AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907250 MtrunA17_Chr5g0442341 75.610 205 11 2 38 203 46 250 1.38e-102 305
Msa0907250 MtrunA17_Chr3g0095231 68.342 199 24 2 44 203 52 250 5.94e-89 270
Msa0907250 MtrunA17_Chr3g0109701 53.153 222 64 3 21 202 28 249 1.06e-69 220
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907250 AT2G43020.1 64.322 199 32 2 44 203 52 250 3.26e-83 255
Msa0907250 AT3G59050.1 63.131 198 34 2 44 202 53 250 2.15e-79 245
Msa0907250 AT1G65840.1 51.376 218 64 3 25 203 37 251 9.39e-70 221

Find 58 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTCCATTGATTGGGAGGC+TGG 0.279036 6_2:+5845873 Msa0907250:CDS
GCTAATAATGACCTCAGTTC+TGG 0.323376 6_2:-5846391 None:intergenic
ATTCACACTGATTACTCATT+TGG 0.325638 6_2:+5845691 Msa0907250:CDS
AATCCTCTGGCTCCATTGAT+TGG 0.348932 6_2:+5845865 Msa0907250:CDS
ACAACTCTCAATACAAATAA+AGG 0.356472 6_2:-5845602 None:intergenic
AAAGATAGTAGGGGATATAA+TGG 0.395272 6_2:+5847288 Msa0907250:CDS
GTTGGAGGGGCTTTCACATA+AGG 0.402309 6_2:+5846499 Msa0907250:CDS
TGTCCTATACGATCATGATT+TGG 0.402825 6_2:+5845930 Msa0907250:CDS
TTGGCTAGGGTATGTATAAC+AGG 0.405023 6_2:-5847141 None:intergenic
CAAGGGTCTTGACATTCGGC+TGG 0.431094 6_2:+5847161 Msa0907250:CDS
ATCCTCTGGCTCCATTGATT+GGG 0.431803 6_2:+5845866 Msa0907250:CDS
AATTGAAAGTGCACGAAGAA+TGG 0.438137 6_2:-5846353 None:intergenic
TTTCCAAATCATGATCGTAT+AGG 0.448434 6_2:-5845933 None:intergenic
CATGATGCACCTAGGTCAAC+AGG 0.448585 6_2:-5845718 None:intergenic
GAATGGAGGGCTTTCACATA+AGG 0.459089 6_2:+5846543 Msa0907250:CDS
TTCAGGGCGACAAAGATAGT+AGG 0.459550 6_2:+5847277 Msa0907250:intron
GCTCCATTGATTGGGAGGCT+GGG 0.462828 6_2:+5845874 Msa0907250:CDS
TTGACATTCGGCTGGGGCAC+AGG 0.462919 6_2:+5847169 Msa0907250:CDS
CATTATTGGATGCAGGTTGG+AGG 0.468941 6_2:+5846484 Msa0907250:intron
ATTATTGGATGCAGGTTGGA+GGG 0.474950 6_2:+5846485 Msa0907250:intron
TTCTGCCACCAAGTCTATCC+CGG 0.493984 6_2:-5845669 None:intergenic
AGTCCCAGCCTCCCAATCAA+TGG 0.497011 6_2:-5845877 None:intergenic
AATGTTTAAATGAGAAGAAG+AGG 0.504879 6_2:-5845557 None:intergenic
CTGTTGACCTAGGTGCATCA+TGG 0.509864 6_2:+5845719 Msa0907250:CDS
TAGCCAAGGGTCTTGACATT+CGG 0.512251 6_2:+5847157 Msa0907250:CDS
CTCTGGCTCCATTGATTGGG+AGG 0.513671 6_2:+5845869 Msa0907250:CDS
TCAGTGGTATTTATGCAGAA+TGG 0.515557 6_2:+5846526 Msa0907250:CDS
TTATTGGATGCAGGTTGGAG+GGG 0.515630 6_2:+5846486 Msa0907250:intron
TCAGGGCGACAAAGATAGTA+GGG 0.520952 6_2:+5847278 Msa0907250:intron
CAGCCGAATGTCAAGACCCT+TGG 0.525666 6_2:-5847160 None:intergenic
GAATCAAGTTCCACAAGAGT+TGG 0.536968 6_2:+5846147 Msa0907250:CDS
AAGGGTCTTGACATTCGGCT+GGG 0.542089 6_2:+5847162 Msa0907250:CDS
TTAGAATCCCGGGATAGACT+TGG 0.547928 6_2:+5845661 Msa0907250:CDS
AGGGTCTTGACATTCGGCTG+GGG 0.550051 6_2:+5847163 Msa0907250:CDS
GAATGTCAAGACCCTTGGCT+AGG 0.558837 6_2:-5847155 None:intergenic
GAATCCCGGGATAGACTTGG+TGG 0.558858 6_2:+5845664 Msa0907250:CDS
GAGCTGATAGATACAAAAGT+AGG 0.563910 6_2:-5845580 None:intergenic
GCAGACAGATAATGTACGAC+AGG 0.565366 6_2:+5846312 Msa0907250:intron
CAGAGTTATCCTCACAAGTA+CGG 0.566480 6_2:-5845909 None:intergenic
TCCTCACAAGTACGGTAAAG+AGG 0.571437 6_2:-5845901 None:intergenic
AATGTCAAGACCCTTGGCTA+GGG 0.571742 6_2:-5847154 None:intergenic
TAGGGGATATAATGGAGTGA+AGG 0.574474 6_2:+5847296 Msa0907250:CDS
CTAGGGTATGTATAACAGGC+AGG 0.584240 6_2:-5847137 None:intergenic
