AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0905560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905560 MtrunA17_Chr6g0453451 96.855 159 5 0 1 159 1 159 2.94e-117 334
Msa0905560 MtrunA17_Chr4g0060931 77.083 144 33 0 15 158 12 155 7.48e-83 248
Msa0905560 MtrunA17_Chr3g0091921 72.727 154 42 0 5 158 1 154 7.01e-80 238
Msa0905560 MtrunA17_Chr7g0253011 71.429 147 38 1 15 157 12 158 5.07e-76 231
Msa0905560 MtrunA17_Chr6g0461661 72.973 148 38 1 13 158 11 158 1.86e-75 229
Msa0905560 MtrunA17_Chr6g0484441 75.385 130 32 0 20 149 5 134 1.53e-73 223
Msa0905560 MtrunA17_Chr2g0316971 73.050 141 36 1 20 158 23 163 8.42e-73 223
Msa0905560 MtrunA17_Chr7g0217721 68.831 154 47 1 2 154 1 154 9.48e-73 222
Msa0905560 MtrunA17_Chr7g0217711 68.966 145 45 0 2 146 1 145 4.47e-70 209
Msa0905560 MtrunA17_Chr1g0147421 69.118 136 39 2 20 152 27 162 2.86e-66 206
Msa0905560 MtrunA17_Chr3g0144271 62.651 166 55 4 1 159 1 166 2.85e-65 205
Msa0905560 MtrunA17_Chr3g0139331 70.000 130 37 1 20 147 11 140 2.10e-63 197
Msa0905560 MtrunA17_Chr2g0312321 63.768 138 46 2 19 155 10 144 2.19e-59 186
Msa0905560 MtrunA17_Chr2g0309891 59.420 138 54 1 20 155 6 143 1.30e-55 177
Msa0905560 MtrunA17_Chr3g0124761 61.364 132 50 1 17 148 4 134 2.53e-55 175
Msa0905560 MtrunA17_Chr8g0372121 60.769 130 48 1 20 146 6 135 8.86e-55 174
Msa0905560 MtrunA17_Chr7g0252971 58.394 137 48 1 20 147 8 144 1.50e-54 175
Msa0905560 MtrunA17_Chr7g0263931 58.219 146 54 2 5 148 1 141 1.61e-54 174
Msa0905560 MtrunA17_Chr4g0018391 60.000 130 49 1 20 146 7 136 4.37e-54 174
Msa0905560 MtrunA17_Chr5g0405211 60.000 130 49 1 20 146 8 137 5.84e-54 174
Msa0905560 MtrunA17_Chr4g0017921 63.359 131 45 1 20 147 8 138 7.06e-54 173
Msa0905560 MtrunA17_Chr8g0359921 56.643 143 62 0 17 159 11 153 7.66e-54 172
Msa0905560 MtrunA17_Chr4g0042561 58.955 134 55 0 12 145 1 134 9.02e-54 171
Msa0905560 MtrunA17_Chr5g0417791 60.630 127 50 0 19 145 2 128 9.88e-54 170
Msa0905560 MtrunA17_Chr4g0056541 60.000 130 49 1 20 146 7 136 9.94e-54 173
Msa0905560 MtrunA17_Chr1g0183741 57.463 134 55 1 15 146 5 138 2.30e-53 170
Msa0905560 MtrunA17_Chr2g0318081 59.848 132 53 0 17 148 13 144 5.82e-53 171
Msa0905560 MtrunA17_Chr5g0398971 60.305 131 48 2 20 146 7 137 1.03e-52 170
Msa0905560 MtrunA17_Chr2g0318101 55.970 134 57 1 16 147 11 144 1.33e-52 170
Msa0905560 MtrunA17_Chr7g0261411 58.915 129 51 1 20 146 10 138 2.15e-52 168
Msa0905560 MtrunA17_Chr2g0326361 57.664 137 56 1 14 148 8 144 2.72e-52 169
Msa0905560 MtrunA17_Chr2g0309331 56.429 140 57 2 12 147 2 141 4.66e-52 169
Msa0905560 MtrunA17_Chr8g0384721 61.069 131 50 1 18 148 5 134 6.71e-52 166
Msa0905560 MtrunA17_Chr6g0481091 59.231 130 51 1 20 147 6 135 7.85e-52 165
Msa0905560 MtrunA17_Chr4g0047841 58.915 129 51 1 19 145 14 142 8.51e-52 168
Msa0905560 MtrunA17_Chr5g0433781 59.231 130 51 1 20 147 6 135 1.02e-51 174
Msa0905560 MtrunA17_Chr8g0346001 54.676 139 60 1 12 147 7 145 1.58e-51 169
Msa0905560 MtrunA17_Chr3g0130731 59.091 132 53 1 17 148 4 134 1.84e-51 166
Msa0905560 MtrunA17_Chr3g0109821 60.000 130 50 1 20 147 6 135 5.11e-51 172
Msa0905560 MtrunA17_Chr1g0200561 52.740 146 66 1 2 144 1 146 1.52e-50 165
Msa0905560 MtrunA17_Chr7g0214071 53.901 141 60 3 12 150 7 144 8.73e-49 157
Msa0905560 MtrunA17_Chr6g0453131 59.375 128 51 1 19 145 14 141 6.33e-48 159
