AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0926970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0926970 MtrunA17_Chr6g0486181 48.780 287 67 5 1 209 1 285 1.07e-65 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 28 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAGTCGCGGATTCTTTA+AGG 0.149783 6_2:-71037112 Msa0926970:CDS
ATAACAAAGAAAATATATTT+TGG 0.162580 6_2:-71035420 Msa0926970:CDS
GATATTAAGGACAAGAGTTT+AGG 0.308639 6_2:-71037368 Msa0926970:CDS
ATTAAACAAGTTTCTAGAAC+AGG 0.359747 6_2:-71035520 Msa0926970:CDS
TTCTTTCATGGAGGAGGAAG+GGG 0.389696 6_2:-71037078 Msa0926970:intron
AAAGAATCCGCGACTTTCAT+AGG 0.395410 6_2:+71037116 None:intergenic
TACATCGAATAAAGTACTTT+AGG 0.397763 6_2:-71035293 Msa0926970:exon
GTTGAAGAAGGGCGTTGAAC+AGG 0.397808 6_2:+71035556 None:intergenic
TATATCTGCTATCATTGAAA+TGG 0.397917 6_2:+71037235 None:intergenic
AGTAATATGAATATAAAAGT+TGG 0.399294 6_2:-71037422 Msa0926970:CDS
TGAATTAAGTTCATGTAAAG+TGG 0.425996 6_2:+71035262 None:intergenic
AAGTTTCTAGAACAGGGTAT+TGG 0.464513 6_2:-71035513 Msa0926970:CDS
GATAGAGATGGTAGCACTCA+AGG 0.505801 6_2:-71037267 Msa0926970:CDS
CATGAATATAAAATTATCGA+TGG 0.508016 6_2:-71035358 Msa0926970:CDS
ATACGAAGCAATGTTGAAGA+AGG 0.520901 6_2:+71035544 None:intergenic
ACTAGAGTATTTGATAGAGA+TGG 0.527025 6_2:-71037279 Msa0926970:intron
CATGAATATAAAATTATCGA+TGG 0.529492 6_2:-71035319 Msa0926970:CDS
CATGAGCATGATTCTGACAC+TGG 0.533230 6_2:-71035472 Msa0926970:CDS
TTCTAGAACAGGGTATTGGA+AGG 0.541064 6_2:-71035509 Msa0926970:CDS
TTTCTTTCATGGAGGAGGAA+GGG 0.543712 6_2:-71037079 Msa0926970:CDS
GGACAAGAGTTTAGGAAAGA+CGG 0.564396 6_2:-71037360 Msa0926970:CDS
ATGAATATAAAATTATCGAT+GGG 0.565717 6_2:-71035357 Msa0926970:CDS
TCTAGAACAGGGTATTGGAA+GGG 0.578826 6_2:-71035508 Msa0926970:CDS
ATGAATATAAAATTATCGAT+GGG 0.596279 6_2:-71035318 Msa0926970:CDS
TACGAAGCAATGTTGAAGAA+GGG 0.610458 6_2:+71035545 None:intergenic
ATGAGCATGATTCTGACACT+GGG 0.630580 6_2:-71035471 Msa0926970:CDS
TTAAACAAGTTTCTAGAACA+GGG 0.653611 6_2:-71035519 Msa0926970:CDS
AACGTGACCTATGAAAGTCG+CGG 0.766478 6_2:-71037123 Msa0926970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTATACTACTTATA+CGG - chr6_2:71036234-71036253 Msa0926970:intron 10.0%
!!! AAATAATATGTTATTTGATA+CGG + chr6_2:71037109-71037128 None:intergenic 10.0%
!!! ATAACAAAGAAAATATATTT+TGG - chr6_2:71037280-71037299 Msa0926970:intron 10.0%
!!! TAACAAAGAAAATATATTTT+GGG - chr6_2:71037281-71037300 Msa0926970:intron 10.0%
!!! ATAATTTTATATTCATGATA+GGG + chr6_2:71037378-71037397 None:intergenic 10.0%
!! AATTAATTATACTACTTATA+CGG - chr6_2:71036234-71036253 Msa0926970:intron 10.0%
!!! AAATAATATGTTATTTGATA+CGG + chr6_2:71037109-71037128 None:intergenic 10.0%
!!! ATAACAAAGAAAATATATTT+TGG - chr6_2:71037280-71037299 Msa0926970:intron 10.0%
!!! TAACAAAGAAAATATATTTT+GGG - chr6_2:71037281-71037300 Msa0926970:intron 10.0%
!!! ATAATTTTATATTCATGATA+GGG + chr6_2:71037378-71037397 None:intergenic 10.0%
!! AGTAATATGAATATAAAAGT+TGG - chr6_2:71035278-71035297 Msa0926970:exon 15.0%
!! CTTAAAGAAAAAGAAAAAAA+GGG - chr6_2:71035803-71035822 Msa0926970:intron 15.0%
!! TATACTACTTAATACTTATA+CGG - chr6_2:71036291-71036310 Msa0926970:intron 15.0%
!! TATACTACTTAATACTTATA+CGG - chr6_2:71036291-71036310 Msa0926970:intron 15.0%
!!! TATCTAAATTTTGTGTTAAT+TGG - chr6_2:71036465-71036484 Msa0926970:intron 15.0%
!!! TATCTAAATTTTGTGTTAAT+TGG - chr6_2:71036465-71036484 Msa0926970:intron 15.0%
