AlfalfaGEDB | Msa0901980

M. sativa cultivar zhongmu-4 / Msa0901980

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901980	XP_013445124.1	76.290	814	142	4	1	810	1	767	0.0	1268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901980	sp\|Q9LW83\|CE101_ARATH	39.651	860	408	28	18	811	5	819	4.92e-161	496

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901980	A0A072U017	76.290	814	142	4	1	810	1	767	0.0	1268

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0901980	Msa1189370	0.827894	1.215621e-54	-8.615850e-47
Msa0901980	Msa1324140	0.838707	2.450654e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0901980	MtrunA17_Chr8g0357691	76.290	814	142	4	1	810	1	767	1268
Msa0901980	MtrunA17_Chr8g0357631	69.847	849	164	12	2	830	1	777	1148
Msa0901980	MtrunA17_Chr8g0357651	70.131	837	184	16	2	830	1	779	1123
Msa0901980	MtrunA17_Chr8g0357711	69.222	848	174	17	5	830	4	786	1099
Msa0901980	MtrunA17_Chr8g0357761	68.065	858	176	17	2	830	1	789	1064
Msa0901980	MtrunA17_Chr8g0358071	50.985	863	328	20	2	838	1	794	799
Msa0901980	MtrunA17_Chr8g0358031	52.246	846	307	16	2	819	1	777	798
Msa0901980	MtrunA17_Chr8g0357831	71.455	550	89	5	287	830	1	488	768
Msa0901980	MtrunA17_Chr8g0358121	50.598	836	318	17	3	819	1	760	763
Msa0901980	MtrunA17_Chr8g0357961	49.942	869	336	21	3	838	1	803	761

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901980	AT3G16030.1	39.651	860	408	28	18	811	5	819	5.01e-162	496
Msa0901980	AT3G16030.6	38.365	881	411	28	18	811	5	840	1.15e-157	485
Msa0901980	AT1G67520.3	39.308	809	418	23	35	813	25	790	1.16e-155	478
Msa0901980	AT1G67520.6	39.308	809	418	23	35	813	32	797	1.63e-155	478
Msa0901980	AT1G67520.4	39.157	807	379	25	35	813	25	747	2.82e-154	473
Msa0901980	AT3G16030.2	40.890	719	333	21	152	811	11	696	2.56e-149	458
Msa0901980	AT4G21380.1	38.677	786	392	21	71	808	72	815	4.84e-148	459
Msa0901980	AT1G65800.1	38.156	781	390	23	82	811	78	816	6.40e-146	453
Msa0901980	AT1G65790.1	38.651	771	390	20	82	808	78	809	1.64e-144	450
Msa0901980	AT1G11300.1	37.852	782	382	24	83	819	77	799	4.23e-141	440

