AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907570 MtrunA17_Chr6g0456201 96.176 1020 38 1 1 1019 1 1020 0.0 2013
Msa0907570 MtrunA17_Chr7g0260401 64.902 1020 318 9 28 1013 34 1047 0.0 1250
Msa0907570 MtrunA17_Chr8g0340261 89.492 571 43 1 448 1018 1 554 0.0 1043
Msa0907570 MtrunA17_Chr2g0298871 56.256 967 399 9 53 1010 123 1074 0.0 1030
Msa0907570 MtrunA17_Chr4g0002331 53.468 1038 419 13 20 1010 66 1086 0.0 1020
Msa0907570 MtrunA17_Chr1g0173111 45.858 1014 496 17 6 1005 37 1011 0.0 854
Msa0907570 MtrunA17_Chr8g0382071 47.744 953 455 17 70 1008 94 1017 0.0 841
Msa0907570 MtrunA17_Chr8g0340271 90.393 458 37 2 1 458 1 451 0.0 821
Msa0907570 MtrunA17_Chr4g0054021 47.808 958 465 13 57 1005 6 937 0.0 807
Msa0907570 MtrunA17_Chr5g0401211 47.704 958 460 15 63 1005 83 1014 0.0 800
Msa0907570 MtrunA17_Chr3g0134771 47.441 938 454 12 80 1005 106 1016 0.0 799
Msa0907570 MtrunA17_Chr4g0020551 46.629 875 424 14 70 929 27 873 0.0 756
Msa0907570 MtrunA17_Chr8g0355421 41.158 950 514 16 70 1005 87 1005 0.0 684
Msa0907570 MtrunA17_Chr5g0447521 33.600 875 523 15 152 1003 165 1004 1.91e-141 450
Msa0907570 MtrunA17_Chr4g0005551 30.676 991 614 19 39 1005 26 967 1.36e-136 436
Msa0907570 MtrunA17_Chr2g0334231 52.618 382 169 3 70 451 135 504 5.03e-122 383
Msa0907570 MtrunA17_Chr7g0263361 32.905 857 457 24 115 885 48 872 3.55e-108 361
Msa0907570 MtrunA17_Chr8g0346461 30.920 870 483 22 107 885 25 867 4.71e-95 325
Msa0907570 MtrunA17_Chr3g0134951 30.247 810 478 19 120 869 29 811 1.04e-85 298
Msa0907570 MtrunA17_Chr2g0334221 51.839 299 137 6 469 765 43 336 1.91e-84 276
Msa0907570 MtrunA17_Chr2g0334201 55.952 168 69 1 847 1009 1 168 1.67e-61 207
Msa0907570 MtrunA17_Chr4g0072131 24.209 727 456 21 95 817 24 659 9.34e-47 181
Msa0907570 MtrunA17_Chr8g0381711 25.258 776 477 21 154 901 69 769 1.60e-46 180
Msa0907570 MtrunA17_Chr4g0065481 23.537 752 474 23 72 817 1 657 8.34e-46 179
Msa0907570 MtrunA17_Chr2g0298031 24.585 602 371 13 219 817 141 662 4.25e-44 173
Msa0907570 MtrunA17_Chr3g0138931 22.942 741 474 18 81 817 9 656 2.67e-43 171
Msa0907570 MtrunA17_Chr1g0148031 23.549 586 368 12 233 817 150 656 6.58e-43 169
Msa0907570 MtrunA17_Chr2g0304941 22.503 751 480 22 81 825 10 664 7.09e-43 169
Msa0907570 MtrunA17_Chr2g0333721 23.654 613 377 16 219 825 134 661 2.19e-42 168
Msa0907570 MtrunA17_Chr6g0452721 24.110 618 368 19 219 825 138 665 2.62e-42 167
Msa0907570 MtrunA17_Chr4g0059961 24.188 616 370 19 219 825 140 667 2.84e-41 164
Msa0907570 MtrunA17_Chr8g0365021 23.432 606 372 14 219 817 206 726 8.77e-41 163
Msa0907570 MtrunA17_Chr1g0147981 22.378 715 438 20 121 817 58 673 2.18e-40 161
Msa0907570 MtrunA17_Chr8g0335291 23.645 609 381 16 219 825 144 670 2.34e-37 152
Msa0907570 MtrunA17_Chr7g0276551 25.536 466 288 12 386 848 42 451 3.49e-33 137
Msa0907570 MtrunA17_Chr5g0421231 81.250 80 15 0 521 600 279 358 1.01e-32 137
Msa0907570 MtrunA17_Chr3g0131151 23.077 689 389 22 173 780 215 843 7.33e-22 102
Msa0907570 MtrunA17_Chr2g0324791 21.706 797 452 23 212 863 98 867 6.71e-21 99.4
Msa0907570 MtrunA17_Chr2g0297051 30.151 199 106 4 624 822 806 971 2.05e-19 94.4
Msa0907570 MtrunA17_Chr8g0374391 29.032 186 100 3 637 822 32 185 1.10e-18 86.7
Msa0907570 MtrunA17_Chr8g0374331 29.032 186 100 3 637 822 39 192 1.20e-18 86.7
Msa0907570 MtrunA17_Chr4g0052521 29.146 199 108 4 624 822 774 939 5.61e-18 89.7
Msa0907570 MtrunA17_Chr5g0397621 31.148 183 90 5 620 799 671 820 2.83e-16 84.0
Msa0907570 MtrunA17_Chr8g0339181 29.208 202 104 4 640 840 759 922 9.56e-16 82.4
Msa0907570 MtrunA17_Chr4g0062251 23.041 434 242 15 501 856 555 974 5.10e-15 80.1
Msa0907570 MtrunA17_Chr5g0415271 20.804 846 452 32 185 831 92 918 3.03e-14 77.8
Msa0907570 MtrunA17_Chr8g0363911 28.856 201 114 6 534 718 578 765 1.14e-11 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907570 AT3G22910.1 66.896 1018 307 12 12 1018 17 1015 0.0 1298
Msa0907570 AT3G63380.1 65.343 1007 314 10 27 1014 25 1015 0.0 1268
Msa0907570 AT4G29900.1 53.721 1048 442 10 6 1018 23 1062 0.0 1068
Msa0907570 AT4G29900.2 53.721 1048 442 10 6 1018 23 1062 0.0 1068
Msa0907570 AT5G57110.1 56.113 957 402 7 70 1018 114 1060 0.0 1046
Msa0907570 AT5G57110.3 56.113 957 402 7 70 1018 114 1060 0.0 1046
Msa0907570 AT5G57110.2 56.113 957 402 7 70 1018 114 1060 0.0 1046
Msa0907570 AT3G21180.1 55.812 955 403 10 66 1010 124 1069 0.0 1012
Msa0907570 AT3G57330.1 46.937 963 474 12 57 1012 80 1012 0.0 860
Msa0907570 AT3G57330.2 47.176 956 468 12 57 1005 25 950 0.0 860
Msa0907570 AT2G41560.1 44.444 1017 517 15 6 1012 37 1015 0.0 843
Msa0907570 AT2G41560.2 46.341 943 466 12 80 1012 1 913 0.0 830
Msa0907570 AT2G41560.3 46.341 943 466 12 80 1012 1 913 0.0 830
Msa0907570 AT2G41560.4 46.341 943 466 12 80 1012 1 913 0.0 830
