCTGTTGA+AGG | - | chr6_1:95646065-95646084 | Msa0900210:CDS | 40.0% | |
| CTTTCATCATCCACTTCAAC+CGG | + | chr6_1:95646170-95646189 | None:intergenic | 40.0% | |
| CCTTCTGATTCTGTGATAAC+AGG | + | chr6_1:95646314-95646333 | None:intergenic | 40.0% | |
| CCTGTTATCACAGAATCAGA+AGG | - | chr6_1:95646311-95646330 | Msa0900210:CDS | 40.0% | |
| GCATCAATCTCATTGTTCTC+TGG | + | chr6_1:95646514-95646533 | None:intergenic | 40.0% | |
| ! | GAGATTGATGCTAGTTTGAC+AGG | - | chr6_1:95646523-95646542 | Msa0900210:CDS | 40.0% |
| AATGAACAAACAGAAGGCTC+AGG | - | chr6_1:95646905-95646924 | Msa0900210:intron | 40.0% | |
| CAGAGAGAAGAAACAAGACA+TGG | - | chr6_1:95647189-95647208 | Msa0900210:intron | 40.0% | |
| CACTGAAGAGTGATACAACT+CGG | - | chr6_1:95647371-95647390 | Msa0900210:intron | 40.0% | |
| TGGGATTGAAAACTTAGTCC+TGG | - | chr6_1:95647601-95647620 | Msa0900210:intron | 40.0% | |
| !! | GTTTTGGATTAACGAGTCCA+AGG | - | chr6_1:95648253-95648272 | Msa0900210:intron | 40.0% |
| GGAAACAATGCAGAGAAATC+CGG | - | chr6_1:95648274-95648293 | Msa0900210:intron | 40.0% | |
| !! | CACGAAATTTGTTGTAGGTC+AGG | - | chr6_1:95648348-95648367 | Msa0900210:intron | 40.0% |
| TATATCACTTCCTGAAGGAG+AGG | - | chr6_1:95648414-95648433 | Msa0900210:intron | 40.0% | |
| ACGCAAAACTCGTATGCTAA+TGG | + | chr6_1:95648451-95648470 | None:intergenic | 40.0% | |
| ! | CGAGTTTTGCGTATCACAAT+AGG | - | chr6_1:95648459-95648478 | Msa0900210:intron | 40.0% |
| ! | ACGTTGACTATGAAGAAGGA+AGG | - | chr6_1:95648489-95648508 | Msa0900210:intron | 40.0% |
| ! | CGTTGACTATGAAGAAGGAA+GGG | - | chr6_1:95648490-95648509 | Msa0900210:intron | 40.0% |
| GTTGACTATGAAGAAGGAAG+GGG | - | chr6_1:95648491-95648510 | Msa0900210:intron | 40.0% | |
| ATTTGATCAGCCACTTCAAC+CGG | + | chr6_1:95648920-95648939 | None:intergenic | 40.0% | |
| AGTGGCTGATCAAATTGTTG+CGG | - | chr6_1:95648925-95648944 | Msa0900210:intron | 40.0% | |
| CCTTTATTCAAGCTTTCCTC+AGG | + | chr6_1:95649309-95649328 | None:intergenic | 40.0% | |
| CCTGAGGAAAGCTTGAATAA+AGG | - | chr6_1:95649306-95649325 | Msa0900210:CDS | 40.0% | |
| ! | TCAATTACATCTGCCGATTG+AGG | + | chr6_1:95649437-95649456 | None:intergenic | 40.0% |
| ! | TCTTCAACTTGTGCTGATAC+AGG | + | chr6_1:95649521-95649540 | None:intergenic | 40.0% |
| TGAAGCAGTTGCAATTGCAT+CGG | - | chr6_1:95649541-95649560 | Msa0900210:CDS | 40.0% | |
| TCAGATGAAGGATCGAGTAA+AGG | - | chr6_1:95649614-95649633 | Msa0900210:CDS | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr6_1:95649769-95649788 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr6_1:95649770-95649789 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr6_1:95649885-95649904 | Msa0900210:CDS | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr6_1:95649886-95649905 | Msa0900210:CDS | 40.0% | |