ACCTCTTTACCGTACTTGTG+AGG 0.587430 6_2:+5845900 Msa0907250:CDS
TTTCACATAAGGTGCTTCAG+TGG 0.588427 6_2:+5846510 Msa0907250:CDS
GTGGTATTTATGCAGAATGG+AGG 0.590217 6_2:+5846529 Msa0907250:CDS
TCTGCCACCAAGTCTATCCC+GGG 0.596007 6_2:-5845668 None:intergenic
TGTTATACATACCCTAGCCA+AGG 0.597299 6_2:+5847143 Msa0907250:CDS
TGGTATTTATGCAGAATGGA+GGG 0.601193 6_2:+5846530 Msa0907250:CDS
TATACGATCATGATTTGGAA+AGG 0.602711 6_2:+5845935 Msa0907250:CDS
CTCCCAATCAATGGAGCCAG+AGG 0.605374 6_2:-5845868 None:intergenic
TGATTATGATTCAGGTTGCA+TGG 0.611159 6_2:+5845829 Msa0907250:intron
AGTTTGCAATGAGAATCCTC+TGG 0.615479 6_2:+5845852 Msa0907250:CDS
ACTTATGTAACCAACTCTTG+TGG 0.615750 6_2:-5846157 None:intergenic
ATCTTTACCATGATGCACCT+AGG 0.655995 6_2:-5845726 None:intergenic
TTGAAAGAAAGCCAGAACTG+AGG 0.657435 6_2:+5846380 Msa0907250:CDS
CAGGGCGACAAAGATAGTAG+GGG 0.670082 6_2:+5847279 Msa0907250:intron
GTTATACATACCCTAGCCAA+GGG 0.684397 6_2:+5847144 Msa0907250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAATTAAAGGAGA+TGG - chr6_2:5845536-5845555 None:intergenic 15.0%
!! AGAGGAAAAAAAATAATTAA+AGG - chr6_2:5845542-5845561 None:intergenic 15.0%
!!! TGCATTTTTTTGTTATTATT+TGG + chr6_2:5845962-5845981 Msa0907250:intron 15.0%
!! AATGGTATATTATTTGATAT+GGG + chr6_2:5846067-5846086 Msa0907250:intron 15.0%
!! ATATTATAATATTAGATGCA+AGG + chr6_2:5846937-5846956 Msa0907250:intron 15.0%
!! TATTATAATATTAGATGCAA+GGG + chr6_2:5846938-5846957 Msa0907250:intron 15.0%
!! AAAAAAATAATTAAAGGAGA+TGG - chr6_2:5845536-5845555 None:intergenic 15.0%
!! AGAGGAAAAAAAATAATTAA+AGG - chr6_2:5845542-5845561 None:intergenic 15.0%
!!! TGCATTTTTTTGTTATTATT+TGG + chr6_2:5845962-5845981 Msa0907250:intron 15.0%
!! AATGGTATATTATTTGATAT+GGG + chr6_2:5846067-5846086 Msa0907250:intron 15.0%
!! ATATTATAATATTAGATGCA+AGG + chr6_2:5846937-5846956 Msa0907250:intron 15.0%
!! TATTATAATATTAGATGCAA+GGG + chr6_2:5846938-5846957 Msa0907250:intron 15.0%
!!! TTTTATTTTAGCATTGAAAG+TGG + chr6_2:5845805-5845824 Msa0907250:intron 20.0%
!! GAATGGTATATTATTTGATA+TGG + chr6_2:5846066-5846085 Msa0907250:intron 20.0%
!!! TGACATAAATATTTTTTACG+CGG + chr6_2:5846735-5846754 Msa0907250:intron 20.0%
!! TCTAATAAAAAAGATCAACA+AGG - chr6_2:5846805-5846824 None:intergenic 20.0%
!! TTTATTAGACACATTATTGA+AGG + chr6_2:5846816-5846835 Msa0907250:intron 20.0%
!!! AGTTCTTATTTATACACTAT+TGG + chr6_2:5846858-5846877 Msa0907250:intron 20.0%
!!! ATTTGTTTGAAGTTATGTTT+TGG + chr6_2:5847197-5847216 Msa0907250:intron 20.0%
!!! TTTTATTTTAGCATTGAAAG+TGG + chr6_2:5845805-5845824 Msa0907250:intron 20.0%
!! GAATGGTATATTATTTGATA+TGG + chr6_2:5846066-5846085 Msa0907250:intron 20.0%
!!! TGACATAAATATTTTTTACG+CGG + chr6_2:5846735-5846754 Msa0907250:intron 20.0%
!! TCTAATAAAAAAGATCAACA+AGG - chr6_2:5846805-5846824 None:intergenic 20.0%
!! TTTATTAGACACATTATTGA+AGG + chr6_2:5846816-5846835 Msa0907250:intron 20.0%
!!! AGTTCTTATTTATACACTAT+TGG + chr6_2:5846858-5846877 Msa0907250:intron 20.0%
!!! ATTTGTTTGAAGTTATGTTT+TGG + chr6_2:5847197-5847216 Msa0907250:intron 20.0%
! AATGTTTAAATGAGAAGAAG+AGG - chr6_2:5845560-5845579 None:intergenic 25.0%
! ACAACTCTCAATACAAATAA+AGG - chr6_2:5845605-5845624 None:intergenic 25.0%
!!! ATTTGAAATGATTTTGCAAG+AGG + chr6_2:5846189-5846208 Msa0907250:intron 25.0%
!! ATGAGCTTTGATAAAATGAA+TGG - chr6_2:5846440-5846459 None:intergenic 25.0%
!! TAATTTTCATTATTGGATGC+AGG + chr6_2:5846477-5846496 Msa0907250:intron 25.0%
