Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0926970 | KEH27158.1 | 48.780 | 287 | 67 | 5 | 1 | 209 | 1 | 285 | 1.16e-61 | 204 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0926970 | Msa1410620 | 0.902823 | 6.535095e-79 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0926970 | MtrunA17_Chr6g0486181 | 48.780 | 287 | 67 | 5 | 1 | 209 | 1 | 285 | 1.07e-65 | 204 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 28 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAAGTCGCGGATTCTTTA+AGG | 0.149783 | 6_2:-71037112 | Msa0926970:CDS |
ATAACAAAGAAAATATATTT+TGG | 0.162580 | 6_2:-71035420 | Msa0926970:CDS |
GATATTAAGGACAAGAGTTT+AGG | 0.308639 | 6_2:-71037368 | Msa0926970:CDS |
ATTAAACAAGTTTCTAGAAC+AGG | 0.359747 | 6_2:-71035520 | Msa0926970:CDS |
TTCTTTCATGGAGGAGGAAG+GGG | 0.389696 | 6_2:-71037078 | Msa0926970:intron |
AAAGAATCCGCGACTTTCAT+AGG | 0.395410 | 6_2:+71037116 | None:intergenic |
TACATCGAATAAAGTACTTT+AGG | 0.397763 | 6_2:-71035293 | Msa0926970:exon |
GTTGAAGAAGGGCGTTGAAC+AGG | 0.397808 | 6_2:+71035556 | None:intergenic |
TATATCTGCTATCATTGAAA+TGG | 0.397917 | 6_2:+71037235 | None:intergenic |
AGTAATATGAATATAAAAGT+TGG | 0.399294 | 6_2:-71037422 | Msa0926970:CDS |
TGAATTAAGTTCATGTAAAG+TGG | 0.425996 | 6_2:+71035262 | None:intergenic |
AAGTTTCTAGAACAGGGTAT+TGG | 0.464513 | 6_2:-71035513 | Msa0926970:CDS |
GATAGAGATGGTAGCACTCA+AGG | 0.505801 | 6_2:-71037267 | Msa0926970:CDS |
CATGAATATAAAATTATCGA+TGG | 0.508016 | 6_2:-71035358 | Msa0926970:CDS |
ATACGAAGCAATGTTGAAGA+AGG | 0.520901 | 6_2:+71035544 | None:intergenic |
ACTAGAGTATTTGATAGAGA+TGG | 0.527025 | 6_2:-71037279 | Msa0926970:intron |
CATGAATATAAAATTATCGA+TGG | 0.529492 | 6_2:-71035319 | Msa0926970:CDS |
CATGAGCATGATTCTGACAC+TGG | 0.533230 | 6_2:-71035472 | Msa0926970:CDS |
TTCTAGAACAGGGTATTGGA+AGG | 0.541064 | 6_2:-71035509 | Msa0926970:CDS |
TTTCTTTCATGGAGGAGGAA+GGG | 0.543712 | 6_2:-71037079 | Msa0926970:CDS |
GGACAAGAGTTTAGGAAAGA+CGG | 0.564396 | 6_2:-71037360 | Msa0926970:CDS |
ATGAATATAAAATTATCGAT+GGG | 0.565717 | 6_2:-71035357 | Msa0926970:CDS |
TCTAGAACAGGGTATTGGAA+GGG | 0.578826 | 6_2:-71035508 | Msa0926970:CDS |
ATGAATATAAAATTATCGAT+GGG | 0.596279 | 6_2:-71035318 | Msa0926970:CDS |
TACGAAGCAATGTTGAAGAA+GGG | 0.610458 | 6_2:+71035545 | None:intergenic |
ATGAGCATGATTCTGACACT+GGG | 0.630580 | 6_2:-71035471 | Msa0926970:CDS |
TTAAACAAGTTTCTAGAACA+GGG | 0.653611 | 6_2:-71035519 | Msa0926970:CDS |
AACGTGACCTATGAAAGTCG+CGG | 0.766478 | 6_2:-71037123 | Msa0926970:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAATTATACTACTTATA+CGG | - | chr6_2:71036234-71036253 | Msa0926970:intron | 10.0% |
!!! | AAATAATATGTTATTTGATA+CGG | + | chr6_2:71037109-71037128 | None:intergenic | 10.0% |
!!! | ATAACAAAGAAAATATATTT+TGG | - | chr6_2:71037280-71037299 | Msa0926970:intron | 10.0% |
