AlfalfaGEDB | Msa0924380

M. sativa cultivar zhongmu-4 / Msa0924380

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924380	XP_013452950.1	90.888	428	37	1	1	426	1	428	0.0	801

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924380	sp\|P0C5E2\|LRL12_ARATH	55.446	303	116	3	97	392	328	618	4.06e-105	328

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0897740	Msa0924380	0.973007	1.050577e-135	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924380	MtrunA17_Chr6g0483731	92.105	380	28	1	49	426	1	380	0.0	719
Msa0924380	MtrunA17_Chr7g0251121	56.579	304	113	3	96	392	353	644	2.23e-112	345
Msa0924380	MtrunA17_Chr5g0423061	53.185	314	127	3	97	402	299	600	7.13e-110	337
Msa0924380	MtrunA17_Chr8g0376061	53.074	309	126	3	97	398	323	619	5.26e-109	335
Msa0924380	MtrunA17_Chr6g0483931	54.194	310	123	4	96	398	355	652	3.29e-108	334
Msa0924380	MtrunA17_Chr6g0467601	53.185	314	129	4	98	404	141	443	1.74e-107	325
Msa0924380	MtrunA17_Chr1g0209361	53.618	304	122	3	97	393	330	621	4.98e-106	328
Msa0924380	MtrunA17_Chr6g0467631	51.899	316	133	3	96	404	336	639	1.41e-105	327
Msa0924380	MtrunA17_Chr1g0209391	52.025	321	128	4	97	403	287	595	5.60e-105	324
Msa0924380	MtrunA17_Chr1g0209431	50.820	305	131	3	97	394	325	617	4.08e-100	312

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924380	AT1G18390.1	55.446	303	116	3	97	392	325	615	1.60e-106	328
Msa0924380	AT1G18390.2	55.446	303	116	3	97	392	331	621	4.09e-106	328
Msa0924380	AT1G25390.1	51.645	304	127	3	97	392	278	569	1.22e-102	318
Msa0924380	AT1G25390.2	51.645	304	127	3	97	392	278	569	1.22e-102	318
Msa0924380	AT1G66880.3	48.589	319	143	4	88	399	326	630	1.39e-96	303
Msa0924380	AT5G38210.3	50.825	303	128	4	96	391	340	628	1.41e-94	298
Msa0924380	AT1G66880.2	48.589	319	143	4	88	399	568	872	3.05e-94	303
Msa0924380	AT5G38210.2	50.825	303	128	4	96	391	358	646	3.64e-94	298
Msa0924380	AT5G38210.1	50.825	303	128	4	96	391	346	634	7.19e-94	297
Msa0924380	AT1G66880.1	48.589	319	143	4	88	399	947	1251	6.23e-92	302

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 114 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGATGTTTACAGCTT+CGG	0.444019	6_2:+66271853	Msa0924380:CDS
AAACAACCCTTCATTAACAA+AGG	0.524977	6_2:+66270286	Msa0924380:CDS
AAAGATTCTTCATAATTGTG+TGG	0.592796	6_2:-66269696	None:intergenic
AACAACCCTTCATTAACAAA+GGG	0.492284	6_2:+66270287	Msa0924380:CDS
AACTCTCGGTTATATTGATC+CGG	0.457478	6_2:+66271801	Msa0924380:CDS
AAGACAAGTTCAAGATGTTA+AGG	0.393322	6_2:+66271389	Msa0924380:CDS
AAGATATAATATTCCAACTC+TGG	0.505963	6_2:-66272248	None:intergenic
AAGCTTGTCGACCCGACTCT+TGG	0.357967	6_2:+66271985	Msa0924380:CDS
AAGGCGTGACAATCCAAAGT+CGG	0.645801	6_2:-66271737	None:intergenic
AAGTGAAACGGTAGGTGCAG+TGG	0.606023	6_2:+66272029	Msa0924380:CDS

Showing 1 to 10 of 114 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GACAAGTAGAAGAAAATTAG+AGG	-	chr6_2:66269380-66269399	None:intergenic	30.0%
TTATCACCTGATGGAAATTA+AGG	-	chr6_2:66269466-66269485	None:intergenic	30.0%
ATTGGTTATAGTTACTAGCA+AGG	-	chr6_2:66269555-66269574	None:intergenic	30.0%
CACCTTAAAGTGATCTAAAA+AGG	-	chr6_2:66269730-66269749	None:intergenic	30.0%
AAACAACCCTTCATTAACAA+AGG	+	chr6_2:66270286-66270305	Msa0924380:CDS	30.0%
AACAACCCTTCATTAACAAA+GGG	+	chr6_2:66270287-66270306	Msa0924380:CDS	30.0%
TTCGACACTAGTAAAATACT+TGG	+	chr6_2:66270557-66270576	Msa0924380:CDS	30.0%
TCGACACTAGTAAAATACTT+GGG	+	chr6_2:66270558-66270577	Msa0924380:CDS	30.0%
ACTAGTAAAATACTTGGGAA+CGG	+	chr6_2:66270563-66270582	Msa0924380:CDS	30.0%
GCAAAATTCTAGATTCTCAT+TGG	-	chr6_2:66270998-66271017	None:intergenic	30.0%