| ! | ATAAATGGAAGTACACCCTC+CGG | + | chr6_1:95649904-95649923 | None:intergenic | 40.0% |
| TGTTTGTGTGGCTGATATGG+AGG | + | chr6_1:95645202-95645221 | None:intergenic | 45.0% | |
| CACGGATACTTCTGTTTGTG+TGG | + | chr6_1:95645214-95645233 | None:intergenic | 45.0% | |
| !! | CACACAAACAGAAGTATCCG+TGG | - | chr6_1:95645212-95645231 | Msa0900210:intron | 45.0% |
| !! | ACAAACAGAAGTATCCGTGG+AGG | - | chr6_1:95645215-95645234 | Msa0900210:intron | 45.0% |
| !! | CATAGAACCAGTGTTGGCAT+CGG | + | chr6_1:95645325-95645344 | None:intergenic | 45.0% |
| GGCTTTCATAGAACCAGTGT+TGG | + | chr6_1:95645331-95645350 | None:intergenic | 45.0% | |
| CCTTGCAGGTCTTGAATGTT+TGG | + | chr6_1:95645352-95645371 | None:intergenic | 45.0% | |
| CCAAACATTCAAGACCTGCA+AGG | - | chr6_1:95645349-95645368 | Msa0900210:intron | 45.0% | |
| GATGCCTCCTGTAAAGAATG+AGG | - | chr6_1:95645380-95645399 | Msa0900210:intron | 45.0% | |
| !! | GAATGAGGATTTGGTTCTCG+GGG | - | chr6_1:95645395-95645414 | Msa0900210:intron | 45.0% |
| CAACAAACGCACCAAATGGT+TGG | + | chr6_1:95645449-95645468 | None:intergenic | 45.0% | |
| GATTTCGGAGCTTTCACAGA+TGG | - | chr6_1:95645468-95645487 | Msa0900210:intron | 45.0% | |
| !! | GTCTCTGGGACAAGAAGTTA+CGG | - | chr6_1:95645548-95645567 | Msa0900210:intron | 45.0% |
| CCGGCATTCTCTGTATTGTT+TGG | + | chr6_1:95645660-95645679 | None:intergenic | 45.0% | |
| ! | TGTTGTAGGTCTTGAGTTGC+AGG | - | chr6_1:95645740-95645759 | Msa0900210:intron | 45.0% |
| ! | GTTGTAGGTCTTGAGTTGCA+GGG | - | chr6_1:95645741-95645760 | Msa0900210:intron | 45.0% |
| TACTTCACTTCCTGAAAGGG+AGG | - | chr6_1:95645797-95645816 | Msa0900210:CDS | 45.0% | |
| AGAAATCCTTCCTCCCTTTC+AGG | + | chr6_1:95645810-95645829 | None:intergenic | 45.0% | |
| ! | CGAGTTTTGCGTATCACAAG+AGG | - | chr6_1:95645912-95645931 | Msa0900210:CDS | 45.0% |
| ! | ACGTTGACTATGGAGAAGGA+AGG | - | chr6_1:95645942-95645961 | Msa0900210:intron | 45.0% |
| ! | GAAGGAAGGAGCTTGTTCAT+TGG | - | chr6_1:95645956-95645975 | Msa0900210:intron | 45.0% |
| ! | GAAGGAGCTTGTTCATTGGT+CGG | - | chr6_1:95645960-95645979 | Msa0900210:intron | 45.0% |
| TCATCTGCAACAGTTGTCGA+GGG | + | chr6_1:95645987-95646006 | None:intergenic | 45.0% | |
| ATCATCTGCAACAGTTGTCG+AGG | + | chr6_1:95645988-95646007 | None:intergenic | 45.0% | |
| GCAGATGATGAAAGCAACCA+AGG | - | chr6_1:95645999-95646018 | Msa0900210:intron | 45.0% | |
| TATAAATGGGGCCACTGACA+AGG | - | chr6_1:95646028-95646047 | Msa0900210:intron | 45.0% | |
| CACTGACAAGGAAACCGAAA+CGG | - | chr6_1:95646040-95646059 | Msa0900210:intron | 45.0% | |
