AlfalfaGEDB | Msa0915780

M. sativa cultivar zhongmu-4 / Msa0915780

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010118 GO:0010167 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042126 GO:0042128 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071941 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001057 GO:2001141
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0915780	XP_013443315.1	96.655	867	19	1	1	867	1	857	0.0	1743

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0915780	sp\|Q84TH9\|NLP7_ARATH	51.829	957	305	19	34	867	35	958	0.0	882

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0915780	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0283910	Msa0915780	0.803642	3.162086e-49	-8.615850e-47
Msa0915780	Msa0915840	0.974741	1.082129e-138	-8.615850e-47
Msa0915780	Msa0915880	0.881964	1.549001e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0915780	MtrunA17_Chr6g0472281	96.655	867	19	1	1	867	1	857	0.0	1743
Msa0915780	MtrunA17_Chr1g0203081	68.428	719	182	10	1	702	1	691	0.0	959
Msa0915780	MtrunA17_Chr1g0203081	66.102	177	53	3	698	867	803	979	4.11e-60	221
Msa0915780	MtrunA17_Chr3g0143921	37.157	802	421	20	112	863	139	907	2.36e-143	447
Msa0915780	MtrunA17_Chr2g0329671	39.737	609	305	15	84	677	137	698	2.93e-119	385
Msa0915780	MtrunA17_Chr2g0329671	34.783	138	90	0	728	865	820	957	2.27e-19	94.0
Msa0915780	MtrunA17_Chr4g0033791	40.105	571	276	15	112	668	147	665	6.52e-114	369
Msa0915780	MtrunA17_Chr4g0033791	44.444	81	45	0	774	854	826	906	2.62e-18	90.5
Msa0915780	MtrunA17_Chr5g0448621	32.915	398	214	9	87	476	98	450	3.15e-48	185
Msa0915780	MtrunA17_Chr5g0448621	35.948	306	161	5	575	849	608	909	3.00e-43	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0915780	AT4G24020.1	51.829	957	305	19	34	867	35	958	0.0	882
Msa0915780	AT1G64530.1	52.418	889	317	20	28	867	5	836	0.0	858
Msa0915780	AT1G64530.2	54.297	733	247	16	167	867	5	681	0.0	735
Msa0915780	AT4G24020.2	50.633	711	229	15	246	867	1	678	0.0	625
Msa0915780	AT1G76350.2	34.994	843	460	23	18	838	1	777	2.48e-145	449
Msa0915780	AT1G76350.1	34.994	843	460	23	18	838	1	777	2.48e-145	449
Msa0915780	AT1G76350.4	34.994	843	460	23	18	838	1	777	2.48e-145	449
Msa0915780	AT1G76350.3	34.994	843	460	23	18	838	1	777	2.48e-145	449
Msa0915780	AT2G43500.3	34.204	842	439	21	90	866	137	928	9.50e-141	441
Msa0915780	AT2G43500.9	34.204	842	439	21	90	866	137	928	9.50e-141	441

