AlfalfaGEDB | Msa0919480

M. sativa cultivar zhongmu-4 / Msa0919480

KEGG: -
GO: -
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0919480	XP_003619538.1	91.128	913	79	1	13	923	2	914	0.0	1680

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0919480	sp\|Q9M0X5\|CRK25_ARATH	44.091	660	337	10	289	923	23	675	9.92e-174	523
Msa0919480	sp\|Q9M0X5\|CRK25_ARATH	39.600	250	139	6	18	261	5	248	1.13e-44	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0892520	Msa0919480	0.857662	1.400702e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0919480	MtrunA17_Chr6g0475111	91.128	913	79	1	13	923	2	914	0.0	1680
Msa0919480	MtrunA17_Chr8g0347571	80.044	912	164	6	15	923	1	897	0.0	1486
Msa0919480	MtrunA17_Chr6g0474901	58.086	909	346	11	24	923	12	894	0.0	1013
Msa0919480	MtrunA17_Chr6g0475091	57.912	891	351	12	41	922	33	908	0.0	994
Msa0919480	MtrunA17_Chr6g0474811	56.338	923	355	14	25	923	3	901	0.0	987
Msa0919480	MtrunA17_Chr6g0475201	58.190	873	342	12	19	882	3	861	0.0	980
Msa0919480	MtrunA17_Chr6g0474871	55.788	907	369	10	24	923	12	893	0.0	955
Msa0919480	MtrunA17_Chr6g0475001	55.652	690	280	10	22	704	10	680	0.0	737
Msa0919480	MtrunA17_Chr6g0474861	52.730	641	247	6	290	923	23	614	0.0	638
Msa0919480	MtrunA17_Chr6g0474861	41.975	243	133	4	24	265	12	247	3.74e-52	193

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0919480	AT4G05200.1	44.091	660	337	10	289	923	23	675	1.01e-174	523
Msa0919480	AT4G05200.1	39.600	250	139	6	18	261	5	248	1.15e-45	176
Msa0919480	AT4G05200.2	44.091	660	337	10	289	923	41	693	1.73e-174	523
Msa0919480	AT4G05200.2	39.600	250	139	6	18	261	23	266	1.21e-45	176
Msa0919480	AT4G23160.1	42.243	651	351	9	290	923	40	682	2.08e-164	496
Msa0919480	AT4G23160.1	37.118	229	133	7	39	261	39	262	2.49e-34	141
Msa0919480	AT4G23180.1	42.704	651	341	11	290	923	34	669	1.21e-162	491
Msa0919480	AT4G23180.1	38.095	231	131	9	39	264	33	256	3.53e-34	140
Msa0919480	AT4G23140.1	41.945	658	351	9	290	923	24	674	2.64e-155	473
Msa0919480	AT4G23140.1	38.865	229	129	7	39	261	23	246	1.72e-31	132