!! AATTGGTTATAATACTTATA+AGG - chr6_2:71036579-71036598 Msa0926970:intron 15.0%
!!! AACAAAGAAAATATATTTTG+GGG - chr6_2:71037282-71037301 Msa0926970:intron 15.0%
!! ATGAATATAAAATTATCGAT+GGG - chr6_2:71037343-71037362 Msa0926970:intron 15.0%
!!! GATAATTTTATATTCATGAT+AGG + chr6_2:71037379-71037398 None:intergenic 15.0%
!! ATGAATATAAAATTATCGAT+GGG - chr6_2:71037343-71037362 Msa0926970:intron 15.0%
!! AGTAATATGAATATAAAAGT+TGG - chr6_2:71035278-71035297 Msa0926970:exon 15.0%
!! CTTAAAGAAAAAGAAAAAAA+GGG - chr6_2:71035803-71035822 Msa0926970:intron 15.0%
!! TATACTACTTAATACTTATA+CGG - chr6_2:71036291-71036310 Msa0926970:intron 15.0%
!! TATACTACTTAATACTTATA+CGG - chr6_2:71036291-71036310 Msa0926970:intron 15.0%
!!! TATCTAAATTTTGTGTTAAT+TGG - chr6_2:71036465-71036484 Msa0926970:intron 15.0%
!!! TATCTAAATTTTGTGTTAAT+TGG - chr6_2:71036465-71036484 Msa0926970:intron 15.0%
!! AATTGGTTATAATACTTATA+AGG - chr6_2:71036579-71036598 Msa0926970:intron 15.0%
!!! AACAAAGAAAATATATTTTG+GGG - chr6_2:71037282-71037301 Msa0926970:intron 15.0%
!! ATGAATATAAAATTATCGAT+GGG - chr6_2:71037343-71037362 Msa0926970:intron 15.0%
!!! GATAATTTTATATTCATGAT+AGG + chr6_2:71037379-71037398 None:intergenic 15.0%
!! ATGAATATAAAATTATCGAT+GGG - chr6_2:71037343-71037362 Msa0926970:intron 15.0%
!! ATTCCAAAAAAGAGATATTA+AGG - chr6_2:71035319-71035338 Msa0926970:CDS 20.0%
!!! GAAACAAATTTTTTCTTTCA+TGG - chr6_2:71035610-71035629 Msa0926970:intron 20.0%
!!! TTTTTCTTTTTCTTTAAGGT+GGG + chr6_2:71035801-71035820 None:intergenic 20.0%
!!! TTTTTTCTTTTTCTTTAAGG+TGG + chr6_2:71035802-71035821 None:intergenic 20.0%
!!! CCTTTTTTTCTTTTTCTTTA+AGG + chr6_2:71035805-71035824 None:intergenic 20.0%
!! CCTTAAAGAAAAAGAAAAAA+AGG - chr6_2:71035802-71035821 Msa0926970:intron 20.0%
!! TAATCAACAATACTAAATTG+TGG + chr6_2:71036115-71036134 None:intergenic 20.0%
!! AAATGCACAATTCTAAATTA+GGG + chr6_2:71036160-71036179 None:intergenic 20.0%
!! AAAATGCACAATTCTAAATT+AGG + chr6_2:71036161-71036180 None:intergenic 20.0%
!!! CTTTAATTTTGTAAATTGTG+TGG - chr6_2:71036359-71036378 Msa0926970:intron 20.0%
!! TAATACTAAGTAGTATAAGT+AGG + chr6_2:71036389-71036408 None:intergenic 20.0%
!!! TTTTGTGTTAATTGGTTAAT+TGG - chr6_2:71036473-71036492 Msa0926970:intron 20.0%
!! AATTGGTTATAATACCTATA+AGG - chr6_2:71036490-71036509 Msa0926970:intron 20.0%
!!! TTTTGTGTTAATTGGTTAAT+TGG - chr6_2:71036473-71036492 Msa0926970:intron 20.0%
!! GTTATAAATGGAAATAAAAG+AGG + chr6_2:71036919-71036938 None:intergenic 20.0%
!! TTATGTCATATATAAATTCG+CGG - chr6_2:71036951-71036970 Msa0926970:intron 20.0%
!! AGTGGAAATAAAATAGATAT+TGG - chr6_2:71037060-71037079 Msa0926970:intron 20.0%
!! TAACATATTATTTGTTTCAG+CGG - chr6_2:71037116-71037135 Msa0926970:CDS 20.0%
!! CATGAATATAAAATTATCGA+TGG - chr6_2:71037342-71037361 Msa0926970:intron 20.0%
!! CATGAATATAAAATTATCGA+TGG - chr6_2:71037342-71037361 Msa0926970:intron 20.0%
!! ATTCCAAAAAAGAGATATTA+AGG - chr6_2:71035319-71035338 Msa0926970:CDS 20.0%
!!! GAAACAAATTTTTTCTTTCA+TGG - chr6_2:71035610-71035629 Msa0926970:intron 20.0%
!!! TTTTTCTTTTTCTTTAAGGT+GGG + chr6_2:71035801-71035820 None:intergenic 20.0%
!!! TTTTTTCTTTTTCTTTAAGG+TGG + chr6_2:71035802-71035821 None:intergenic 20.0%
!!! CCTTTTTTTCTTTTTCTTTA+AGG + chr6_2:71035805-71035824 None:intergenic 20.0%
!! CCTTAAAGAAAAAGAAAAAA+AGG - chr6_2:71035802-71035821 Msa0926970:intron 20.0%
!! TAATCAACAATACTAAATTG+TGG + chr6_2:71036115-71036134 None:intergenic 20.0%