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Find 187 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTCTATGCCTGCA+TGG	0.651967	6_2:-33352142	None:intergenic
AAAAGACTGAAACTAGAGGT+AGG	0.550081	6_2:+33353964	Msa0915780:CDS
AAAATCCAGTTCCTTATGGG+AGG	0.647427	6_2:+33354359	Msa0915780:three_prime_UTR
AAACCGTCGTTGAGAAAACG+CGG	0.713944	6_2:+33352880	Msa0915780:CDS
AAACTCATGAGAATGAGGAA+AGG	0.682287	6_2:+33354653	Msa0915780:three_prime_UTR
AAAGACTGAAACTAGAGGTA+GGG	0.584078	6_2:+33353965	Msa0915780:CDS
AAAGGTGGTAGAGCTATATG+GGG	0.722178	6_2:-33350449	None:intergenic
AAAGTCAATATCATAATCCA+TGG	0.524649	6_2:-33348809	None:intergenic
AAAGTCCAAATAGGAGAAAA+AGG	0.324979	6_2:-33348904	None:intergenic
AAATATCATGCACAACAAGC+CGG	0.597148	6_2:-33354098	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCCAAATAGGAGAAAA+AGG	-	chr6_2:33348907-33348926	None:intergenic	30.0%
TCATCAGAAAAAGTCCAAAT+AGG	-	chr6_2:33348916-33348935	None:intergenic	30.0%
AATTGATTGAGAAATCCAAG+AGG	+	chr6_2:33349069-33349088	Msa0915780:intron	30.0%
ATTGATTGAGAAATCCAAGA+GGG	+	chr6_2:33349070-33349089	Msa0915780:intron	30.0%
TCGAAACTTCAACAAAATCA+CGG	-	chr6_2:33349283-33349302	None:intergenic	30.0%
GTTTGAATTGACAATGAGTT+TGG	-	chr6_2:33349349-33349368	None:intergenic	30.0%
AATGGAATAAACATGCAGAA+AGG	-	chr6_2:33349629-33349648	None:intergenic	30.0%
TTTCTGCATGTTTATTCCAT+TGG	+	chr6_2:33349628-33349647	Msa0915780:intron	30.0%
TCAAACTATTCCATATTCAC+AGG	+	chr6_2:33349689-33349708	Msa0915780:intron	30.0%
CAGGAATTATAGACAAAATC+TGG	-	chr6_2:33349715-33349734	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	33348635	33354765	33348635	ID=Msa0915780;Name=Msa0915780
chr6_2	mRNA	33348635	33354765	33348635	ID=Msa0915780-mRNA-1;Parent=Msa0915780;Name=Msa0915780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=104\|0.75\|0.8\|1\|1\|1\|5\|604\|867
chr6_2	exon	33348635	33348958	33348635	ID=Msa0915780-mRNA-1:exon:5914;Parent=Msa0915780-mRNA-1
chr6_2	exon	33350384	33350958	33350384	ID=Msa0915780-mRNA-1:exon:5915;Parent=Msa0915780-mRNA-1
chr6_2	exon	33351463	33351510	33351463	ID=Msa0915780-mRNA-1:exon:5916;Parent=Msa0915780-mRNA-1
chr6_2	exon	33352013	33352985	33352013	ID=Msa0915780-mRNA-1:exon:5917;Parent=Msa0915780-mRNA-1
chr6_2	exon	33353374	33354765	33353374	ID=Msa0915780-mRNA-1:exon:5918;Parent=Msa0915780-mRNA-1
chr6_2	five_prime_UTR	33348635	33348738	33348635	ID=Msa0915780-mRNA-1:five_prime_utr;Parent=Msa0915780-mRNA-1
chr6_2	CDS	33348739	33348958	33348739	ID=Msa0915780-mRNA-1:cds;Parent=Msa0915780-mRNA-1
chr6_2	CDS	33350384	33350958	33350384	ID=Msa0915780-mRNA-1:cds;Parent=Msa0915780-mRNA-1
chr6_2	CDS	33351463	33351510	33351463	ID=Msa0915780-mRNA-1:cds;Parent=Msa0915780-mRNA-1
chr6_2	CDS	33352013	33352985	33352013	ID=Msa0915780-mRNA-1:cds;Parent=Msa0915780-mRNA-1
chr6_2	CDS	33353374	33354161	33353374	ID=Msa0915780-mRNA-1:cds;Parent=Msa0915780-mRNA-1
chr6_2	three_prime_UTR	33354162	33354765	33354162	ID=Msa0915780-mRNA-1:three_prime_utr;Parent=Msa0915780-mRNA-1