!!! | TAACAAAGAAAATATATTTT+GGG | - | chr6_2:71037281-71037300 | Msa0926970:intron | 10.0% |
!!! | ATAATTTTATATTCATGATA+GGG | + | chr6_2:71037378-71037397 | None:intergenic | 10.0% |
!! | AATTAATTATACTACTTATA+CGG | - | chr6_2:71036234-71036253 | Msa0926970:intron | 10.0% |
!!! | AAATAATATGTTATTTGATA+CGG | + | chr6_2:71037109-71037128 | None:intergenic | 10.0% |
!!! | ATAACAAAGAAAATATATTT+TGG | - | chr6_2:71037280-71037299 | Msa0926970:intron | 10.0% |
!!! | TAACAAAGAAAATATATTTT+GGG | - | chr6_2:71037281-71037300 | Msa0926970:intron | 10.0% |
!!! | ATAATTTTATATTCATGATA+GGG | + | chr6_2:71037378-71037397 | None:intergenic | 10.0% |
!! | AGTAATATGAATATAAAAGT+TGG | - | chr6_2:71035278-71035297 | Msa0926970:exon | 15.0% |
!! | CTTAAAGAAAAAGAAAAAAA+GGG | - | chr6_2:71035803-71035822 | Msa0926970:intron | 15.0% |
!! | TATACTACTTAATACTTATA+CGG | - | chr6_2:71036291-71036310 | Msa0926970:intron | 15.0% |
!! | TATACTACTTAATACTTATA+CGG | - | chr6_2:71036291-71036310 | Msa0926970:intron | 15.0% |
!!! | TATCTAAATTTTGTGTTAAT+TGG | - | chr6_2:71036465-71036484 | Msa0926970:intron | 15.0% |
!!! | TATCTAAATTTTGTGTTAAT+TGG | - | chr6_2:71036465-71036484 | Msa0926970:intron | 15.0% |
!! | AATTGGTTATAATACTTATA+AGG | - | chr6_2:71036579-71036598 | Msa0926970:intron | 15.0% |
!!! | AACAAAGAAAATATATTTTG+GGG | - | chr6_2:71037282-71037301 | Msa0926970:intron | 15.0% |
!! | ATGAATATAAAATTATCGAT+GGG | - | chr6_2:71037343-71037362 | Msa0926970:intron | 15.0% |
!!! | GATAATTTTATATTCATGAT+AGG | + | chr6_2:71037379-71037398 | None:intergenic | 15.0% |
!! | ATGAATATAAAATTATCGAT+GGG | - | chr6_2:71037343-71037362 | Msa0926970:intron | 15.0% |
!! | AGTAATATGAATATAAAAGT+TGG | - | chr6_2:71035278-71035297 | Msa0926970:exon | 15.0% |
!! | CTTAAAGAAAAAGAAAAAAA+GGG | - | chr6_2:71035803-71035822 | Msa0926970:intron | 15.0% |
!! | TATACTACTTAATACTTATA+CGG | - | chr6_2:71036291-71036310 | Msa0926970:intron | 15.0% |
!! | TATACTACTTAATACTTATA+CGG | - | chr6_2:71036291-71036310 | Msa0926970:intron | 15.0% |
!!! | TATCTAAATTTTGTGTTAAT+TGG | - | chr6_2:71036465-71036484 | Msa0926970:intron | 15.0% |
!!! | TATCTAAATTTTGTGTTAAT+TGG | - | chr6_2:71036465-71036484 | Msa0926970:intron | 15.0% |
!! | AATTGGTTATAATACTTATA+AGG | - | chr6_2:71036579-71036598 | Msa0926970:intron | 15.0% |
!!! | AACAAAGAAAATATATTTTG+GGG | - | chr6_2:71037282-71037301 | Msa0926970:intron | 15.0% |
!! | ATGAATATAAAATTATCGAT+GGG | - | chr6_2:71037343-71037362 | Msa0926970:intron | 15.0% |
!!! | GATAATTTTATATTCATGAT+AGG | + | chr6_2:71037379-71037398 | None:intergenic | 15.0% |
!! | ATGAATATAAAATTATCGAT+GGG | - | chr6_2:71037343-71037362 | Msa0926970:intron | 15.0% |
!! | ATTCCAAAAAAGAGATATTA+AGG | - | chr6_2:71035319-71035338 | Msa0926970:CDS | 20.0% |
!!! | GAAACAAATTTTTTCTTTCA+TGG | - | chr6_2:71035610-71035629 | Msa0926970:intron | 20.0% |
!!! | TTTTTCTTTTTCTTTAAGGT+GGG | + | chr6_2:71035801-71035820 | None:intergenic | 20.0% |