Showing 1 to 10 of 168 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	66269276	66272396	66269276	ID=Msa0924380;Name=Msa0924380
chr6_2	mRNA	66269276	66272396	66269276	ID=Msa0924380-mRNA-1;Parent=Msa0924380;Name=Msa0924380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=954\|1\|1\|1\|1\|1\|2\|151\|426
chr6_2	exon	66269276	66270608	66269276	ID=Msa0924380-mRNA-1:exon:10479;Parent=Msa0924380-mRNA-1
chr6_2	exon	66271344	66272396	66271344	ID=Msa0924380-mRNA-1:exon:10480;Parent=Msa0924380-mRNA-1
chr6_2	five_prime_UTR	66269276	66270229	66269276	ID=Msa0924380-mRNA-1:five_prime_utr;Parent=Msa0924380-mRNA-1
chr6_2	CDS	66270230	66270608	66270230	ID=Msa0924380-mRNA-1:cds;Parent=Msa0924380-mRNA-1
chr6_2	CDS	66271344	66272245	66271344	ID=Msa0924380-mRNA-1:cds;Parent=Msa0924380-mRNA-1
chr6_2	three_prime_UTR	66272246	66272396	66272246	ID=Msa0924380-mRNA-1:three_prime_utr;Parent=Msa0924380-mRNA-1

Gene Sequence

>Msa0924380

ATGCCAATTTTCTCTTTTTTGTGTCATTGTTTTTCCCCTGATGAAACTGGAAAGAAAAACAACCCTTCATTAACAAAGGGTTTTAAGGAAAAGGGTAGCGATTTTGTGGCTGCGAGTTCTGCGAAGGCAATCAACAATGATCAAATGGTGTCTGTAGATTCTAAGGTTACAAGCGATAGTAAGGAGTCAGTTCCGGTGATTTCTGAGATACCAAGTAGTCATGGTGCTGAAGCATTGATGATTGACTCTAAGGTCCAGAACAACCAATGCAACATTAGTGAGAGTGAGATATTCAAGTATTCTGAACTTGAAGAAGCTACCAGTAACTTCGACACTAGTAAAATACTTGGGAACGGAGGCTATGGAACGGTTTACTCTGGAACACTTAAAGATGGGCGTCTTGTTGCAATAAAGCGCTTACACAAAGACAAGTTCAAGATGTTAAGGTTACATGATAATAAGCTTGAGGAGGAAACATTAAGAAAGTTCATCAATGAAGTTTCAATGTTAACTCGCATGAGGCACGAAAATCTTGTCCAACTGTATGGTTGCACCTCTCCTCAAACACGTGAACTACTTCTCGTGCAAGAATACGTTCCGAATGGAACTGTGTCTTCTCGTCTTCATAAACACAAGTTCCCGTGGTCTACTCGACTAAGCGTCGCATTACAAACTGCAAGTGCACTGGCTTATCTTCATGCTTCCAATGTTATCCACCGTGATGTGAATACTAGTAATATTCTACTTGACAAAAGTTTGAATGCAAAAGTTGCCGACTTTGGATTGTCACGCCTTGTCCCGCACGATGCCACTCATGTTACAACCGATCCTGCTGGAACTCTCGGTTATATTGATCCGGAGTATTACGAGCATTGTCATCTTTCGGATAAAAGCGATGTTTACAGCTTCGGAGTGATATTGGTTGAGTTGATATCATCTTTGCCTGCATTTAGCAAGGATGAAAAACAACCTTTTCTTTCTGATTTCGCTATGGATAAAATTCTTAAGGGACAACTCGAAAAGCTTGTCGACCCGACTCTTGGATTTCAATCAGACAATTGGATAAGTGAAACGGTAGGTGCAGTGGCAGAGTTAGCATTTGGCTGCTTACAACCTCAAAGAGACATGAGACCTTCCATGAGTGAGGTTTTGAATACTCTTGAGAGCATAAAAAGTGGAAGCTCTCAAAAAGCTCTTAAACGGGGTTCAAATAATTGTCATAATGCTACCAAAGTTCACATTGTGTCACGTTTGCCAGATGATTATTTTGAGAAGAAATAG

Protein sequence

>Msa0924380

MPIFSFLCHCFSPDETGKKNNPSLTKGFKEKGSDFVAASSAKAINNDQMVSVDSKVTSDSKESVPVISEIPSSHGAEALMIDSKVQNNQCNISESEIFKYSELEEATSNFDTSKILGNGGYGTVYSGTLKDGRLVAIKRLHKDKFKMLRLHDNKLEEETLRKFINEVSMLTRMRHENLVQLYGCTSPQTRELLLVQEYVPNGTVSSRLHKHKFPWSTRLSVALQTASALAYLHASNVIHRDVNTSNILLDKSLNAKVADFGLSRLVPHDATHVTTDPAGTLGYIDPEYYEHCHLSDKSDVYSFGVILVELISSLPAFSKDEKQPFLSDFAMDKILKGQLEKLVDPTLGFQSDNWISETVGAVAELAFGCLQPQRDMRPSMSEVLNTLESIKSGSSQKALKRGSNNCHNATKVHIVSRLPDDYFEKK*