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Find 171 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATGAATCTGTGAAA+AGG	0.480546	6_1:-99553167	None:intergenic
AAACGAAAACATGTGCTTCG+AGG	0.513361	6_1:+99550480	Msa0901980:CDS
AAACGCTTTAACATAATAGA+AGG	0.429330	6_1:+99551338	Msa0901980:CDS
AAAGTTTCCGGTATCAAACA+AGG	0.642964	6_1:-99549114	None:intergenic
AACAGTGCAAGCAGTGGTCA+TGG	0.530524	6_1:+99550107	Msa0901980:CDS
AACATTGGTCACTGGTTTCA+TGG	0.319600	6_1:+99549243	Msa0901980:CDS
AACTGGTCAACATTGGTCAC+TGG	0.537134	6_1:+99549235	Msa0901980:CDS
AACTTCTGGACAAGGAATGA+CGG	0.611936	6_1:+99550914	Msa0901980:CDS
AAGAAACCAGCATACTATGG+TGG	0.667087	6_1:+99552065	Msa0901980:CDS
AAGCCTGCTTGCAGAAATTT+TGG	0.202995	6_1:+99549620	Msa0901980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCATAGTAGAATCCAATAT+TGG	+	chr6_1:99549032-99549051	Msa0901980:CDS	30.0%
CATAGTAGAATCCAATATTG+GGG	+	chr6_1:99549034-99549053	Msa0901980:CDS	30.0%
ACAGTAGTACTTCTATTCAA+AGG	-	chr6_1:99549089-99549108	None:intergenic	30.0%
TTCAAAAGAACATTGTGTTG+TGG	+	chr6_1:99549150-99549169	Msa0901980:CDS	30.0%
ATGACCAATTCTCTTCTTAT+GGG	-	chr6_1:99549323-99549342	None:intergenic	30.0%
AATGACCAATTCTCTTCTTA+TGG	-	chr6_1:99549324-99549343	None:intergenic	30.0%
AGCATAGAGAAAAAGTTTAC+TGG	+	chr6_1:99549345-99549364	Msa0901980:CDS	30.0%
GAAAAAGTTTACTGGAAAAG+TGG	+	chr6_1:99549353-99549372	Msa0901980:CDS	30.0%
TTGATAAACAGGAATAGGAA+AGG	+	chr6_1:99549527-99549546	Msa0901980:CDS	30.0%
CAAAATAGGTTATCCCAATA+TGG	+	chr6_1:99549658-99549677	Msa0901980:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	99548714	99553239	99548714	ID=Msa0901980;Name=Msa0901980
chr6_1	mRNA	99548714	99553239	99548714	ID=Msa0901980-mRNA-1;Parent=Msa0901980;Name=Msa0901980-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.62\|0.44\|0.88\|1\|1\|9\|0\|911
chr6_1	exon	99548714	99549875	99548714	ID=Msa0901980-mRNA-1:exon:17540;Parent=Msa0901980-mRNA-1
chr6_1	exon	99549982	99550167	99549982	ID=Msa0901980-mRNA-1:exon:17541;Parent=Msa0901980-mRNA-1
chr6_1	exon	99550430	99550501	99550430	ID=Msa0901980-mRNA-1:exon:17542;Parent=Msa0901980-mRNA-1
chr6_1	exon	99550587	99550780	99550587	ID=Msa0901980-mRNA-1:exon:17543;Parent=Msa0901980-mRNA-1
chr6_1	exon	99550867	99551077	99550867	ID=Msa0901980-mRNA-1:exon:17544;Parent=Msa0901980-mRNA-1
chr6_1	exon	99551306	99551543	99551306	ID=Msa0901980-mRNA-1:exon:17545;Parent=Msa0901980-mRNA-1
chr6_1	exon	99551636	99551786	99551636	ID=Msa0901980-mRNA-1:exon:17546;Parent=Msa0901980-mRNA-1
chr6_1	exon	99551870	99552141	99551870	ID=Msa0901980-mRNA-1:exon:17547;Parent=Msa0901980-mRNA-1
chr6_1	exon	99552990	99553239	99552990	ID=Msa0901980-mRNA-1:exon:17548;Parent=Msa0901980-mRNA-1
chr6_1	CDS	99548714	99549875	99548714	ID=Msa0901980-mRNA-1:cds;Parent=Msa0901980-mRNA-1
chr6_1	CDS	99549982	99550167	99549982	ID=Msa0901980-mRNA-1:cds;Parent=Msa0901980-mRNA-1
chr6_1	CDS	99550430	99550501	99550430	ID=Msa0901980-mRNA-1:cds;Parent=Msa0901980-mRNA-1
chr6_1	CDS	99550587	99550780	99550587	ID=Msa0901980-mRNA-1:cds;Parent=Msa0901980-mRNA-1
chr6_1	CDS	99550867	99551077	99550867	ID=Msa0901980-mRNA-1:cds;Parent=Msa0901980-mRNA-1
chr6_1	CDS	99551306	99551543	99551306	ID=Msa0901980-mRNA-1:cds;Parent=Msa0901980-mRNA-1
chr6_1	CDS	99551636	99551786	99551636	ID=Msa0901980-mRNA-1:cds;Parent=Msa0901980-mRNA-1
chr6_1	CDS	99551870	99552141	99551870	ID=Msa0901980-mRNA-1:cds;Parent=Msa0901980-mRNA-1
chr6_1	CDS	99552990	99553239	99552990	ID=Msa0901980-mRNA-1:cds;Parent=Msa0901980-mRNA-1