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Find 175 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGATGTTTATAGTTT+CGG	0.328948	6_2:-51548355	Msa0919480:CDS
AACAAGTCGATGATGAGGTA+TGG	0.567991	6_2:+51551305	None:intergenic
AACAAGTTTCTCTCCTTGTT+GGG	0.375133	6_2:+51550003	None:intergenic
AACACGGTGGCAGATTCTTG+TGG	0.587244	6_2:+51547934	None:intergenic
AACACTCTAAAGCACATGAA+TGG	0.532263	6_2:-51551257	Msa0919480:exon
AACATACATCTAAGATAGTT+CGG	0.454621	6_2:+51547714	None:intergenic
AACCCTTCAGACACAATCTT+TGG	0.293780	6_2:-51550972	Msa0919480:CDS
AACTGATCAAGGCCCTTGTT+CGG	0.496081	6_2:+51548907	None:intergenic
AAGACAAAGGAAGTACAAAT+AGG	0.386976	6_2:-51548527	Msa0919480:CDS
AATAATCAAACAACCTCAAA+AGG	0.459439	6_2:-51547603	Msa0919480:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAAAACTCAATACATCCA+TGG	-	chr6_2:51547694-51547713	Msa0919480:three_prime_UTR	30.0%
AATGTTATGGAAATTAGCCA+TGG	+	chr6_2:51547714-51547733	None:intergenic	30.0%
TGAAGAGGTTAAGAATGTTA+TGG	+	chr6_2:51547727-51547746	None:intergenic	30.0%
AATAGTGAGGAAGATAAGAA+AGG	+	chr6_2:51547750-51547769	None:intergenic	30.0%
TTCTCACATCTACTAATTCA+TGG	-	chr6_2:51547768-51547787	Msa0919480:three_prime_UTR	30.0%
TCTCACATCTACTAATTCAT+GGG	-	chr6_2:51547769-51547788	Msa0919480:three_prime_UTR	30.0%
TTCTACAACACAACATTCAA+TGG	-	chr6_2:51547914-51547933	Msa0919480:CDS	30.0%
GTATAGCTAATGCAACAAAA+AGG	-	chr6_2:51548011-51548030	Msa0919480:CDS	30.0%
TGCTTGGTATAATGAATGTA+TGG	-	chr6_2:51548069-51548088	Msa0919480:CDS	30.0%
GGTATAATGAATGTATGGTT+TGG	-	chr6_2:51548074-51548093	Msa0919480:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	51547591	51551344	51547591	ID=Msa0919480;Name=Msa0919480
chr6_2	mRNA	51547591	51551344	51547591	ID=Msa0919480-mRNA-1;Parent=Msa0919480;Name=Msa0919480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=80\|1\|1\|1\|1\|1\|7\|225\|923
chr6_2	exon	51547591	51548148	51547591	ID=Msa0919480-mRNA-1:exon:7707;Parent=Msa0919480-mRNA-1
chr6_2	exon	51548273	51548423	51548273	ID=Msa0919480-mRNA-1:exon:7706;Parent=Msa0919480-mRNA-1
chr6_2	exon	51548513	51548750	51548513	ID=Msa0919480-mRNA-1:exon:7705;Parent=Msa0919480-mRNA-1
chr6_2	exon	51548899	51549109	51548899	ID=Msa0919480-mRNA-1:exon:7704;Parent=Msa0919480-mRNA-1
chr6_2	exon	51549179	51549300	51549179	ID=Msa0919480-mRNA-1:exon:7703;Parent=Msa0919480-mRNA-1
chr6_2	exon	51549397	51549534	51549397	ID=Msa0919480-mRNA-1:exon:7702;Parent=Msa0919480-mRNA-1
chr6_2	exon	51549686	51551344	51549686	ID=Msa0919480-mRNA-1:exon:7701;Parent=Msa0919480-mRNA-1
chr6_2	five_prime_UTR	51551265	51551344	51551265	ID=Msa0919480-mRNA-1:five_prime_utr;Parent=Msa0919480-mRNA-1
chr6_2	CDS	51549686	51551264	51549686	ID=Msa0919480-mRNA-1:cds;Parent=Msa0919480-mRNA-1
chr6_2	CDS	51549397	51549534	51549397	ID=Msa0919480-mRNA-1:cds;Parent=Msa0919480-mRNA-1
chr6_2	CDS	51549179	51549300	51549179	ID=Msa0919480-mRNA-1:cds;Parent=Msa0919480-mRNA-1
chr6_2	CDS	51548899	51549109	51548899	ID=Msa0919480-mRNA-1:cds;Parent=Msa0919480-mRNA-1
chr6_2	CDS	51548513	51548750	51548513	ID=Msa0919480-mRNA-1:cds;Parent=Msa0919480-mRNA-1
chr6_2	CDS	51548273	51548423	51548273	ID=Msa0919480-mRNA-1:cds;Parent=Msa0919480-mRNA-1
chr6_2	CDS	51547816	51548148	51547816	ID=Msa0919480-mRNA-1:cds;Parent=Msa0919480-mRNA-1
chr6_2	three_prime_UTR	51547591	51547815	51547591	ID=Msa0919480-mRNA-1:three_prime_utr;Parent=Msa0919480-mRNA-1