| AGCTGTTGAAGGAGATTCAG+AGG | - | chr6_1:95646076-95646095 | Msa0900210:CDS | 45.0% | |
| TGATTCTGTGATAACAGGGC+CGG | + | chr6_1:95646309-95646328 | None:intergenic | 45.0% | |
| AAAAAGTCATCGAGGCAAGC+AGG | + | chr6_1:95646614-95646633 | None:intergenic | 45.0% | |
| ATCATGAAGCTTCCTTGGCT+TGG | - | chr6_1:95647079-95647098 | Msa0900210:intron | 45.0% | |
| !! | GGCTCAGAAGTGCAAGATTT+TGG | - | chr6_1:95647100-95647119 | Msa0900210:intron | 45.0% |
| !!! | GCACTTTTGACTTGCGGTTA+CGG | - | chr6_1:95648194-95648213 | Msa0900210:intron | 45.0% |
| ! | CAAAACAGCCCCCTATGTTT+TGG | - | chr6_1:95648237-95648256 | Msa0900210:intron | 45.0% |
| GAGGAGGGATTCTTCGAAAT+CGG | - | chr6_1:95648303-95648322 | Msa0900210:intron | 45.0% | |
| AGGAGGGATTCTTCGAAATC+GGG | - | chr6_1:95648304-95648323 | Msa0900210:intron | 45.0% | |
| ATTCTTCGAAATCGGGTCCA+AGG | - | chr6_1:95648311-95648330 | Msa0900210:intron | 45.0% | |
| GTACGGTGAAGAATATGACG+AGG | - | chr6_1:95648380-95648399 | Msa0900210:intron | 45.0% | |
| GTGAAGAATATGACGAGGAG+TGG | - | chr6_1:95648385-95648404 | Msa0900210:intron | 45.0% | |
| AGAAATCCTTCCTCTCCTTC+AGG | + | chr6_1:95648427-95648446 | None:intergenic | 45.0% | |
| ! | AGCGACGTTGACTATGAAGA+AGG | - | chr6_1:95648485-95648504 | Msa0900210:intron | 45.0% |
| !! | TATAAATGGTGCCGCTGAGA+AGG | - | chr6_1:95648736-95648755 | Msa0900210:intron | 45.0% |
| ! | CAACGTTGAAACTGACTCAC+CGG | - | chr6_1:95648856-95648875 | Msa0900210:CDS | 45.0% |
| AGAATTTGTAGCTGCAACCG+AGG | - | chr6_1:95648985-95649004 | Msa0900210:intron | 45.0% | |
| GATAATGATGCAGTTGAGCC+TGG | - | chr6_1:95649010-95649029 | Msa0900210:intron | 45.0% | |
| CAAGAACCTGGTGTTTCTTG+AGG | + | chr6_1:95649079-95649098 | None:intergenic | 45.0% | |
| ! | TTCAGGAGAGGGAAGTTGAT+TGG | + | chr6_1:95649465-95649484 | None:intergenic | 45.0% |
| TCTTCAGTGGAAGGACTTTC+AGG | + | chr6_1:95649482-95649501 | None:intergenic | 45.0% | |
| TGAAAGTCCTTCCACTGAAG+AGG | - | chr6_1:95649481-95649500 | Msa0900210:CDS | 45.0% | |
| TTGTTCTTGCACCTCTTCAG+TGG | + | chr6_1:95649495-95649514 | None:intergenic | 45.0% | |
| GGCATTACTGCTTCAGATGA+AGG | - | chr6_1:95649602-95649621 | Msa0900210:CDS | 45.0% | |
| !! | TTTAATAAGTAAATAAAAAA+AGG | - | chr6_1:95648164-95648183 | Msa0900210:intron | 5.0% |
| !! | AAGATAAAATATATTATAAA+TGG | + | chr6_1:95649919-95649938 | None:intergenic | 5.0% |
| !! | AATTAATAATCTAAATTATT+TGG | + | chr6_1:95650155-95650174 | None:intergenic | 5.0% |
| AGGTGAATCTGGTACCTCCA+CGG | + | chr6_1:95645232-95645251 | None:intergenic | 50.0% | |
| !! | GGCATCTTGCTTTTCCTTGC+AGG | + | chr6_1:95645366-95645385 | None:intergenic | 50.0% |