!!! | TTTTTTCTTTTTCTTTAAGG+TGG | + | chr6_2:71035802-71035821 | None:intergenic | 20.0% |
!!! | CCTTTTTTTCTTTTTCTTTA+AGG | + | chr6_2:71035805-71035824 | None:intergenic | 20.0% |
!! | CCTTAAAGAAAAAGAAAAAA+AGG | - | chr6_2:71035802-71035821 | Msa0926970:intron | 20.0% |
!! | TAATCAACAATACTAAATTG+TGG | + | chr6_2:71036115-71036134 | None:intergenic | 20.0% |
!! | AAATGCACAATTCTAAATTA+GGG | + | chr6_2:71036160-71036179 | None:intergenic | 20.0% |
!! | AAAATGCACAATTCTAAATT+AGG | + | chr6_2:71036161-71036180 | None:intergenic | 20.0% |
!!! | CTTTAATTTTGTAAATTGTG+TGG | - | chr6_2:71036359-71036378 | Msa0926970:intron | 20.0% |
!! | TAATACTAAGTAGTATAAGT+AGG | + | chr6_2:71036389-71036408 | None:intergenic | 20.0% |
!!! | TTTTGTGTTAATTGGTTAAT+TGG | - | chr6_2:71036473-71036492 | Msa0926970:intron | 20.0% |
!! | AATTGGTTATAATACCTATA+AGG | - | chr6_2:71036490-71036509 | Msa0926970:intron | 20.0% |
!!! | TTTTGTGTTAATTGGTTAAT+TGG | - | chr6_2:71036473-71036492 | Msa0926970:intron | 20.0% |
!! | GTTATAAATGGAAATAAAAG+AGG | + | chr6_2:71036919-71036938 | None:intergenic | 20.0% |
!! | TTATGTCATATATAAATTCG+CGG | - | chr6_2:71036951-71036970 | Msa0926970:intron | 20.0% |
!! | AGTGGAAATAAAATAGATAT+TGG | - | chr6_2:71037060-71037079 | Msa0926970:intron | 20.0% |
!! | TAACATATTATTTGTTTCAG+CGG | - | chr6_2:71037116-71037135 | Msa0926970:CDS | 20.0% |
!! | CATGAATATAAAATTATCGA+TGG | - | chr6_2:71037342-71037361 | Msa0926970:intron | 20.0% |
!! | CATGAATATAAAATTATCGA+TGG | - | chr6_2:71037342-71037361 | Msa0926970:intron | 20.0% |
!! | ATTCCAAAAAAGAGATATTA+AGG | - | chr6_2:71035319-71035338 | Msa0926970:CDS | 20.0% |
!!! | GAAACAAATTTTTTCTTTCA+TGG | - | chr6_2:71035610-71035629 | Msa0926970:intron | 20.0% |
!!! | TTTTTCTTTTTCTTTAAGGT+GGG | + | chr6_2:71035801-71035820 | None:intergenic | 20.0% |
!!! | TTTTTTCTTTTTCTTTAAGG+TGG | + | chr6_2:71035802-71035821 | None:intergenic | 20.0% |
!!! | CCTTTTTTTCTTTTTCTTTA+AGG | + | chr6_2:71035805-71035824 | None:intergenic | 20.0% |
!! | CCTTAAAGAAAAAGAAAAAA+AGG | - | chr6_2:71035802-71035821 | Msa0926970:intron | 20.0% |
!! | TAATCAACAATACTAAATTG+TGG | + | chr6_2:71036115-71036134 | None:intergenic | 20.0% |
!! | AAATGCACAATTCTAAATTA+GGG | + | chr6_2:71036160-71036179 | None:intergenic | 20.0% |
!! | AAAATGCACAATTCTAAATT+AGG | + | chr6_2:71036161-71036180 | None:intergenic | 20.0% |
!!! | CTTTAATTTTGTAAATTGTG+TGG | - | chr6_2:71036359-71036378 | Msa0926970:intron | 20.0% |
!! | TAATACTAAGTAGTATAAGT+AGG | + | chr6_2:71036389-71036408 | None:intergenic | 20.0% |
!!! | TTTTGTGTTAATTGGTTAAT+TGG | - | chr6_2:71036473-71036492 | Msa0926970:intron | 20.0% |
!! | AATTGGTTATAATACCTATA+AGG | - | chr6_2:71036490-71036509 | Msa0926970:intron | 20.0% |
!!! | TTTTGTGTTAATTGGTTAAT+TGG | - | chr6_2:71036473-71036492 | Msa0926970:intron | 20.0% |