Msa0905560 MtrunA17_Chr5g0417001 60.317 126 48 1 22 145 16 141 2.05e-47 158
Msa0905560 MtrunA17_Chr8g0361731 57.463 134 53 2 16 145 8 141 5.34e-47 157
Msa0905560 MtrunA17_Chr3g0128151 62.205 127 46 1 20 144 22 148 6.19e-47 160
Msa0905560 MtrunA17_Chr5g0400461 56.204 137 51 2 20 147 6 142 8.07e-47 155
Msa0905560 MtrunA17_Chr5g0428991 59.375 128 50 1 19 144 24 151 3.14e-46 159
Msa0905560 MtrunA17_Chr4g0054791 51.748 143 64 2 16 153 2 144 2.90e-45 150
Msa0905560 MtrunA17_Chr3g0128111 57.258 124 51 1 23 144 45 168 3.48e-44 145
Msa0905560 MtrunA17_Chr1g0201021 53.125 128 58 1 22 147 21 148 4.66e-44 152
Msa0905560 MtrunA17_Chr3g0113001 71.875 96 26 1 65 159 10 105 8.32e-44 146
Msa0905560 MtrunA17_Chr1g0197351 55.556 126 54 1 20 143 42 167 2.17e-43 149
Msa0905560 MtrunA17_Chr4g0076731 56.800 125 53 1 22 145 56 180 3.47e-43 147
Msa0905560 MtrunA17_Chr5g0442771 55.118 127 54 1 22 145 20 146 5.69e-43 144
Msa0905560 MtrunA17_Chr3g0130101 52.344 128 59 1 22 147 9 136 6.48e-43 145
Msa0905560 MtrunA17_Chr2g0311651 52.857 140 58 4 12 145 15 152 1.67e-42 143
Msa0905560 MtrunA17_Chr8g0364791 51.145 131 62 1 19 147 5 135 7.72e-42 144
Msa0905560 MtrunA17_Chr8g0384201 49.618 131 64 1 19 147 5 135 1.89e-41 144
Msa0905560 MtrunA17_Chr2g0311661 53.846 130 53 3 22 145 23 151 2.57e-41 139
Msa0905560 MtrunA17_Chr4g0038751 49.624 133 64 1 22 151 17 149 1.05e-40 138
Msa0905560 MtrunA17_Chr1g0197361 51.938 129 59 2 22 147 10 138 1.35e-40 143
Msa0905560 MtrunA17_Chr3g0092671 53.488 129 57 2 22 147 7 135 8.14e-40 140
Msa0905560 MtrunA17_Chr8g0345671 51.515 132 58 4 18 144 9 139 3.22e-37 131
Msa0905560 MtrunA17_Chr8g0385991 43.885 139 74 2 20 156 14 150 6.16e-37 126
Msa0905560 MtrunA17_Chr3g0131911 47.328 131 63 2 19 145 13 141 5.15e-36 124
Msa0905560 MtrunA17_Chr3g0113031 71.250 80 22 1 81 159 1 80 2.31e-34 121
Msa0905560 MtrunA17_Chr8g0345691 48.462 130 61 4 20 144 12 140 9.33e-34 122
Msa0905560 MtrunA17_Chr4g0026141 41.958 143 75 4 20 155 5 146 1.22e-31 114
Msa0905560 MtrunA17_Chr8g0345711 46.154 130 64 4 20 144 12 140 5.42e-31 109
Msa0905560 MtrunA17_Chr2g0321741 52.041 98 46 1 51 147 23 120 6.82e-31 114
Msa0905560 MtrunA17_Chr8g0345701 43.750 144 59 6 20 144 7 147 7.77e-30 107
Msa0905560 MtrunA17_Chr2g0321631 43.511 131 67 3 21 144 5 135 1.25e-29 108
Msa0905560 MtrunA17_Chr8g0345731 45.255 137 68 5 20 149 24 160 2.12e-29 105
Msa0905560 MtrunA17_Chr4g0050701 39.844 128 67 2 20 145 11 130 6.34e-26 97.4
Msa0905560 MtrunA17_Chr7g0266701 40.909 132 71 4 20 144 4 135 8.88e-26 98.6
Msa0905560 MtrunA17_Chr8g0345721 35.542 166 69 5 23 151 38 202 3.14e-25 96.3
Msa0905560 MtrunA17_Chr3g0113011 60.870 69 27 0 2 70 1 69 4.86e-24 89.0
Msa0905560 MtrunA17_Chr7g0243371 49.412 85 41 1 73 155 17 101 1.86e-23 89.0
Msa0905560 MtrunA17_Chr8g0345741 41.803 122 59 5 31 144 2 119 6.00e-23 88.6
Msa0905560 MtrunA17_Chr3g0113041 60.000 65 26 0 2 66 1 65 1.06e-21 83.2
Msa0905560 MtrunA17_Chr8g0384351 38.519 135 67 4 14 148 4 122 1.78e-20 83.2
Msa0905560 MtrunA17_Chr7g0251661 33.094 139 87 4 14 149 4 139 1.23e-19 80.1
Msa0905560 MtrunA17_Chr7g0251651 31.818 154 99 5 4 154 2 152 7.16e-19 79.3
Msa0905560 MtrunA17_Chr7g0251671 34.028 144 81 6 11 149 5 139 5.78e-17 73.6
Msa0905560 MtrunA17_Chr3g0130321 35.821 134 74 5 16 145 3 128 8.82e-15 68.6
Msa0905560 MtrunA17_Chr4g0046431 33.566 143 76 5 20 145 68 208 2.45e-14 68.9
