Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920560 | XP_003619597.2 | 93.077 | 130 | 9 | 0 | 1 | 130 | 1 | 130 | 3.89e-73 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0693380 | Msa0920560 | 0.801628 | 8.231717e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920560 | MtrunA17_Chr6g0476721 | 93.077 | 130 | 9 | 0 | 1 | 130 | 1 | 130 | 3.57e-77 | 224 |
| Msa0920560 | MtrunA17_Chr5g0394191 | 81.818 | 99 | 18 | 0 | 32 | 130 | 1 | 99 | 5.07e-54 | 164 |
| Msa0920560 | MtrunA17_Chr6g0476661 | 55.556 | 90 | 40 | 0 | 36 | 125 | 6 | 95 | 6.05e-31 | 106 |
| Msa0920560 | MtrunA17_Chr1g0188281 | 54.444 | 90 | 41 | 0 | 36 | 125 | 40 | 129 | 1.39e-30 | 106 |
| Msa0920560 | MtrunA17_Chr7g0262501 | 47.674 | 86 | 45 | 0 | 40 | 125 | 7 | 92 | 7.62e-25 | 91.3 |
| Msa0920560 | MtrunA17_Chr1g0183081 | 45.349 | 86 | 47 | 0 | 40 | 125 | 11 | 96 | 3.29e-22 | 84.3 |
| Msa0920560 | MtrunA17_Chr1g0193951 | 32.258 | 93 | 63 | 0 | 36 | 128 | 45 | 137 | 2.18e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920560 | AT4G10280.1 | 46.774 | 124 | 56 | 3 | 16 | 129 | 17 | 140 | 9.37e-32 | 110 |
| Msa0920560 | AT4G10300.1 | 51.579 | 95 | 46 | 0 | 34 | 128 | 40 | 134 | 2.15e-29 | 103 |
| Msa0920560 | AT4G10290.1 | 47.959 | 98 | 48 | 1 | 36 | 130 | 16 | 113 | 2.25e-24 | 90.9 |
| Msa0920560 | AT3G04300.1 | 47.674 | 86 | 45 | 0 | 42 | 127 | 5 | 90 | 4.23e-22 | 84.3 |
| Msa0920560 | AT4G28703.1 | 43.011 | 93 | 44 | 1 | 42 | 125 | 10 | 102 | 4.43e-20 | 79.3 |
| Msa0920560 | AT2G32650.2 | 35.484 | 93 | 60 | 0 | 36 | 128 | 42 | 134 | 5.55e-15 | 67.0 |
| Msa0920560 | AT2G32650.1 | 35.484 | 93 | 60 | 0 | 36 | 128 | 42 | 134 | 5.55e-15 | 67.0 |
| Msa0920560 | AT2G32180.1 | 35.484 | 93 | 60 | 0 | 36 | 128 | 42 | 134 | 5.67e-15 | 67.0 |
| Msa0920560 | AT2G32180.2 | 35.484 | 93 | 60 | 0 | 36 | 128 | 42 | 134 | 5.67e-15 | 67.0 |
Find 35 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGCAAAATTACTTATT+TGG | 0.146096 | 6_2:+55761211 | None:intergenic |
| ATGACATCCTATGAAGTATT+TGG | 0.192997 | 6_2:-55763650 | Msa0920560:CDS |
| CTTTCACTTCCATTACATTA+TGG | 0.244818 | 6_2:-55761122 | Msa0920560:three_prime_UTR |
| AGTATTGCATTTGAATTATC+TGG | 0.297896 | 6_2:-55761087 | Msa0920560:three_prime_UTR |
| ATTTGGCCACAAGAGTAATA+AGG | 0.318432 | 6_2:+55761228 | None:intergenic |
| AACACCAAGCTCAACGAGTT+TGG | 0.318473 | 6_2:+55763598 | None:intergenic |
| ATGTAATGTTCATTCCTTTA+GGG | 0.320882 | 6_2:+55761303 | None:intergenic |
| CATGTAATGTTCATTCCTTT+AGG | 0.324667 | 6_2:+55761302 | None:intergenic |
| GTTACTGTTGAAAAGTCAAT+TGG | 0.338921 | 6_2:-55761362 | Msa0920560:CDS |
| TAATGGAAGTGAAAGCTTAA+AGG | 0.351689 | 6_2:+55761130 | None:intergenic |
| CTTGACTCCAAATACTTCAT+AGG | 0.387775 | 6_2:+55763643 | None:intergenic |
| AGTGATAAACGTTGCACAAT+GGG | 0.430031 | 6_2:+55763737 | None:intergenic |