Msa0907570 AT1G27770.4 46.941 948 465 14 70 1005 96 1017 0.0 802
Msa0907570 AT1G27770.1 46.941 948 465 14 70 1005 96 1017 0.0 802
Msa0907570 AT1G27770.3 46.835 948 466 13 70 1005 33 954 0.0 802
Msa0907570 AT4G37640.1 47.188 960 471 15 57 1005 80 1014 0.0 786
Msa0907570 AT2G22950.1 45.563 1003 490 14 27 1005 45 1015 0.0 783
Msa0907570 AT5G53010.1 36.450 952 519 20 70 993 140 1033 1.58e-173 535
Msa0907570 AT5G53010.2 36.631 647 387 11 70 713 140 766 4.09e-121 389
Msa0907570 AT1G27770.2 41.770 565 304 11 70 625 96 644 1.74e-117 384
Msa0907570 AT1G27770.2 56.634 309 129 2 702 1005 635 943 4.84e-108 358
Msa0907570 AT1G07670.2 33.013 833 469 21 123 885 54 867 4.95e-108 361
Msa0907570 AT1G07670.1 33.013 833 469 21 123 885 54 867 4.95e-108 361
Msa0907570 AT1G07810.1 32.862 849 476 22 107 885 43 867 1.15e-107 360
Msa0907570 AT4G00900.2 32.634 858 470 24 95 869 14 846 2.37e-101 343
Msa0907570 AT4G00900.1 32.634 858 470 24 95 869 14 846 2.37e-101 343
Msa0907570 AT1G10130.1 29.059 967 555 26 123 992 32 964 6.83e-88 304
Msa0907570 AT2G24520.3 24.448 589 359 13 233 817 130 636 1.61e-44 175
Msa0907570 AT2G24520.1 24.448 589 359 13 233 817 130 636 1.61e-44 175
Msa0907570 AT2G24520.2 24.448 589 359 13 233 817 193 699 1.72e-44 175
Msa0907570 AT3G42640.1 23.320 759 468 25 79 825 8 664 5.58e-44 173
Msa0907570 AT3G60330.4 24.228 615 366 19 220 825 138 661 5.59e-43 170
Msa0907570 AT3G60330.3 24.228 615 366 19 220 825 138 661 5.59e-43 170
Msa0907570 AT3G60330.2 24.065 615 367 19 220 825 138 661 1.24e-42 169
Msa0907570 AT3G60330.1 24.065 615 367 19 220 825 138 661 1.24e-42 169
Msa0907570 AT1G80660.2 24.272 618 367 19 219 825 10 537 1.83e-42 168
Msa0907570 AT1G80660.3 24.272 618 367 19 219 825 139 666 1.88e-42 168
Msa0907570 AT1G80660.4 24.272 618 367 19 219 825 139 666 2.06e-42 168
Msa0907570 AT1G80660.1 24.110 618 368 18 219 825 139 666 2.42e-42 168
Msa0907570 AT3G47950.1 23.748 619 369 18 219 825 142 669 1.18e-41 166
Msa0907570 AT3G47950.2 23.748 619 369 18 219 825 142 669 1.18e-41 166
Msa0907570 AT2G07560.1 22.647 733 470 22 123 848 44 686 4.35e-41 164
Msa0907570 AT1G17260.1 25.042 595 347 14 233 817 156 661 7.70e-41 163
Msa0907570 AT5G62670.1 23.481 609 383 14 219 825 138 665 1.62e-40 162
Msa0907570 AT4G30190.1 23.428 636 396 15 219 848 134 684 4.96e-40 160
Msa0907570 AT2G18960.3 23.428 636 396 16 219 848 70 620 1.36e-39 159
Msa0907570 AT2G18960.2 23.428 636 396 16 219 848 70 620 1.36e-39 159
Msa0907570 AT2G18960.1 23.428 636 396 16 219 848 134 684 1.73e-39 159
Msa0907570 AT5G57350.4 22.937 606 375 14 219 817 135 655 2.86e-39 158
Msa0907570 AT5G57350.2 22.937 606 375 14 219 817 135 655 2.86e-39 158
Msa0907570 AT5G57350.1 22.937 606 375 14 219 817 135 655 2.86e-39 158
Msa0907570 AT4G30190.2 22.156 668 398 18 219 848 134 717 6.13e-36 148
Msa0907570 AT2G24520.4 23.448 435 276 8 386 817 13 393 9.06e-30 127
Msa0907570 AT5G57350.3 23.570 437 273 10 386 817 13 393 1.87e-28 123
Msa0907570 AT5G23630.1 23.100 671 384 21 173 767 215 829 1.29e-22 105
Msa0907570 AT1G63440.1 30.918 207 108 4 618 822 764 937 1.01e-19 95.9
Msa0907570 AT5G44790.1 31.156 199 104 4 624 822 783 948 3.74e-18 90.9
Msa0907570 AT4G11730.1 21.598 338 223 11 123 455 45 345 1.62e-15 82.0
Msa0907570 AT4G30110.1 27.619 210 112 5 639 848 510 679 3.56e-14 77.8
Msa0907570 AT4G30110.2 27.619 210 112 5 639 848 510 679 3.56e-14 77.8
Msa0907570 AT2G19110.2 26.383 235 131 6 640 874 521 713 9.86e-13 73.2
Msa0907570 AT2G19110.3 26.383 235 131 6 640 874 521 713 9.86e-13 73.2
Msa0907570 AT2G19110.1 26.383 235 131 6 640 874 521 713 9.86e-13 73.2

Find 156 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAGCAGTACAATTATTA+TGG 0.188641 6_2:-6301112 Msa0907570:CDS
TCATGAAAATCTATTGTTCT+AGG 0.192582 6_2:-6303761 Msa0907570:CDS
AAAAGTGATGATCATGATTT+TGG 0.223820 6_2:-6303531 Msa0907570:CDS
TGAGTTTAATGCAAGGAAAT+TGG 0.225227 6_2:-6300829 Msa0907570:CDS
ATTATGGGTGAATTTGATTA+TGG 0.241738 6_2:-6301096 Msa0907570:CDS
GAGAATGATTTAACATTGTT+AGG 0.246491 6_2:-6301835 Msa0907570:CDS
AATAATTGTACTGCTGTTAA+TGG 0.248421 6_2:+6301116 None:intergenic
GTTAGGGCTTGTCGGTATTA+AGG 0.265803 6_2:-6301818 Msa0907570:CDS
AATACTATCTTGGGCTGTTT+TGG 0.275568 6_2:-6302202 Msa0907570:CDS
GAAACCTACTAAGGAATTAA+TGG 0.278646 6_2:-6301042 Msa0907570:CDS
ACTCTCTGCATGTGAGACTA+TGG 0.284040 6_2:-6302587 Msa0907570:CDS
TCCATTTGACAAACTTCTAA+TGG 0.296674 6_2:-6301435 Msa0907570:CDS
TCCCATTGAAAGACCGATAT+CGG 0.305491 6_2:+6301334 None:intergenic
TGTAACTATTCTAATCCTTT+TGG 0.306575 6_2:-6303412 Msa0907570:CDS
CAATGACATTCAAATTGATT+TGG 0.308945 6_2:-6303226 Msa0907570:CDS
AGATGAAGGTGACGAAGTTT+TGG 0.311024 6_2:-6302389 Msa0907570:CDS
TCGAAGTGGTCGTCGGTTAA+AGG 0.314231 6_2:-6303202 Msa0907570:CDS
CTTAAAACCAACATTGAGTT+TGG 0.314281 6_2:-6303558 Msa0907570:CDS