Msa0905560 MtrunA17_Chr2g0282871 32.867 143 77 5 20 145 53 193 3.33e-14 68.6
Msa0905560 MtrunA17_Chr8g0367761 33.566 143 76 5 20 145 68 208 5.41e-14 67.4
Msa0905560 MtrunA17_Chr4g0040541 32.867 143 78 4 20 145 48 189 5.85e-14 67.4
Msa0905560 MtrunA17_Chr5g0422431 32.624 141 79 5 20 145 58 197 4.18e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905560 AT3G29035.1 78.912 147 31 0 12 158 16 162 2.49e-86 256
Msa0905560 AT5G61430.1 79.167 144 30 0 15 158 11 154 4.51e-84 250
Msa0905560 AT5G39610.1 77.551 147 33 0 12 158 12 158 2.13e-83 247
Msa0905560 AT5G07680.1 76.027 146 35 0 13 158 10 155 1.02e-81 244
Msa0905560 AT5G07680.2 77.143 140 32 0 19 158 2 141 1.76e-79 238
Msa0905560 AT5G18270.1 74.497 149 37 1 11 158 12 160 3.61e-78 235
Msa0905560 AT5G18270.2 73.826 149 38 1 11 158 12 160 7.81e-78 234
Msa0905560 AT3G04060.1 75.000 144 35 1 16 158 16 159 5.39e-76 230
Msa0905560 AT3G18400.1 79.528 127 26 0 20 146 5 131 2.14e-74 225
Msa0905560 AT5G53950.1 74.468 141 34 1 20 158 17 157 4.38e-74 226
Msa0905560 AT3G15170.1 70.213 141 40 1 20 158 20 160 9.84e-69 211
Msa0905560 AT1G76420.1 62.500 160 56 2 1 156 1 160 4.79e-68 209
Msa0905560 AT2G24430.2 62.838 148 53 1 5 150 1 148 3.84e-65 201
Msa0905560 AT2G24430.1 62.838 148 53 1 5 150 1 148 3.84e-65 201
Msa0905560 AT3G12977.1 57.241 145 61 1 2 146 1 144 3.58e-59 185
Msa0905560 AT1G56010.2 60.870 138 53 1 19 155 18 155 5.01e-58 184
Msa0905560 AT3G04070.2 54.967 151 59 2 12 155 2 150 8.16e-56 179
Msa0905560 AT3G04070.1 54.967 151 59 2 12 155 2 150 1.36e-55 178
Msa0905560 AT1G01720.1 61.654 133 50 1 16 148 3 134 6.89e-55 174
Msa0905560 AT4G10350.1 62.879 132 46 1 20 148 9 140 2.32e-54 175
Msa0905560 AT1G33280.1 62.121 132 47 1 20 148 8 139 6.28e-54 172
Msa0905560 AT4G36160.2 58.519 135 53 1 15 146 9 143 1.23e-53 174
Msa0905560 AT4G36160.1 58.519 135 53 1 15 146 5 139 1.27e-53 174
Msa0905560 AT4G36160.3 58.519 135 53 1 15 146 5 139 1.27e-53 174
Msa0905560 AT4G27410.2 60.465 129 51 0 17 145 11 139 1.36e-53 171
Msa0905560 AT5G66300.1 57.037 135 55 1 12 143 4 138 3.58e-53 170
Msa0905560 AT3G17730.1 60.000 130 50 1 20 147 6 135 4.61e-53 169
Msa0905560 AT2G18060.3 56.522 138 57 1 12 146 1 138 5.22e-53 172
Msa0905560 AT2G18060.1 56.522 138 57 1 12 146 1 138 5.22e-53 172
Msa0905560 AT1G12260.2 60.769 130 48 1 20 146 7 136 8.35e-53 171
Msa0905560 AT5G62380.2 58.462 130 51 1 20 146 7 136 1.14e-52 171
Msa0905560 AT5G62380.1 58.462 130 51 1 20 146 7 136 1.14e-52 171
Msa0905560 AT1G12260.1 60.769 130 48 1 20 146 7 136 1.81e-52 171
Msa0905560 AT2G46770.1 53.425 146 65 1 5 147 1 146 2.04e-52 170
Msa0905560 AT1G69490.1 54.745 137 62 0 12 148 1 137 2.19e-52 167
Msa0905560 AT1G77450.1 58.394 137 56 1 12 148 2 137 2.29e-52 167
Msa0905560 AT1G71930.2 56.061 132 55 1 20 148 9 140 3.73e-52 169
Msa0905560 AT1G71930.1 56.061 132 55 1 20 148 9 140 3.73e-52 169
Msa0905560 AT1G62700.1 58.647 133 52 1 19 148 6 138 8.84e-52 169
Msa0905560 AT1G62700.2 58.647 133 52 1 19 148 6 138 8.84e-52 169
Msa0905560 AT3G03200.1 58.741 143 51 2 20 154 6 148 9.63e-52 171
Msa0905560 AT1G61110.1 58.462 130 53 1 19 147 15 144 1.53e-51 167
Msa0905560 AT3G15500.1 59.690 129 52 0 17 145 11 139 1.91e-51 166
Msa0905560 AT3G10490.1 58.088 136 55 1 20 153 27 162 2.89e-51 164
Msa0905560 AT1G32770.1 53.741 147 65 1 5 148 1 147 3.82e-51 167
Msa0905560 AT3G61910.1 52.482 141 64 1 11 148 2 142 4.06e-51 166