!! | GTTATAAATGGAAATAAAAG+AGG | + | chr6_2:71036919-71036938 | None:intergenic | 20.0% |
!! | TTATGTCATATATAAATTCG+CGG | - | chr6_2:71036951-71036970 | Msa0926970:intron | 20.0% |
!! | AGTGGAAATAAAATAGATAT+TGG | - | chr6_2:71037060-71037079 | Msa0926970:intron | 20.0% |
!! | TAACATATTATTTGTTTCAG+CGG | - | chr6_2:71037116-71037135 | Msa0926970:CDS | 20.0% |
!! | CATGAATATAAAATTATCGA+TGG | - | chr6_2:71037342-71037361 | Msa0926970:intron | 20.0% |
!! | CATGAATATAAAATTATCGA+TGG | - | chr6_2:71037342-71037361 | Msa0926970:intron | 20.0% |
!!! | ATCTCTTTTTTGGAATTTCA+TGG | + | chr6_2:71035315-71035334 | None:intergenic | 25.0% |
!!! | TGTCCTTAATATCTCTTTTT+TGG | + | chr6_2:71035325-71035344 | None:intergenic | 25.0% |
! | TCTATCAAATACTCTAGTTA+AGG | + | chr6_2:71035419-71035438 | None:intergenic | 25.0% |
! | TATATCTGCTATCATTGAAA+TGG | + | chr6_2:71035468-71035487 | None:intergenic | 25.0% |
!!! | ACAAATTTTTTCTTTCATGG+AGG | - | chr6_2:71035613-71035632 | Msa0926970:intron | 25.0% |
! | AACAATACTAAATTGTGGTT+TGG | + | chr6_2:71036110-71036129 | None:intergenic | 25.0% |
! | GGTTTGAAAAATCAAAATTG+GGG | + | chr6_2:71036139-71036158 | None:intergenic | 25.0% |
! | GGGTTTGAAAAATCAAAATT+GGG | + | chr6_2:71036140-71036159 | None:intergenic | 25.0% |
! | AGGGTTTGAAAAATCAAAAT+TGG | + | chr6_2:71036141-71036160 | None:intergenic | 25.0% |
! | TACTTAATACTTATACGGTT+GGG | - | chr6_2:71036296-71036315 | Msa0926970:intron | 25.0% |
! | CCTATAAGGTAATACTTATA+CGG | - | chr6_2:71036504-71036523 | Msa0926970:intron | 25.0% |
!! | CCACTAAAATCATTTTCATT+GGG | + | chr6_2:71037045-71037064 | None:intergenic | 25.0% |
!! | TCCACTAAAATCATTTTCAT+TGG | + | chr6_2:71037046-71037065 | None:intergenic | 25.0% |
! | AATAGATATTGGACTTTCAA+TGG | - | chr6_2:71037071-71037090 | Msa0926970:intron | 25.0% |
!!! | ATTAAACAAGTTTCTAGAAC+AGG | - | chr6_2:71037180-71037199 | Msa0926970:CDS | 25.0% |
!!! | TTAAACAAGTTTCTAGAACA+GGG | - | chr6_2:71037181-71037200 | Msa0926970:CDS | 25.0% |
!! | TACATCGAATAAAGTACTTT+AGG | - | chr6_2:71037407-71037426 | Msa0926970:CDS | 25.0% |
! | TGAATTAAGTTCATGTAAAG+TGG | + | chr6_2:71037441-71037460 | None:intergenic | 25.0% |
!!! | ATCTCTTTTTTGGAATTTCA+TGG | + | chr6_2:71035315-71035334 | None:intergenic | 25.0% |
!!! | TGTCCTTAATATCTCTTTTT+TGG | + | chr6_2:71035325-71035344 | None:intergenic | 25.0% |
! | TCTATCAAATACTCTAGTTA+AGG | + | chr6_2:71035419-71035438 | None:intergenic | 25.0% |
! | TATATCTGCTATCATTGAAA+TGG | + | chr6_2:71035468-71035487 | None:intergenic | 25.0% |
!!! | ACAAATTTTTTCTTTCATGG+AGG | - | chr6_2:71035613-71035632 | Msa0926970:intron | 25.0% |
! | AACAATACTAAATTGTGGTT+TGG | + | chr6_2:71036110-71036129 | None:intergenic | 25.0% |
! | GGTTTGAAAAATCAAAATTG+GGG | + | chr6_2:71036139-71036158 | None:intergenic | 25.0% |
! | GGGTTTGAAAAATCAAAATT+GGG | + | chr6_2:71036140-71036159 | None:intergenic | 25.0% |