TGGATTATTTGTATTAGTTT+TGG 0.318407 6_2:-6300669 Msa0907570:CDS
GTTCAATGCTTAAAACAAAA+AGG 0.320230 6_2:-6301413 Msa0907570:CDS
CTATAGTAACAGTTCTAAAC+TGG 0.323766 6_2:-6301247 Msa0907570:CDS
TTTGGAGTTGAAAATGGATA+TGG 0.327623 6_2:-6302184 Msa0907570:CDS
GAGTTAACAAAATAACTATT+TGG 0.336053 6_2:+6300943 None:intergenic
TATGGATACATTAGGTGCTT+TGG 0.352422 6_2:-6301078 Msa0907570:CDS
ATTATCAGACTTTGTGTTCC+CGG 0.355749 6_2:+6302795 None:intergenic
CACATAATGTTAGTTATAAG+AGG 0.361954 6_2:+6300993 None:intergenic
CTGGTACAGAAAGGTTGAAT+TGG 0.367852 6_2:-6300698 Msa0907570:CDS
TTATCCATTAATTCCTTAGT+AGG 0.369250 6_2:+6301038 None:intergenic
GGCCATGTAGTTGCTGTAAC+AGG 0.373182 6_2:-6301392 Msa0907570:CDS
AACAGCAGTACAATTATTAT+GGG 0.378279 6_2:-6301111 Msa0907570:CDS
GCTACACTTTCACTTGGCTT+TGG 0.378331 6_2:-6303384 Msa0907570:CDS
GTTTCATCTGTGTCTTGGTT+AGG 0.384819 6_2:+6301545 None:intergenic
AATTTGATTATGGATACATT+AGG 0.389466 6_2:-6301086 Msa0907570:CDS
GTGAATGTCAAAATGATTAC+AGG 0.392744 6_2:-6301742 Msa0907570:intron
GGTGCTGTTTCTTGGCCAAT+TGG 0.393140 6_2:-6300648 Msa0907570:CDS
GCTGATGGATTGTTCGTAGA+TGG 0.395877 6_2:-6303117 Msa0907570:CDS
GATGTGATGAATGCAATTAT+TGG 0.400166 6_2:-6302733 Msa0907570:CDS
GATGTTGTTTGTTTGAAGAT+TGG 0.403237 6_2:-6303153 Msa0907570:CDS
TCAAGATACTATGATGGTTA+TGG 0.406417 6_2:-6302015 Msa0907570:CDS
GCAATTAGGAAACAAGTGTT+TGG 0.412156 6_2:-6303501 Msa0907570:CDS
AGAGGCTTTGTTCTACCAAC+TGG 0.413768 6_2:+6301011 None:intergenic
ATCGATCGGAAAAGTTGGTT+TGG 0.416711 6_2:-6302863 Msa0907570:CDS
ACCATTAGAAGTTTGTCAAA+TGG 0.418812 6_2:+6301434 None:intergenic
CAAAATCATGGTGGAGTTGA+AGG 0.433331 6_2:-6303594 Msa0907570:CDS
CATGAAAATCTATTGTTCTA+GGG 0.434432 6_2:-6303760 Msa0907570:CDS
AGTGTCAATGTCACAGCTAA+TGG 0.439120 6_2:+6302658 None:intergenic
AGAATGATTTAACATTGTTA+GGG 0.439418 6_2:-6301834 Msa0907570:CDS
TATGAGAGTTTCTTGATCAA+TGG 0.439612 6_2:+6303650 None:intergenic
GTTCTTCAATTGATCAAAGA+AGG 0.439661 6_2:-6302315 Msa0907570:CDS
TCCACCGCTGTCTTCACTCC+TGG 0.440031 6_2:+6301784 None:intergenic
AAATTGTTCGCCTTCAACTA+CGG 0.442227 6_2:+6301523 None:intergenic
TCGTCTAGAGCCATTGGAAA+AGG 0.445044 6_2:-6302364 Msa0907570:CDS
ACTATTTGCACCGACAAAAC+AGG 0.445850 6_2:-6302553 Msa0907570:intron
AAAGGTTGAATTGGAGAGAG+TGG 0.448216 6_2:-6300689 Msa0907570:CDS
GGAGTTGCACTCAATACAAC+TGG 0.449947 6_2:-6302294 Msa0907570:CDS
GGGAACACAAAGTCTGATAA+TGG 0.450552 6_2:-6302793 Msa0907570:CDS
TCAATATTTGATATTGTTGT+TGG 0.451599 6_2:-6303177 Msa0907570:CDS
CTCTTGATTCGATATTTCAC+CGG 0.453287 6_2:-6302814 Msa0907570:CDS
CGAAAGCATTATTCAAGGTA+TGG 0.454195 6_2:-6301953 Msa0907570:CDS
AACTTAACAACAAAACCAAT+TGG 0.455892 6_2:+6300633 None:intergenic
AGCCGATATCGGTCTTTCAA+TGG 0.458474 6_2:-6301336 Msa0907570:CDS
CTACGGTTTCATCTGTGTCT+TGG 0.458606 6_2:+6301540 None:intergenic
GTTGATGAATCGAGCATGAC+AGG 0.461070 6_2:-6303081 Msa0907570:CDS
AAATCAACCACGGTGAAAGA+TGG 0.462754 6_2:+6303693 None:intergenic
ATTAAGGATCCGTGTCGTCC+AGG 0.468262 6_2:-6301802 Msa0907570:CDS
ACAGCTAATGGCAAACCCTC+AGG 0.478867 6_2:+6302670 None:intergenic
GTTTGTGCTACACTTTCACT+TGG 0.479286 6_2:-6303390 Msa0907570:CDS
TTCGTAGCCGCGGTTTCAGC+CGG 0.480048 6_2:-6301146 Msa0907570:CDS
GGTCTTTCAATGGGAATTCA+AGG 0.480265 6_2:-6301326 Msa0907570:CDS
TTAACATTGTTAGGGCTTGT+CGG 0.483188 6_2:-6301826 Msa0907570:CDS
TTGATCAATTGAAGAACAGA+TGG 0.483421 6_2:+6302321 None:intergenic
GCCGATATCGGTCTTTCAAT+GGG 0.484090 6_2:-6301335 Msa0907570:CDS
GGTGTTCACAAATCGAAATC+AGG 0.487786 6_2:-6302270 Msa0907570:CDS
TTGGCTTCGTCTAGAGCCAT+TGG 0.488244 6_2:-6302370 Msa0907570:CDS
ACAGATGAAACCGTAGTTGA+AGG 0.494382 6_2:-6301533 Msa0907570:CDS
GTCGTTGTTGCAATCCCTGA+GGG 0.498558 6_2:-6302685 Msa0907570:CDS
TCACAAATCGAAATCAGGTT+CGG 0.498715 6_2:-6302265 Msa0907570:CDS
AGAAATGGTTTATCTGAGAC+AGG 0.500250 6_2:+6300606 None:intergenic
CGGTCGGTATGAACACAACA+TGG 0.505184 6_2:-6302963 Msa0907570:CDS
ACATCATCGATCGGAAAAGT+TGG 0.506466 6_2:-6302868 Msa0907570:CDS
TTGTTAACTCTTCAATTCAA+AGG 0.506553 6_2:-6300930 Msa0907570:CDS
AAATTCGAAAGCATTATTCA+AGG 0.506879 6_2:-6301958 Msa0907570:CDS
GACGAAGAGCTAGGAGATGA+AGG 0.508259 6_2:-6301883 Msa0907570:CDS
ATCGACACACTTCAAAATCA+TGG 0.514173 6_2:-6303606 Msa0907570:CDS
ATCAAAGAAGGTTGGTATGA+TGG 0.518871 6_2:-6303345 Msa0907570:CDS
TGCTGTTAATGGTACTTCAC+CGG 0.520634 6_2:+6301127 None:intergenic
TTTGACACCAAACTCAATGT+TGG 0.521308 6_2:+6303551 None:intergenic
AGGAAACACCTTTGCAAACA+AGG 0.523423 6_2:-6302903 Msa0907570:CDS
GCATTGAAAGAAGCCGATAT+CGG 0.523732 6_2:-6301347 Msa0907570:CDS
ATCACACACACAACAAAAGA+TGG 0.526243 6_2:-6303794 Msa0907570:CDS
CGTCTAGAGCCATTGGAAAA+GGG 0.528591 6_2:-6302363 Msa0907570:CDS
AGAAGTTTGCTGGTACAGAA+AGG 0.529712 6_2:-6300707 Msa0907570:CDS
CTCTTATAACTAACATTATG+TGG 0.531696 6_2:-6300992 Msa0907570:CDS
TGCAACTGAGAAACCTACTA+AGG 0.532195 6_2:-6301051 Msa0907570:CDS