! ATTCAATATCACTGAAATGT+TGG + chr6_2:5846617-5846636 Msa0907250:intron 25.0%
! TTCAATATCACTGAAATGTT+GGG + chr6_2:5846618-5846637 Msa0907250:intron 25.0%
! ATAATATCCTCAATAAAAGC+CGG - chr6_2:5846924-5846943 None:intergenic 25.0%
!!! TTTGATGATACCTATTTTCA+GGG + chr6_2:5847261-5847280 Msa0907250:intron 25.0%
! AATGTTTAAATGAGAAGAAG+AGG - chr6_2:5845560-5845579 None:intergenic 25.0%
! ACAACTCTCAATACAAATAA+AGG - chr6_2:5845605-5845624 None:intergenic 25.0%
!!! ATTTGAAATGATTTTGCAAG+AGG + chr6_2:5846189-5846208 Msa0907250:intron 25.0%
!! ATGAGCTTTGATAAAATGAA+TGG - chr6_2:5846440-5846459 None:intergenic 25.0%
!! TAATTTTCATTATTGGATGC+AGG + chr6_2:5846477-5846496 Msa0907250:intron 25.0%
! ATTCAATATCACTGAAATGT+TGG + chr6_2:5846617-5846636 Msa0907250:intron 25.0%
! TTCAATATCACTGAAATGTT+GGG + chr6_2:5846618-5846637 Msa0907250:intron 25.0%
! ATAATATCCTCAATAAAAGC+CGG - chr6_2:5846924-5846943 None:intergenic 25.0%
!!! TTTGATGATACCTATTTTCA+GGG + chr6_2:5847261-5847280 Msa0907250:intron 25.0%
!!! AGTTCACTACTTTTTTGTTC+AGG + chr6_2:5845630-5845649 Msa0907250:CDS 30.0%
! ATTCACACTGATTACTCATT+TGG + chr6_2:5845691-5845710 Msa0907250:CDS 30.0%
TTTCCAAATCATGATCGTAT+AGG - chr6_2:5845936-5845955 None:intergenic 30.0%
! TATACGATCATGATTTGGAA+AGG + chr6_2:5845935-5845954 Msa0907250:CDS 30.0%
! AGCTTTGATAAAATGAATGG+TGG - chr6_2:5846437-5846456 None:intergenic 30.0%
AAACTGTGTTCAAGATGTTT+GGG + chr6_2:5846657-5846676 Msa0907250:intron 30.0%
!!! CATAAATATTTTTTACGCGG+TGG + chr6_2:5846738-5846757 Msa0907250:intron 30.0%
TGAAGGACACAATTATTAAG+TGG + chr6_2:5846833-5846852 Msa0907250:intron 30.0%
! TAATGATATGCCATTTGTAC+CGG + chr6_2:5846902-5846921 Msa0907250:intron 30.0%
TGTGAGTATATGAAACCATA+CGG - chr6_2:5846991-5847010 None:intergenic 30.0%
GTAACCAGATATATAGAGAA+GGG - chr6_2:5847071-5847090 None:intergenic 30.0%
TGTAACCAGATATATAGAGA+AGG - chr6_2:5847072-5847091 None:intergenic 30.0%
!! CTTTGATGATACCTATTTTC+AGG + chr6_2:5847260-5847279 Msa0907250:intron 30.0%
AAAGATAGTAGGGGATATAA+TGG + chr6_2:5847288-5847307 Msa0907250:CDS 30.0%
!!! AGTTCACTACTTTTTTGTTC+AGG + chr6_2:5845630-5845649 Msa0907250:CDS 30.0%
! ATTCACACTGATTACTCATT+TGG + chr6_2:5845691-5845710 Msa0907250:CDS 30.0%
TTTCCAAATCATGATCGTAT+AGG - chr6_2:5845936-5845955 None:intergenic 30.0%
! TATACGATCATGATTTGGAA+AGG + chr6_2:5845935-5845954 Msa0907250:CDS 30.0%
! AGCTTTGATAAAATGAATGG+TGG - chr6_2:5846437-5846456 None:intergenic 30.0%
AAACTGTGTTCAAGATGTTT+GGG + chr6_2:5846657-5846676 Msa0907250:intron 30.0%
!!! CATAAATATTTTTTACGCGG+TGG + chr6_2:5846738-5846757 Msa0907250:intron 30.0%
TGAAGGACACAATTATTAAG+TGG + chr6_2:5846833-5846852 Msa0907250:intron 30.0%
! TAATGATATGCCATTTGTAC+CGG + chr6_2:5846902-5846921 Msa0907250:intron 30.0%
TGTGAGTATATGAAACCATA+CGG - chr6_2:5846991-5847010 None:intergenic 30.0%
GTAACCAGATATATAGAGAA+GGG - chr6_2:5847071-5847090 None:intergenic 30.0%
TGTAACCAGATATATAGAGA+AGG - chr6_2:5847072-5847091 None:intergenic 30.0%
!! CTTTGATGATACCTATTTTC+AGG + chr6_2:5847260-5847279 Msa0907250:intron 30.0%
AAAGATAGTAGGGGATATAA+TGG + chr6_2:5847288-5847307 Msa0907250:CDS 30.0%
GAGCTGATAGATACAAAAGT+AGG - chr6_2:5845583-5845602 None:intergenic 35.0%
!!! AGGTCATTCTTTTAGAATCC+CGG + chr6_2:5845650-5845669 Msa0907250:CDS 35.0%
AAAGTGGCTGATTATGATTC+AGG + chr6_2:5845821-5845840 Msa0907250:intron 35.0%