| GATGTCATGGAAGATTCCTT+TGG | 0.456311 | 6_2:+55763665 | None:intergenic |
| TTGAGCTTGGTGTTTCAACT+TGG | 0.460625 | 6_2:-55763589 | Msa0920560:CDS |
| ATGGCTTATATAATTAATGT+AGG | 0.462178 | 6_2:-55761159 | Msa0920560:three_prime_UTR |
| GAAGTGATTATCACACACTA+TGG | 0.471493 | 6_2:-55761178 | Msa0920560:three_prime_UTR |
| CTAAAGGAATGAACATTACA+TGG | 0.471661 | 6_2:-55761301 | Msa0920560:CDS |
| GAAACAATGTATATACTTGA+AGG | 0.472797 | 6_2:-55761395 | Msa0920560:CDS |
| AAACTATAGTGCTTCTTCAC+AGG | 0.477631 | 6_2:+55761266 | None:intergenic |
| GTTTCTGTTTCTCATGCCAA+AGG | 0.515967 | 6_2:-55763681 | Msa0920560:CDS |
| CAATCCAAACTCGTTGAGCT+TGG | 0.530445 | 6_2:-55763602 | Msa0920560:CDS |
| ATGAAGCCTTATTACTCTTG+TGG | 0.543000 | 6_2:-55761234 | Msa0920560:exon |
| TTACTGTTGAAAAGTCAATT+GGG | 0.550629 | 6_2:-55761361 | Msa0920560:CDS |
| CATGAGAAACAGAAACAAGA+TGG | 0.552975 | 6_2:+55763688 | None:intergenic |
| ATTGCATTTGAATTATCTGG+TGG | 0.554139 | 6_2:-55761084 | Msa0920560:three_prime_UTR |
| ATAATATATCCATAATGTAA+TGG | 0.556241 | 6_2:+55761113 | None:intergenic |
| AAATACTTCATAGGATGTCA+TGG | 0.560683 | 6_2:+55763652 | None:intergenic |
| AACAAGATGGAGAGAATGAG+AGG | 0.564011 | 6_2:+55763701 | None:intergenic |
| TGGCTTATATAATTAATGTA+GGG | 0.564987 | 6_2:-55761158 | Msa0920560:three_prime_UTR |
| TCTTCTTCTTCAAATGACCA+TGG | 0.569053 | 6_2:+55761416 | None:intergenic |
| TCAACGAGTTTGGATTGTGA+TGG | 0.575023 | 6_2:+55763608 | None:intergenic |
| TGAACATTGAACAGGTGGGA+AGG | 0.594790 | 6_2:-55761455 | Msa0920560:intron |
| TAAAGGAATGAACATTACAT+GGG | 0.639073 | 6_2:-55761300 | Msa0920560:CDS |
| ACATTGAACAGGTGGGAAGG+TGG | 0.650249 | 6_2:-55761452 | Msa0920560:intron |
| GAGTGATAAACGTTGCACAA+TGG | 0.667436 | 6_2:+55763736 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGTAAAAAATTAAAAC+CGG | + | chr6_2:55761918-55761937 | None:intergenic | 10.0% |
| !! | GAAAAACATAAACAATAATT+TGG | - | chr6_2:55761028-55761047 | Msa0920560:three_prime_UTR | 15.0% |
| !!! | TTTTTTGTATGATCAATTAT+GGG | - | chr6_2:55761338-55761357 | Msa0920560:CDS | 15.0% |
| !! | ACAGAAAAAAAAAAAAAACT+TGG | + | chr6_2:55761697-55761716 | None:intergenic | 15.0% |
| !!! | TTTCTTTGATTTCATTATTT+CGG | + | chr6_2:55762689-55762708 | None:intergenic | 15.0% |
| !! | ATAATATATCCATAATGTAA+TGG | + | chr6_2:55763691-55763710 | None:intergenic | 15.0% |
| !!! | CTTTTTTGTATGATCAATTA+TGG | - | chr6_2:55761337-55761356 | Msa0920560:CDS | 20.0% |
| !!! | TTTTATACTCATATTTGTTG+TGG | - | chr6_2:55761378-55761397 | Msa0920560:CDS | 20.0% |
| !!! | TTTATACTCATATTTGTTGT+GGG | - | chr6_2:55761379-55761398 | Msa0920560:CDS | 20.0% |
| !!! | TCTTTTGCATAACAAATTTT+GGG | - | chr6_2:55761501-55761520 | Msa0920560:intron | 20.0% |
| !!! | TTTTATACTCATATTTGTTG+TGG | - | chr6_2:55761378-55761397 | Msa0920560:CDS | 20.0% |
| !!! | TTTATACTCATATTTGTTGT+GGG | - | chr6_2:55761379-55761398 | Msa0920560:CDS | 20.0% |