!! AAATGCACAATTCTAAATTA+GGG + chr6_2:71036160-71036179 None:intergenic 20.0%
!! AAAATGCACAATTCTAAATT+AGG + chr6_2:71036161-71036180 None:intergenic 20.0%
!!! CTTTAATTTTGTAAATTGTG+TGG - chr6_2:71036359-71036378 Msa0926970:intron 20.0%
!! TAATACTAAGTAGTATAAGT+AGG + chr6_2:71036389-71036408 None:intergenic 20.0%
!!! TTTTGTGTTAATTGGTTAAT+TGG - chr6_2:71036473-71036492 Msa0926970:intron 20.0%
!! AATTGGTTATAATACCTATA+AGG - chr6_2:71036490-71036509 Msa0926970:intron 20.0%
!!! TTTTGTGTTAATTGGTTAAT+TGG - chr6_2:71036473-71036492 Msa0926970:intron 20.0%
!! GTTATAAATGGAAATAAAAG+AGG + chr6_2:71036919-71036938 None:intergenic 20.0%
!! TTATGTCATATATAAATTCG+CGG - chr6_2:71036951-71036970 Msa0926970:intron 20.0%
!! AGTGGAAATAAAATAGATAT+TGG - chr6_2:71037060-71037079 Msa0926970:intron 20.0%
!! TAACATATTATTTGTTTCAG+CGG - chr6_2:71037116-71037135 Msa0926970:CDS 20.0%
!! CATGAATATAAAATTATCGA+TGG - chr6_2:71037342-71037361 Msa0926970:intron 20.0%
!! CATGAATATAAAATTATCGA+TGG - chr6_2:71037342-71037361 Msa0926970:intron 20.0%
!!! ATCTCTTTTTTGGAATTTCA+TGG + chr6_2:71035315-71035334 None:intergenic 25.0%
!!! TGTCCTTAATATCTCTTTTT+TGG + chr6_2:71035325-71035344 None:intergenic 25.0%
! TCTATCAAATACTCTAGTTA+AGG + chr6_2:71035419-71035438 None:intergenic 25.0%
! TATATCTGCTATCATTGAAA+TGG + chr6_2:71035468-71035487 None:intergenic 25.0%
!!! ACAAATTTTTTCTTTCATGG+AGG - chr6_2:71035613-71035632 Msa0926970:intron 25.0%
! AACAATACTAAATTGTGGTT+TGG + chr6_2:71036110-71036129 None:intergenic 25.0%
! GGTTTGAAAAATCAAAATTG+GGG + chr6_2:71036139-71036158 None:intergenic 25.0%
! GGGTTTGAAAAATCAAAATT+GGG + chr6_2:71036140-71036159 None:intergenic 25.0%
! AGGGTTTGAAAAATCAAAAT+TGG + chr6_2:71036141-71036160 None:intergenic 25.0%
! TACTTAATACTTATACGGTT+GGG - chr6_2:71036296-71036315 Msa0926970:intron 25.0%
! CCTATAAGGTAATACTTATA+CGG - chr6_2:71036504-71036523 Msa0926970:intron 25.0%
!! CCACTAAAATCATTTTCATT+GGG + chr6_2:71037045-71037064 None:intergenic 25.0%
!! TCCACTAAAATCATTTTCAT+TGG + chr6_2:71037046-71037065 None:intergenic 25.0%
! AATAGATATTGGACTTTCAA+TGG - chr6_2:71037071-71037090 Msa0926970:intron 25.0%
!!! ATTAAACAAGTTTCTAGAAC+AGG - chr6_2:71037180-71037199 Msa0926970:CDS 25.0%
!!! TTAAACAAGTTTCTAGAACA+GGG - chr6_2:71037181-71037200 Msa0926970:CDS 25.0%
!! TACATCGAATAAAGTACTTT+AGG - chr6_2:71037407-71037426 Msa0926970:CDS 25.0%
! TGAATTAAGTTCATGTAAAG+TGG + chr6_2:71037441-71037460 None:intergenic 25.0%
!!! ATCTCTTTTTTGGAATTTCA+TGG + chr6_2:71035315-71035334 None:intergenic 25.0%
!!! TGTCCTTAATATCTCTTTTT+TGG + chr6_2:71035325-71035344 None:intergenic 25.0%
! TCTATCAAATACTCTAGTTA+AGG + chr6_2:71035419-71035438 None:intergenic 25.0%
! TATATCTGCTATCATTGAAA+TGG + chr6_2:71035468-71035487 None:intergenic 25.0%
!!! ACAAATTTTTTCTTTCATGG+AGG - chr6_2:71035613-71035632 Msa0926970:intron 25.0%
! AACAATACTAAATTGTGGTT+TGG + chr6_2:71036110-71036129 None:intergenic 25.0%
! GGTTTGAAAAATCAAAATTG+GGG + chr6_2:71036139-71036158 None:intergenic 25.0%
! GGGTTTGAAAAATCAAAATT+GGG + chr6_2:71036140-71036159 None:intergenic 25.0%
! AGGGTTTGAAAAATCAAAAT+TGG + chr6_2:71036141-71036160 None:intergenic 25.0%
! TACTTAATACTTATACGGTT+GGG - chr6_2:71036296-71036315 Msa0926970:intron 25.0%
! CCTATAAGGTAATACTTATA+CGG - chr6_2:71036504-71036523 Msa0926970:intron 25.0%
!! CCACTAAAATCATTTTCATT+GGG + chr6_2:71037045-71037064 None:intergenic 25.0%