!! TGATTATGATTCAGGTTGCA+TGG + chr6_2:5845829-5845848 Msa0907250:intron 35.0%
TGTCCTATACGATCATGATT+TGG + chr6_2:5845930-5845949 Msa0907250:CDS 35.0%
! TATGTGCTTTTCGATATGGA+GGG + chr6_2:5846124-5846143 Msa0907250:CDS 35.0%
ACTTATGTAACCAACTCTTG+TGG - chr6_2:5846160-5846179 None:intergenic 35.0%
! CAAGAGTTGGTTACATAAGT+TGG + chr6_2:5846160-5846179 Msa0907250:intron 35.0%
! AATTGAAAGTGCACGAAGAA+TGG - chr6_2:5846356-5846375 None:intergenic 35.0%
TTTCATTATTGGATGCAGGT+TGG + chr6_2:5846481-5846500 Msa0907250:intron 35.0%
TCAGTGGTATTTATGCAGAA+TGG + chr6_2:5846526-5846545 Msa0907250:CDS 35.0%
TGGTATTTATGCAGAATGGA+GGG + chr6_2:5846530-5846549 Msa0907250:CDS 35.0%
TCAGTGGTATTTATGCAGAA+TGG + chr6_2:5846526-5846545 Msa0907250:CDS 35.0%
TGGTATTTATGCAGAATGGA+GGG + chr6_2:5846530-5846549 Msa0907250:CDS 35.0%
GAAACTGTGTTCAAGATGTT+TGG + chr6_2:5846656-5846675 Msa0907250:intron 35.0%
AACTGTGTTCAAGATGTTTG+GGG + chr6_2:5846658-5846677 Msa0907250:intron 35.0%
ACAAGGACAAAGAACTGAAA+TGG - chr6_2:5846788-5846807 None:intergenic 35.0%
! ACACTATTGGTGTGAGTTTT+AGG + chr6_2:5846871-5846890 Msa0907250:intron 35.0%
TCAATAAAAGCCGGTACAAA+TGG - chr6_2:5846915-5846934 None:intergenic 35.0%
!!! ATTTGTACCGGCTTTTATTG+AGG + chr6_2:5846914-5846933 Msa0907250:intron 35.0%
GATTAATAAGTGACTCCGTA+TGG + chr6_2:5846973-5846992 Msa0907250:intron 35.0%
TATACTCACATTATGTTGCG+AGG + chr6_2:5847001-5847020 Msa0907250:intron 35.0%
! AAGTCTTTGTCCTGTTTTGT+TGG + chr6_2:5847220-5847239 Msa0907250:intron 35.0%
GTTTGGTAAACCAACAAAAC+AGG - chr6_2:5847233-5847252 None:intergenic 35.0%
!! TGTTGGTTTACCAAACTAAC+TGG + chr6_2:5847237-5847256 Msa0907250:intron 35.0%
ATCATCAAAGCCAGTTAGTT+TGG - chr6_2:5847250-5847269 None:intergenic 35.0%
GAGCTGATAGATACAAAAGT+AGG - chr6_2:5845583-5845602 None:intergenic 35.0%
!!! AGGTCATTCTTTTAGAATCC+CGG + chr6_2:5845650-5845669 Msa0907250:CDS 35.0%
AAAGTGGCTGATTATGATTC+AGG + chr6_2:5845821-5845840 Msa0907250:intron 35.0%
!! TGATTATGATTCAGGTTGCA+TGG + chr6_2:5845829-5845848 Msa0907250:intron 35.0%
TGTCCTATACGATCATGATT+TGG + chr6_2:5845930-5845949 Msa0907250:CDS 35.0%
! TATGTGCTTTTCGATATGGA+GGG + chr6_2:5846124-5846143 Msa0907250:CDS 35.0%
ACTTATGTAACCAACTCTTG+TGG - chr6_2:5846160-5846179 None:intergenic 35.0%
! CAAGAGTTGGTTACATAAGT+TGG + chr6_2:5846160-5846179 Msa0907250:intron 35.0%
! AATTGAAAGTGCACGAAGAA+TGG - chr6_2:5846356-5846375 None:intergenic 35.0%
TTTCATTATTGGATGCAGGT+TGG + chr6_2:5846481-5846500 Msa0907250:intron 35.0%
TCAGTGGTATTTATGCAGAA+TGG + chr6_2:5846526-5846545 Msa0907250:CDS 35.0%
TGGTATTTATGCAGAATGGA+GGG + chr6_2:5846530-5846549 Msa0907250:CDS 35.0%
TCAGTGGTATTTATGCAGAA+TGG + chr6_2:5846526-5846545 Msa0907250:CDS 35.0%
TGGTATTTATGCAGAATGGA+GGG + chr6_2:5846530-5846549 Msa0907250:CDS 35.0%
GAAACTGTGTTCAAGATGTT+TGG + chr6_2:5846656-5846675 Msa0907250:intron 35.0%
AACTGTGTTCAAGATGTTTG+GGG + chr6_2:5846658-5846677 Msa0907250:intron 35.0%
ACAAGGACAAAGAACTGAAA+TGG - chr6_2:5846788-5846807 None:intergenic 35.0%
! ACACTATTGGTGTGAGTTTT+AGG + chr6_2:5846871-5846890 Msa0907250:intron 35.0%
TCAATAAAAGCCGGTACAAA+TGG - chr6_2:5846915-5846934 None:intergenic 35.0%
!!! ATTTGTACCGGCTTTTATTG+AGG + chr6_2:5846914-5846933 Msa0907250:intron 35.0%
GATTAATAAGTGACTCCGTA+TGG + chr6_2:5846973-5846992 Msa0907250:intron 35.0%
TATACTCACATTATGTTGCG+AGG + chr6_2:5847001-5847020 Msa0907250:intron 35.0%