| !! | ATCATAAAATTTCAAATAGC+AGG | + | chr6_2:55762252-55762271 | None:intergenic | 20.0% |
| !! | GATAAAAAAAAGGAGAAAAA+GGG | + | chr6_2:55762351-55762370 | None:intergenic | 20.0% |
| !! | TGATAAAAAAAAGGAGAAAA+AGG | + | chr6_2:55762352-55762371 | None:intergenic | 20.0% |
| !!! | ACTTTTTTATCATCATCTAA+TGG | - | chr6_2:55762485-55762504 | Msa0920560:intron | 20.0% |
| !! | ACATAGCAAAATTACTTATT+TGG | + | chr6_2:55763593-55763612 | None:intergenic | 20.0% |
| !! | ATGGCTTATATAATTAATGT+AGG | - | chr6_2:55763642-55763661 | Msa0920560:CDS | 20.0% |
| !! | TGGCTTATATAATTAATGTA+GGG | - | chr6_2:55763643-55763662 | Msa0920560:CDS | 20.0% |
| !!! | ACATATTTAATCCCTTTTTT+TGG | + | chr6_2:55763770-55763789 | None:intergenic | 20.0% |
| !!! | CTTTAAAACAAACACATCAA+TGG | + | chr6_2:55761310-55761329 | None:intergenic | 25.0% |
| !!! | TTATACTCATATTTGTTGTG+GGG | - | chr6_2:55761380-55761399 | Msa0920560:CDS | 25.0% |
| !! | CTCTTTTGCATAACAAATTT+TGG | - | chr6_2:55761500-55761519 | Msa0920560:intron | 25.0% |
| !!! | TTATACTCATATTTGTTGTG+GGG | - | chr6_2:55761380-55761399 | Msa0920560:CDS | 25.0% |
| !!! | AATAGCATGTTTTTGTTTTC+TGG | - | chr6_2:55761570-55761589 | Msa0920560:intron | 25.0% |
| !!! | ATAGCATGTTTTTGTTTTCT+GGG | - | chr6_2:55761571-55761590 | Msa0920560:intron | 25.0% |
| !!! | GGTTTGTTTTGTAATTTAGA+TGG | - | chr6_2:55761668-55761687 | Msa0920560:intron | 25.0% |
| !! | TTTTCTGTTTAACCTTTCTA+AGG | - | chr6_2:55761709-55761728 | Msa0920560:intron | 25.0% |
| ! | ATTCATCATCTAATTGAATC+AGG | - | chr6_2:55761960-55761979 | Msa0920560:intron | 25.0% |
| ! | TTCATCATCTAATTGAATCA+GGG | - | chr6_2:55761961-55761980 | Msa0920560:intron | 25.0% |
| ! | ATTGGAGATTCAAATTGATA+TGG | - | chr6_2:55762737-55762756 | Msa0920560:intron | 25.0% |
| ! | TTTGATAAGAAGAAACACAA+GGG | + | chr6_2:55762868-55762887 | None:intergenic | 25.0% |
| ! | ATTTGATAAGAAGAAACACA+AGG | + | chr6_2:55762869-55762888 | None:intergenic | 25.0% |
| !! | GAGAATAAATGATTGAGTTT+TGG | + | chr6_2:55762935-55762954 | None:intergenic | 25.0% |
| ! | TCATTTATTCTCTTCTGTTA+TGG | - | chr6_2:55762943-55762962 | Msa0920560:intron | 25.0% |
| ! | CATTTATTCTCTTCTGTTAT+GGG | - | chr6_2:55762944-55762963 | Msa0920560:intron | 25.0% |
| !! | AATGACCATGGAATTTTTAA+TGG | + | chr6_2:55763376-55763395 | None:intergenic | 25.0% |
| ! | GAAACAATGTATATACTTGA+AGG | - | chr6_2:55763406-55763425 | Msa0920560:intron | 25.0% |
| ! | TTACTGTTGAAAAGTCAATT+GGG | - | chr6_2:55763440-55763459 | Msa0920560:intron | 25.0% |
| !!! | AATTTAGTTGTTTTCCCTAA+AGG | - | chr6_2:55763484-55763503 | Msa0920560:intron | 25.0% |
| ! | ATGTAATGTTCATTCCTTTA+GGG | + | chr6_2:55763501-55763520 | None:intergenic | 25.0% |
| ! | TAAAGGAATGAACATTACAT+GGG | - | chr6_2:55763501-55763520 | Msa0920560:intron | 25.0% |
| ! | AGTATTGCATTTGAATTATC+TGG | - | chr6_2:55763714-55763733 | Msa0920560:CDS | 25.0% |