!! TCCACTAAAATCATTTTCAT+TGG + chr6_2:71037046-71037065 None:intergenic 25.0%
! AATAGATATTGGACTTTCAA+TGG - chr6_2:71037071-71037090 Msa0926970:intron 25.0%
!!! ATTAAACAAGTTTCTAGAAC+AGG - chr6_2:71037180-71037199 Msa0926970:CDS 25.0%
!!! TTAAACAAGTTTCTAGAACA+GGG - chr6_2:71037181-71037200 Msa0926970:CDS 25.0%
!! TACATCGAATAAAGTACTTT+AGG - chr6_2:71037407-71037426 Msa0926970:CDS 25.0%
! TGAATTAAGTTCATGTAAAG+TGG + chr6_2:71037441-71037460 None:intergenic 25.0%
GATATTAAGGACAAGAGTTT+AGG - chr6_2:71035332-71035351 Msa0926970:CDS 30.0%
GAAGTGAAATACATCATTGA+CGG - chr6_2:71035376-71035395 Msa0926970:CDS 30.0%
AAGTGAAATACATCATTGAC+GGG - chr6_2:71035377-71035396 Msa0926970:CDS 30.0%
! ACTAGAGTATTTGATAGAGA+TGG - chr6_2:71035421-71035440 Msa0926970:CDS 30.0%
!!! AATTTTTTCTTTCATGGAGG+AGG - chr6_2:71035616-71035635 Msa0926970:intron 30.0%
!!! TTTTCTTTAAGGTGGGAAAT+AGG + chr6_2:71035794-71035813 None:intergenic 30.0%
TTTCAGCTTGCATACAAAAA+GGG - chr6_2:71035885-71035904 Msa0926970:intron 30.0%
ATAACATAGAACAAACCTGA+AGG + chr6_2:71036006-71036025 None:intergenic 30.0%
!!! GCTGCTTGTTATTTTGTTAA+TGG - chr6_2:71036056-71036075 Msa0926970:intron 30.0%
TTATACTACTTATACGGTTG+TGG - chr6_2:71036240-71036259 Msa0926970:intron 30.0%
TATACTACTTATACGGTTGT+GGG - chr6_2:71036241-71036260 Msa0926970:intron 30.0%
TTTGGGTGATTTAGTATTGT+TGG - chr6_2:71036267-71036286 Msa0926970:intron 30.0%
CTACTTAATACTTATACGGT+TGG - chr6_2:71036295-71036314 Msa0926970:intron 30.0%
CCGTATAAGTATTACCTTAT+AGG + chr6_2:71036507-71036526 None:intergenic 30.0%
AATGTGAATCGATGTTTAGT+AGG - chr6_2:71036776-71036795 Msa0926970:intron 30.0%
! CCCAATGAAAATGATTTTAG+TGG - chr6_2:71037042-71037061 Msa0926970:intron 30.0%
ATATTATTTGTTTCAGCGGA+CGG - chr6_2:71037120-71037139 Msa0926970:CDS 30.0%
GATATTAAGGACAAGAGTTT+AGG - chr6_2:71035332-71035351 Msa0926970:CDS 30.0%
GAAGTGAAATACATCATTGA+CGG - chr6_2:71035376-71035395 Msa0926970:CDS 30.0%
AAGTGAAATACATCATTGAC+GGG - chr6_2:71035377-71035396 Msa0926970:CDS 30.0%
! ACTAGAGTATTTGATAGAGA+TGG - chr6_2:71035421-71035440 Msa0926970:CDS 30.0%
!!! AATTTTTTCTTTCATGGAGG+AGG - chr6_2:71035616-71035635 Msa0926970:intron 30.0%
!!! TTTTCTTTAAGGTGGGAAAT+AGG + chr6_2:71035794-71035813 None:intergenic 30.0%
TTTCAGCTTGCATACAAAAA+GGG - chr6_2:71035885-71035904 Msa0926970:intron 30.0%
ATAACATAGAACAAACCTGA+AGG + chr6_2:71036006-71036025 None:intergenic 30.0%
!!! GCTGCTTGTTATTTTGTTAA+TGG - chr6_2:71036056-71036075 Msa0926970:intron 30.0%
TTATACTACTTATACGGTTG+TGG - chr6_2:71036240-71036259 Msa0926970:intron 30.0%
TATACTACTTATACGGTTGT+GGG - chr6_2:71036241-71036260 Msa0926970:intron 30.0%
TTTGGGTGATTTAGTATTGT+TGG - chr6_2:71036267-71036286 Msa0926970:intron 30.0%
CTACTTAATACTTATACGGT+TGG - chr6_2:71036295-71036314 Msa0926970:intron 30.0%
CCGTATAAGTATTACCTTAT+AGG + chr6_2:71036507-71036526 None:intergenic 30.0%
AATGTGAATCGATGTTTAGT+AGG - chr6_2:71036776-71036795 Msa0926970:intron 30.0%
! CCCAATGAAAATGATTTTAG+TGG - chr6_2:71037042-71037061 Msa0926970:intron 30.0%
ATATTATTTGTTTCAGCGGA+CGG - chr6_2:71037120-71037139 Msa0926970:CDS 30.0%
GAATCCTTACAAAGTTACTG+TGG - chr6_2:71035682-71035701 Msa0926970:intron 35.0%
TTCAGCTTGCGTACAAAATT+AGG - chr6_2:71035844-71035863 Msa0926970:intron 35.0%
GTTTCAGCTTGCATACAAAA+AGG - chr6_2:71035884-71035903 Msa0926970:intron 35.0%
! TTATACGGTTGTGGGATTTT+TGG - chr6_2:71036249-71036268 Msa0926970:intron 35.0%
! TATACGGTTGTGGGATTTTT+GGG - chr6_2:71036250-71036269 Msa0926970:intron 35.0%