Msa0905560 AT1G65910.1 59.231 130 51 1 20 147 6 135 5.47e-51 172
Msa0905560 AT2G33480.1 54.861 144 61 2 5 148 1 140 6.31e-51 164
Msa0905560 AT5G08790.1 56.738 141 60 1 17 157 4 143 6.57e-51 164
Msa0905560 AT2G33480.2 54.861 144 61 2 5 148 1 140 7.42e-51 164
Msa0905560 AT5G17260.1 60.305 131 50 1 20 148 6 136 8.76e-51 169
Msa0905560 AT1G52890.1 59.690 129 52 0 17 145 11 139 8.85e-51 165
Msa0905560 AT1G33060.1 60.769 130 49 1 20 147 24 153 9.24e-51 172
Msa0905560 AT1G33060.2 60.769 130 49 1 20 147 24 153 1.09e-50 171
Msa0905560 AT5G39820.1 57.143 147 58 3 1 145 4 147 2.84e-50 164
Msa0905560 AT5G61430.2 82.222 90 16 0 69 158 2 91 4.32e-50 162
Msa0905560 AT3G10490.2 60.938 128 48 1 20 145 27 154 6.87e-50 166
Msa0905560 AT4G28530.1 54.795 146 48 2 19 146 9 154 8.21e-50 163
Msa0905560 AT4G35580.1 61.417 127 47 1 20 144 9 135 8.24e-50 167
Msa0905560 AT1G79580.3 53.793 145 63 2 8 148 5 149 9.88e-50 164
Msa0905560 AT1G79580.5 53.793 145 63 2 8 148 5 149 9.88e-50 164
Msa0905560 AT1G79580.4 53.793 145 63 2 8 148 5 149 9.88e-50 164
Msa0905560 AT1G79580.2 53.793 145 63 2 8 148 5 149 9.88e-50 164
Msa0905560 AT1G79580.1 53.793 145 63 2 8 148 5 149 9.88e-50 164
Msa0905560 AT4G35580.3 61.417 127 47 1 20 144 9 135 1.01e-49 167
Msa0905560 AT4G35580.2 61.417 127 47 1 20 144 9 135 1.12e-49 167
Msa0905560 AT3G10480.2 60.938 128 48 1 20 145 27 154 1.26e-49 165
Msa0905560 AT3G10480.1 60.938 128 48 1 20 145 27 154 1.27e-49 165
Msa0905560 AT3G10500.1 58.462 130 52 1 20 147 9 138 1.45e-49 167
Msa0905560 AT5G46590.2 57.353 136 55 2 20 152 6 141 1.78e-49 160
Msa0905560 AT5G46590.1 57.353 136 55 2 20 152 6 141 2.75e-49 160
Msa0905560 AT1G54330.1 61.719 128 47 1 20 145 6 133 3.12e-49 160
Msa0905560 AT1G26870.1 58.273 139 54 2 10 144 4 142 3.73e-49 163
Msa0905560 AT4G27410.3 53.425 146 51 1 17 145 11 156 4.53e-49 160
Msa0905560 AT5G04410.1 59.231 130 51 1 20 147 9 138 4.74e-49 166
Msa0905560 AT5G63790.1 55.319 141 62 1 17 157 47 186 1.40e-48 159
Msa0905560 AT5G63790.2 55.319 141 62 1 17 157 57 196 1.62e-48 159
Msa0905560 AT2G43000.1 51.020 147 71 1 13 158 10 156 3.21e-48 157
Msa0905560 AT5G13180.1 56.154 130 52 3 18 145 12 138 6.93e-47 153
Msa0905560 AT4G17980.1 56.818 132 53 2 20 147 6 137 7.98e-47 153
Msa0905560 AT3G15510.1 55.645 124 53 1 24 145 21 144 1.21e-46 155
Msa0905560 AT4G17980.2 56.818 132 53 2 20 147 6 137 1.62e-46 153
Msa0905560 AT3G12910.1 53.846 143 59 4 8 145 10 150 6.04e-45 149
Msa0905560 AT2G02450.1 57.600 125 52 1 22 145 53 177 3.15e-44 149
Msa0905560 AT2G02450.2 57.600 125 52 1 22 145 53 177 4.72e-44 150
Msa0905560 AT3G49530.2 55.072 138 58 3 20 153 13 150 1.09e-43 149
Msa0905560 AT5G24590.2 54.930 142 56 3 20 153 13 154 1.51e-43 149
Msa0905560 AT3G10480.3 48.447 161 48 1 20 145 27 187 2.20e-43 150
Msa0905560 AT2G17040.1 51.880 133 61 1 22 151 8 140 2.34e-43 144
Msa0905560 AT3G49530.1 55.072 138 58 3 20 153 13 150 2.48e-43 149
Msa0905560 AT1G34180.3 50.781 128 61 1 22 147 18 145 5.38e-43 148
Msa0905560 AT1G52880.1 53.906 128 55 1 24 147 21 148 1.11e-42 144
Msa0905560 AT5G09330.5 48.551 138 69 1 17 152 3 140 1.16e-42 147
Msa0905560 AT5G09330.2 48.551 138 69 1 17 152 3 140 1.16e-42 147
Msa0905560 AT5G09330.4 48.551 138 69 1 17 152 3 140 1.16e-42 147
Msa0905560 AT5G09330.3 48.551 138 69 1 17 152 3 140 1.16e-42 147