Gene Sequence

>Msa0901980

ATGGTACTTTGTAGTGCACAAAGAAAAACTCAACTTTTGCTTCTTTTCACTTGCTTGTGGTGTACTGGTAATACTTTTATCTATGTCAAAGCAGAAAATAATGATAGTTTGAAACCAGGAGATAAGCTGAATGCCACATCCAAGCTATGTTCTAAACAAGGTAAATATTGCATGAATTTTGAAAAATTCACTGATTTTGATAACCTCGCTTATCTCAGCATATCTCCCAGAGGCAATAACTGGTATGTGTGGATAGCTAACCGAGACCAACCTGTTGACATGGATTCTGCAGTGTTATCACTGAACCAATCTGGTGTACTCATAGTAGAATCCAATATTGGGGAACCAATAATCCTATATGCTTCACCTCAACCTTTGAATAGAAGTACTACTGTGGCCACCTTGTTTGATACCGGAAACTTTGTGTTGCAAGATATTCAAAAGAACATTGTGTTGTGGCAAAGTTTTGATCATCCAACCGATAGTTTGCTCCCTGGGATGAAATTAGGTGTGAATCACAAAACTGGTCAACATTGGTCACTGGTTTCATGGATTAGTAATTCGAAACTATTAGCAGCTTCTGGTCCATTCAGGCTTGAATGGGAACCCATAAGAAGAGAATTGGTCATTAAGCATAGAGAAAAAGTTTACTGGAAAAGTGGAAAGTTGATCAGACATAATAAATTTGAGCATATAGATGAGGATAAAGAAGTTCAATACACACCTGTGTCTAATGAGAGTGAAGATTCCTTCTCATTTACACTATCAAATGATGAAGACTTTACTATATGGGCTTTAATGGGAAATGGGCAGTTGATAAACAGGAATAGGAAAGGAGATACTTTAGCAAGGGCTGATGTGTGTTACGGCTACAACACTGATAACGGGTGCCAAAAGTATGAGGACAAGCCTGCTTGCAGAAATTTTGGTGATGAATTTGAAAGCAAAATAGGTTATCCCAATATGGCAATGTTAAATGATATAGGGAATGCTAGCTATTCGATAAGTGATTGTCAAGCTATGTGTTGGAGAAACTGCAGCTGCTTTGGATTCACAAATTCTCATACCAATGGAACTGGTTGTATGTTCTTTCTATCATCAGAGGGTCATAATATGGCAGCCGGTGGTAAAGAATTTTACCTTTTGCGGAATAACATACAAGCAAATGCTACTTATAGCATAAGTGATTGCAAAGATATGTGCTGGAGTGACTGCAGCTGCTTTGGATACCAAAATTTGTATTTTAATGGAACTGGTTGTGTATTCTTGGTATCAACTAAAGGTCTTAACAGTGCAAGCAGTGGTCATGGCTTATATTACGTTCTGGTTAAGAACACCGATCACAAAGGGACTGTTCTACTAATTATTGGAGTTTCCATTCTGCTCCGAGCCTTAATGAAACGAAAACATGTGCTTCGAGAGAGGGAAAGAATGAGAATGCAGATTGAAGATCTAGAAGGTTCAAGGCGATACTCTGATGGTGATGATCTAGAAGGAAATTTAAGCCATGGAGATGACTTAAAAGTTCTTAGCTATTCATCAATAATTGTAGCAACCAATGGCTTTTCATCAGAAAACAAGTTAGGACAGGGTGGCTTTGGACCTGTTTTTAAGGGAATTCTACCTTCAGGGCAAGAAGTCGCTGTGAAGAAACTTTCAAAAACTTCTGGACAAGGAATGACGGCGTTTAGAAATGAATTAACACTCATTTGTAAGCTTCAGCATACAAATCTTGTTCAACTAATCGGTCATTGCATTCATGAACGAGAGAGAATGTTGGTCTATGAGTATATGCCCAACAAAAGCTTGGACTTCTTTTTATTTGATTCCACTAGAAGAAGGTTGCTAGATTTGAACAAACGCTTTAACATAATAGAAGGAATTGCTCAAGGATTACTATACCTTCACAAATACTCAAGACTCCGAATTATCCACAGAGATTTGAAGGCTAGTAATATTCTCCTAGATGAAAATATGAACCCAAAAATTTCTGATTTTGGCGTGGCAAGAATGTTCACAAAACAAGAAACCGAAGCAAATACCAACAGAATTGTTGGGACATATGGTTACATGTCTCCTGAGTATGCGATGGAAGGAGTCTTTTCTACAAAGTCTGATGTATACAGCTTTGGAGTCCTGCTCCTCGAAATTATTAGTGGTGAAAAATGCAATAGCATGTACTGTGAAGACAGGCCACTTAATCTAGTTGGTCATGCATGGGAGCTATGGAAAGAAGGTGTAGTTCTTCAGTTGGTGGATCCATTACTAAACGAGTCGTTTTCTGAGGATGAGGTGCTAAGATGTGTTCATGTTGGTTTATTGTGCGTAGAAGAAAATGCGGATGATCGTCCCACAATGTCCAATGTTATATCAATGTTAACAAACAAAATTAAAATGGATGTTTTGCCTAAGAAACCAGCATACTATGGTGGAACAAGAGTTTTTGATGAAGAAACGTATGGAGAAGAAGTGGGTGTGGATACCACGTATTTAATTGCTTCAGATTGTCAGATCAGCTTCGATCCAGTGCAGATCCAATCAATGACTTTGGCGCCATCCACGTTGCAGATCCGCAAACATGGTTATTCCGGAGATTTAAATGTAGTCATATGTGTAGGCATTTGTACTTTGTCTTTTTATGCTATTAACATGGATGTTGTGAGCCTTTTCACAGATTCATCCTTTTTGTTTTTAGCGAATTTGCATTATATCGATGTACTCTTTCAATTTGAATGA