TGTATAAACTTGCAGAGATG+AGG - chr6_2:71036705-71036724 Msa0926970:intron 35.0%
TACGAAGCAATGTTGAAGAA+GGG + chr6_2:71037158-71037177 None:intergenic 35.0%
ATACGAAGCAATGTTGAAGA+AGG + chr6_2:71037159-71037178 None:intergenic 35.0%
!! AAGTTTCTAGAACAGGGTAT+TGG - chr6_2:71037187-71037206 Msa0926970:CDS 35.0%
GAATCCTTACAAAGTTACTG+TGG - chr6_2:71035682-71035701 Msa0926970:intron 35.0%
TTCAGCTTGCGTACAAAATT+AGG - chr6_2:71035844-71035863 Msa0926970:intron 35.0%
GTTTCAGCTTGCATACAAAA+AGG - chr6_2:71035884-71035903 Msa0926970:intron 35.0%
! TTATACGGTTGTGGGATTTT+TGG - chr6_2:71036249-71036268 Msa0926970:intron 35.0%
! TATACGGTTGTGGGATTTTT+GGG - chr6_2:71036250-71036269 Msa0926970:intron 35.0%
TGTATAAACTTGCAGAGATG+AGG - chr6_2:71036705-71036724 Msa0926970:intron 35.0%
TACGAAGCAATGTTGAAGAA+GGG + chr6_2:71037158-71037177 None:intergenic 35.0%
ATACGAAGCAATGTTGAAGA+AGG + chr6_2:71037159-71037178 None:intergenic 35.0%
!! AAGTTTCTAGAACAGGGTAT+TGG - chr6_2:71037187-71037206 Msa0926970:CDS 35.0%
GGACAAGAGTTTAGGAAAGA+CGG - chr6_2:71035340-71035359 Msa0926970:CDS 40.0%
AAAGAATCCGCGACTTTCAT+AGG + chr6_2:71035587-71035606 None:intergenic 40.0%
TGAAAGTCGCGGATTCTTTA+AGG - chr6_2:71035588-71035607 Msa0926970:intron 40.0%
! TTTTCTTTCATGGAGGAGGA+AGG - chr6_2:71035620-71035639 Msa0926970:intron 40.0%
TTTCTTTCATGGAGGAGGAA+GGG - chr6_2:71035621-71035640 Msa0926970:intron 40.0%
TGTGCCACAGTAACTTTGTA+AGG + chr6_2:71035689-71035708 None:intergenic 40.0%
TTACAAAGTTACTGTGGCAC+AGG - chr6_2:71035688-71035707 Msa0926970:intron 40.0%
TACAAAGTTACTGTGGCACA+GGG - chr6_2:71035689-71035708 Msa0926970:intron 40.0%
ATAGAACAAACCTGAAGGAG+AGG + chr6_2:71036001-71036020 None:intergenic 40.0%
GTGTGATTGAGTAGAGAGAA+TGG - chr6_2:71036181-71036200 Msa0926970:intron 40.0%
GTAGAGAGAATGGACACTTA+CGG - chr6_2:71036191-71036210 Msa0926970:intron 40.0%
GTTGTGTCATGTGTGCTAAT+TGG - chr6_2:71036601-71036620 Msa0926970:intron 40.0%
ATAAACTTGCAGAGATGAGG+AGG - chr6_2:71036708-71036727 Msa0926970:intron 40.0%
AGTAGGCTCTACAAAAATCC+TGG - chr6_2:71036793-71036812 Msa0926970:intron 40.0%
!! TTCTAGAACAGGGTATTGGA+AGG - chr6_2:71037191-71037210 Msa0926970:CDS 40.0%
!! TCTAGAACAGGGTATTGGAA+GGG - chr6_2:71037192-71037211 Msa0926970:CDS 40.0%
ATGAGCATGATTCTGACACT+GGG - chr6_2:71037229-71037248 Msa0926970:CDS 40.0%
GGACAAGAGTTTAGGAAAGA+CGG - chr6_2:71035340-71035359 Msa0926970:CDS 40.0%
AAAGAATCCGCGACTTTCAT+AGG + chr6_2:71035587-71035606 None:intergenic 40.0%
TGAAAGTCGCGGATTCTTTA+AGG - chr6_2:71035588-71035607 Msa0926970:intron 40.0%
! TTTTCTTTCATGGAGGAGGA+AGG - chr6_2:71035620-71035639 Msa0926970:intron 40.0%
TTTCTTTCATGGAGGAGGAA+GGG - chr6_2:71035621-71035640 Msa0926970:intron 40.0%
TGTGCCACAGTAACTTTGTA+AGG + chr6_2:71035689-71035708 None:intergenic 40.0%
TTACAAAGTTACTGTGGCAC+AGG - chr6_2:71035688-71035707 Msa0926970:intron 40.0%
TACAAAGTTACTGTGGCACA+GGG - chr6_2:71035689-71035708 Msa0926970:intron 40.0%
ATAGAACAAACCTGAAGGAG+AGG + chr6_2:71036001-71036020 None:intergenic 40.0%
GTGTGATTGAGTAGAGAGAA+TGG - chr6_2:71036181-71036200 Msa0926970:intron 40.0%
GTAGAGAGAATGGACACTTA+CGG - chr6_2:71036191-71036210 Msa0926970:intron 40.0%
GTTGTGTCATGTGTGCTAAT+TGG - chr6_2:71036601-71036620 Msa0926970:intron 40.0%
ATAAACTTGCAGAGATGAGG+AGG - chr6_2:71036708-71036727 Msa0926970:intron 40.0%
AGTAGGCTCTACAAAAATCC+TGG - chr6_2:71036793-71036812 Msa0926970:intron 40.0%