| TGTTCCAAGTGTGGTGTCTC+TGG | - | chr6_1:95645533-95645552 | Msa0900210:intron | 50.0% | |
| GTTCCAAGTGTGGTGTCTCT+GGG | - | chr6_1:95645534-95645553 | Msa0900210:intron | 50.0% | |
| ! | AGGACGGACTCTTCGAAATC+TGG | - | chr6_1:95645687-95645706 | Msa0900210:intron | 50.0% |
| ! | TAGGTCTTGAGTTGCAGGGT+AGG | - | chr6_1:95645745-95645764 | Msa0900210:intron | 50.0% |
| ! | AGGTCTTGAGTTGCAGGGTA+GGG | - | chr6_1:95645746-95645765 | Msa0900210:intron | 50.0% |
| TCACTTCCTGAAAGGGAGGA+AGG | - | chr6_1:95645801-95645820 | Msa0900210:CDS | 50.0% | |
| ! | AGGACAAGCGACGTTGACTA+TGG | - | chr6_1:95645932-95645951 | Msa0900210:intron | 50.0% |
| ! | AGCGACGTTGACTATGGAGA+AGG | - | chr6_1:95645938-95645957 | Msa0900210:intron | 50.0% |
| CGTTTCGGTTTCCTTGTCAG+TGG | + | chr6_1:95646042-95646061 | None:intergenic | 50.0% | |
| ! | CAATGTTGAAGCCGACTCAC+CGG | - | chr6_1:95646148-95646167 | Msa0900210:intron | 50.0% |
| ATCCACTTCAACCGGTGAGT+CGG | + | chr6_1:95646162-95646181 | None:intergenic | 50.0% | |
| GATAGTGATGCAGTTGAGCC+CGG | - | chr6_1:95646287-95646306 | Msa0900210:intron | 50.0% | |
| GATTCTGTGATAACAGGGCC+GGG | + | chr6_1:95646308-95646327 | None:intergenic | 50.0% | |
| ACAAACACCTGTCACAGCAC+AGG | - | chr6_1:95646835-95646854 | Msa0900210:intron | 50.0% | |
| TCTTCAACCTGTGCTGTGAC+AGG | + | chr6_1:95646845-95646864 | None:intergenic | 50.0% | |
| ! | TGTCACAGCACAGGTTGAAG+AGG | - | chr6_1:95646844-95646863 | Msa0900210:CDS | 50.0% |
| CAAACAGAAGGCTCAGGTGA+AGG | - | chr6_1:95646911-95646930 | Msa0900210:intron | 50.0% | |
| TATTAGGGATGTGGGTACGG+AGG | - | chr6_1:95646990-95647009 | Msa0900210:intron | 50.0% | |
| TGAAGAGCTGCGGGTATAGT+TGG | - | chr6_1:95647013-95647032 | Msa0900210:CDS | 50.0% | |
| GAAGAGCTGCGGGTATAGTT+GGG | - | chr6_1:95647014-95647033 | Msa0900210:CDS | 50.0% | |
| AATGCAGAGAAATCCGGCTC+TGG | - | chr6_1:95648280-95648299 | Msa0900210:intron | 50.0% | |
| ATGCAGAGAAATCCGGCTCT+GGG | - | chr6_1:95648281-95648300 | Msa0900210:intron | 50.0% | |
| TGTTGTAGGTCAGGAGTTGC+AGG | - | chr6_1:95648357-95648376 | Msa0900210:intron | 50.0% | |
| GTTGTAGGTCAGGAGTTGCA+GGG | - | chr6_1:95648358-95648377 | Msa0900210:intron | 50.0% | |
| TCACTTCCTGAAGGAGAGGA+AGG | - | chr6_1:95648418-95648437 | Msa0900210:intron | 50.0% | |
| ! | GACAAGGCACTTGCACAAGT+GGG | - | chr6_1:95648528-95648547 | Msa0900210:intron | 50.0% |
| CGATTCCTCGACAACTGTTG+TGG | - | chr6_1:95648685-95648704 | Msa0900210:intron | 50.0% | |
| GACGCTGAAAGCAACCAAGA+AGG | - | chr6_1:95648707-95648726 | Msa0900210:intron | 50.0% | |
| AGAGGCGGTTGCTGAAAGTT+TGG | - | chr6_1:95648763-95648782 | Msa0900210:intron | 50.0% | |
| CTTTCATCAGCCACGTCAAC+CGG | + | chr6_1:95648878-95648897 | None:intergenic | 50.0% | |