Protein sequence

>Msa0901980

MVLCSAQRKTQLLLLFTCLWCTGNTFIYVKAENNDSLKPGDKLNATSKLCSKQGKYCMNFEKFTDFDNLAYLSISPRGNNWYVWIANRDQPVDMDSAVLSLNQSGVLIVESNIGEPIILYASPQPLNRSTTVATLFDTGNFVLQDIQKNIVLWQSFDHPTDSLLPGMKLGVNHKTGQHWSLVSWISNSKLLAASGPFRLEWEPIRRELVIKHREKVYWKSGKLIRHNKFEHIDEDKEVQYTPVSNESEDSFSFTLSNDEDFTIWALMGNGQLINRNRKGDTLARADVCYGYNTDNGCQKYEDKPACRNFGDEFESKIGYPNMAMLNDIGNASYSISDCQAMCWRNCSCFGFTNSHTNGTGCMFFLSSEGHNMAAGGKEFYLLRNNIQANATYSISDCKDMCWSDCSCFGYQNLYFNGTGCVFLVSTKGLNSASSGHGLYYVLVKNTDHKGTVLLIIGVSILLRALMKRKHVLRERERMRMQIEDLEGSRRYSDGDDLEGNLSHGDDLKVLSYSSIIVATNGFSSENKLGQGGFGPVFKGILPSGQEVAVKKLSKTSGQGMTAFRNELTLICKLQHTNLVQLIGHCIHERERMLVYEYMPNKSLDFFLFDSTRRRLLDLNKRFNIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDENMNPKISDFGVARMFTKQETEANTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIISGEKCNSMYCEDRPLNLVGHAWELWKEGVVLQLVDPLLNESFSEDEVLRCVHVGLLCVEENADDRPTMSNVISMLTNKIKMDVLPKKPAYYGGTRVFDEETYGEEVGVDTTYLIASDCQISFDPVQIQSMTLAPSTLQIRKHGYSGDLNVVICVGICTLSFYAINMDVVSLFTDSSFLFLANLHYIDVLFQFE*