Msa0905560 AT5G09330.1 48.551 138 69 1 17 152 3 140 1.16e-42 147
Msa0905560 AT5G64060.1 47.101 138 71 1 17 152 3 140 1.68e-42 144
Msa0905560 AT1G34180.1 50.781 128 61 1 22 147 18 145 4.79e-42 147
Msa0905560 AT2G27300.1 50.400 125 61 1 20 143 14 138 6.14e-42 142
Msa0905560 AT1G34190.1 50.000 128 62 1 22 147 18 145 1.15e-41 146
Msa0905560 AT1G34180.4 46.429 140 61 1 22 147 18 157 8.43e-41 142
Msa0905560 AT1G34180.2 46.429 140 61 1 22 147 18 157 3.49e-40 142
Msa0905560 AT1G32510.1 50.000 142 62 2 20 152 6 147 4.35e-40 136
Msa0905560 AT1G32870.1 52.985 134 59 2 14 145 4 135 1.35e-38 137
Msa0905560 AT1G32870.2 52.985 134 59 2 14 145 4 135 1.43e-38 137
Msa0905560 AT1G32870.3 52.985 134 59 2 14 145 40 171 1.51e-38 137
Msa0905560 AT5G22290.1 48.780 123 62 1 22 143 23 145 1.75e-38 134
Msa0905560 AT3G44290.2 46.763 139 67 2 22 159 16 148 1.45e-37 128
Msa0905560 AT5G04395.1 46.154 143 61 2 19 145 27 169 2.78e-37 126
Msa0905560 AT3G44290.1 46.763 139 67 2 22 159 16 148 1.09e-36 129
Msa0905560 AT1G56010.1 65.517 87 30 0 69 155 2 88 1.10e-36 127
Msa0905560 AT3G12977.2 69.231 78 24 0 69 146 14 91 3.92e-36 125
Msa0905560 AT4G10350.2 69.737 76 23 0 73 148 18 93 3.63e-33 119
Msa0905560 AT4G28530.2 48.837 129 48 2 19 129 9 137 1.29e-32 118
Msa0905560 AT2G33480.3 61.842 76 29 0 73 148 8 83 3.00e-30 109
Msa0905560 AT3G44350.1 39.583 144 81 3 19 156 4 147 4.04e-27 100
Msa0905560 AT4G01550.1 43.411 129 67 3 23 145 7 135 6.25e-27 105
Msa0905560 AT4G01520.1 39.394 132 73 4 21 145 5 136 1.55e-26 102
Msa0905560 AT3G44350.2 39.583 144 81 3 19 156 4 147 2.01e-26 100
Msa0905560 AT4G01540.4 41.985 131 67 5 23 145 7 136 1.06e-25 100
Msa0905560 AT4G01540.2 40.769 130 70 4 23 145 7 136 1.10e-25 101
Msa0905560 AT1G02230.1 40.288 139 73 5 21 152 4 139 1.13e-25 100
Msa0905560 AT4G01540.1 40.769 130 70 4 23 145 7 136 1.54e-25 101
Msa0905560 AT5G22380.1 40.441 136 74 4 19 147 4 139 1.98e-25 97.4
Msa0905560 AT4G01540.3 41.985 131 67 5 23 145 7 136 2.20e-25 100
Msa0905560 AT5G64530.2 39.231 130 65 3 20 147 3 120 3.68e-25 94.7
Msa0905560 AT5G64530.1 39.231 130 65 3 20 147 3 120 1.41e-24 94.4
Msa0905560 AT3G04420.2 38.462 130 76 2 18 143 1 130 2.55e-24 95.9
Msa0905560 AT3G04420.1 38.462 130 76 2 18 143 1 130 4.48e-24 95.9
Msa0905560 AT3G10490.4 73.585 53 14 0 93 145 2 54 4.41e-22 90.9
Msa0905560 AT3G10490.3 73.585 53 14 0 93 145 2 54 4.41e-22 90.9
Msa0905560 AT1G02250.1 39.286 140 73 5 21 153 4 138 9.42e-22 90.1
Msa0905560 AT1G01010.1 36.232 138 70 5 23 146 6 139 1.54e-21 90.1
Msa0905560 AT2G43000.2 48.718 78 40 0 81 158 1 78 2.95e-20 83.2
Msa0905560 AT1G02220.1 36.923 130 75 3 18 143 1 127 5.57e-20 85.5
Msa0905560 AT2G18060.2 69.388 49 15 0 98 146 2 50 1.16e-19 83.2
Msa0905560 AT5G50820.1 37.956 137 59 7 20 145 17 138 1.53e-18 78.6
Msa0905560 AT5G14000.2 34.884 129 80 2 19 145 14 140 7.32e-18 75.9
Msa0905560 AT5G14000.1 34.884 129 80 2 19 145 14 140 2.46e-17 75.9
Msa0905560 AT3G56530.1 30.435 138 93 2 14 148 46 183 6.23e-17 76.3
Msa0905560 AT5G22290.2 60.000 45 18 0 99 143 2 46 1.96e-14 68.6
Msa0905560 AT1G28470.1 34.266 143 75 6 20 145 77 217 1.54e-13 67.0
Msa0905560 AT3G04430.1 32.824 131 76 3 26 144 6 136 4.03e-13 64.3
Msa0905560 AT3G55210.1 28.966 145 89 3 18 148 9 153 1.70e-12 63.9
Msa0905560 AT5G56620.3 31.373 153 77 4 20 145 43 194 1.07e-11 62.0
Msa0905560 AT5G56620.2 31.373 153 77 4 20 145 43 194 1.28e-11 62.0
