AlfalfaGEDB | Msa0926730

M. sativa cultivar zhongmu-4 / Msa0926730

KEGG: K08817
GO: GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0926730	XP_003620628.1	94.245	417	22	1	1	415	1	417	0.0	810

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0926730	sp\|O80345\|CDKF1_ARATH	59.589	438	154	4	4	420	5	440	0.0	524

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0900050	Msa0926730	0.993854	1.032987e-202	-8.615850e-47
Msa0926730	Msa0965420	0.844936	5.552062e-59	-8.615850e-47
Msa0926730	Msa1388900	0.889927	1.561496e-73	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0926730	MtrunA17_Chr6g0486031	94.245	417	22	1	1	415	1	417	0.0	810
Msa0926730	MtrunA17_Chr8g0390341	63.409	440	136	7	1	420	1	435	0.0	549
Msa0926730	MtrunA17_Chr4g0057791	40.426	141	78	1	270	404	377	517	4.78e-28	115
Msa0926730	MtrunA17_Chr4g0057791	29.936	157	90	4	17	157	215	367	4.16e-13	70.9
Msa0926730	MtrunA17_Chr4g0051261	40.152	132	77	2	269	400	160	289	2.49e-27	110
Msa0926730	MtrunA17_Chr4g0051261	33.775	151	86	6	19	157	3	151	4.66e-15	75.5
Msa0926730	MtrunA17_Chr6g0483151	34.868	152	96	1	266	417	165	313	2.99e-27	112
Msa0926730	MtrunA17_Chr6g0483151	35.484	155	88	3	15	159	9	161	4.20e-20	91.7
Msa0926730	MtrunA17_Chr2g0293491	37.121	132	81	2	269	400	160	289	2.64e-26	107
Msa0926730	MtrunA17_Chr2g0293491	33.117	154	83	6	19	157	3	151	1.86e-13	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0926730	AT4G28980.3	59.589	438	154	4	4	420	5	440	0.0	524
Msa0926730	AT4G28980.1	59.589	438	154	4	4	420	5	440	0.0	524
Msa0926730	AT4G28980.2	59.589	438	154	4	4	420	5	440	0.0	524
Msa0926730	AT3G48750.1	42.424	132	74	2	269	400	160	289	9.64e-31	120
Msa0926730	AT3G48750.1	33.775	151	86	5	19	157	3	151	4.02e-14	73.2
Msa0926730	AT1G18040.1	36.242	149	92	1	269	417	166	311	1.25e-30	122
Msa0926730	AT1G18040.1	32.903	155	92	3	15	159	7	159	2.09e-18	87.0
Msa0926730	AT1G66750.1	37.162	148	90	1	269	416	167	311	1.68e-30	120
Msa0926730	AT1G66750.1	36.111	144	80	3	26	159	19	160	1.07e-19	90.1
Msa0926730	AT1G73690.1	36.184	152	92	2	269	420	165	311	8.93e-29	117

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Find 122 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTTTGATTTCTCTT+TGG	0.221448	6_2:+70720314	None:intergenic
AAACTCTTTGATTTCTCTTT+GGG	0.210860	6_2:+70720315	None:intergenic
AAAGAAATTCTTGCATAATC+AGG	0.371254	6_2:+70716995	None:intergenic
AACTGGATACGAAAATCAAG+AGG	0.653498	6_2:-70717461	Msa0926730:CDS
AAGCATGCTTCAAGACCAAT+AGG	0.381312	6_2:+70716956	None:intergenic
AAGCCTTTGTTTCCTGGTAC+AGG	0.425521	6_2:-70717097	Msa0926730:CDS
AAGGACACCAACACGCATGA+CGG	0.646451	6_2:-70717355	Msa0926730:CDS
AATAACATCATGAGGATGCT+GGG	0.554911	6_2:+70717507	None:intergenic
AATTTCTTGGTTTCGGAAAA+TGG	0.152157	6_2:-70719828	Msa0926730:CDS
ACAAAGATAGTGAATTCAGG+GGG	0.702178	6_2:-70716471	Msa0926730:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTATGATTGTCATAGGAA+TGG	-	chr6_2:70716870-70716889	Msa0926730:CDS	30.0%
AATTTCTTGGTTTCGGAAAA+TGG	-	chr6_2:70716921-70716940	Msa0926730:CDS	30.0%
ATTTCTTGGTTTCGGAAAAT+GGG	-	chr6_2:70716922-70716941	Msa0926730:CDS	30.0%
AGTTAATAAACTTCACTCAC+CGG	+	chr6_2:70717279-70717298	None:intergenic	30.0%
CAAATCATTCGAAAAAACTC+AGG	+	chr6_2:70717575-70717594	None:intergenic	30.0%
GAGAACTTATGAAAACAGTT+AGG	-	chr6_2:70718172-70718191	Msa0926730:intron	30.0%
ACTAAAATTGCAACATTCAG+TGG	+	chr6_2:70718523-70718542	None:intergenic	30.0%
CTATGATTTCTCCAAATTCA+CGG	-	chr6_2:70718616-70718635	Msa0926730:intron	30.0%
ACAAAACAATGATGCAATAG+CGG	+	chr6_2:70718854-70718873	None:intergenic	30.0%
AAAATCATTGTGGGAAATCA+CGG	+	chr6_2:70718995-70719014	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	70716407	70720364	70716407	ID=Msa0926730;Name=Msa0926730
chr6_2	mRNA	70716407	70720364	70716407	ID=Msa0926730-mRNA-1;Parent=Msa0926730;Name=Msa0926730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=100\|1\|1\|1\|1\|1\|2\|377\|420
chr6_2	exon	70716407	70717581	70716407	ID=Msa0926730-mRNA-1:exon:11601;Parent=Msa0926730-mRNA-1
chr6_2	exon	70719800	70720364	70719800	ID=Msa0926730-mRNA-1:exon:11600;Parent=Msa0926730-mRNA-1
chr6_2	five_prime_UTR	70720265	70720364	70720265	ID=Msa0926730-mRNA-1:five_prime_utr;Parent=Msa0926730-mRNA-1
chr6_2	CDS	70719800	70720264	70719800	ID=Msa0926730-mRNA-1:cds;Parent=Msa0926730-mRNA-1
chr6_2	CDS	70716784	70717581	70716784	ID=Msa0926730-mRNA-1:cds;Parent=Msa0926730-mRNA-1
chr6_2	three_prime_UTR	70716407	70716783	70716407	ID=Msa0926730-mRNA-1:three_prime_utr;Parent=Msa0926730-mRNA-1