!! TTCTAGAACAGGGTATTGGA+AGG - chr6_2:71037191-71037210 Msa0926970:CDS 40.0%
!! TCTAGAACAGGGTATTGGAA+GGG - chr6_2:71037192-71037211 Msa0926970:CDS 40.0%
ATGAGCATGATTCTGACACT+GGG - chr6_2:71037229-71037248 Msa0926970:CDS 40.0%
GATAGAGATGGTAGCACTCA+AGG - chr6_2:71035433-71035452 Msa0926970:CDS 45.0%
AACGTGACCTATGAAAGTCG+CGG - chr6_2:71035577-71035596 Msa0926970:intron 45.0%
TTCTTTCATGGAGGAGGAAG+GGG - chr6_2:71035622-71035641 Msa0926970:intron 45.0%
GAACAGAATAGCATGCAGAG+AGG - chr6_2:71035656-71035675 Msa0926970:intron 45.0%
ACAAAGTTACTGTGGCACAG+GGG - chr6_2:71035690-71035709 Msa0926970:intron 45.0%
AAGGTGGGAAATAGGCTGAT+GGG + chr6_2:71035786-71035805 None:intergenic 45.0%
TAAGGTGGGAAATAGGCTGA+TGG + chr6_2:71035787-71035806 None:intergenic 45.0%
AACAAACCTGAAGGAGAGGA+AGG + chr6_2:71035997-71036016 None:intergenic 45.0%
AATGGACACTTACGGATGTG+TGG - chr6_2:71036199-71036218 Msa0926970:intron 45.0%
! ACTTATACGGTTGGGTTGTG+TGG - chr6_2:71036304-71036323 Msa0926970:intron 45.0%
! TGCAGAGATGAGGAGGTTTT+TGG - chr6_2:71036715-71036734 Msa0926970:intron 45.0%
TCGCGGTAAAAATTTAGCCC+AGG - chr6_2:71036968-71036987 Msa0926970:intron 45.0%
ATAATAGTGTGCCACAGCAG+TGG + chr6_2:71037016-71037035 None:intergenic 45.0%
CATGAGCATGATTCTGACAC+TGG - chr6_2:71037228-71037247 Msa0926970:CDS 45.0%
GATAGAGATGGTAGCACTCA+AGG - chr6_2:71035433-71035452 Msa0926970:CDS 45.0%
AACGTGACCTATGAAAGTCG+CGG - chr6_2:71035577-71035596 Msa0926970:intron 45.0%
TTCTTTCATGGAGGAGGAAG+GGG - chr6_2:71035622-71035641 Msa0926970:intron 45.0%
GAACAGAATAGCATGCAGAG+AGG - chr6_2:71035656-71035675 Msa0926970:intron 45.0%
ACAAAGTTACTGTGGCACAG+GGG - chr6_2:71035690-71035709 Msa0926970:intron 45.0%
AAGGTGGGAAATAGGCTGAT+GGG + chr6_2:71035786-71035805 None:intergenic 45.0%
TAAGGTGGGAAATAGGCTGA+TGG + chr6_2:71035787-71035806 None:intergenic 45.0%
AACAAACCTGAAGGAGAGGA+AGG + chr6_2:71035997-71036016 None:intergenic 45.0%
AATGGACACTTACGGATGTG+TGG - chr6_2:71036199-71036218 Msa0926970:intron 45.0%
! ACTTATACGGTTGGGTTGTG+TGG - chr6_2:71036304-71036323 Msa0926970:intron 45.0%
! TGCAGAGATGAGGAGGTTTT+TGG - chr6_2:71036715-71036734 Msa0926970:intron 45.0%
TCGCGGTAAAAATTTAGCCC+AGG - chr6_2:71036968-71036987 Msa0926970:intron 45.0%
ATAATAGTGTGCCACAGCAG+TGG + chr6_2:71037016-71037035 None:intergenic 45.0%
CATGAGCATGATTCTGACAC+TGG - chr6_2:71037228-71037247 Msa0926970:CDS 45.0%
!! TATATATAAATAGTTATAAA+TGG + chr6_2:71036931-71036950 None:intergenic 5.0%
!! TATATATAAATAGTTATAAA+TGG + chr6_2:71036931-71036950 None:intergenic 5.0%
!! GGGAAATAGGCTGATGGGTT+GGG + chr6_2:71035781-71035800 None:intergenic 50.0%
! TGGGAAATAGGCTGATGGGT+TGG + chr6_2:71035782-71035801 None:intergenic 50.0%
TGAAGGAGAGGAAGGTCAGA+AGG + chr6_2:71035989-71036008 None:intergenic 50.0%
TTCTGACCTTCCTCTCCTTC+AGG - chr6_2:71035988-71036007 Msa0926970:intron 50.0%
! GGAAAGAGCACGCTATTGTC+AGG - chr6_2:71036840-71036859 Msa0926970:intron 50.0%
!! CCAGGAATTTTCGAGAGCCT+GGG + chr6_2:71036988-71037007 None:intergenic 50.0%
!! GTTGAAGAAGGGCGTTGAAC+AGG + chr6_2:71037147-71037166 None:intergenic 50.0%
!! GGGAAATAGGCTGATGGGTT+GGG + chr6_2:71035781-71035800 None:intergenic 50.0%
! TGGGAAATAGGCTGATGGGT+TGG + chr6_2:71035782-71035801 None:intergenic 50.0%
TGAAGGAGAGGAAGGTCAGA+AGG + chr6_2:71035989-71036008 None:intergenic 50.0%
TTCTGACCTTCCTCTCCTTC+AGG - chr6_2:71035988-71036007 Msa0926970:intron 50.0%
! GGAAAGAGCACGCTATTGTC+AGG - chr6_2:71036840-71036859 Msa0926970:intron 50.0%