Msa0905560 AT5G56620.1 31.373 153 77 4 20 145 43 194 1.46e-11 61.6

Find 28 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATTGCCACCTGGATTT+AGG 0.205368 6_2:-3728626 Msa0905560:CDS
AAAACTCACCATAGCTCTTT+TGG 0.230831 6_2:+3727944 None:intergenic
CAACTGGTCTAAGGACAAAT+AGG 0.295570 6_2:-3728148 Msa0905560:CDS
TATAGAGAGAAGATCCTAAT+TGG 0.297643 6_2:-3728077 Msa0905560:CDS
GGGCCACATGTGCTGGATAT+TGG 0.304387 6_2:-3728127 Msa0905560:CDS
TTGTGTAGGGAGGGCCAATA+TGG 0.306694 6_2:-3728216 Msa0905560:intron
GAAAATATCCAACTGGTCTA+AGG 0.347016 6_2:-3728157 Msa0905560:CDS
TAGAATATGTGTCTTCTAAT+CGG 0.393158 6_2:+3727979 None:intergenic
ACAAATAGGGCCACATGTGC+TGG 0.425347 6_2:-3728134 Msa0905560:CDS
CTATTTGTCCTTAGACCAGT+TGG 0.456676 6_2:+3728149 None:intergenic
AACTGGTCTAAGGACAAATA+GGG 0.472128 6_2:-3728147 Msa0905560:CDS
TTTGAACAAGTGTGAACCTT+GGG 0.484109 6_2:-3728511 Msa0905560:CDS
GCTGGATATTGGAAGGCAAC+AGG 0.490181 6_2:-3728116 Msa0905560:CDS
GAGGGCCAATATGGGTGAAA+AGG 0.519049 6_2:-3728207 Msa0905560:CDS
GTTATGAGTTCTTCATCTGT+TGG 0.527445 6_2:+3728597 None:intergenic
AGGGACAGAAAATATCCAAC+TGG 0.530281 6_2:-3728164 Msa0905560:CDS
ATTAATTATGATGGATGCAA+TGG 0.548436 6_2:-3728685 None:intergenic
TACAAAGGAAGAGCTCCTAA+AGG 0.554352 6_2:-3728032 Msa0905560:CDS
TGTGTAGGGAGGGCCAATAT+GGG 0.558995 6_2:-3728215 Msa0905560:intron
GTTGGATGAAACCTAAATCC+AGG 0.563929 6_2:+3728615 None:intergenic
AAATGTATCCAAAAGAGCTA+TGG 0.569420 6_2:-3727952 None:intergenic
CTTCCAATATCCAGCACATG+TGG 0.571320 6_2:+3728124 None:intergenic
CACATGTGCTGGATATTGGA+AGG 0.589625 6_2:-3728123 Msa0905560:CDS
GTTCAAATCAGCTTCACCAA+TGG 0.595043 6_2:+3728527 None:intergenic
ATTTGAACAAGTGTGAACCT+TGG 0.620030 6_2:-3728512 Msa0905560:CDS
TACTTACAAGGCAAATCCCA+AGG 0.621454 6_2:+3728495 None:intergenic
CCAATATGGGTGAAAAGGAG+TGG 0.638048 6_2:-3728202 Msa0905560:CDS
GGATGAAACCTAAATCCAGG+TGG 0.732405 6_2:+3728618 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAGAGAAAAAAAAA+TGG + chr6_2:3728184-3728203 None:intergenic 10.0%
!!! TTTTTTAAGAGAAAAAAAAA+TGG + chr6_2:3728184-3728203 None:intergenic 10.0%
!!! TATTTTTTCTTAATTGTGTA+GGG - chr6_2:3728402-3728421 Msa0905560:intron 15.0%
!!! TATTTTTTCTTAATTGTGTA+GGG - chr6_2:3728402-3728421 Msa0905560:intron 15.0%
!! AGAAAAAAAAATGGAATCAA+AGG + chr6_2:3728175-3728194 None:intergenic 20.0%
!!! TTAGTATCGAGTTTTTAAAT+CGG - chr6_2:3728207-3728226 Msa0905560:CDS 20.0%
!!! CTATTTTTTCTTAATTGTGT+AGG - chr6_2:3728401-3728420 Msa0905560:intron 20.0%
!! TAAAGGTGAAAAAACAAATT+GGG - chr6_2:3728616-3728635 Msa0905560:CDS 20.0%
!! AGAAAAAAAAATGGAATCAA+AGG + chr6_2:3728175-3728194 None:intergenic 20.0%
!!! TTAGTATCGAGTTTTTAAAT+CGG - chr6_2:3728207-3728226 Msa0905560:CDS 20.0%
!!! CTATTTTTTCTTAATTGTGT+AGG - chr6_2:3728401-3728420 Msa0905560:intron 20.0%
!! TAAAGGTGAAAAAACAAATT+GGG - chr6_2:3728616-3728635 Msa0905560:CDS 20.0%
!!! TATTAAGAACTTTTTGAGAG+AGG + chr6_2:3728066-3728085 None:intergenic 25.0%
! AATGAGAAGAAATACTTACA+AGG + chr6_2:3728151-3728170 None:intergenic 25.0%
!!! AAAACACTTGTTTTCTACAA+AGG - chr6_2:3728584-3728603 Msa0905560:CDS 25.0%
!!! CAATTTGTTTTTTCACCTTT+AGG + chr6_2:3728617-3728636 None:intergenic 25.0%
! CTAAAGGTGAAAAAACAAAT+TGG - chr6_2:3728615-3728634 Msa0905560:CDS 25.0%
! TAGAATATGTGTCTTCTAAT+CGG + chr6_2:3728655-3728674 None:intergenic 25.0%