| AAATACTTCATAGGATGTCA+TGG | + | chr6_2:55761152-55761171 | None:intergenic | 30.0% | |
| ! | ATGACATCCTATGAAGTATT+TGG | - | chr6_2:55761151-55761170 | Msa0920560:three_prime_UTR | 30.0% |
| GAAGAGAAAGAAAGTTACTT+AGG | + | chr6_2:55761238-55761257 | None:intergenic | 30.0% | |
| !! | TATACTCATATTTGTTGTGG+GGG | - | chr6_2:55761381-55761400 | Msa0920560:CDS | 30.0% |
| !! | TATACTCATATTTGTTGTGG+GGG | - | chr6_2:55761381-55761400 | Msa0920560:CDS | 30.0% |
| !!! | TAGCATGTTTTTGTTTTCTG+GGG | - | chr6_2:55761572-55761591 | Msa0920560:intron | 30.0% |
| ! | GCTATTAAACCCTACATTTT+AGG | - | chr6_2:55761635-55761654 | Msa0920560:intron | 30.0% |
| AACACAAAGAATCCTTAGAA+AGG | + | chr6_2:55761724-55761743 | None:intergenic | 30.0% | |
| TACTTCAAAGCTGATTACTA+AGG | + | chr6_2:55761752-55761771 | None:intergenic | 30.0% | |
| !! | GCAAAATTAGATCGTTTTTC+CGG | + | chr6_2:55761780-55761799 | None:intergenic | 30.0% |
| GACAATGCATAATATATGCA+AGG | - | chr6_2:55762019-55762038 | Msa0920560:intron | 30.0% | |
| TAAAAACTGTCTAGAAACGT+TGG | + | chr6_2:55762154-55762173 | None:intergenic | 30.0% | |
| TTTATCATCATCTAATGGCT+AGG | - | chr6_2:55762490-55762509 | Msa0920560:intron | 30.0% | |
| GCAGTATACTACTGAATTAA+AGG | - | chr6_2:55762578-55762597 | Msa0920560:intron | 30.0% | |
| !! | ATTAAGGGTACTACTATACA+GGG | + | chr6_2:55762650-55762669 | None:intergenic | 30.0% |
| !! | TATTAAGGGTACTACTATAC+AGG | + | chr6_2:55762651-55762670 | None:intergenic | 30.0% |
| ! | AATATCTCTCAGGGTATTAA+GGG | + | chr6_2:55762665-55762684 | None:intergenic | 30.0% |
| ! | AAATATCTCTCAGGGTATTA+AGG | + | chr6_2:55762666-55762685 | None:intergenic | 30.0% |
| TATTTCGGAAATATCTCTCA+GGG | + | chr6_2:55762674-55762693 | None:intergenic | 30.0% | |
| TTATTTCGGAAATATCTCTC+AGG | + | chr6_2:55762675-55762694 | None:intergenic | 30.0% | |
| TTATGGGCAAATTGAAGTTA+TGG | - | chr6_2:55762960-55762979 | Msa0920560:intron | 30.0% | |
| TTGATTGATATGCTTGATAG+TGG | - | chr6_2:55763006-55763025 | Msa0920560:intron | 30.0% | |
| GAATCCCTTCATAATACTTT+GGG | + | chr6_2:55763054-55763073 | None:intergenic | 30.0% | |
| TGAATCCCTTCATAATACTT+TGG | + | chr6_2:55763055-55763074 | None:intergenic | 30.0% | |
| AAGTATTATGAAGGGATTCA+CGG | - | chr6_2:55763055-55763074 | Msa0920560:intron | 30.0% | |
| ! | TGCATCTAGTTTAGAGAATT+TGG | - | chr6_2:55763087-55763106 | Msa0920560:intron | 30.0% |
| ! | ATCTAGTTTAGAGAATTTGG+TGG | - | chr6_2:55763090-55763109 | Msa0920560:intron | 30.0% |
| ! | TCTAGTTTAGAGAATTTGGT+GGG | - | chr6_2:55763091-55763110 | Msa0920560:intron | 30.0% |
| CATGCTAAGTAACCATAAAT+AGG | - | chr6_2:55763146-55763165 | Msa0920560:intron | 30.0% | |
| AGTAACCATAAATAGGTTTG+AGG | - | chr6_2:55763153-55763172 | Msa0920560:intron | 30.0% | |
| ! | TTTCATCTCATTTTCACTGT+CGG | - | chr6_2:55763192-55763211 | Msa0920560:intron | 30.0% |