ATATCGGCTTCTTTCAATGC+CGG 0.532373 6_2:+6301350 None:intergenic
AAAGTGTAGCACAAACCAAA+AGG 0.534473 6_2:+6303397 None:intergenic
AACTCAAAGAAGAAAAGAAG+TGG 0.537966 6_2:-6302117 Msa0907570:CDS
AACTCTTCAATTCAAAGGTG+AGG 0.539506 6_2:-6300925 Msa0907570:CDS
CTCTCTGCATGTGAGACTAT+GGG 0.539612 6_2:-6302586 Msa0907570:CDS
GTAGTTGCTGTAACAGGAGA+TGG 0.541746 6_2:-6301386 Msa0907570:CDS
CAAATTGATTTGGTTCGAAG+TGG 0.549306 6_2:-6303216 Msa0907570:CDS
ATTTGGTTCGAAGTGGTCGT+CGG 0.551230 6_2:-6303209 Msa0907570:CDS
GAAGATTGGTGATCAAGTAC+CGG 0.553519 6_2:-6303139 Msa0907570:CDS
AACATGGAATCAAAGAAGGT+TGG 0.557290 6_2:-6303353 Msa0907570:CDS
AAGCAACATGGAATCAAAGA+AGG 0.557387 6_2:-6303357 Msa0907570:CDS
TTATTCAGCCTTGTTTGCAA+AGG 0.558153 6_2:+6302895 None:intergenic
ACCACGGTGAAAGATGGAAT+AGG 0.558812 6_2:+6303699 None:intergenic
CTCCTGTTACAGCAACTACA+TGG 0.559264 6_2:+6301390 None:intergenic
GGTGATCAAGTACCGGCTGA+TGG 0.561728 6_2:-6303132 Msa0907570:CDS
TTATTCAATGAAGAAAATGA+TGG 0.562067 6_2:-6302632 Msa0907570:CDS
GAAGTCGCAGACGAAGAGCT+AGG 0.562705 6_2:-6301892 Msa0907570:CDS
GTCTTCACTCCTGGACGACA+CGG 0.563239 6_2:+6301793 None:intergenic
TTGGAAAGGAGCAGCAGAGA+TGG 0.565912 6_2:-6302052 Msa0907570:CDS
AAAACTATTGCACATTGGAA+AGG 0.568293 6_2:-6302066 Msa0907570:CDS
ATTAGTGCTTCAAGTTGTGA+TGG 0.571604 6_2:-6300742 Msa0907570:CDS
GTGGAAGCTTGCCAACATGC+CGG 0.573699 6_2:-6301766 Msa0907570:CDS
TCTTGATTCGATATTTCACC+GGG 0.580398 6_2:-6302813 Msa0907570:CDS
AGATGGAACAAATGATGCAC+CGG 0.583689 6_2:-6301369 Msa0907570:CDS
ATTTCAACTAACAGTGAATG+TGG 0.583772 6_2:-6301186 Msa0907570:CDS
ACTCACTTTGAATCAGATGA+AGG 0.584042 6_2:-6302403 Msa0907570:CDS
TACTTCACCGGCTGAAACCG+CGG 0.586833 6_2:+6301139 None:intergenic
ACAACAAAACTATTGCACAT+TGG 0.588164 6_2:-6302071 Msa0907570:CDS
TGAAGGAGACAACACAAAGA+TGG 0.588334 6_2:-6301866 Msa0907570:CDS
TATAGTAACAGTTCTAAACT+GGG 0.588805 6_2:-6301246 Msa0907570:CDS
TGACATTCACACCGGCATGT+TGG 0.590504 6_2:+6301755 None:intergenic
ATGTGTTCAAGATACTATGA+TGG 0.592425 6_2:-6302021 Msa0907570:CDS
TCGGGGACAAAAGTTGTCGA+TGG 0.594676 6_2:-6303009 Msa0907570:CDS
AATAAGCTTACATCATCGAT+CGG 0.597099 6_2:-6302877 Msa0907570:CDS
TTCGTCTGCGACTTCAGTAT+AGG 0.605936 6_2:+6301900 None:intergenic
AAAATGCTCGTTACATCGGT+CGG 0.607492 6_2:-6302979 Msa0907570:CDS
AAAGAAGGTTGGTATGATGG+TGG 0.609959 6_2:-6303342 Msa0907570:CDS
TCTACGAACAATCCATCAGC+CGG 0.619777 6_2:+6303120 None:intergenic
CAGCTAATGGCAAACCCTCA+GGG 0.620845 6_2:+6302671 None:intergenic
TGTTATCAATTTCGTAGCCG+CGG 0.628690 6_2:-6301156 Msa0907570:CDS
TGTTTAATGAGTTTAATGCA+AGG 0.630387 6_2:-6300836 Msa0907570:CDS
GGCTTTGGTATCAAGCAACA+TGG 0.632329 6_2:-6303369 Msa0907570:CDS
TGTCGTTGTTGCAATCCCTG+AGG 0.636664 6_2:-6302686 Msa0907570:CDS
ACCTATTCCATCTTTCACCG+TGG 0.659343 6_2:-6303700 Msa0907570:CDS
TTATAACTAACATTATGTGG+AGG 0.663994 6_2:-6300989 Msa0907570:CDS
AATGGAGTTAGAGAATTCAA+CGG 0.666309 6_2:-6302775 Msa0907570:CDS
GGTCGGTATGAACACAACAT+GGG 0.667241 6_2:-6302962 Msa0907570:CDS
AAATAACGATGAAAACAGCA+AGG 0.668443 6_2:+6303310 None:intergenic
TCCAGGAGTGAAGACAGCGG+TGG 0.675734 6_2:-6301785 Msa0907570:CDS
AGGAGACAACACAAAGATGG+TGG 0.676493 6_2:-6301863 Msa0907570:CDS
AAGCATTATTCAAGGTATGG+CGG 0.676719 6_2:-6301950 Msa0907570:CDS
AATGATGGCTGATCAAGCAA+TGG 0.680846 6_2:-6302617 Msa0907570:CDS
GTCGGTATGAACACAACATG+GGG 0.686883 6_2:-6302961 Msa0907570:CDS
TGATCAATGGTAAAAGAGTG+TGG 0.699257 6_2:+6303663 None:intergenic
ATAGTAACAGTTCTAAACTG+GGG 0.703954 6_2:-6301245 Msa0907570:CDS
GTTGCACTCAATACAACTGG+AGG 0.710232 6_2:-6302291 Msa0907570:CDS
AAAGCTATAGCATTTGAATG+CGG 0.720955 6_2:-6301578 Msa0907570:CDS
GACACACTTCAAAATCATGG+TGG 0.722727 6_2:-6303603 Msa0907570:CDS
ATCGAATCAAGAGAACAACC+AGG 0.737268 6_2:+6302824 None:intergenic
TGGTGAATTGAAATCAACCA+CGG 0.764909 6_2:+6303683 None:intergenic
TCGTCCAGGAGTGAAGACAG+CGG 0.774606 6_2:-6301788 Msa0907570:CDS
GATAAGCAATGACATCGACG+AGG 0.796368 6_2:-6302923 Msa0907570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGATTTTTTAAGAAAA+AGG - chr6_2:6301978-6301997 Msa0907570:CDS 10.0%
!!! AAATGAATAAAACTTTTAGA+AGG + chr6_2:6300986-6301005 None:intergenic 15.0%
!!! GAATCAATTATTTTTTCAAA+TGG + chr6_2:6301914-6301933 None:intergenic 15.0%
!! TCAATATTTGATATTGTTGT+TGG - chr6_2:6301262-6301281 Msa0907570:CDS 20.0%
!! TTATTCAATGAAGAAAATGA+TGG - chr6_2:6301807-6301826 Msa0907570:CDS 20.0%
!! AGAATGATTTAACATTGTTA+GGG - chr6_2:6302605-6302624 Msa0907570:CDS 20.0%
!! AATTTGATTATGGATACATT+AGG - chr6_2:6303353-6303372 Msa0907570:CDS 20.0%
!! GAGTTAACAAAATAACTATT+TGG + chr6_2:6303499-6303518 None:intergenic 20.0%
!!! TGGATTATTTGTATTAGTTT+TGG - chr6_2:6303770-6303789 Msa0907570:CDS 20.0%
!! ATACTCAAAAAATCAAGAAA+TGG + chr6_2:6303851-6303870 None:intergenic 20.0%
! TCATGAAAATCTATTGTTCT+AGG - chr6_2:6300678-6300697 Msa0907570:CDS 25.0%