!!! TATTAAGAACTTTTTGAGAG+AGG + chr6_2:3728066-3728085 None:intergenic 25.0%
! AATGAGAAGAAATACTTACA+AGG + chr6_2:3728151-3728170 None:intergenic 25.0%
!!! AAAACACTTGTTTTCTACAA+AGG - chr6_2:3728584-3728603 Msa0905560:CDS 25.0%
!!! CAATTTGTTTTTTCACCTTT+AGG + chr6_2:3728617-3728636 None:intergenic 25.0%
! CTAAAGGTGAAAAAACAAAT+TGG - chr6_2:3728615-3728634 Msa0905560:CDS 25.0%
! TAGAATATGTGTCTTCTAAT+CGG + chr6_2:3728655-3728674 None:intergenic 25.0%
! TTTTTCTTAATTGTGTAGGG+AGG - chr6_2:3728405-3728424 Msa0905560:intron 30.0%
! TTTTCTTAATTGTGTAGGGA+GGG - chr6_2:3728406-3728425 Msa0905560:intron 30.0%
TATAGAGAGAAGATCCTAAT+TGG - chr6_2:3728554-3728573 Msa0905560:CDS 30.0%
! GTGTTTTCTTCATTCCAATT+AGG + chr6_2:3728571-3728590 None:intergenic 30.0%
! TTTTTCTTAATTGTGTAGGG+AGG - chr6_2:3728405-3728424 Msa0905560:intron 30.0%
! TTTTCTTAATTGTGTAGGGA+GGG - chr6_2:3728406-3728425 Msa0905560:intron 30.0%
TATAGAGAGAAGATCCTAAT+TGG - chr6_2:3728554-3728573 Msa0905560:CDS 30.0%
! GTGTTTTCTTCATTCCAATT+AGG + chr6_2:3728571-3728590 None:intergenic 30.0%
GAAAAATTTGAATTGCCACC+TGG - chr6_2:3727998-3728017 Msa0905560:CDS 35.0%
GTTATGAGTTCTTCATCTGT+TGG + chr6_2:3728037-3728056 None:intergenic 35.0%
! TCTTTTTGTGCTATAGCCAT+TGG - chr6_2:3728088-3728107 Msa0905560:CDS 35.0%
ATTTGAACAAGTGTGAACCT+TGG - chr6_2:3728119-3728138 Msa0905560:CDS 35.0%
TTTGAACAAGTGTGAACCTT+GGG - chr6_2:3728120-3728139 Msa0905560:CDS 35.0%
!!! AGTGGTATTTTTTCTGTGTG+AGG - chr6_2:3728447-3728466 Msa0905560:intron 35.0%
!!! GTGGTATTTTTTCTGTGTGA+GGG - chr6_2:3728448-3728467 Msa0905560:intron 35.0%
! GAAAATATCCAACTGGTCTA+AGG - chr6_2:3728474-3728493 Msa0905560:intron 35.0%
! AACTGGTCTAAGGACAAATA+GGG - chr6_2:3728484-3728503 Msa0905560:intron 35.0%
GAAAAATTTGAATTGCCACC+TGG - chr6_2:3727998-3728017 Msa0905560:CDS 35.0%
GTTATGAGTTCTTCATCTGT+TGG + chr6_2:3728037-3728056 None:intergenic 35.0%
! TCTTTTTGTGCTATAGCCAT+TGG - chr6_2:3728088-3728107 Msa0905560:CDS 35.0%
ATTTGAACAAGTGTGAACCT+TGG - chr6_2:3728119-3728138 Msa0905560:CDS 35.0%
TTTGAACAAGTGTGAACCTT+GGG - chr6_2:3728120-3728139 Msa0905560:CDS 35.0%
!!! AGTGGTATTTTTTCTGTGTG+AGG - chr6_2:3728447-3728466 Msa0905560:intron 35.0%
!!! GTGGTATTTTTTCTGTGTGA+GGG - chr6_2:3728448-3728467 Msa0905560:intron 35.0%
! GAAAATATCCAACTGGTCTA+AGG - chr6_2:3728474-3728493 Msa0905560:intron 35.0%
! AACTGGTCTAAGGACAAATA+GGG - chr6_2:3728484-3728503 Msa0905560:intron 35.0%
TTGAATTGCCACCTGGATTT+AGG - chr6_2:3728005-3728024 Msa0905560:CDS 40.0%
GTTGGATGAAACCTAAATCC+AGG + chr6_2:3728019-3728038 None:intergenic 40.0%
GTTCAAATCAGCTTCACCAA+TGG + chr6_2:3728107-3728126 None:intergenic 40.0%
TACTTACAAGGCAAATCCCA+AGG + chr6_2:3728139-3728158 None:intergenic 40.0%
AGGGACAGAAAATATCCAAC+TGG - chr6_2:3728467-3728486 Msa0905560:intron 40.0%
CTATTTGTCCTTAGACCAGT+TGG + chr6_2:3728485-3728504 None:intergenic 40.0%
! CAACTGGTCTAAGGACAAAT+AGG - chr6_2:3728483-3728502 Msa0905560:intron 40.0%
TACAAAGGAAGAGCTCCTAA+AGG - chr6_2:3728599-3728618 Msa0905560:CDS 40.0%
TTGAATTGCCACCTGGATTT+AGG - chr6_2:3728005-3728024 Msa0905560:CDS 40.0%
GTTGGATGAAACCTAAATCC+AGG + chr6_2:3728019-3728038 None:intergenic 40.0%
GTTCAAATCAGCTTCACCAA+TGG + chr6_2:3728107-3728126 None:intergenic 40.0%
TACTTACAAGGCAAATCCCA+AGG + chr6_2:3728139-3728158 None:intergenic 40.0%
AGGGACAGAAAATATCCAAC+TGG - chr6_2:3728467-3728486 Msa0905560:intron 40.0%