! | AGGGTTTGAAAAATCAAAAT+TGG | + | chr6_2:71036141-71036160 | None:intergenic | 25.0% |
! | TACTTAATACTTATACGGTT+GGG | - | chr6_2:71036296-71036315 | Msa0926970:intron | 25.0% |
! | CCTATAAGGTAATACTTATA+CGG | - | chr6_2:71036504-71036523 | Msa0926970:intron | 25.0% |
!! | CCACTAAAATCATTTTCATT+GGG | + | chr6_2:71037045-71037064 | None:intergenic | 25.0% |
!! | TCCACTAAAATCATTTTCAT+TGG | + | chr6_2:71037046-71037065 | None:intergenic | 25.0% |
! | AATAGATATTGGACTTTCAA+TGG | - | chr6_2:71037071-71037090 | Msa0926970:intron | 25.0% |
!!! | ATTAAACAAGTTTCTAGAAC+AGG | - | chr6_2:71037180-71037199 | Msa0926970:CDS | 25.0% |
!!! | TTAAACAAGTTTCTAGAACA+GGG | - | chr6_2:71037181-71037200 | Msa0926970:CDS | 25.0% |
!! | TACATCGAATAAAGTACTTT+AGG | - | chr6_2:71037407-71037426 | Msa0926970:CDS | 25.0% |
! | TGAATTAAGTTCATGTAAAG+TGG | + | chr6_2:71037441-71037460 | None:intergenic | 25.0% |
GATATTAAGGACAAGAGTTT+AGG | - | chr6_2:71035332-71035351 | Msa0926970:CDS | 30.0% | |
GAAGTGAAATACATCATTGA+CGG | - | chr6_2:71035376-71035395 | Msa0926970:CDS | 30.0% | |
AAGTGAAATACATCATTGAC+GGG | - | chr6_2:71035377-71035396 | Msa0926970:CDS | 30.0% | |
! | ACTAGAGTATTTGATAGAGA+TGG | - | chr6_2:71035421-71035440 | Msa0926970:CDS | 30.0% |
!!! | AATTTTTTCTTTCATGGAGG+AGG | - | chr6_2:71035616-71035635 | Msa0926970:intron | 30.0% |
!!! | TTTTCTTTAAGGTGGGAAAT+AGG | + | chr6_2:71035794-71035813 | None:intergenic | 30.0% |
TTTCAGCTTGCATACAAAAA+GGG | - | chr6_2:71035885-71035904 | Msa0926970:intron | 30.0% | |
ATAACATAGAACAAACCTGA+AGG | + | chr6_2:71036006-71036025 | None:intergenic | 30.0% | |
!!! | GCTGCTTGTTATTTTGTTAA+TGG | - | chr6_2:71036056-71036075 | Msa0926970:intron | 30.0% |
TTATACTACTTATACGGTTG+TGG | - | chr6_2:71036240-71036259 | Msa0926970:intron | 30.0% | |
TATACTACTTATACGGTTGT+GGG | - | chr6_2:71036241-71036260 | Msa0926970:intron | 30.0% | |
TTTGGGTGATTTAGTATTGT+TGG | - | chr6_2:71036267-71036286 | Msa0926970:intron | 30.0% | |
CTACTTAATACTTATACGGT+TGG | - | chr6_2:71036295-71036314 | Msa0926970:intron | 30.0% | |
CCGTATAAGTATTACCTTAT+AGG | + | chr6_2:71036507-71036526 | None:intergenic | 30.0% | |
AATGTGAATCGATGTTTAGT+AGG | - | chr6_2:71036776-71036795 | Msa0926970:intron | 30.0% | |
! | CCCAATGAAAATGATTTTAG+TGG | - | chr6_2:71037042-71037061 | Msa0926970:intron | 30.0% |
ATATTATTTGTTTCAGCGGA+CGG | - | chr6_2:71037120-71037139 | Msa0926970:CDS | 30.0% | |
GATATTAAGGACAAGAGTTT+AGG | - | chr6_2:71035332-71035351 | Msa0926970:CDS | 30.0% | |
GAAGTGAAATACATCATTGA+CGG | - | chr6_2:71035376-71035395 | Msa0926970:CDS | 30.0% | |
AAGTGAAATACATCATTGAC+GGG | - | chr6_2:71035377-71035396 | Msa0926970:CDS | 30.0% | |
! | ACTAGAGTATTTGATAGAGA+TGG | - | chr6_2:71035421-71035440 | Msa0926970:CDS | 30.0% |
!!! | AATTTTTTCTTTCATGGAGG+AGG | - | chr6_2:71035616-71035635 | Msa0926970:intron | 30.0% |