Gene Sequence

>Msa0919480

ATGAATGGTAGTAATGAGTACTCTCAAAAACTCAATACATCCATGGCTAATTTCCATAACATTCTTAACCTCTTCACCTTTCTTATCTTCCTCACTATTCTCACATCTACTAATTCATGGGATGACCCTTTTTACCTAAACCAATATTGCTCAAGCAACCGAACATCAGTCAATACTTCATTCCAAATTAACCTCACCACCTTTCTCTCTTCCTTATCATCCAAAGCCACACCAAACACACAATTCTACAACACAACATTCAATGGAAACAACCCTTCAGACACAATCTTTGGGATGTTCTTATGTAGGGGTGATGTTCCCTCTCAACTTTGTCAACAATGTATAGCTAATGCAACAAAAAGGCTATCCTCACAATGCTCTTTGTCTAAAGAAGGTATTGCTTGGTATAATGAATGTATGGTTTGGTATTCCACAACCTTTAATTTCTCCACTATAGCAAGGACAACACCTACTTTTAACTTGTTGAACACTGACAAAGTCGCAAACCCGAAAAGTTTCATGAGTTTATTGTTTTCTACAATGAACAAAACTGCAAATGAAGCAGCTTTTGGTGACAAAAATTTTGCAACGAATGCAATAACTATATCAAAATTTCAGACCCTTTATTGTTTAGTTCAATGCACACCAAATTTGTCACCACATGAATGTAGAAGTTGTCTAAGTGGATTGATAGAACAACTTCCATTGTGTTGTGAAGGAAAAGTTGGAGGAAGAGTTCTAAATCCAAGTTGTAATATTAGGTATGAATTCTACCCTTTTCACATCTCTTCTAATGGTTCATCAAATCCTTCGTCAGAACAAATTATACTTCCCCAAACAAAAAATCTGGATGCTGATTCAATGATTTCAGAACACCCTTTTTACCTTTCACATAATTGTTCAAGTAACAAAACCTTCACTTTTAACAACACTTTCAAGAAACACCTTACAACCCTTTTTTCTTACTTGTCTTCTAATGCCACTAAAAGTCTATTTCATAAAGCTGAAGTTGCAAATACAACTTTTGGACTCTTCATGTGCCGTGGCGATGTTCCCTTTTCCTTATGTGAGCAGTGTGTGAAAAATGCAACACAAATAATAACCAAAGAGTGTGACATATTTCAAGAGGGTATAATTTGGTTTACACAATGCATGATTCGGTTTTCTAATTGGAATTTCTTCTCTATAGTGGACAAAAGTCATATATATTATGAGATGAATGTTACTAGTGATTCTAGTCCCAACAAGGAGAGAAACTTGTTCAATTTTGACATATCAACTACCTTATCAGATGTGGCAATTGTGGCAGGAGATAGTGATGAGAGATTTGGAACAAAATCATTGAAAGTGAATGATTTGCAAACACTTTACACACTTGGTCAATGTACACAGGATTTGTCTAGTGATGATTGCAAGGGTTGTTTGGGAGATGTTATTGGAAATGCTATTCCTTGGCCTTATTTGGGAAGTGTAGGTGGAATAGTTTTATATCCTAGTTGTAATTTGAGGTTTGAATTGTTCCAATTTTATAGGGACAATGAGACAGTTCCGAAACCAATAATTACACATTCTCCATCAGAAAAAAGAAGAAAATTGCCGCAAACAATTACCGTGATTGTTGTGCTAACAATTGTTCCGGTGACACTCTTGTTTGTTGGATGCTATTTGCTAAAGAGAAGAGCAAAAAAGAGTTTTAGAGCTATTCTCAGAGAAAACTTTGGTCATGAAAGTGCAATTTTAGAGCCATTGCAATATGAATTAGCTGCAATTGAAGAAGCAACCAACAACTTTTCAAATGAAAATCTCATTGGCAAAGGTGGATTTGGAGAAGTTCACAAGGGCACTCTTTTGGATGGACGACAAATAGCTGTAAAAAGACTCTCAAGAACCTCAACACAAGGTGCAAAAGAGTTCAAGAATGAGGTTTTGTTGATCGCCAAGCTTCAACATCGAAATCTAGTCACATTCATTGGTTTTTGCCTCGCAGAACAAGAGAAAATACTTATTTATGAATATGTGCCGAACAAGGGCCTTGATCAGTTTTTATTTGATTTTCATCGAGCAAAGTTCTTAAGTTGGTCTGAACGTTACAATATTATAAGGGGAATTGCTCAAGGAATTCTCTATTTGCATGAACATTCTCGGCTCAAAGTTATTCATCGGGACCTCAAACCTAGTAATATTTTATTAGATGAAAACATGATTCCAAAAATATCAGATTTTGGTCTTGCTAGAATTGTAGAACTAAACCAAGACAAAGGAAGTACAAATAGGATCGTGGGAACATTAGGTTATATGTCTCCAGAATATGCAATGCTCGGGCAATTTTCTGAGAAATCTGATGTTTATAGTTTCGGAGTCATGGTTTTAGAAATTATTACCGGAAAGAAGAATATTAGGTCTTATGAATCACATGTTGGTGATGGCCTCTTGAGTTATGTTTGGAAACAATGGAGGGATGAAATACCACTAAGCATATTAGACCCAAATATTAATGGAAGATATTCTGAAATTGAAGTGATTAAATGCATTCAGATTGGTTTATTATGTGTTCAGCAGTTCCCTGATGCAAGACCAACCATTGTTTCAATTGTTTCATATCTTACCAATGACTTCATTGAATTGCCAACTCCACAAGAATCTGCCACCGTGTTCCATCATCAAATGGATGCAAAAGAGATTCCACAAGTTTCAAGTTCAAGTCGGTTGATAAATACTTCCACACCTTTGACGATCAACGACTTATCTATAACCGAAGTTCTTCCTCGTTAG