!! CCAGGAATTTTCGAGAGCCT+GGG + chr6_2:71036988-71037007 None:intergenic 50.0%
!! GTTGAAGAAGGGCGTTGAAC+AGG + chr6_2:71037147-71037166 None:intergenic 50.0%
AAGTTACTGTGGCACAGGGG+CGG - chr6_2:71035693-71035712 Msa0926970:intron 55.0%
ACAGAGAGCCAGCAGAGAGT+CGG + chr6_2:71035931-71035950 None:intergenic 55.0%
! TTCCGCGACCTCTTTTGCAG+TGG + chr6_2:71036824-71036843 None:intergenic 55.0%
CCCAGGCTCTCGAAAATTCC+TGG - chr6_2:71036985-71037004 Msa0926970:intron 55.0%
!! GCCAGGAATTTTCGAGAGCC+TGG + chr6_2:71036989-71037008 None:intergenic 55.0%
ATAGTGTGCCACAGCAGTGG+CGG + chr6_2:71037013-71037032 None:intergenic 55.0%
AAGTTACTGTGGCACAGGGG+CGG - chr6_2:71035693-71035712 Msa0926970:intron 55.0%
ACAGAGAGCCAGCAGAGAGT+CGG + chr6_2:71035931-71035950 None:intergenic 55.0%
! TTCCGCGACCTCTTTTGCAG+TGG + chr6_2:71036824-71036843 None:intergenic 55.0%
CCCAGGCTCTCGAAAATTCC+TGG - chr6_2:71036985-71037004 Msa0926970:intron 55.0%
!! GCCAGGAATTTTCGAGAGCC+TGG + chr6_2:71036989-71037008 None:intergenic 55.0%
ATAGTGTGCCACAGCAGTGG+CGG + chr6_2:71037013-71037032 None:intergenic 55.0%
GGAAAGCAGAAGCAGAGCCC+GGG + chr6_2:71035748-71035767 None:intergenic 60.0%
GGGAAAGCAGAAGCAGAGCC+CGG + chr6_2:71035749-71035768 None:intergenic 60.0%
!! GATGGGTTGGGCTGATGGGT+GGG + chr6_2:71035769-71035788 None:intergenic 60.0%
!! TGATGGGTTGGGCTGATGGG+TGG + chr6_2:71035770-71035789 None:intergenic 60.0%
!! GGCTGATGGGTTGGGCTGAT+GGG + chr6_2:71035773-71035792 None:intergenic 60.0%
!! AGGCTGATGGGTTGGGCTGA+TGG + chr6_2:71035774-71035793 None:intergenic 60.0%
CCAGCAGAGAGTCGGTCTGA+AGG + chr6_2:71035923-71035942 None:intergenic 60.0%
! CCTTCAGACCGACTCTCTGC+TGG - chr6_2:71035920-71035939 Msa0926970:intron 60.0%
!! TCTTTTGCAGTGGCGGAGCC+AGG + chr6_2:71036814-71036833 None:intergenic 60.0%
TGGCTCCGCCACTGCAAAAG+AGG - chr6_2:71036813-71036832 Msa0926970:intron 60.0%
! CGCGACCTCTTTTGCAGTGG+CGG + chr6_2:71036821-71036840 None:intergenic 60.0%
CGCCACTGCAAAAGAGGTCG+CGG - chr6_2:71036819-71036838 Msa0926970:intron 60.0%
GGAAAGCAGAAGCAGAGCCC+GGG + chr6_2:71035748-71035767 None:intergenic 60.0%
GGGAAAGCAGAAGCAGAGCC+CGG + chr6_2:71035749-71035768 None:intergenic 60.0%
!! GATGGGTTGGGCTGATGGGT+GGG + chr6_2:71035769-71035788 None:intergenic 60.0%
!! TGATGGGTTGGGCTGATGGG+TGG + chr6_2:71035770-71035789 None:intergenic 60.0%
!! GGCTGATGGGTTGGGCTGAT+GGG + chr6_2:71035773-71035792 None:intergenic 60.0%
!! AGGCTGATGGGTTGGGCTGA+TGG + chr6_2:71035774-71035793 None:intergenic 60.0%
CCAGCAGAGAGTCGGTCTGA+AGG + chr6_2:71035923-71035942 None:intergenic 60.0%
! CCTTCAGACCGACTCTCTGC+TGG - chr6_2:71035920-71035939 Msa0926970:intron 60.0%
!! TCTTTTGCAGTGGCGGAGCC+AGG + chr6_2:71036814-71036833 None:intergenic 60.0%
TGGCTCCGCCACTGCAAAAG+AGG - chr6_2:71036813-71036832 Msa0926970:intron 60.0%
! CGCGACCTCTTTTGCAGTGG+CGG + chr6_2:71036821-71036840 None:intergenic 60.0%
CGCCACTGCAAAAGAGGTCG+CGG - chr6_2:71036819-71036838 Msa0926970:intron 60.0%
! TTCCACCCCCCAGCTAGCCT+GGG - chr6_2:71035716-71035735 Msa0926970:intron 65.0%
! TAGTGCCCAGGCTAGCTGGG+GGG + chr6_2:71035724-71035743 None:intergenic 65.0%
! CTAGTGCCCAGGCTAGCTGG+GGG + chr6_2:71035725-71035744 None:intergenic 65.0%
! GCTAGTGCCCAGGCTAGCTG+GGG + chr6_2:71035726-71035745 None:intergenic 65.0%
! GGCTAGTGCCCAGGCTAGCT+GGG + chr6_2:71035727-71035746 None:intergenic 65.0%
! AGCTAGCCTGGGCACTAGCC+CGG - chr6_2:71035727-71035746 Msa0926970:intron 65.0%