! CATGAAAATCTATTGTTCTA+GGG - chr6_2:6300679-6300698 Msa0907570:CDS 25.0%
!! AAAAGTGATGATCATGATTT+TGG - chr6_2:6300908-6300927 Msa0907570:CDS 25.0%
!!! TGAATAAAACTTTTAGAAGG+TGG + chr6_2:6300983-6301002 None:intergenic 25.0%
!!! TTTTGTTGTTGAAGCTTTTA+AGG - chr6_2:6301003-6301022 Msa0907570:CDS 25.0%
!! TGTAACTATTCTAATCCTTT+TGG - chr6_2:6301027-6301046 Msa0907570:CDS 25.0%
! CAATGACATTCAAATTGATT+TGG - chr6_2:6301213-6301232 Msa0907570:CDS 25.0%
!!! TTTTCATCCTTTTTTGCTTT+CGG - chr6_2:6301411-6301430 Msa0907570:CDS 25.0%
! TTAAGAAAAAGGTTGTAACA+AGG - chr6_2:6301989-6302008 Msa0907570:CDS 25.0%
! AGAAAAAGCAATACTATCTT+GGG - chr6_2:6302228-6302247 Msa0907570:CDS 25.0%
!!! AAATTCGAAAGCATTATTCA+AGG - chr6_2:6302481-6302500 Msa0907570:intron 25.0%
! GAGAATGATTTAACATTGTT+AGG - chr6_2:6302604-6302623 Msa0907570:CDS 25.0%
! GTTCAATGCTTAAAACAAAA+AGG - chr6_2:6303026-6303045 Msa0907570:CDS 25.0%
!!! TATAGTAACAGTTCTAAACT+GGG - chr6_2:6303193-6303212 Msa0907570:CDS 25.0%
! AATAATTGTACTGCTGTTAA+TGG + chr6_2:6303326-6303345 None:intergenic 25.0%
! TAACAGCAGTACAATTATTA+TGG - chr6_2:6303327-6303346 Msa0907570:CDS 25.0%
! AACAGCAGTACAATTATTAT+GGG - chr6_2:6303328-6303347 Msa0907570:CDS 25.0%
! ATTATGGGTGAATTTGATTA+TGG - chr6_2:6303343-6303362 Msa0907570:CDS 25.0%
! TTATCCATTAATTCCTTAGT+AGG + chr6_2:6303404-6303423 None:intergenic 25.0%
!! TTAATGGATAAAAAACCAGT+TGG - chr6_2:6303413-6303432 Msa0907570:CDS 25.0%
! CACATAATGTTAGTTATAAG+AGG + chr6_2:6303449-6303468 None:intergenic 25.0%
! CTCTTATAACTAACATTATG+TGG - chr6_2:6303447-6303466 Msa0907570:CDS 25.0%
! TTATAACTAACATTATGTGG+AGG - chr6_2:6303450-6303469 Msa0907570:CDS 25.0%
! TTGTTAACTCTTCAATTCAA+AGG - chr6_2:6303509-6303528 Msa0907570:CDS 25.0%
! TGTTTAATGAGTTTAATGCA+AGG - chr6_2:6303603-6303622 Msa0907570:CDS 25.0%
!!! AGAAGAAGAATGTTTTTGAA+GGG - chr6_2:6303633-6303652 Msa0907570:CDS 25.0%
!!! TTTTAGAAGCAAGTTGTTTT+TGG - chr6_2:6303658-6303677 Msa0907570:CDS 25.0%
!!! TTTAGAAGCAAGTTGTTTTT+GGG - chr6_2:6303659-6303678 Msa0907570:CDS 25.0%
!!! AAGTTGTTTTTGGGAATTAT+TGG - chr6_2:6303668-6303687 Msa0907570:CDS 25.0%
! AACTTAACAACAAAACCAAT+TGG + chr6_2:6303809-6303828 None:intergenic 25.0%
TATGAGAGTTTCTTGATCAA+TGG + chr6_2:6300792-6300811 None:intergenic 30.0%
CTTAAAACCAACATTGAGTT+TGG - chr6_2:6300881-6300900 Msa0907570:CDS 30.0%
!! ATTTTGGAGACATTGCAATT+AGG - chr6_2:6300924-6300943 Msa0907570:CDS 30.0%
!!! AGGTGGTTTTTTGTAATTGT+TGG + chr6_2:6300966-6300985 None:intergenic 30.0%
AAATAACGATGAAAACAGCA+AGG + chr6_2:6301132-6301151 None:intergenic 30.0%
! GATGTTGTTTGTTTGAAGAT+TGG - chr6_2:6301286-6301305 Msa0907570:CDS 30.0%
!!! TTTCATCCTTTTTTGCTTTC+GGG - chr6_2:6301412-6301431 Msa0907570:CDS 30.0%
AATAAGCTTACATCATCGAT+CGG - chr6_2:6301562-6301581 Msa0907570:CDS 30.0%
AATGGAGTTAGAGAATTCAA+CGG - chr6_2:6301664-6301683 Msa0907570:intron 30.0%
GATGTGATGAATGCAATTAT+TGG - chr6_2:6301706-6301725 Msa0907570:intron 30.0%
!! GGAGTCTTACTTTTGATATT+AGG - chr6_2:6302010-6302029 Msa0907570:CDS 30.0%
TTGATCAATTGAAGAACAGA+TGG + chr6_2:6302121-6302140 None:intergenic 30.0%
GTTCTTCAATTGATCAAAGA+AGG - chr6_2:6302124-6302143 Msa0907570:CDS 30.0%
!!! GATAGTATTGCTTTTTCTGT+TGG + chr6_2:6302226-6302245 None:intergenic 30.0%
CAGAAAAAGCAATACTATCT+TGG - chr6_2:6302227-6302246 Msa0907570:CDS 30.0%
! TTTGGAGTTGAAAATGGATA+TGG - chr6_2:6302255-6302274 Msa0907570:CDS 30.0%
AACTCAAAGAAGAAAAGAAG+TGG - chr6_2:6302322-6302341 Msa0907570:CDS 30.0%
ACAACAAAACTATTGCACAT+TGG - chr6_2:6302368-6302387 Msa0907570:CDS 30.0%
AAAACTATTGCACATTGGAA+AGG - chr6_2:6302373-6302392 Msa0907570:CDS 30.0%
ATGTGTTCAAGATACTATGA+TGG - chr6_2:6302418-6302437 Msa0907570:intron 30.0%
TCAAGATACTATGATGGTTA+TGG - chr6_2:6302424-6302443 Msa0907570:intron 30.0%
!! AATCATTTTGACATTCACAC+CGG + chr6_2:6302695-6302714 None:intergenic 30.0%
GTGAATGTCAAAATGATTAC+AGG - chr6_2:6302697-6302716 Msa0907570:CDS 30.0%
AGACTCGTATGTATAAATAG+AGG + chr6_2:6302784-6302803 None:intergenic 30.0%
CATACGAGTCTATATGAAAA+TGG - chr6_2:6302793-6302812 Msa0907570:CDS 30.0%
CGAACTTTATCTTTGGTTAT+AGG - chr6_2:6302819-6302838 Msa0907570:CDS 30.0%
AAAGCTATAGCATTTGAATG+CGG - chr6_2:6302861-6302880 Msa0907570:CDS 30.0%
AGTCGAAAAAATATCTGTGA+TGG - chr6_2:6302971-6302990 Msa0907570:CDS 30.0%
TCCATTTGACAAACTTCTAA+TGG - chr6_2:6303004-6303023 Msa0907570:CDS 30.0%
ACCATTAGAAGTTTGTCAAA+TGG + chr6_2:6303008-6303027 None:intergenic 30.0%
!! CTATAGTAACAGTTCTAAAC+TGG - chr6_2:6303192-6303211 Msa0907570:CDS 30.0%
!! ATAGTAACAGTTCTAAACTG+GGG - chr6_2:6303194-6303213 Msa0907570:CDS 30.0%
ATTTCAACTAACAGTGAATG+TGG - chr6_2:6303253-6303272 Msa0907570:CDS 30.0%
GAAACCTACTAAGGAATTAA+TGG - chr6_2:6303397-6303416 Msa0907570:CDS 30.0%
! TTCAAAGGTGAGGATATTTT+TGG - chr6_2:6303524-6303543 Msa0907570:CDS 30.0%