Gene Sequence

>Msa0915780

ATGCAAGAGTCAGAAGAAGAAAATCATGTCCTTCCTCAAAAGTCAAAGCCACTAGATGAAAATGTGTTTTCCATGGATTATGATATTGACTTTGAAACTTCATGGCCTTTGGATCATGTATCTAACTCCATGCATCCTTTTTTCTTGCAAAATATCTCTGAACAACCTTTTTCTCCTATTTGGACTTTTTCTGATGATGATCACAACATTGCAGCTTCAGGTAACAACAAAAACATAATAACTGAAAACCGAGTCGAAAATGATGACAAGCAAAAACATGTGACACCCCATATAGCTCTACCACCTTTACAAAACCCACATGGTTATTGCCTAATCAAGGAAAGAATGACACAAGCTCTTAGAAACTTCAAAGAGTTAACTGAACTGAATGTTCTTGCTCAAGTTTGGGCGCCCGTGAGGAACGGAAGTCGGTATAAACTCACGACTTCAGGCCAACCATTTGTTCTGGATGCACATAGTAATGGACTTCATCAGTACAGAACTGTTTCTTTGATGTATATGTTTTCTGTTGACGGAGAAAACGACGAAGTTTTAGGACTTCCTGGAAGAGTTTTTCAGCAGAAGTTACCTGAATGGACTCCTAATGTTCAGTATTATTCTAGTAAAGAGTATTCAAGGCTAAACCATGCTCTACATTATAATGTCCGCGGAACTTTGGCTTTGCCGGTGTTTGAACCTCCAGGACAATCATGTGTTGCTGTGTTGGAATTGATTATGACTTCACAGAAGATTAACTATGCTCCTGAAGTGGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGTTGAATAACATGGCAATTCTTTTAAACCAGATATGTAACGAAGATAGACAGAATGCATTATCTGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTTTGGCACAAACATGGGTTCCATGCAGGCATAGAAGTGTTTTGGCTCATGGTGGTGGTCTAAAGAAAAATTGCTCAAGTTTTGATGGTTATTGTATGGGACAAGTTTGCATGTCAATAACCGAGGTAGCATTCTATATCATAGATTCTCACACATGGGGTTTCCATGATGCATGTGTTGAACATCACTTACAACAAGGTCAAGGAGTTGCCGGAAGAGCTTTTTTGTCACAAAACATGTGTTTCTGTGGAAACATTACTCAATTCTGCAAAACCGATTACCCTTTAGTACACTATGCTCTCATGTTTGATTTAACAAGCTCTTTTTCAATATGTTTACAAAGCTCTCATACCGGAAGTGATGATTATGTACTAGAGTTTTTTCTTCCTCCTAGTATCAATAAATTTTGTGAACAAAAGGGTTTGTTAGGATCAATATTGGCAACAATGAAACAAAATTTCCAAAGTCTTAAGGTTGCTTCTGGCGTTCAACTTGAGGAGGATGGATCAATTGAAATTGTTGAAATAATAAATGGAACAGTTCATTCGAGGCTTGAATCAGTTCCGATTATTCAATCTACTAAATTATCAGCTAGACATGATGATGCCTCGCCGGATATGGAGGAGGGAGTGCCACTAGATCAATCACGACAGAAAATAATCACAAATTTTGATGACATAAATGATATAGGGAATCTTGATGATTTTGCAGGTGGAAGCATTGATCAGATCCCTTCCTTGAAGACTGAAACCAAAAAGAAACCGTCGTTGAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGAAGTCTTGCAAGATTATTTCAGTGGGAGTCTAAAGGATGCTGCAAAGAGCCTAGGAGTTTGTCCAACTACAATGAAGCGAATCTGCAGGCAGCACGGAATATCCCGTTGGCCTTCTCGAAAGATCAAAAAGGTTAACCGTTCGCTGTCCAAGCTCAAATGTGTGATTGAATCGGTCCACGGTGTTGAAGGAGCATTTGGTTTGGATTCTCCAAGTACAAGCACACTCCCTATTGCTGCTGGTTCCTTTAATGAACCTTCTACTTCGAACAAGTTTGAACACCATACCTCATTAAGCATAATGCCATCAGAACCTAAGAAGAACGAAAATTATTTAGATGCGTCTAAATCAGAACCTCAAGAACCATTTGGAGGAATGCTAATCGAAGGTGCTGATAGTTCTAAAGACTTGAAAAATATGTGTCCTTCAACAGATGTTATTTTGGAGGATCAGGTCCTAGAAGCTTCAAGGATTCATCCTCCATGTTCCGATTTTGTTCCGATGCAAATGCAGCACATGGATACTCTTAATTTTGCAGCTCAGAAAGAGATGAAGATTGTGACTATAAAGGCAACATATAGAGATGATATCATAAGGTTTAGGGTTTCTTTGAACTGTGGCATTGTGGAATTGAGAGAGGAAATTGCTAAAAGACTGAAACTAGAGGTAGGGACATTTGATATCAAGTATTTGGATGATGATCAAGAGTGGATATTGGTAGCTTGTGATGCAGATTTGCAGGAGTGCATGGACATTTTAACATTATCAGGAAGCAACATTATCCGGCTTGTTGTGCATGATATTTTGTCCATTCTTGGAAGCTCGGTTGAGAGCTCGGGGGAGTGA

Protein sequence

>Msa0915780

MQESEEENHVLPQKSKPLDENVFSMDYDIDFETSWPLDHVSNSMHPFFLQNISEQPFSPIWTFSDDDHNIAASGNNKNIITENRVENDDKQKHVTPHIALPPLQNPHGYCLIKERMTQALRNFKELTELNVLAQVWAPVRNGSRYKLTTSGQPFVLDAHSNGLHQYRTVSLMYMFSVDGENDEVLGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYSQLNNMAILLNQICNEDRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKNCSSFDGYCMGQVCMSITEVAFYIIDSHTWGFHDACVEHHLQQGQGVAGRAFLSQNMCFCGNITQFCKTDYPLVHYALMFDLTSSFSICLQSSHTGSDDYVLEFFLPPSINKFCEQKGLLGSILATMKQNFQSLKVASGVQLEEDGSIEIVEIINGTVHSRLESVPIIQSTKLSARHDDASPDMEEGVPLDQSRQKIITNFDDINDIGNLDDFAGGSIDQIPSLKTETKKKPSLRKRGKAEKSISLEVLQDYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGVEGAFGLDSPSTSTLPIAAGSFNEPSTSNKFEHHTSLSIMPSEPKKNENYLDASKSEPQEPFGGMLIEGADSSKDLKNMCPSTDVILEDQVLEASRIHPPCSDFVPMQMQHMDTLNFAAQKEMKIVTIKATYRDDIIRFRVSLNCGIVELREEIAKRLKLEVGTFDIKYLDDDQEWILVACDADLQECMDILTLSGSNIIRLVVHDILSILGSSVESSGE*