| ! | AACTGACTCACCGGTTGAAG+TGG | - | chr6_1:95648907-95648926 | Msa0900210:intron | 50.0% |
| GATTCTGTAACAACAGGGCC+AGG | + | chr6_1:95649031-95649050 | None:intergenic | 50.0% | |
| ! | TGATGCTAGTTTGTCCCCTG+AGG | - | chr6_1:95649290-95649309 | Msa0900210:CDS | 50.0% |
| GTGGAAGGACTTTCAGGAGA+GGG | + | chr6_1:95649476-95649495 | None:intergenic | 50.0% | |
| AGTGGAAGGACTTTCAGGAG+AGG | + | chr6_1:95649477-95649496 | None:intergenic | 50.0% | |
| TCTTGCACCTCTTCAGTGGA+AGG | + | chr6_1:95649491-95649510 | None:intergenic | 50.0% | |
| !! | CCAGTGTTGGCATCGGACTT+AGG | + | chr6_1:95645318-95645337 | None:intergenic | 55.0% |
| CCTAAGTCCGATGCCAACAC+TGG | - | chr6_1:95645315-95645334 | Msa0900210:intron | 55.0% | |
| ! | GTTCTCGGGGCAGCTTTTAC+TGG | - | chr6_1:95645408-95645427 | Msa0900210:intron | 55.0% |
| TGTCCCAGAGACACCACACT+TGG | + | chr6_1:95645540-95645559 | None:intergenic | 55.0% | |
| AATACAGAGAATGCCGGCCC+TGG | - | chr6_1:95645663-95645682 | Msa0900210:intron | 55.0% | |
| ATACAGAGAATGCCGGCCCT+GGG | - | chr6_1:95645664-95645683 | Msa0900210:intron | 55.0% | |
| TGCACTTCTGAGCCAAGCCA+AGG | + | chr6_1:95647094-95647113 | None:intergenic | 55.0% | |
| AGGTCAGGAGTTGCAGGGTA+CGG | - | chr6_1:95648363-95648382 | Msa0900210:intron | 55.0% | |
| GGCTGCTGCAGAATTGGACA+AGG | - | chr6_1:95648512-95648531 | Msa0900210:intron | 55.0% | |
| ! | GGACAAGGCACTTGCACAAG+TGG | - | chr6_1:95648527-95648546 | Msa0900210:intron | 55.0% |
| AGCGTCCACAACAGTTGTCG+AGG | + | chr6_1:95648693-95648712 | None:intergenic | 55.0% | |
| TGCCGCTGAGAAGGAAACAG+AGG | - | chr6_1:95648745-95648764 | Msa0900210:intron | 55.0% | |
| CGCCTCTGTTTCCTTCTCAG+CGG | + | chr6_1:95648750-95648769 | None:intergenic | 55.0% | |
| CGCTGAGAAGGAAACAGAGG+CGG | - | chr6_1:95648748-95648767 | Msa0900210:intron | 55.0% | |
| ! | AACTGACTCACCGGTTGACG+TGG | - | chr6_1:95648865-95648884 | Msa0900210:CDS | 55.0% |
| CCTGGTGTTTCTTGAGGAGC+TGG | + | chr6_1:95649073-95649092 | None:intergenic | 55.0% | |
| CCAGCTCCTCAAGAAACACC+AGG | - | chr6_1:95649070-95649089 | Msa0900210:CDS | 55.0% | |
| TCGAAGAGTCCGTCCTCCCA+GGG | + | chr6_1:95645683-95645702 | None:intergenic | 60.0% | |
| TTCGAAGAGTCCGTCCTCCC+AGG | + | chr6_1:95645684-95645703 | None:intergenic | 60.0% | |
| ! | AGCCGACTCACCGGTTGAAG+TGG | - | chr6_1:95646157-95646176 | Msa0900210:intron | 60.0% |
| GGTACGGAGGTGAAGAGCTG+CGG | - | chr6_1:95647003-95647022 | Msa0900210:intron | 60.0% | |
| GTACGGAGGTGAAGAGCTGC+GGG | - | chr6_1:95647004-95647023 | Msa0900210:CDS | 60.0% | |
| !! | CAGAGAAATCCGGCTCTGGG+AGG | - | chr6_1:95648284-95648303 | Msa0900210:intron | 60.0% |