!!! TATTTTTGGTGTGACATCAA+AGG - chr6_2:6303538-6303557 Msa0907570:CDS 30.0%
TGAGTTTAATGCAAGGAAAT+TGG - chr6_2:6303610-6303629 Msa0907570:CDS 30.0%
!! GAGAAGAAGAATGTTTTTGA+AGG - chr6_2:6303632-6303651 Msa0907570:CDS 30.0%
!!! TGTGTGTGATTGGTGTTTTT+TGG + chr6_2:6300635-6300654 None:intergenic 35.0%
!! TCTTTTGTTGTGTGTGTGAT+TGG + chr6_2:6300645-6300664 None:intergenic 35.0%
ATCACACACACAACAAAAGA+TGG - chr6_2:6300645-6300664 Msa0907570:CDS 35.0%
!!! AGGTGTGATTTTTGGTTTCT+TGG + chr6_2:6300723-6300742 None:intergenic 35.0%
! GATGGAATAGGTGTGATTTT+TGG + chr6_2:6300731-6300750 None:intergenic 35.0%
TGGTGAATTGAAATCAACCA+CGG + chr6_2:6300759-6300778 None:intergenic 35.0%
TGATCAATGGTAAAAGAGTG+TGG + chr6_2:6300779-6300798 None:intergenic 35.0%
ATCGACACACTTCAAAATCA+TGG - chr6_2:6300833-6300852 Msa0907570:CDS 35.0%
TTTGACACCAAACTCAATGT+TGG + chr6_2:6300891-6300910 None:intergenic 35.0%
GCAATTAGGAAACAAGTGTT+TGG - chr6_2:6300938-6300957 Msa0907570:CDS 35.0%
AAAGTGTAGCACAAACCAAA+AGG + chr6_2:6301045-6301064 None:intergenic 35.0%
AAGCAACATGGAATCAAAGA+AGG - chr6_2:6301082-6301101 Msa0907570:CDS 35.0%
AACATGGAATCAAAGAAGGT+TGG - chr6_2:6301086-6301105 Msa0907570:CDS 35.0%
!! ATCAAAGAAGGTTGGTATGA+TGG - chr6_2:6301094-6301113 Msa0907570:CDS 35.0%
!! CAAATTGATTTGGTTCGAAG+TGG - chr6_2:6301223-6301242 Msa0907570:CDS 35.0%
!!! TTCATCCTTTTTTGCTTTCG+GGG - chr6_2:6301413-6301432 Msa0907570:CDS 35.0%
TGCAAAAATGCTCGTTACAT+CGG - chr6_2:6301456-6301475 Msa0907570:CDS 35.0%
!! TTATTCAGCCTTGTTTGCAA+AGG + chr6_2:6301547-6301566 None:intergenic 35.0%
! CTCTTGATTCGATATTTCAC+CGG - chr6_2:6301625-6301644 Msa0907570:intron 35.0%
! TCTTGATTCGATATTTCACC+GGG - chr6_2:6301626-6301645 Msa0907570:intron 35.0%
ATTATCAGACTTTGTGTTCC+CGG + chr6_2:6301647-6301666 None:intergenic 35.0%
! TCAAATGGTACCTGTTTTGT+CGG + chr6_2:6301899-6301918 None:intergenic 35.0%
ACTCACTTTGAATCAGATGA+AGG - chr6_2:6302036-6302055 Msa0907570:CDS 35.0%
TCACAAATCGAAATCAGGTT+CGG - chr6_2:6302174-6302193 Msa0907570:CDS 35.0%
!! GATTCTGAATTCGAGTTTTC+AGG - chr6_2:6302196-6302215 Msa0907570:CDS 35.0%
! AATACTATCTTGGGCTGTTT+TGG - chr6_2:6302237-6302256 Msa0907570:CDS 35.0%
!! CGAAAGCATTATTCAAGGTA+TGG - chr6_2:6302486-6302505 Msa0907570:intron 35.0%
AAGCATTATTCAAGGTATGG+CGG - chr6_2:6302489-6302508 Msa0907570:intron 35.0%
TTAACATTGTTAGGGCTTGT+CGG - chr6_2:6302613-6302632 Msa0907570:CDS 35.0%
ACGAGTCTATATGAAAATGG+TGG - chr6_2:6302796-6302815 Msa0907570:CDS 35.0%
AAATTGTTCGCCTTCAACTA+CGG + chr6_2:6302919-6302938 None:intergenic 35.0%
TATGGATACATTAGGTGCTT+TGG - chr6_2:6303361-6303380 Msa0907570:CDS 35.0%
AACTCTTCAATTCAAAGGTG+AGG - chr6_2:6303514-6303533 Msa0907570:CDS 35.0%
!! ATTAGTGCTTCAAGTTGTGA+TGG - chr6_2:6303697-6303716 Msa0907570:CDS 35.0%
!! GAGTTTTTGAAGAAGTTTGC+TGG - chr6_2:6303722-6303741 Msa0907570:CDS 35.0%
!!! TTAGTTTTGGTGCTGTTTCT+TGG - chr6_2:6303783-6303802 Msa0907570:CDS 35.0%
! AGAAATGGTTTATCTGAGAC+AGG + chr6_2:6303836-6303855 None:intergenic 35.0%
AAATCAACCACGGTGAAAGA+TGG + chr6_2:6300749-6300768 None:intergenic 40.0%
GACACACTTCAAAATCATGG+TGG - chr6_2:6300836-6300855 Msa0907570:CDS 40.0%
! CAAAATCATGGTGGAGTTGA+AGG - chr6_2:6300845-6300864 Msa0907570:CDS 40.0%
GTTTGTGCTACACTTTCACT+TGG - chr6_2:6301049-6301068 Msa0907570:CDS 40.0%
!! AAAGAAGGTTGGTATGATGG+TGG - chr6_2:6301097-6301116 Msa0907570:CDS 40.0%
! GAAGATTGGTGATCAAGTAC+CGG - chr6_2:6301300-6301319 Msa0907570:CDS 40.0%
TTTGTCCCCGAAAGCAAAAA+AGG + chr6_2:6301421-6301440 None:intergenic 40.0%
AAAATGCTCGTTACATCGGT+CGG - chr6_2:6301460-6301479 Msa0907570:CDS 40.0%
AGGAAACACCTTTGCAAACA+AGG - chr6_2:6301536-6301555 Msa0907570:CDS 40.0%
ACATCATCGATCGGAAAAGT+TGG - chr6_2:6301571-6301590 Msa0907570:CDS 40.0%
! ATCGATCGGAAAAGTTGGTT+TGG - chr6_2:6301576-6301595 Msa0907570:CDS 40.0%
ATCGAATCAAGAGAACAACC+AGG + chr6_2:6301618-6301637 None:intergenic 40.0%
GGGAACACAAAGTCTGATAA+TGG - chr6_2:6301646-6301665 Msa0907570:intron 40.0%
AGTGTCAATGTCACAGCTAA+TGG + chr6_2:6301784-6301803 None:intergenic 40.0%
AATGATGGCTGATCAAGCAA+TGG - chr6_2:6301822-6301841 Msa0907570:CDS 40.0%
! ACTATTTGCACCGACAAAAC+AGG - chr6_2:6301886-6301905 Msa0907570:CDS 40.0%
! AGATGAAGGTGACGAAGTTT+TGG - chr6_2:6302050-6302069 Msa0907570:CDS 40.0%
! GAATATGCACCCTTTTCCAA+TGG + chr6_2:6302088-6302107 None:intergenic 40.0%
GGTGTTCACAAATCGAAATC+AGG - chr6_2:6302169-6302188 Msa0907570:CDS 40.0%
!!! GGCTGTTTTGGAGTTGAAAA+TGG - chr6_2:6302249-6302268 Msa0907570:CDS 40.0%
!!! GAAGTGGAGTTTTGTTGAGA+AGG - chr6_2:6302338-6302357 Msa0907570:CDS 40.0%
TGAAGGAGACAACACAAAGA+TGG - chr6_2:6302573-6302592 Msa0907570:CDS 40.0%
! ATGGTGGCGAACTTTATCTT+TGG - chr6_2:6302812-6302831 Msa0907570:CDS 40.0%
GTTTCATCTGTGTCTTGGTT+AGG + chr6_2:6302897-6302916 None:intergenic 40.0%