! AAGTCTTTGTCCTGTTTTGT+TGG + chr6_2:5847220-5847239 Msa0907250:intron 35.0%
GTTTGGTAAACCAACAAAAC+AGG - chr6_2:5847233-5847252 None:intergenic 35.0%
!! TGTTGGTTTACCAAACTAAC+TGG + chr6_2:5847237-5847256 Msa0907250:intron 35.0%
ATCATCAAAGCCAGTTAGTT+TGG - chr6_2:5847250-5847269 None:intergenic 35.0%
!!! GGTCATTCTTTTAGAATCCC+GGG + chr6_2:5845651-5845670 Msa0907250:CDS 40.0%
!!! TTTGGTTTTCCTGTTGACCT+AGG + chr6_2:5845709-5845728 Msa0907250:CDS 40.0%
ATCTTTACCATGATGCACCT+AGG - chr6_2:5845729-5845748 None:intergenic 40.0%
AGTTTGCAATGAGAATCCTC+TGG + chr6_2:5845852-5845871 Msa0907250:CDS 40.0%
CAGAGTTATCCTCACAAGTA+CGG - chr6_2:5845912-5845931 None:intergenic 40.0%
GAATGCTTCAATCTTTCCTC+TGG + chr6_2:5846036-5846055 Msa0907250:intron 40.0%
TTTCCTCTGGTCATCTTGAA+TGG + chr6_2:5846049-5846068 Msa0907250:intron 40.0%
ATACCATTCAAGATGACCAG+AGG - chr6_2:5846055-5846074 None:intergenic 40.0%
! CAGCTATGTGCTTTTCGATA+TGG + chr6_2:5846120-5846139 Msa0907250:intron 40.0%
! CTATGTGCTTTTCGATATGG+AGG + chr6_2:5846123-5846142 Msa0907250:CDS 40.0%
! ATGTGCTTTTCGATATGGAG+GGG + chr6_2:5846125-5846144 Msa0907250:CDS 40.0%
GAATCAAGTTCCACAAGAGT+TGG + chr6_2:5846147-5846166 Msa0907250:CDS 40.0%
TTGAAAGAAAGCCAGAACTG+AGG + chr6_2:5846380-5846399 Msa0907250:CDS 40.0%
GCTAATAATGACCTCAGTTC+TGG - chr6_2:5846394-5846413 None:intergenic 40.0%
! ATTATTGGATGCAGGTTGGA+GGG + chr6_2:5846485-5846504 Msa0907250:intron 40.0%
! TTTCACATAAGGTGCTTCAG+TGG + chr6_2:5846510-5846529 Msa0907250:CDS 40.0%
GTGGTATTTATGCAGAATGG+AGG + chr6_2:5846529-5846548 Msa0907250:CDS 40.0%
! TTTCACATAAGGTGCTTCAG+TGG + chr6_2:5846510-5846529 Msa0907250:CDS 40.0%
GTGGTATTTATGCAGAATGG+AGG + chr6_2:5846529-5846548 Msa0907250:CDS 40.0%
AAATGTTGGGACCAGGTAAT+TGG + chr6_2:5846631-5846650 Msa0907250:intron 40.0%
CACAGTTTCTTCCAATTACC+TGG - chr6_2:5846645-5846664 None:intergenic 40.0%
CTCACCCTTCTCTATATATC+TGG + chr6_2:5847064-5847083 Msa0907250:intron 40.0%
TTACATGAAGAATTGCTCCC+TGG + chr6_2:5847087-5847106 Msa0907250:intron 40.0%
TTGGCTAGGGTATGTATAAC+AGG - chr6_2:5847144-5847163 None:intergenic 40.0%
TGTTATACATACCCTAGCCA+AGG + chr6_2:5847143-5847162 Msa0907250:CDS 40.0%
GTTATACATACCCTAGCCAA+GGG + chr6_2:5847144-5847163 Msa0907250:CDS 40.0%
ATCTTTGTCGCCCTGAAAAT+AGG - chr6_2:5847274-5847293 None:intergenic 40.0%
!!! GGTCATTCTTTTAGAATCCC+GGG + chr6_2:5845651-5845670 Msa0907250:CDS 40.0%
!!! TTTGGTTTTCCTGTTGACCT+AGG + chr6_2:5845709-5845728 Msa0907250:CDS 40.0%
ATCTTTACCATGATGCACCT+AGG - chr6_2:5845729-5845748 None:intergenic 40.0%
AGTTTGCAATGAGAATCCTC+TGG + chr6_2:5845852-5845871 Msa0907250:CDS 40.0%
CAGAGTTATCCTCACAAGTA+CGG - chr6_2:5845912-5845931 None:intergenic 40.0%
GAATGCTTCAATCTTTCCTC+TGG + chr6_2:5846036-5846055 Msa0907250:intron 40.0%
TTTCCTCTGGTCATCTTGAA+TGG + chr6_2:5846049-5846068 Msa0907250:intron 40.0%
ATACCATTCAAGATGACCAG+AGG - chr6_2:5846055-5846074 None:intergenic 40.0%
! CAGCTATGTGCTTTTCGATA+TGG + chr6_2:5846120-5846139 Msa0907250:intron 40.0%
! CTATGTGCTTTTCGATATGG+AGG + chr6_2:5846123-5846142 Msa0907250:CDS 40.0%
! ATGTGCTTTTCGATATGGAG+GGG + chr6_2:5846125-5846144 Msa0907250:CDS 40.0%
GAATCAAGTTCCACAAGAGT+TGG + chr6_2:5846147-5846166 Msa0907250:CDS 40.0%
TTGAAAGAAAGCCAGAACTG+AGG + chr6_2:5846380-5846399 Msa0907250:CDS 40.0%
GCTAATAATGACCTCAGTTC+TGG - chr6_2:5846394-5846413 None:intergenic 40.0%