| GTTACTGTTGAAAAGTCAAT+TGG | - | chr6_2:55763439-55763458 | Msa0920560:intron | 30.0% | |
| !!! | TCAATTGGGTCTTTTGAAAT+TGG | - | chr6_2:55763454-55763473 | Msa0920560:intron | 30.0% |
| CATGTAATGTTCATTCCTTT+AGG | + | chr6_2:55763502-55763521 | None:intergenic | 30.0% | |
| CTAAAGGAATGAACATTACA+TGG | - | chr6_2:55763500-55763519 | Msa0920560:intron | 30.0% | |
| TAATGGAAGTGAAAGCTTAA+AGG | + | chr6_2:55763674-55763693 | None:intergenic | 30.0% | |
| CTTTCACTTCCATTACATTA+TGG | - | chr6_2:55763679-55763698 | Msa0920560:CDS | 30.0% | |
| ATTGCATTTGAATTATCTGG+TGG | - | chr6_2:55763717-55763736 | Msa0920560:CDS | 30.0% | |
| ! | TGTCATTTGATGCCAAAAAA+AGG | - | chr6_2:55763755-55763774 | Msa0920560:exon | 30.0% |
| GTCATTTGATGCCAAAAAAA+GGG | - | chr6_2:55763756-55763775 | Msa0920560:exon | 30.0% | |
| AGTGATAAACGTTGCACAAT+GGG | + | chr6_2:55761067-55761086 | None:intergenic | 35.0% | |
| CATGAGAAACAGAAACAAGA+TGG | + | chr6_2:55761116-55761135 | None:intergenic | 35.0% | |
| CTTGACTCCAAATACTTCAT+AGG | + | chr6_2:55761161-55761180 | None:intergenic | 35.0% | |
| !!! | AGCATGTTTTTGTTTTCTGG+GGG | - | chr6_2:55761573-55761592 | Msa0920560:intron | 35.0% |
| ACTGTTTAGTTGTGTTGTGT+TGG | - | chr6_2:55761610-55761629 | Msa0920560:intron | 35.0% | |
| !!! | ACCCTACATTTTAGGTTCTT+TGG | - | chr6_2:55761643-55761662 | Msa0920560:intron | 35.0% |
| CCCAAAGAACCTAAAATGTA+GGG | + | chr6_2:55761647-55761666 | None:intergenic | 35.0% | |
| !!! | CCCTACATTTTAGGTTCTTT+GGG | - | chr6_2:55761644-55761663 | Msa0920560:intron | 35.0% |
| TCCCAAAGAACCTAAAATGT+AGG | + | chr6_2:55761648-55761667 | None:intergenic | 35.0% | |
| !!! | TACATTTTAGGTTCTTTGGG+AGG | - | chr6_2:55761647-55761666 | Msa0920560:intron | 35.0% |
| !! | TCAGCTTTGAAGTATGAAAC+CGG | - | chr6_2:55761758-55761777 | Msa0920560:intron | 35.0% |
| !!! | CAGACCAATGTTTTGAAAAC+CGG | - | chr6_2:55761805-55761824 | Msa0920560:intron | 35.0% |
| ! | ACCAACCTGATTGATTCAAA+CGG | - | chr6_2:55761828-55761847 | Msa0920560:intron | 35.0% |
| TTCAACCGTTTGAATCAATC+AGG | + | chr6_2:55761836-55761855 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTCTG+AGG | - | chr6_2:55762026-55762045 | Msa0920560:intron | 35.0% | |
| TTGATTCAACCCTGATTCAT+TGG | + | chr6_2:55762070-55762089 | None:intergenic | 35.0% | |
| AATTCAGTAGTATACTGCCA+TGG | + | chr6_2:55762576-55762595 | None:intergenic | 35.0% | |
| TTAGTACCAAAGTTAGGAGA+AGG | + | chr6_2:55762623-55762642 | None:intergenic | 35.0% | |
| CAATTTGAATCTCCAATCCA+TGG | + | chr6_2:55762734-55762753 | None:intergenic | 35.0% | |
| TTGATATGGTGTGTTCTTTC+AGG | - | chr6_2:55762751-55762770 | Msa0920560:intron | 35.0% | |
| ! | ATACTTTGGGTTCCTTGATA+TGG | + | chr6_2:55763041-55763060 | None:intergenic | 35.0% |
| ! | AGGAACCCAAAGTATTATGA+AGG | - | chr6_2:55763046-55763065 | Msa0920560:intron | 35.0% |
| ! | GGAACCCAAAGTATTATGAA+GGG | - | chr6_2:55763047-55763066 | Msa0920560:intron | 35.0% |