ACAGATGAAACCGTAGTTGA+AGG - chr6_2:6302906-6302925 Msa0907570:CDS 40.0%
AGATGGAACAAATGATGCAC+CGG - chr6_2:6303070-6303089 Msa0907570:CDS 40.0%
!! ATATCGGCTTCTTTCAATGC+CGG + chr6_2:6303092-6303111 None:intergenic 40.0%
GCATTGAAAGAAGCCGATAT+CGG - chr6_2:6303092-6303111 Msa0907570:CDS 40.0%
TCCCATTGAAAGACCGATAT+CGG + chr6_2:6303108-6303127 None:intergenic 40.0%
GGTCTTTCAATGGGAATTCA+AGG - chr6_2:6303113-6303132 Msa0907570:CDS 40.0%
TGTTATCAATTTCGTAGCCG+CGG - chr6_2:6303283-6303302 Msa0907570:CDS 40.0%
TGCTGTTAATGGTACTTCAC+CGG + chr6_2:6303315-6303334 None:intergenic 40.0%
TGCAACTGAGAAACCTACTA+AGG - chr6_2:6303388-6303407 Msa0907570:CDS 40.0%
!! AGAAGTTTGCTGGTACAGAA+AGG - chr6_2:6303732-6303751 Msa0907570:CDS 40.0%
CTGGTACAGAAAGGTTGAAT+TGG - chr6_2:6303741-6303760 Msa0907570:CDS 40.0%
AAAGGTTGAATTGGAGAGAG+TGG - chr6_2:6303750-6303769 Msa0907570:CDS 40.0%
ACCTATTCCATCTTTCACCG+TGG - chr6_2:6300739-6300758 Msa0907570:CDS 45.0%
ACCACGGTGAAAGATGGAAT+AGG + chr6_2:6300743-6300762 None:intergenic 45.0%
GCTACACTTTCACTTGGCTT+TGG - chr6_2:6301055-6301074 Msa0907570:CDS 45.0%
! GGCTTTGGTATCAAGCAACA+TGG - chr6_2:6301070-6301089 Msa0907570:CDS 45.0%
! ATTTGGTTCGAAGTGGTCGT+CGG - chr6_2:6301230-6301249 Msa0907570:CDS 45.0%
TCTACGAACAATCCATCAGC+CGG + chr6_2:6301322-6301341 None:intergenic 45.0%
!! GCTGATGGATTGTTCGTAGA+TGG - chr6_2:6301322-6301341 Msa0907570:CDS 45.0%
! GTTGATGAATCGAGCATGAC+AGG - chr6_2:6301358-6301377 Msa0907570:CDS 45.0%
GGTCGGTATGAACACAACAT+GGG - chr6_2:6301477-6301496 Msa0907570:CDS 45.0%
GTCGGTATGAACACAACATG+GGG - chr6_2:6301478-6301497 Msa0907570:CDS 45.0%
GATAAGCAATGACATCGACG+AGG - chr6_2:6301516-6301535 Msa0907570:CDS 45.0%
ACTCTCTGCATGTGAGACTA+TGG - chr6_2:6301852-6301871 Msa0907570:CDS 45.0%
CTCTCTGCATGTGAGACTAT+GGG - chr6_2:6301853-6301872 Msa0907570:CDS 45.0%
! TCGTCTAGAGCCATTGGAAA+AGG - chr6_2:6302075-6302094 Msa0907570:CDS 45.0%
! CGTCTAGAGCCATTGGAAAA+GGG - chr6_2:6302076-6302095 Msa0907570:CDS 45.0%
GGAGTTGCACTCAATACAAC+TGG - chr6_2:6302145-6302164 Msa0907570:CDS 45.0%
GTTGCACTCAATACAACTGG+AGG - chr6_2:6302148-6302167 Msa0907570:CDS 45.0%
TTCGTCTGCGACTTCAGTAT+AGG + chr6_2:6302542-6302561 None:intergenic 45.0%
AGGAGACAACACAAAGATGG+TGG - chr6_2:6302576-6302595 Msa0907570:CDS 45.0%
GTTAGGGCTTGTCGGTATTA+AGG - chr6_2:6302621-6302640 Msa0907570:CDS 45.0%
CTACGGTTTCATCTGTGTCT+TGG + chr6_2:6302902-6302921 None:intergenic 45.0%
CTCCTGTTACAGCAACTACA+TGG + chr6_2:6303052-6303071 None:intergenic 45.0%
GTAGTTGCTGTAACAGGAGA+TGG - chr6_2:6303053-6303072 Msa0907570:CDS 45.0%
AGCCGATATCGGTCTTTCAA+TGG - chr6_2:6303103-6303122 Msa0907570:CDS 45.0%
GCCGATATCGGTCTTTCAAT+GGG - chr6_2:6303104-6303123 Msa0907570:CDS 45.0%
!! AGAGGCTTTGTTCTACCAAC+TGG + chr6_2:6303431-6303450 None:intergenic 45.0%
! TCGAAGTGGTCGTCGGTTAA+AGG - chr6_2:6301237-6301256 Msa0907570:CDS 50.0%
TCGGGGACAAAAGTTGTCGA+TGG - chr6_2:6301430-6301449 Msa0907570:CDS 50.0%
CGGTCGGTATGAACACAACA+TGG - chr6_2:6301476-6301495 Msa0907570:CDS 50.0%
!!! GGTTGTCGCGTTTTTAGTCC+TGG - chr6_2:6301597-6301616 Msa0907570:CDS 50.0%
TGTCGTTGTTGCAATCCCTG+AGG - chr6_2:6301753-6301772 Msa0907570:CDS 50.0%
GTCGTTGTTGCAATCCCTGA+GGG - chr6_2:6301754-6301773 Msa0907570:CDS 50.0%
CAGCTAATGGCAAACCCTCA+GGG + chr6_2:6301771-6301790 None:intergenic 50.0%
ACAGCTAATGGCAAACCCTC+AGG + chr6_2:6301772-6301791 None:intergenic 50.0%
! TTGGCTTCGTCTAGAGCCAT+TGG - chr6_2:6302069-6302088 Msa0907570:CDS 50.0%
TTGGAAAGGAGCAGCAGAGA+TGG - chr6_2:6302387-6302406 Msa0907570:CDS 50.0%
GACGAAGAGCTAGGAGATGA+AGG - chr6_2:6302556-6302575 Msa0907570:CDS 50.0%
ATTAAGGATCCGTGTCGTCC+AGG - chr6_2:6302637-6302656 Msa0907570:CDS 50.0%
TGACATTCACACCGGCATGT+TGG + chr6_2:6302687-6302706 None:intergenic 50.0%
GGCCATGTAGTTGCTGTAAC+AGG - chr6_2:6303047-6303066 Msa0907570:CDS 50.0%
!! GGTGCTGTTTCTTGGCCAAT+TGG - chr6_2:6303791-6303810 Msa0907570:CDS 50.0%
!! GGTGATCAAGTACCGGCTGA+TGG - chr6_2:6301307-6301326 Msa0907570:CDS 55.0%
GAAGTCGCAGACGAAGAGCT+AGG - chr6_2:6302547-6302566 Msa0907570:intron 55.0%
GTCTTCACTCCTGGACGACA+CGG + chr6_2:6302649-6302668 None:intergenic 55.0%
TCGTCCAGGAGTGAAGACAG+CGG - chr6_2:6302651-6302670 Msa0907570:CDS 55.0%
GTGGAAGCTTGCCAACATGC+CGG - chr6_2:6302673-6302692 Msa0907570:CDS 55.0%
! TACTTCACCGGCTGAAACCG+CGG + chr6_2:6303303-6303322 None:intergenic 55.0%
TCCAGGAGTGAAGACAGCGG+TGG - chr6_2:6302654-6302673 Msa0907570:CDS 60.0%
TCCACCGCTGTCTTCACTCC+TGG + chr6_2:6302658-6302677 None:intergenic 60.0%
TTCGTAGCCGCGGTTTCAGC+CGG - chr6_2:6303293-6303312 Msa0907570:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 6300578 6303883 6300578 ID=Msa0907570;Name=Msa0907570
chr6_2 mRNA 6300578 6303883 6300578 ID=Msa0907570-mRNA-1;Parent=Msa0907570;Name=Msa0907570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|3|0|1019