! ATTATTGGATGCAGGTTGGA+GGG + chr6_2:5846485-5846504 Msa0907250:intron 40.0%
! TTTCACATAAGGTGCTTCAG+TGG + chr6_2:5846510-5846529 Msa0907250:CDS 40.0%
GTGGTATTTATGCAGAATGG+AGG + chr6_2:5846529-5846548 Msa0907250:CDS 40.0%
! TTTCACATAAGGTGCTTCAG+TGG + chr6_2:5846510-5846529 Msa0907250:CDS 40.0%
GTGGTATTTATGCAGAATGG+AGG + chr6_2:5846529-5846548 Msa0907250:CDS 40.0%
AAATGTTGGGACCAGGTAAT+TGG + chr6_2:5846631-5846650 Msa0907250:intron 40.0%
CACAGTTTCTTCCAATTACC+TGG - chr6_2:5846645-5846664 None:intergenic 40.0%
CTCACCCTTCTCTATATATC+TGG + chr6_2:5847064-5847083 Msa0907250:intron 40.0%
TTACATGAAGAATTGCTCCC+TGG + chr6_2:5847087-5847106 Msa0907250:intron 40.0%
TTGGCTAGGGTATGTATAAC+AGG - chr6_2:5847144-5847163 None:intergenic 40.0%
TGTTATACATACCCTAGCCA+AGG + chr6_2:5847143-5847162 Msa0907250:CDS 40.0%
GTTATACATACCCTAGCCAA+GGG + chr6_2:5847144-5847163 Msa0907250:CDS 40.0%
ATCTTTGTCGCCCTGAAAAT+AGG - chr6_2:5847274-5847293 None:intergenic 40.0%
TTAGAATCCCGGGATAGACT+TGG + chr6_2:5845661-5845680 Msa0907250:CDS 45.0%
! AATCCTCTGGCTCCATTGAT+TGG + chr6_2:5845865-5845884 Msa0907250:CDS 45.0%
! ATCCTCTGGCTCCATTGATT+GGG + chr6_2:5845866-5845885 Msa0907250:CDS 45.0%
ACCTCTTTACCGTACTTGTG+AGG + chr6_2:5845900-5845919 Msa0907250:CDS 45.0%
TCCTCACAAGTACGGTAAAG+AGG - chr6_2:5845904-5845923 None:intergenic 45.0%
GCAGACAGATAATGTACGAC+AGG + chr6_2:5846312-5846331 Msa0907250:intron 45.0%
! CATTATTGGATGCAGGTTGG+AGG + chr6_2:5846484-5846503 Msa0907250:intron 45.0%
! TTATTGGATGCAGGTTGGAG+GGG + chr6_2:5846486-5846505 Msa0907250:intron 45.0%
GAATGGAGGGCTTTCACATA+AGG + chr6_2:5846543-5846562 Msa0907250:CDS 45.0%
ATTTATGCAGAATGGAGGGC+TGG + chr6_2:5846534-5846553 Msa0907250:CDS 45.0%
ATCACTGAAATGTTGGGACC+AGG + chr6_2:5846624-5846643 Msa0907250:intron 45.0%
!!! ATTTTTTACGCGGTGGACTG+AGG + chr6_2:5846745-5846764 Msa0907250:intron 45.0%
! GTGGACTGAGGATTCATGTA+TGG + chr6_2:5846757-5846776 Msa0907250:intron 45.0%
!! TGGTCATGGTCTTATGGTCA+GGG + chr6_2:5847110-5847129 Msa0907250:intron 45.0%
CTAGGGTATGTATAACAGGC+AGG - chr6_2:5847140-5847159 None:intergenic 45.0%
AATGTCAAGACCCTTGGCTA+GGG - chr6_2:5847157-5847176 None:intergenic 45.0%
TAGCCAAGGGTCTTGACATT+CGG + chr6_2:5847157-5847176 Msa0907250:CDS 45.0%
TTCAGGGCGACAAAGATAGT+AGG + chr6_2:5847277-5847296 Msa0907250:intron 45.0%
TCAGGGCGACAAAGATAGTA+GGG + chr6_2:5847278-5847297 Msa0907250:intron 45.0%
TTAGAATCCCGGGATAGACT+TGG + chr6_2:5845661-5845680 Msa0907250:CDS 45.0%
! AATCCTCTGGCTCCATTGAT+TGG + chr6_2:5845865-5845884 Msa0907250:CDS 45.0%
! ATCCTCTGGCTCCATTGATT+GGG + chr6_2:5845866-5845885 Msa0907250:CDS 45.0%
ACCTCTTTACCGTACTTGTG+AGG + chr6_2:5845900-5845919 Msa0907250:CDS 45.0%
TCCTCACAAGTACGGTAAAG+AGG - chr6_2:5845904-5845923 None:intergenic 45.0%
GCAGACAGATAATGTACGAC+AGG + chr6_2:5846312-5846331 Msa0907250:intron 45.0%
! CATTATTGGATGCAGGTTGG+AGG + chr6_2:5846484-5846503 Msa0907250:intron 45.0%
! TTATTGGATGCAGGTTGGAG+GGG + chr6_2:5846486-5846505 Msa0907250:intron 45.0%
GAATGGAGGGCTTTCACATA+AGG + chr6_2:5846543-5846562 Msa0907250:CDS 45.0%
ATTTATGCAGAATGGAGGGC+TGG + chr6_2:5846534-5846553 Msa0907250:CDS 45.0%
ATCACTGAAATGTTGGGACC+AGG + chr6_2:5846624-5846643 Msa0907250:intron 45.0%
!!! ATTTTTTACGCGGTGGACTG+AGG + chr6_2:5846745-5846764 Msa0907250:intron 45.0%
! GTGGACTGAGGATTCATGTA+TGG + chr6_2:5846757-5846776 Msa0907250:intron 45.0%