!!! | TTTTCTTTAAGGTGGGAAAT+AGG | + | chr6_2:71035794-71035813 | None:intergenic | 30.0% |
TTTCAGCTTGCATACAAAAA+GGG | - | chr6_2:71035885-71035904 | Msa0926970:intron | 30.0% | |
ATAACATAGAACAAACCTGA+AGG | + | chr6_2:71036006-71036025 | None:intergenic | 30.0% | |
!!! | GCTGCTTGTTATTTTGTTAA+TGG | - | chr6_2:71036056-71036075 | Msa0926970:intron | 30.0% |
TTATACTACTTATACGGTTG+TGG | - | chr6_2:71036240-71036259 | Msa0926970:intron | 30.0% | |
TATACTACTTATACGGTTGT+GGG | - | chr6_2:71036241-71036260 | Msa0926970:intron | 30.0% | |
TTTGGGTGATTTAGTATTGT+TGG | - | chr6_2:71036267-71036286 | Msa0926970:intron | 30.0% | |
CTACTTAATACTTATACGGT+TGG | - | chr6_2:71036295-71036314 | Msa0926970:intron | 30.0% | |
CCGTATAAGTATTACCTTAT+AGG | + | chr6_2:71036507-71036526 | None:intergenic | 30.0% | |
AATGTGAATCGATGTTTAGT+AGG | - | chr6_2:71036776-71036795 | Msa0926970:intron | 30.0% | |
! | CCCAATGAAAATGATTTTAG+TGG | - | chr6_2:71037042-71037061 | Msa0926970:intron | 30.0% |
ATATTATTTGTTTCAGCGGA+CGG | - | chr6_2:71037120-71037139 | Msa0926970:CDS | 30.0% | |
GAATCCTTACAAAGTTACTG+TGG | - | chr6_2:71035682-71035701 | Msa0926970:intron | 35.0% | |
TTCAGCTTGCGTACAAAATT+AGG | - | chr6_2:71035844-71035863 | Msa0926970:intron | 35.0% | |
GTTTCAGCTTGCATACAAAA+AGG | - | chr6_2:71035884-71035903 | Msa0926970:intron | 35.0% | |
! | TTATACGGTTGTGGGATTTT+TGG | - | chr6_2:71036249-71036268 | Msa0926970:intron | 35.0% |
! | TATACGGTTGTGGGATTTTT+GGG | - | chr6_2:71036250-71036269 | Msa0926970:intron | 35.0% |
TGTATAAACTTGCAGAGATG+AGG | - | chr6_2:71036705-71036724 | Msa0926970:intron | 35.0% | |
TACGAAGCAATGTTGAAGAA+GGG | + | chr6_2:71037158-71037177 | None:intergenic | 35.0% | |
ATACGAAGCAATGTTGAAGA+AGG | + | chr6_2:71037159-71037178 | None:intergenic | 35.0% | |
!! | AAGTTTCTAGAACAGGGTAT+TGG | - | chr6_2:71037187-71037206 | Msa0926970:CDS | 35.0% |
GAATCCTTACAAAGTTACTG+TGG | - | chr6_2:71035682-71035701 | Msa0926970:intron | 35.0% | |
TTCAGCTTGCGTACAAAATT+AGG | - | chr6_2:71035844-71035863 | Msa0926970:intron | 35.0% | |
GTTTCAGCTTGCATACAAAA+AGG | - | chr6_2:71035884-71035903 | Msa0926970:intron | 35.0% | |
! | TTATACGGTTGTGGGATTTT+TGG | - | chr6_2:71036249-71036268 | Msa0926970:intron | 35.0% |
! | TATACGGTTGTGGGATTTTT+GGG | - | chr6_2:71036250-71036269 | Msa0926970:intron | 35.0% |
TGTATAAACTTGCAGAGATG+AGG | - | chr6_2:71036705-71036724 | Msa0926970:intron | 35.0% | |
TACGAAGCAATGTTGAAGAA+GGG | + | chr6_2:71037158-71037177 | None:intergenic | 35.0% | |
ATACGAAGCAATGTTGAAGA+AGG | + | chr6_2:71037159-71037178 | None:intergenic | 35.0% | |
!! | AAGTTTCTAGAACAGGGTAT+TGG | - | chr6_2:71037187-71037206 | Msa0926970:CDS | 35.0% |
GGACAAGAGTTTAGGAAAGA+CGG | - | chr6_2:71035340-71035359 | Msa0926970:CDS | 40.0% | |
AAAGAATCCGCGACTTTCAT+AGG | + | chr6_2:71035587-71035606 | None:intergenic | 40.0% | |
TGAAAGTCGCGGATTCTTTA+AGG | - | chr6_2:71035588-71035607 | Msa0926970:intron | 40.0% | |