| !! | AGAAATCCGGCTCTGGGAGG+AGG | - | chr6_1:95648287-95648306 | Msa0900210:intron | 60.0% |
| !! | GAAATCCGGCTCTGGGAGGA+GGG | - | chr6_1:95648288-95648307 | Msa0900210:intron | 60.0% |
| AGAATCCCTCCTCCCAGAGC+CGG | + | chr6_1:95648296-95648315 | None:intergenic | 60.0% | |
| GGAAGGGGCTGCTGCAGAAT+TGG | - | chr6_1:95648506-95648525 | Msa0900210:intron | 60.0% | |
| CAGAGAATGCCGGCCCTGGG+AGG | - | chr6_1:95645667-95645686 | Msa0900210:intron | 70.0% | |
| GAATGCCGGCCCTGGGAGGA+CGG | - | chr6_1:95645671-95645690 | Msa0900210:intron | 70.0% | |
| AGAGTCCGTCCTCCCAGGGC+CGG | + | chr6_1:95645679-95645698 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 95645141 | 95650242 | 95645141 | ID=Msa0900210;Name=Msa0900210 |
| chr6_1 | mRNA | 95645141 | 95650242 | 95645141 | ID=Msa0900210-mRNA-1;Parent=Msa0900210;Name=Msa0900210-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.87|1|1|8|0|738 |
| chr6_1 | exon | 95649051 | 95650242 | 95649051 | ID=Msa0900210-mRNA-1:exon:16561;Parent=Msa0900210-mRNA-1 |
| chr6_1 | exon | 95648797 | 95648895 | 95648797 | ID=Msa0900210-mRNA-1:exon:16560;Parent=Msa0900210-mRNA-1 |
| chr6_1 | exon | 95647004 | 95647096 | 95647004 | ID=Msa0900210-mRNA-1:exon:16559;Parent=Msa0900210-mRNA-1 |
| chr6_1 | exon | 95646838 | 95646902 | 95646838 | ID=Msa0900210-mRNA-1:exon:16558;Parent=Msa0900210-mRNA-1 |
| chr6_1 | exon | 95646292 | 95646760 | 95646292 | ID=Msa0900210-mRNA-1:exon:16557;Parent=Msa0900210-mRNA-1 |
| chr6_1 | exon | 95646056 | 95646130 | 95646056 | ID=Msa0900210-mRNA-1:exon:16556;Parent=Msa0900210-mRNA-1 |
| chr6_1 | exon | 95645748 | 95645936 | 95645748 | ID=Msa0900210-mRNA-1:exon:16555;Parent=Msa0900210-mRNA-1 |
| chr6_1 | exon | 95645141 | 95645175 | 95645141 | ID=Msa0900210-mRNA-1:exon:16554;Parent=Msa0900210-mRNA-1 |
| chr6_1 | CDS | 95649051 | 95650242 | 95649051 | ID=Msa0900210-mRNA-1:cds;Parent=Msa0900210-mRNA-1 |
| chr6_1 | CDS | 95648797 | 95648895 | 95648797 | ID=Msa0900210-mRNA-1:cds;Parent=Msa0900210-mRNA-1 |
| chr6_1 | CDS | 95647004 | 95647096 | 95647004 | ID=Msa0900210-mRNA-1:cds;Parent=Msa0900210-mRNA-1 |
| chr6_1 | CDS | 95646838 | 95646902 | 95646838 | ID=Msa0900210-mRNA-1:cds;Parent=Msa0900210-mRNA-1 |
| chr6_1 | CDS | 95646292 | 95646760 | 95646292 | ID=Msa0900210-mRNA-1:cds;Parent=Msa0900210-mRNA-1 |
| chr6_1 | CDS | 95646056 | 95646130 | 95646056 | ID=Msa0900210-mRNA-1:cds;Parent=Msa0900210-mRNA-1 |
| chr6_1 | CDS | 95645748 | 95645936 | 95645748 | ID=Msa0900210-mRNA-1:cds;Parent=Msa0900210-mRNA-1 |
| chr6_1 | CDS | 95645141 | 95645175 | 95645141 | ID=Msa0900210-mRNA-1:cds;Parent=Msa0900210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