| TCTCTAAACTAGATGCAGTA+GGG | + | chr6_2:55763084-55763103 | None:intergenic | 35.0% | |
| TTCTCTAAACTAGATGCAGT+AGG | + | chr6_2:55763085-55763104 | None:intergenic | 35.0% | |
| ATCAGCCTCAAACCTATTTA+TGG | + | chr6_2:55763161-55763180 | None:intergenic | 35.0% | |
| CAAGAATCTGAACATTGAAC+AGG | - | chr6_2:55763338-55763357 | Msa0920560:intron | 35.0% | |
| AATCTGAACATTGAACAGGT+GGG | - | chr6_2:55763342-55763361 | Msa0920560:intron | 35.0% | |
| GTGGTCCATTAAAAATTCCA+TGG | - | chr6_2:55763368-55763387 | Msa0920560:intron | 35.0% | |
| TCTTCTTCTTCAAATGACCA+TGG | + | chr6_2:55763388-55763407 | None:intergenic | 35.0% | |
| !!! | ATTGGGTCTTTTGAAATTGG+AGG | - | chr6_2:55763457-55763476 | Msa0920560:intron | 35.0% |
| AAACTATAGTGCTTCTTCAC+AGG | + | chr6_2:55763538-55763557 | None:intergenic | 35.0% | |
| !! | ATGAAGCCTTATTACTCTTG+TGG | - | chr6_2:55763567-55763586 | Msa0920560:intron | 35.0% |
| ATTTGGCCACAAGAGTAATA+AGG | + | chr6_2:55763576-55763595 | None:intergenic | 35.0% | |
| GAAGTGATTATCACACACTA+TGG | - | chr6_2:55763623-55763642 | Msa0920560:CDS | 35.0% | |
| GAGTGATAAACGTTGCACAA+TGG | + | chr6_2:55761068-55761087 | None:intergenic | 40.0% | |
| AACAAGATGGAGAGAATGAG+AGG | + | chr6_2:55761103-55761122 | None:intergenic | 40.0% | |
| ! | GTTTCTGTTTCTCATGCCAA+AGG | - | chr6_2:55761120-55761139 | Msa0920560:three_prime_UTR | 40.0% |
| GATGTCATGGAAGATTCCTT+TGG | + | chr6_2:55761139-55761158 | None:intergenic | 40.0% | |
| TCAACGAGTTTGGATTGTGA+TGG | + | chr6_2:55761196-55761215 | None:intergenic | 40.0% | |
| !! | TTGAGCTTGGTGTTTCAACT+TGG | - | chr6_2:55761212-55761231 | Msa0920560:three_prime_UTR | 40.0% |
| ! | TGGTCCGGTTTTCAAAACAT+TGG | + | chr6_2:55761812-55761831 | None:intergenic | 40.0% |
| !! | TTGAATCAATCAGGTTGGTC+CGG | + | chr6_2:55761827-55761846 | None:intergenic | 40.0% |
| ACCGTTTGAATCAATCAGGT+TGG | + | chr6_2:55761832-55761851 | None:intergenic | 40.0% | |
| TTGATTCAAACGGTTGAACC+AGG | - | chr6_2:55761838-55761857 | Msa0920560:intron | 40.0% | |
| !! | TGTGGCAGTTGGTTTGATAT+TGG | - | chr6_2:55761871-55761890 | Msa0920560:intron | 40.0% |
| !! | GTGGCAGTTGGTTTGATATT+GGG | - | chr6_2:55761872-55761891 | Msa0920560:intron | 40.0% |
| ATATTGGGTACATTGCAGTC+TGG | - | chr6_2:55761887-55761906 | Msa0920560:intron | 40.0% | |
| ATTCAACCCTGATTCATTGG+TGG | + | chr6_2:55762067-55762086 | None:intergenic | 40.0% | |
| GAATCAATTGAACCATGACC+CGG | - | chr6_2:55762083-55762102 | Msa0920560:intron | 40.0% | |
| AGACCGAAGATTGAACCATT+GGG | + | chr6_2:55762113-55762132 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTTTATCACCGACC+CGG | - | chr6_2:55762358-55762377 | Msa0920560:intron | 40.0% |
| CTAATGGCTAGGATTCACAA+TGG | - | chr6_2:55762501-55762520 | Msa0920560:intron | 40.0% | |
| GATTTAGATTCTCCGCAATC+AGG | + | chr6_2:55762527-55762546 | None:intergenic | 40.0% | |