! | TTTTCTTTCATGGAGGAGGA+AGG | - | chr6_2:71035620-71035639 | Msa0926970:intron | 40.0% |
TTTCTTTCATGGAGGAGGAA+GGG | - | chr6_2:71035621-71035640 | Msa0926970:intron | 40.0% | |
TGTGCCACAGTAACTTTGTA+AGG | + | chr6_2:71035689-71035708 | None:intergenic | 40.0% | |
TTACAAAGTTACTGTGGCAC+AGG | - | chr6_2:71035688-71035707 | Msa0926970:intron | 40.0% | |
TACAAAGTTACTGTGGCACA+GGG | - | chr6_2:71035689-71035708 | Msa0926970:intron | 40.0% | |
ATAGAACAAACCTGAAGGAG+AGG | + | chr6_2:71036001-71036020 | None:intergenic | 40.0% | |
GTGTGATTGAGTAGAGAGAA+TGG | - | chr6_2:71036181-71036200 | Msa0926970:intron | 40.0% | |
GTAGAGAGAATGGACACTTA+CGG | - | chr6_2:71036191-71036210 | Msa0926970:intron | 40.0% | |
GTTGTGTCATGTGTGCTAAT+TGG | - | chr6_2:71036601-71036620 | Msa0926970:intron | 40.0% | |
ATAAACTTGCAGAGATGAGG+AGG | - | chr6_2:71036708-71036727 | Msa0926970:intron | 40.0% | |
AGTAGGCTCTACAAAAATCC+TGG | - | chr6_2:71036793-71036812 | Msa0926970:intron | 40.0% | |
!! | TTCTAGAACAGGGTATTGGA+AGG | - | chr6_2:71037191-71037210 | Msa0926970:CDS | 40.0% |
!! | TCTAGAACAGGGTATTGGAA+GGG | - | chr6_2:71037192-71037211 | Msa0926970:CDS | 40.0% |
ATGAGCATGATTCTGACACT+GGG | - | chr6_2:71037229-71037248 | Msa0926970:CDS | 40.0% | |
GGACAAGAGTTTAGGAAAGA+CGG | - | chr6_2:71035340-71035359 | Msa0926970:CDS | 40.0% | |
AAAGAATCCGCGACTTTCAT+AGG | + | chr6_2:71035587-71035606 | None:intergenic | 40.0% | |
TGAAAGTCGCGGATTCTTTA+AGG | - | chr6_2:71035588-71035607 | Msa0926970:intron | 40.0% | |
! | TTTTCTTTCATGGAGGAGGA+AGG | - | chr6_2:71035620-71035639 | Msa0926970:intron | 40.0% |
TTTCTTTCATGGAGGAGGAA+GGG | - | chr6_2:71035621-71035640 | Msa0926970:intron | 40.0% | |
TGTGCCACAGTAACTTTGTA+AGG | + | chr6_2:71035689-71035708 | None:intergenic | 40.0% | |
TTACAAAGTTACTGTGGCAC+AGG | - | chr6_2:71035688-71035707 | Msa0926970:intron | 40.0% | |
TACAAAGTTACTGTGGCACA+GGG | - | chr6_2:71035689-71035708 | Msa0926970:intron | 40.0% | |
ATAGAACAAACCTGAAGGAG+AGG | + | chr6_2:71036001-71036020 | None:intergenic | 40.0% | |
GTGTGATTGAGTAGAGAGAA+TGG | - | chr6_2:71036181-71036200 | Msa0926970:intron | 40.0% | |
GTAGAGAGAATGGACACTTA+CGG | - | chr6_2:71036191-71036210 | Msa0926970:intron | 40.0% | |
GTTGTGTCATGTGTGCTAAT+TGG | - | chr6_2:71036601-71036620 | Msa0926970:intron | 40.0% | |
ATAAACTTGCAGAGATGAGG+AGG | - | chr6_2:71036708-71036727 | Msa0926970:intron | 40.0% | |
AGTAGGCTCTACAAAAATCC+TGG | - | chr6_2:71036793-71036812 | Msa0926970:intron | 40.0% | |
!! | TTCTAGAACAGGGTATTGGA+AGG | - | chr6_2:71037191-71037210 | Msa0926970:CDS | 40.0% |
!! | TCTAGAACAGGGTATTGGAA+GGG | - | chr6_2:71037192-71037211 | Msa0926970:CDS | 40.0% |
ATGAGCATGATTCTGACACT+GGG | - | chr6_2:71037229-71037248 | Msa0926970:CDS | 40.0% | |
GATAGAGATGGTAGCACTCA+AGG | - | chr6_2:71035433-71035452 | Msa0926970:CDS | 45.0% | |