Protein sequence

>Msa0919480

MNGSNEYSQKLNTSMANFHNILNLFTFLIFLTILTSTNSWDDPFYLNQYCSSNRTSVNTSFQINLTTFLSSLSSKATPNTQFYNTTFNGNNPSDTIFGMFLCRGDVPSQLCQQCIANATKRLSSQCSLSKEGIAWYNECMVWYSTTFNFSTIARTTPTFNLLNTDKVANPKSFMSLLFSTMNKTANEAAFGDKNFATNAITISKFQTLYCLVQCTPNLSPHECRSCLSGLIEQLPLCCEGKVGGRVLNPSCNIRYEFYPFHISSNGSSNPSSEQIILPQTKNLDADSMISEHPFYLSHNCSSNKTFTFNNTFKKHLTTLFSYLSSNATKSLFHKAEVANTTFGLFMCRGDVPFSLCEQCVKNATQIITKECDIFQEGIIWFTQCMIRFSNWNFFSIVDKSHIYYEMNVTSDSSPNKERNLFNFDISTTLSDVAIVAGDSDERFGTKSLKVNDLQTLYTLGQCTQDLSSDDCKGCLGDVIGNAIPWPYLGSVGGIVLYPSCNLRFELFQFYRDNETVPKPIITHSPSEKRRKLPQTITVIVVLTIVPVTLLFVGCYLLKRRAKKSFRAILRENFGHESAILEPLQYELAAIEEATNNFSNENLIGKGGFGEVHKGTLLDGRQIAVKRLSRTSTQGAKEFKNEVLLIAKLQHRNLVTFIGFCLAEQEKILIYEYVPNKGLDQFLFDFHRAKFLSWSERYNIIRGIAQGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVELNQDKGSTNRIVGTLGYMSPEYAMLGQFSEKSDVYSFGVMVLEIITGKKNIRSYESHVGDGLLSYVWKQWRDEIPLSILDPNINGRYSEIEVIKCIQIGLLCVQQFPDARPTIVSIVSYLTNDFIELPTPQESATVFHHQMDAKEIPQVSSSSRLINTSTPLTINDLSITEVLPR*