CTATTTGTCCTTAGACCAGT+TGG + chr6_2:3728485-3728504 None:intergenic 40.0%
! CAACTGGTCTAAGGACAAAT+AGG - chr6_2:3728483-3728502 Msa0905560:intron 40.0%
TACAAAGGAAGAGCTCCTAA+AGG - chr6_2:3728599-3728618 Msa0905560:CDS 40.0%
GGATGAAACCTAAATCCAGG+TGG + chr6_2:3728016-3728035 None:intergenic 45.0%
GGTATGCAATCGTGACATCA+AGG - chr6_2:3728228-3728247 Msa0905560:intron 45.0%
! CCACTCCTTTTCACCCATAT+TGG + chr6_2:3728432-3728451 None:intergenic 45.0%
CCAATATGGGTGAAAAGGAG+TGG - chr6_2:3728429-3728448 Msa0905560:intron 45.0%
CTTCCAATATCCAGCACATG+TGG + chr6_2:3728510-3728529 None:intergenic 45.0%
CACATGTGCTGGATATTGGA+AGG - chr6_2:3728508-3728527 Msa0905560:CDS 45.0%
GGATGAAACCTAAATCCAGG+TGG + chr6_2:3728016-3728035 None:intergenic 45.0%
GGTATGCAATCGTGACATCA+AGG - chr6_2:3728228-3728247 Msa0905560:intron 45.0%
! CCACTCCTTTTCACCCATAT+TGG + chr6_2:3728432-3728451 None:intergenic 45.0%
CCAATATGGGTGAAAAGGAG+TGG - chr6_2:3728429-3728448 Msa0905560:intron 45.0%
CTTCCAATATCCAGCACATG+TGG + chr6_2:3728510-3728529 None:intergenic 45.0%
CACATGTGCTGGATATTGGA+AGG - chr6_2:3728508-3728527 Msa0905560:CDS 45.0%
TTGTGTAGGGAGGGCCAATA+TGG - chr6_2:3728415-3728434 Msa0905560:intron 50.0%
TGTGTAGGGAGGGCCAATAT+GGG - chr6_2:3728416-3728435 Msa0905560:intron 50.0%
GAGGGCCAATATGGGTGAAA+AGG - chr6_2:3728424-3728443 Msa0905560:intron 50.0%
ACAAATAGGGCCACATGTGC+TGG - chr6_2:3728497-3728516 Msa0905560:intron 50.0%
GCTGGATATTGGAAGGCAAC+AGG - chr6_2:3728515-3728534 Msa0905560:CDS 50.0%
TTGTGTAGGGAGGGCCAATA+TGG - chr6_2:3728415-3728434 Msa0905560:intron 50.0%
TGTGTAGGGAGGGCCAATAT+GGG - chr6_2:3728416-3728435 Msa0905560:intron 50.0%
GAGGGCCAATATGGGTGAAA+AGG - chr6_2:3728424-3728443 Msa0905560:intron 50.0%
ACAAATAGGGCCACATGTGC+TGG - chr6_2:3728497-3728516 Msa0905560:intron 50.0%
GCTGGATATTGGAAGGCAAC+AGG - chr6_2:3728515-3728534 Msa0905560:CDS 50.0%
GGGCCACATGTGCTGGATAT+TGG - chr6_2:3728504-3728523 Msa0905560:CDS 55.0%
GGGCCACATGTGCTGGATAT+TGG - chr6_2:3728504-3728523 Msa0905560:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 3727953 3728700 3727953 ID=Msa0905560;Name=Msa0905560
chr6_2 mRNA 3727953 3728700 3727953 ID=Msa0905560-mRNA-1;Parent=Msa0905560;Name=Msa0905560-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|2|0|159
chr6_2 exon 3728502 3728700 3728502 ID=Msa0905560-mRNA-1:exon:1150;Parent=Msa0905560-mRNA-1
chr6_2 exon 3727953 3728230 3727953 ID=Msa0905560-mRNA-1:exon:1149;Parent=Msa0905560-mRNA-1
chr6_2 CDS 3728502 3728700 3728502 ID=Msa0905560-mRNA-1:cds;Parent=Msa0905560-mRNA-1
chr6_2 CDS 3727953 3728230 3727953 ID=Msa0905560-mRNA-1:cds;Parent=Msa0905560-mRNA-1
Gene Sequence

>Msa0905560

ATGATGGATGCAATGGAGAAAAATTCAAGAAATGTTGAGAGTGATGAAAAATTTGAATTGCCACCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACTCATTACCTCTCTCAAAAAGTTCTTAATAATTCTTTTTGTGCTATAGCCATTGGTGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTGCCTTGGAGGGCCAATATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATATCCAACTGGTCTAAGGACAAATAGGGCCACATGTGCTGGATATTGGAAGGCAACAGGTAAAGACAAAGAGATATATAGAGAGAAGATCCTAATTGGAATGAAGAAAACACTTGTTTTCTACAAAGGAAGAGCTCCTAAAGGTGAAAAAACAAATTGGGTCATGCATGAATTCCGATTAGAAGACACATATTCTATGCAAAATGTATCCAAAAGAGCTATG
Protein sequence

>Msa0905560

MMDAMEKNSRNVESDEKFELPPGFRFHPTDEELITHYLSQKVLNNSFCAIAIGEADLNKCEPWDLPWRANMGEKEWYFFCVRDRKYPTGLRTNRATCAGYWKATGKDKEIYREKILIGMKKTLVFYKGRAPKGEKTNWVMHEFRLEDTYSMQNVSKRAM