Gene Sequence

>Msa0926730

ATGGATCCTCCAACAAAGAGTTGGAGCATCCAAACCCGACCGGAAATCACAACCAAATACTCCATCCTCACCCACATCGGCTCCGGCACCTACTCCGACGTCTACAGCGGCCGCCGTCTCTCCGACGGAACACCCGTCGCGTTGAAAGAAATCCACGATCACCAATCAGCATCACGTGAAATCACCGCTTTACGCATTCTTCGGGGCTCCGAAAACGTGGTTTTGATGCATGAATTCTTCTGGAGGGAGGAGGAAGATGCAGTGATCGTGTTGGAGTTTCTGAGGAGTGATCTGGGTGCTGTGATCAGAGATGGGTTTGGTGGTGGTGAAGTGAAAGGGTGGTTGATGCAGATTGTTAATGGGGTTTATGATTGTCATAGGAATGGGATTGTTCATAGAGATTTGAAGCCGGAGAATTTCTTGGTTTCGGAAAATGGGGTTTTGAAAATTGCTGATTTTGGACAGGCAAGGATACTTTTGAAGTCTGGATTTGATGCAACAAATCATGGAAGTTCATCCCAGCATCCTCATGATGTTATTCCCTTATCTGACAATACAAACCAAACTGGATACGAAAATCAAGAGGAGGAGGAAAGAATGACTCATGATGAATATTTTAGAGTGTTAGATGAGCTGAAAATTCAGAGTCACACATATGACACTGATGATAAGGACACCAACACGCATGACGGTAACAACTCGTGCCGCGCAACATGCACAACTAGCGACGACGACGATGATGCTTGGAAGAATTCTTTGCCATATGAAGCAAATGAAGAAAGGGATGAAAAACTAGATGGTTTCCTCACATCATGTGTTGGAACTAGATGGTTTAGGGCTCCTGAACTACTTTATGGGTCAACAAATTATGGTTTAGAGATTGATCTTTGGTCATTAGGATGTGTCTTTGCTGAGTTGTTAACATCAAAGCCTTTGTTTCCTGGTACAGGTGATATTGATCAGATTAGTAGAATCATTAGCGTTTTCGGTAATCTCGATGAGGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTATGCAAGAATTTCTTTTGCTAAGGTGGAAAACCCTATTGGTCTTGAAGCATGCTTGCCAAATTGTTTGCAAGATGAAGTTTCCTTGGTCAAAAGATTGCTTTGTTATGATCCAGCTAGGAGAGCCACTGCGGCGGAGTTACTTCATGACAAGTACTTCTCTGAAGAACCACTTCCTGTTCCCATTACTCATCTAAGAGTTCCTTCAACCAAAAATGGACAAGACTAG

Protein sequence

>Msa0926730

MDPPTKSWSIQTRPEITTKYSILTHIGSGTYSDVYSGRRLSDGTPVALKEIHDHQSASREITALRILRGSENVVLMHEFFWREEEDAVIVLEFLRSDLGAVIRDGFGGGEVKGWLMQIVNGVYDCHRNGIVHRDLKPENFLVSENGVLKIADFGQARILLKSGFDATNHGSSSQHPHDVIPLSDNTNQTGYENQEEEERMTHDEYFRVLDELKIQSHTYDTDDKDTNTHDGNNSCRATCTTSDDDDDAWKNSLPYEANEERDEKLDGFLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCVFAELLTSKPLFPGTGDIDQISRIISVFGNLDEEAWNGCSKLPDYARISFAKVENPIGLEACLPNCLQDEVSLVKRLLCYDPARRATAAELLHDKYFSEEPLPVPITHLRVPSTKNGQD*