!! TGGTCATGGTCTTATGGTCA+GGG + chr6_2:5847110-5847129 Msa0907250:intron 45.0%
CTAGGGTATGTATAACAGGC+AGG - chr6_2:5847140-5847159 None:intergenic 45.0%
AATGTCAAGACCCTTGGCTA+GGG - chr6_2:5847157-5847176 None:intergenic 45.0%
TAGCCAAGGGTCTTGACATT+CGG + chr6_2:5847157-5847176 Msa0907250:CDS 45.0%
TTCAGGGCGACAAAGATAGT+AGG + chr6_2:5847277-5847296 Msa0907250:intron 45.0%
TCAGGGCGACAAAGATAGTA+GGG + chr6_2:5847278-5847297 Msa0907250:intron 45.0%
!!! TATAATTTAATTTTCATTAT+TGG + chr6_2:5846470-5846489 Msa0907250:intron 5.0%
!!! TATAATTTAATTTTCATTAT+TGG + chr6_2:5846470-5846489 Msa0907250:intron 5.0%
TTCTGCCACCAAGTCTATCC+CGG - chr6_2:5845672-5845691 None:intergenic 50.0%
CATGATGCACCTAGGTCAAC+AGG - chr6_2:5845721-5845740 None:intergenic 50.0%
CTGTTGACCTAGGTGCATCA+TGG + chr6_2:5845719-5845738 Msa0907250:CDS 50.0%
GTTGGAGGGGCTTTCACATA+AGG + chr6_2:5846499-5846518 Msa0907250:CDS 50.0%
CATGAAGAATTGCTCCCTGG+TGG + chr6_2:5847090-5847109 Msa0907250:intron 50.0%
CCATAAGACCATGACCACCA+GGG - chr6_2:5847107-5847126 None:intergenic 50.0%
ACCATAAGACCATGACCACC+AGG - chr6_2:5847108-5847127 None:intergenic 50.0%
!! GTGGTCATGGTCTTATGGTC+AGG + chr6_2:5847109-5847128 Msa0907250:intron 50.0%
!! GGTCATGGTCTTATGGTCAG+GGG + chr6_2:5847111-5847130 Msa0907250:intron 50.0%
GAATGTCAAGACCCTTGGCT+AGG - chr6_2:5847158-5847177 None:intergenic 50.0%
AAGGGTCTTGACATTCGGCT+GGG + chr6_2:5847162-5847181 Msa0907250:CDS 50.0%
CAGGGCGACAAAGATAGTAG+GGG + chr6_2:5847279-5847298 Msa0907250:intron 50.0%
TTCTGCCACCAAGTCTATCC+CGG - chr6_2:5845672-5845691 None:intergenic 50.0%
CATGATGCACCTAGGTCAAC+AGG - chr6_2:5845721-5845740 None:intergenic 50.0%
CTGTTGACCTAGGTGCATCA+TGG + chr6_2:5845719-5845738 Msa0907250:CDS 50.0%
GTTGGAGGGGCTTTCACATA+AGG + chr6_2:5846499-5846518 Msa0907250:CDS 50.0%
CATGAAGAATTGCTCCCTGG+TGG + chr6_2:5847090-5847109 Msa0907250:intron 50.0%
CCATAAGACCATGACCACCA+GGG - chr6_2:5847107-5847126 None:intergenic 50.0%
ACCATAAGACCATGACCACC+AGG - chr6_2:5847108-5847127 None:intergenic 50.0%
!! GTGGTCATGGTCTTATGGTC+AGG + chr6_2:5847109-5847128 Msa0907250:intron 50.0%
!! GGTCATGGTCTTATGGTCAG+GGG + chr6_2:5847111-5847130 Msa0907250:intron 50.0%
GAATGTCAAGACCCTTGGCT+AGG - chr6_2:5847158-5847177 None:intergenic 50.0%
AAGGGTCTTGACATTCGGCT+GGG + chr6_2:5847162-5847181 Msa0907250:CDS 50.0%
CAGGGCGACAAAGATAGTAG+GGG + chr6_2:5847279-5847298 Msa0907250:intron 50.0%
GAATCCCGGGATAGACTTGG+TGG + chr6_2:5845664-5845683 Msa0907250:CDS 55.0%
TCTGCCACCAAGTCTATCCC+GGG - chr6_2:5845671-5845690 None:intergenic 55.0%
CTCCCAATCAATGGAGCCAG+AGG - chr6_2:5845871-5845890 None:intergenic 55.0%
! CTCTGGCTCCATTGATTGGG+AGG + chr6_2:5845869-5845888 Msa0907250:CDS 55.0%
! GCTCCATTGATTGGGAGGCT+GGG + chr6_2:5845874-5845893 Msa0907250:CDS 55.0%
AGTCCCAGCCTCCCAATCAA+TGG - chr6_2:5845880-5845899 None:intergenic 55.0%
GAATTGCTCCCTGGTGGTCA+TGG + chr6_2:5847096-5847115 Msa0907250:intron 55.0%
! CCCTGGTGGTCATGGTCTTA+TGG + chr6_2:5847104-5847123 Msa0907250:intron 55.0%
CAGCCGAATGTCAAGACCCT+TGG - chr6_2:5847163-5847182 None:intergenic 55.0%
CAAGGGTCTTGACATTCGGC+TGG + chr6_2:5847161-5847180 Msa0907250:CDS 55.0%
AGGGTCTTGACATTCGGCTG+GGG + chr6_2:5847163-5847182 Msa0907250:CDS 55.0%
GAATCCCGGGATAGACTTGG+TGG + chr6_2:5845664-5845683 Msa0907250:CDS 55.0%
TCTGCCACCAAGTCTATCCC+GGG - chr6_2:5845671-5845690 None:intergenic 55.0%