chr6_2 exon 6302554 6303883 6302554 ID=Msa0907570-mRNA-1:exon:1977;Parent=Msa0907570-mRNA-1
chr6_2 exon 6301743 6302429 6301743 ID=Msa0907570-mRNA-1:exon:1976;Parent=Msa0907570-mRNA-1
chr6_2 exon 6300578 6301620 6300578 ID=Msa0907570-mRNA-1:exon:1975;Parent=Msa0907570-mRNA-1
chr6_2 CDS 6302554 6303883 6302554 ID=Msa0907570-mRNA-1:cds;Parent=Msa0907570-mRNA-1
chr6_2 CDS 6301743 6302429 6301743 ID=Msa0907570-mRNA-1:cds;Parent=Msa0907570-mRNA-1
chr6_2 CDS 6300578 6301620 6300578 ID=Msa0907570-mRNA-1:cds;Parent=Msa0907570-mRNA-1
Gene Sequence

>Msa0907570

ATGTCAATGACATTTTTCACAAACATGAACGACATTGAGACACTTCTCAATGCACCAAAAAACACCAATCACACACACAACAAAAGATGGCACAATGCTTTCATGAAAATCTATTGTTCTAGGGCTTTCATGTCACATTTTACCAAGAAACCAAAAATCACACCTATTCCATCTTTCACCGTGGTTGATTTCAATTCACCACACTCTTTTACCATTGATCAAGAAACTCTCATAGATATTGTCAAAGAGAAAAACATCGACACACTTCAAAATCATGGTGGAGTTGAAGGTGTTGCTTCATCACTTAAAACCAACATTGAGTTTGGTGTCAAAAGTGATGATCATGATTTTGGAGACATTGCAATTAGGAAACAAGTGTTTGGTTCCAACAATTACAAAAAACCACCTTCTAAAAGTTTTATTCATTTTGTTGTTGAAGCTTTTAAGGATGTAACTATTCTAATCCTTTTGGTTTGTGCTACACTTTCACTTGGCTTTGGTATCAAGCAACATGGAATCAAAGAAGGTTGGTATGATGGTGGTAGCATTTTCCTTGCTGTTTTCATCGTTATTTCGATGTCATCAATAAGCAACTTCAAACAAAACAAACAATTTGATAAATTGTCTCAAGTTAGCAATGACATTCAAATTGATTTGGTTCGAAGTGGTCGTCGGTTAAAGGTATCAATATTTGATATTGTTGTTGGTGATGTTGTTTGTTTGAAGATTGGTGATCAAGTACCGGCTGATGGATTGTTCGTAGATGGACATTCGTTGAGAGTTGATGAATCGAGCATGACAGGTGAGAGCGATCATGTAGAGATAAATCGAAATTTTCATCCTTTTTTGCTTTCGGGGACAAAAGTTGTCGATGGATATGCAAAAATGCTCGTTACATCGGTCGGTATGAACACAACATGGGGACAAATGATGAGTTCGATAAGCAATGACATCGACGAGGAAACACCTTTGCAAACAAGGCTGAATAAGCTTACATCATCGATCGGAAAAGTTGGTTTGGTTGTCGCGTTTTTAGTCCTGGTTGTTCTCTTGATTCGATATTTCACCGGGAACACAAAGTCTGATAATGGAGTTAGAGAATTCAACGGTAGAAAGACTAGTTTTGATGATGTGATGAATGCAATTATTGGAATTATTGCTGATGCTGTTACTATTGTCGTTGTTGCAATCCCTGAGGGTTTGCCATTAGCTGTGACATTGACACTTGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCAATGGTGAGAAAACTCTCTGCATGTGAGACTATGGGATCTGCTACTACTATTTGCACCGACAAAACAGGTACACTCACTTTGAATCAGATGAAGGTGACGAAGTTTTGGCTTCGTCTAGAGCCATTGGAAAAGGGTGCATATTCAAATGTTGATCCATCTGTTCTTCAATTGATCAAAGAAGGAGTTGCACTCAATACAACTGGAGGTGTTCACAAATCGAAATCAGGTTCGGATTCTGAATTCGAGTTTTCAGGAAGTCCAACAGAAAAAGCAATACTATCTTGGGCTGTTTTGGAGTTGAAAATGGATATGGAGCACTTGACAAAAAGTTGTTCTATTATTCAAGTTGAGACTTTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTGAGAAGGAATGTTGACAACAAAACTATTGCACATTGGAAAGGAGCAGCAGAGATGGTACTAAGAATGTGTTCAAGATACTATGATGGTTATGGAATTTTGAAAGATCTTGACAATGAATCTATGCTGAAATTCGAAAGCATTATTCAAGGTATGGCGGCTAGTAGTCTTCGTTGCATCGCTTTAGCCTATACTGAAGTCGCAGACGAAGAGCTAGGAGATGAAGGAGACAACACAAAGATGGTGGTAAAAGAGAATGATTTAACATTGTTAGGGCTTGTCGGTATTAAGGATCCGTGTCGTCCAGGAGTGAAGACAGCGGTGGAAGCTTGCCAACATGCCGGTGTGAATGTCAAAATGATTACAGGTGACAATGTTTTCACTGCAAAAGCTATAGCATTTGAATGCGGAATTCTTCAACCTAACCAAGACACAGATGAAACCGTAGTTGAAGGCGAACAATTTCGCAACTTTACGCATGAAGAGAGATTAGAAAAAGTCGAAAAAATATCTGTGATGGCAAGATCTTCTCCATTTGACAAACTTCTAATGGTTCAATGCTTAAAACAAAAAGGCCATGTAGTTGCTGTAACAGGAGATGGAACAAATGATGCACCGGCATTGAAAGAAGCCGATATCGGTCTTTCAATGGGAATTCAAGGTACAGAAGTAGCAAAAGAGAGTTCAGATATCGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTCTAAACTGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAACTAACAGTGAATGTGGCAGCACTTGTTATCAATTTCGTAGCCGCGGTTTCAGCCGGTGAAGTACCATTAACAGCAGTACAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCTTTGGCTCTTGCAACTGAGAAACCTACTAAGGAATTAATGGATAAAAAACCAGTTGGTAGAACAAAGCCTCTTATAACTAACATTATGTGGAGGAATCTTGCGTCACAAGCTTTGTACCAAATAGTTATTTTGTTAACTCTTCAATTCAAAGGTGAGGATATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATATTTAATACATTTGTTCTATGTCAAGTGTTTAATGAGTTTAATGCAAGGAAATTGGAGAAGAAGAATGTTTTTGAAGGGATTTTTAGAAGCAAGTTGTTTTTGGGAATTATTGGTGTGACATTAGTGCTTCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTGCTGGTACAGAAAGGTTGAATTGGAGAGAGTGGATTATTTGTATTAGTTTTGGTGCTGTTTCTTGGCCAATTGGTTTTGTTGTTAAGTTGATTCCTGTCTCAGATAAACCATTTCTTGATTTTTTGAGTATGAAGAAGACTTAG
Protein sequence

>Msa0907570

MSMTFFTNMNDIETLLNAPKNTNHTHNKRWHNAFMKIYCSRAFMSHFTKKPKITPIPSFTVVDFNSPHSFTIDQETLIDIVKEKNIDTLQNHGGVEGVASSLKTNIEFGVKSDDHDFGDIAIRKQVFGSNNYKKPPSKSFIHFVVEAFKDVTILILLVCATLSLGFGIKQHGIKEGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRLKVSIFDIVVGDVVCLKIGDQVPADGLFVDGHSLRVDESSMTGESDHVEINRNFHPFLLSGTKVVDGYAKMLVTSVGMNTTWGQMMSSISNDIDEETPLQTRLNKLTSSIGKVGLVVAFLVLVVLLIRYFTGNTKSDNGVREFNGRKTSFDDVMNAIIGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLRLEPLEKGAYSNVDPSVLQLIKEGVALNTTGGVHKSKSGSDSEFEFSGSPTEKAILSWAVLELKMDMEHLTKSCSIIQVETFNSKKKRSGVLLRRNVDNKTIAHWKGAAEMVLRMCSRYYDGYGILKDLDNESMLKFESIIQGMAASSLRCIALAYTEVADEELGDEGDNTKMVVKENDLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNVFTAKAIAFECGILQPNQDTDETVVEGEQFRNFTHEERLEKVEKISVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDKKPVGRTKPLITNIMWRNLASQALYQIVILLTLQFKGEDIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFRSKLFLGIIGVTLVLQVVMVEFLKKFAGTERLNWREWIICISFGAVSWPIGFVVKLIPVSDKPFLDFLSMKKT*