| GTTAGGAGAAGGATAGTGAA+AGG | + | chr6_2:55762612-55762631 | None:intergenic | 40.0% | |
| CACTATCCTTCTCCTAACTT+TGG | - | chr6_2:55762614-55762633 | Msa0920560:intron | 40.0% | |
| GGTAGCTTAGTACCAAAGTT+AGG | + | chr6_2:55762629-55762648 | None:intergenic | 40.0% | |
| TGGATGTGCAATCCATATCA+AGG | - | chr6_2:55763026-55763045 | Msa0920560:intron | 40.0% | |
| GAATCTGAACATTGAACAGG+TGG | - | chr6_2:55763341-55763360 | Msa0920560:intron | 40.0% | |
| CAATCCAAACTCGTTGAGCT+TGG | - | chr6_2:55761199-55761218 | Msa0920560:three_prime_UTR | 45.0% | |
| AACACCAAGCTCAACGAGTT+TGG | + | chr6_2:55761206-55761225 | None:intergenic | 45.0% | |
| !! | ACTCATATTTGTTGTGGGGG+TGG | - | chr6_2:55761384-55761403 | Msa0920560:CDS | 45.0% |
| !! | ACTCATATTTGTTGTGGGGG+TGG | - | chr6_2:55761384-55761403 | Msa0920560:CDS | 45.0% |
| !!! | TTTTCTGGGGGTGTTTGTGA+GGG | - | chr6_2:55761585-55761604 | Msa0920560:intron | 45.0% |
| CAAACGGTTGAACCAGGAAT+TGG | - | chr6_2:55761844-55761863 | Msa0920560:intron | 45.0% | |
| ! | ACATTGCAGTCTGGTTCAAC+CGG | - | chr6_2:55761896-55761915 | Msa0920560:intron | 45.0% |
| TTGTCCTTACCAACTGAGCT+AGG | + | chr6_2:55762004-55762023 | None:intergenic | 45.0% | |
| !! | TGATTCATTGGTGGTGTGCA+AGG | + | chr6_2:55762058-55762077 | None:intergenic | 45.0% |
| TTGCACACCACCAATGAATC+AGG | - | chr6_2:55762057-55762076 | Msa0920560:intron | 45.0% | |
| TGCACACCACCAATGAATCA+GGG | - | chr6_2:55762058-55762077 | Msa0920560:intron | 45.0% | |
| GGTCCCAATGGTTCAATCTT+CGG | - | chr6_2:55762107-55762126 | Msa0920560:intron | 45.0% | |
| CAGACCGAAGATTGAACCAT+TGG | + | chr6_2:55762114-55762133 | None:intergenic | 45.0% | |
| CAATGGTTCAATCTTCGGTC+TGG | - | chr6_2:55762112-55762131 | Msa0920560:intron | 45.0% | |
| AGATGCTCAGTGATGCAATG+TGG | - | chr6_2:55762296-55762315 | Msa0920560:intron | 45.0% | |
| CCGGGTCGGTGATAAAAAAA+AGG | + | chr6_2:55762361-55762380 | None:intergenic | 45.0% | |
| ATCTCTTGATTGCGTGACTG+CGG | + | chr6_2:55762389-55762408 | None:intergenic | 45.0% | |
| GATTCACAATGGCCTGATTG+CGG | - | chr6_2:55762512-55762531 | Msa0920560:intron | 45.0% | |
| ! | CCATGGAGAGACACTCTTTT+TGG | + | chr6_2:55762717-55762736 | None:intergenic | 45.0% |
| !! | CCAAAAAGAGTGTCTCTCCA+TGG | - | chr6_2:55762714-55762733 | Msa0920560:intron | 45.0% |
| !! | AAGAGTGTCTCTCCATGGAT+TGG | - | chr6_2:55762719-55762738 | Msa0920560:intron | 45.0% |
| GTGCAAGCGCATATTTCTTC+AGG | + | chr6_2:55763127-55763146 | None:intergenic | 45.0% | |
| TGAACATTGAACAGGTGGGA+AGG | - | chr6_2:55763346-55763365 | Msa0920560:intron | 45.0% | |
| !!! | GGGTCTTTTGAAATTGGAGG+TGG | - | chr6_2:55763460-55763479 | Msa0920560:intron | 45.0% |
| !! | TTTAATGAAATATAAAAAAA+CGG | + | chr6_2:55763300-55763319 | None:intergenic | 5.0% |
| !!! | GTTTTCTGGGGGTGTTTGTG+AGG | - | chr6_2:55761584-55761603 | Msa0920560:intron | 50.0% |