! TTCCACCCCCCAGCTAGCCT+GGG - chr6_2:71035716-71035735 Msa0926970:intron 65.0%
! TAGTGCCCAGGCTAGCTGGG+GGG + chr6_2:71035724-71035743 None:intergenic 65.0%
! CTAGTGCCCAGGCTAGCTGG+GGG + chr6_2:71035725-71035744 None:intergenic 65.0%
! GCTAGTGCCCAGGCTAGCTG+GGG + chr6_2:71035726-71035745 None:intergenic 65.0%
! GGCTAGTGCCCAGGCTAGCT+GGG + chr6_2:71035727-71035746 None:intergenic 65.0%
! AGCTAGCCTGGGCACTAGCC+CGG - chr6_2:71035727-71035746 Msa0926970:intron 65.0%
GTTCCACCCCCCAGCTAGCC+TGG - chr6_2:71035715-71035734 Msa0926970:intron 70.0%
! GGGCTAGTGCCCAGGCTAGC+TGG + chr6_2:71035728-71035747 None:intergenic 70.0%
! GCTAGCCTGGGCACTAGCCC+GGG - chr6_2:71035728-71035747 Msa0926970:intron 70.0%
TCCTGGCTCCGCCACTGCTG+TGG - chr6_2:71037002-71037021 Msa0926970:intron 70.0%
GTTCCACCCCCCAGCTAGCC+TGG - chr6_2:71035715-71035734 Msa0926970:intron 70.0%
! GGGCTAGTGCCCAGGCTAGC+TGG + chr6_2:71035728-71035747 None:intergenic 70.0%
! GCTAGCCTGGGCACTAGCCC+GGG - chr6_2:71035728-71035747 Msa0926970:intron 70.0%
TCCTGGCTCCGCCACTGCTG+TGG - chr6_2:71037002-71037021 Msa0926970:intron 70.0%
! TGCCCAGGCTAGCTGGGGGG+TGG + chr6_2:71035721-71035740 None:intergenic 75.0%
!! CAGAGCCCGGGCTAGTGCCC+AGG + chr6_2:71035736-71035755 None:intergenic 75.0%
! GCCACAGCAGTGGCGGAGCC+AGG + chr6_2:71037006-71037025 None:intergenic 75.0%
! TGCCCAGGCTAGCTGGGGGG+TGG + chr6_2:71035721-71035740 None:intergenic 75.0%
!! CAGAGCCCGGGCTAGTGCCC+AGG + chr6_2:71035736-71035755 None:intergenic 75.0%
! GCCACAGCAGTGGCGGAGCC+AGG + chr6_2:71037006-71037025 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 71035260 71037462 71035260 ID=Msa0926970;Name=Msa0926970
chr6_2 mRNA 71035260 71037462 71035260 ID=Msa0926970-mRNA-1;Parent=Msa0926970;Name=Msa0926970-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0.33|1|0.5|0.66|3|34|209
chr6_2 exon 71035260 71035586 71035260 ID=Msa0926970-mRNA-1:exon:11749;Parent=Msa0926970-mRNA-1
chr6_2 exon 71037079 71037296 71037079 ID=Msa0926970-mRNA-1:exon:11748;Parent=Msa0926970-mRNA-1
chr6_2 exon 71037344 71037462 71037344 ID=Msa0926970-mRNA-1:exon:11747;Parent=Msa0926970-mRNA-1
chr6_2 CDS 71037344 71037462 71037344 ID=Msa0926970-mRNA-1:cds;Parent=Msa0926970-mRNA-1
chr6_2 CDS 71037079 71037296 71037079 ID=Msa0926970-mRNA-1:cds;Parent=Msa0926970-mRNA-1
chr6_2 CDS 71035294 71035586 71035294 ID=Msa0926970-mRNA-1:cds;Parent=Msa0926970-mRNA-1
chr6_2 three_prime_UTR 71035260 71035293 71035260 ID=Msa0926970-mRNA-1:three_prime_utr;Parent=Msa0926970-mRNA-1
Gene Sequence

>Msa0926970

ATGGGAAATAGTTTTGCTAGTAATATGAATATAAAAGTTGGAAGTAATCTTACCATGAAATTCCAAAAAAGAGATATTAAGGACAAGAGTTTAGGAAAGACGGACTGCTGTGCTGTGAAAGTATTTGATAGAGATGGTAGCACTCAAGGTTTAATACTCCATTTCAATGATAGCAGATATAGAAGTCAATTTATCTTTTTATATATAGCTAAAGCTGAAAATGATCTGCTCAAGAAAATTAACTTCTCTTCAACACTACAGCTTTCTGATAACGTGACCTATGAAAGTCGCGGATTCTTTAAGGAAACAAATTTTTTCTTTCATGGAGGAGGAAGGGCGGACGGTCCTGTTCAACGCCCTTCTTCAACATTGCTTCGTATGATTAAACAAGTTTCTAGAACAGGGTATTGGAAGGGTTTTGAGACTACTCATGAGCATGATTCTGACACTGGGAGTGTAAATAACAGAGTAGCTGTTGTAAATAACAAAGAAAATATATTTTGGGGAGATAATAATGCTAGTGTGATTACTAATTATCACTTTCATGAATATAAAATTATCGATGGGAATACTAATCCCTATCATGAATATAAAATTATCGATGGGAATACATCGAATAAAGTACTTTAG

Protein sequence

>Msa0926970

MGNSFASNMNIKVGSNLTMKFQKRDIKDKSLGKTDCCAVKVFDRDGSTQGLILHFNDSRYRSQFIFLYIAKAENDLLKKINFSSTLQLSDNVTYESRGFFKETNFFFHGGGRADGPVQRPSSTLLRMIKQVSRTGYWKGFETTHEHDSDTGSVNNRVAVVNNKENIFWGDNNASVITNYHFHEYKIIDGNTNPYHEYKIIDGNTSNKVL*