CTCCCAATCAATGGAGCCAG+AGG - chr6_2:5845871-5845890 None:intergenic 55.0%
! CTCTGGCTCCATTGATTGGG+AGG + chr6_2:5845869-5845888 Msa0907250:CDS 55.0%
! GCTCCATTGATTGGGAGGCT+GGG + chr6_2:5845874-5845893 Msa0907250:CDS 55.0%
AGTCCCAGCCTCCCAATCAA+TGG - chr6_2:5845880-5845899 None:intergenic 55.0%
GAATTGCTCCCTGGTGGTCA+TGG + chr6_2:5847096-5847115 Msa0907250:intron 55.0%
! CCCTGGTGGTCATGGTCTTA+TGG + chr6_2:5847104-5847123 Msa0907250:intron 55.0%
CAGCCGAATGTCAAGACCCT+TGG - chr6_2:5847163-5847182 None:intergenic 55.0%
CAAGGGTCTTGACATTCGGC+TGG + chr6_2:5847161-5847180 Msa0907250:CDS 55.0%
AGGGTCTTGACATTCGGCTG+GGG + chr6_2:5847163-5847182 Msa0907250:CDS 55.0%
! GGCTCCATTGATTGGGAGGC+TGG + chr6_2:5845873-5845892 Msa0907250:CDS 60.0%
TTGACATTCGGCTGGGGCAC+AGG + chr6_2:5847169-5847188 Msa0907250:CDS 60.0%
! GGCTCCATTGATTGGGAGGC+TGG + chr6_2:5845873-5845892 Msa0907250:CDS 60.0%
TTGACATTCGGCTGGGGCAC+AGG + chr6_2:5847169-5847188 Msa0907250:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 5845520 5847315 5845520 ID=Msa0907250;Name=Msa0907250
chr6_2 mRNA 5845520 5847315 5845520 ID=Msa0907250-mRNA-1;Parent=Msa0907250;Name=Msa0907250-mRNA-1;_AED=0.32;_eAED=0.42;_QI=0|0|0|1|0.5|0.57|7|0|208
chr6_2 exon 5845520 5845740 5845520 ID=Msa0907250-mRNA-1:exon:1795;Parent=Msa0907250-mRNA-1
chr6_2 exon 5845843 5845956 5845843 ID=Msa0907250-mRNA-1:exon:1796;Parent=Msa0907250-mRNA-1
chr6_2 exon 5846123 5846168 5846123 ID=Msa0907250-mRNA-1:exon:1797;Parent=Msa0907250-mRNA-1
chr6_2 exon 5846316 5846401 5846316 ID=Msa0907250-mRNA-1:exon:1798;Parent=Msa0907250-mRNA-1
chr6_2 exon 5846499 5846564 5846499 ID=Msa0907250-mRNA-1:exon:1799;Parent=Msa0907250-mRNA-1
chr6_2 exon 5847131 5847190 5847131 ID=Msa0907250-mRNA-1:exon:1800;Parent=Msa0907250-mRNA-1
chr6_2 exon 5847282 5847315 5847282 ID=Msa0907250-mRNA-1:exon:1801;Parent=Msa0907250-mRNA-1
chr6_2 CDS 5845520 5845740 5845520 ID=Msa0907250-mRNA-1:cds;Parent=Msa0907250-mRNA-1
chr6_2 CDS 5845843 5845956 5845843 ID=Msa0907250-mRNA-1:cds;Parent=Msa0907250-mRNA-1
chr6_2 CDS 5846123 5846168 5846123 ID=Msa0907250-mRNA-1:cds;Parent=Msa0907250-mRNA-1
chr6_2 CDS 5846316 5846401 5846316 ID=Msa0907250-mRNA-1:cds;Parent=Msa0907250-mRNA-1
chr6_2 CDS 5846499 5846564 5846499 ID=Msa0907250-mRNA-1:cds;Parent=Msa0907250-mRNA-1
chr6_2 CDS 5847131 5847190 5847131 ID=Msa0907250-mRNA-1:cds;Parent=Msa0907250-mRNA-1
chr6_2 CDS 5847282 5847315 5847282 ID=Msa0907250-mRNA-1:cds;Parent=Msa0907250-mRNA-1
Gene Sequence

>Msa0907250

ATGAAGAGAGACACCATCTCCTTTAATTATTTTTTTTCCTCTTCTTCTCATTTAAACATTCCTACTTTTGTATCTATCAGCTCCTTTATTTGTATTGAGAGTTGTACTGAAGTTCACTACTTTTTTGTTCAGGTCATTCTTTTAGAATCCCGGGATAGACTTGGTGGCAGAATTCACACTGATTACTCATTTGGTTTTCCTGTTGACCTAGGTGCATCATGGTTGCATGGAGTTTGCAATGAGAATCCTCTGGCTCCATTGATTGGGAGGCTGGGACTACCTCTTTACCGTACTTGTGAGGATAACTCTGTCCTATACGATCATGATTTGGAAAGCTATGTGCTTTTCGATATGGAGGGGAATCAAGTTCCACAAGAGTTGACAGATAATGTACGACAGGAATTCAGCGAAGACATGTCCATTCTTCGTGCACTTTCAATTGTTTTTGAAAGAAAGCCAGAACTGAGGTTGGAGGGGCTTTCACATAAGGTGCTTCAGTGGTATTTATGCAGAATGGAGGGCTTTCACATAAGGGGATACCTGCCTGTTATACATACCCTAGCCAAGGGTCTTGACATTCGGCTGGGGCACAGGGCGACAAAGATAGTAGGGGATATAATGGAGTGA

Protein sequence

>Msa0907250

MKRDTISFNYFFSSSSHLNIPTFVSISSFICIESCTEVHYFFVQVILLESRDRLGGRIHTDYSFGFPVDLGASWLHGVCNENPLAPLIGRLGLPLYRTCEDNSVLYDHDLESYVLFDMEGNQVPQELTDNVRQEFSEDMSILRALSIVFERKPELRLEGLSHKVLQWYLCRMEGFHIRGYLPVIHTLAKGLDIRLGHRATKIVGDIME*