| !! | TTTCTGGGGGTGTTTGTGAG+GGG | - | chr6_2:55761586-55761605 | Msa0920560:intron | 50.0% |
| GAACCAGGAATTGGTCAGTG+TGG | - | chr6_2:55761853-55761872 | Msa0920560:intron | 50.0% | |
| GAATTGGTCAGTGTGGCAGT+TGG | - | chr6_2:55761860-55761879 | Msa0920560:intron | 50.0% | |
| TACCAACTGAGCTAGGCTCA+CGG | + | chr6_2:55761997-55762016 | None:intergenic | 50.0% | |
| ! | TGAGCCTAGCTCAGTTGGTA+AGG | - | chr6_2:55761997-55762016 | Msa0920560:intron | 50.0% |
| TCAATTGAACCATGACCCGG+AGG | - | chr6_2:55762086-55762105 | Msa0920560:intron | 50.0% | |
| ATTGAACCATTGGGACCTCC+GGG | + | chr6_2:55762104-55762123 | None:intergenic | 50.0% | |
| GATTGAACCATTGGGACCTC+CGG | + | chr6_2:55762105-55762124 | None:intergenic | 50.0% | |
| TCTCTTGATTGCGTGACTGC+GGG | + | chr6_2:55762388-55762407 | None:intergenic | 50.0% | |
| ACAGCTCACAAGTGAAGCCA+TGG | - | chr6_2:55762556-55762575 | Msa0920560:intron | 50.0% | |
| ACATTGAACAGGTGGGAAGG+TGG | - | chr6_2:55763349-55763368 | Msa0920560:intron | 50.0% | |
| CTGCCACACTGACCAATTCC+TGG | + | chr6_2:55761859-55761878 | None:intergenic | 55.0% | |
| ACCAACTGAGCTAGGCTCAC+GGG | + | chr6_2:55761996-55762015 | None:intergenic | 55.0% | |
| CTCTTGATTGCGTGACTGCG+GGG | + | chr6_2:55762387-55762406 | None:intergenic | 55.0% | |
| CCAACTGAGCTAGGCTCACG+GGG | + | chr6_2:55761995-55762014 | None:intergenic | 60.0% | |
| TTGCGTGACTGCGGGGAATC+CGG | + | chr6_2:55762380-55762399 | None:intergenic | 60.0% | |
| CCCCGTGAGCCTAGCTCAGT+TGG | - | chr6_2:55761992-55762011 | Msa0920560:intron | 65.0% | |
| CCATTGGGACCTCCGGGTCA+TGG | + | chr6_2:55762098-55762117 | None:intergenic | 65.0% | |
| CCATGACCCGGAGGTCCCAA+TGG | - | chr6_2:55762095-55762114 | Msa0920560:intron | 65.0% | |
| TGACTGCGGGGAATCCGGGT+CGG | + | chr6_2:55762375-55762394 | None:intergenic | 65.0% | |
| TGCGTGACTGCGGGGAATCC+GGG | + | chr6_2:55762379-55762398 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 55761024 | 55763799 | 55761024 | ID=Msa0920560;Name=Msa0920560 |
| chr6_2 | mRNA | 55761024 | 55763799 | 55761024 | ID=Msa0920560-mRNA-1;Parent=Msa0920560;Name=Msa0920560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|1|1|2|229|130 |
| chr6_2 | exon | 55761024 | 55761463 | 55761024 | ID=Msa0920560-mRNA-1:exon:8292;Parent=Msa0920560-mRNA-1 |
| chr6_2 | exon | 55763584 | 55763799 | 55763584 | ID=Msa0920560-mRNA-1:exon:8291;Parent=Msa0920560-mRNA-1 |
| chr6_2 | five_prime_UTR | 55763766 | 55763799 | 55763766 | ID=Msa0920560-mRNA-1:five_prime_utr;Parent=Msa0920560-mRNA-1 |
| chr6_2 | CDS | 55763584 | 55763765 | 55763584 | ID=Msa0920560-mRNA-1:cds;Parent=Msa0920560-mRNA-1 |
| chr6_2 | CDS | 55761253 | 55761463 | 55761253 | ID=Msa0920560-mRNA-1:cds;Parent=Msa0920560-mRNA-1 |
| chr6_2 | three_prime_UTR | 55761024 | 55761252 | 55761024 | ID=Msa0920560-mRNA-1:three_prime_utr;Parent=Msa0920560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