AACGTGACCTATGAAAGTCG+CGG | - | chr6_2:71035577-71035596 | Msa0926970:intron | 45.0% | |
TTCTTTCATGGAGGAGGAAG+GGG | - | chr6_2:71035622-71035641 | Msa0926970:intron | 45.0% | |
GAACAGAATAGCATGCAGAG+AGG | - | chr6_2:71035656-71035675 | Msa0926970:intron | 45.0% | |
ACAAAGTTACTGTGGCACAG+GGG | - | chr6_2:71035690-71035709 | Msa0926970:intron | 45.0% | |
AAGGTGGGAAATAGGCTGAT+GGG | + | chr6_2:71035786-71035805 | None:intergenic | 45.0% | |
TAAGGTGGGAAATAGGCTGA+TGG | + | chr6_2:71035787-71035806 | None:intergenic | 45.0% | |
AACAAACCTGAAGGAGAGGA+AGG | + | chr6_2:71035997-71036016 | None:intergenic | 45.0% | |
AATGGACACTTACGGATGTG+TGG | - | chr6_2:71036199-71036218 | Msa0926970:intron | 45.0% | |
! | ACTTATACGGTTGGGTTGTG+TGG | - | chr6_2:71036304-71036323 | Msa0926970:intron | 45.0% |
! | TGCAGAGATGAGGAGGTTTT+TGG | - | chr6_2:71036715-71036734 | Msa0926970:intron | 45.0% |
TCGCGGTAAAAATTTAGCCC+AGG | - | chr6_2:71036968-71036987 | Msa0926970:intron | 45.0% | |
ATAATAGTGTGCCACAGCAG+TGG | + | chr6_2:71037016-71037035 | None:intergenic | 45.0% | |
CATGAGCATGATTCTGACAC+TGG | - | chr6_2:71037228-71037247 | Msa0926970:CDS | 45.0% | |
GATAGAGATGGTAGCACTCA+AGG | - | chr6_2:71035433-71035452 | Msa0926970:CDS | 45.0% | |
AACGTGACCTATGAAAGTCG+CGG | - | chr6_2:71035577-71035596 | Msa0926970:intron | 45.0% | |
TTCTTTCATGGAGGAGGAAG+GGG | - | chr6_2:71035622-71035641 | Msa0926970:intron | 45.0% | |
GAACAGAATAGCATGCAGAG+AGG | - | chr6_2:71035656-71035675 | Msa0926970:intron | 45.0% | |
ACAAAGTTACTGTGGCACAG+GGG | - | chr6_2:71035690-71035709 | Msa0926970:intron | 45.0% | |
AAGGTGGGAAATAGGCTGAT+GGG | + | chr6_2:71035786-71035805 | None:intergenic | 45.0% | |
TAAGGTGGGAAATAGGCTGA+TGG | + | chr6_2:71035787-71035806 | None:intergenic | 45.0% | |
AACAAACCTGAAGGAGAGGA+AGG | + | chr6_2:71035997-71036016 | None:intergenic | 45.0% | |
AATGGACACTTACGGATGTG+TGG | - | chr6_2:71036199-71036218 | Msa0926970:intron | 45.0% | |
! | ACTTATACGGTTGGGTTGTG+TGG | - | chr6_2:71036304-71036323 | Msa0926970:intron | 45.0% |
! | TGCAGAGATGAGGAGGTTTT+TGG | - | chr6_2:71036715-71036734 | Msa0926970:intron | 45.0% |
TCGCGGTAAAAATTTAGCCC+AGG | - | chr6_2:71036968-71036987 | Msa0926970:intron | 45.0% | |
ATAATAGTGTGCCACAGCAG+TGG | + | chr6_2:71037016-71037035 | None:intergenic | 45.0% | |
CATGAGCATGATTCTGACAC+TGG | - | chr6_2:71037228-71037247 | Msa0926970:CDS | 45.0% | |
!! | TATATATAAATAGTTATAAA+TGG | + | chr6_2:71036931-71036950 | None:intergenic | 5.0% |
!! | TATATATAAATAGTTATAAA+TGG | + | chr6_2:71036931-71036950 | None:intergenic | 5.0% |
!! | GGGAAATAGGCTGATGGGTT+GGG | + | chr6_2:71035781-71035800 | None:intergenic | 50.0% |
! | TGGGAAATAGGCTGATGGGT+TGG | + | chr6_2:71035782-71035801 | None:intergenic | 50.0% |
TGAAGGAGAGGAAGGTCAGA+AGG | + | chr6_2:71035989-71036008 | None:intergenic | 50.0% | |
TTCTGACCTTCCTCTCCTTC+AGG | - | chr6_2:71035988-71036007 | Msa0926970:intron | 50.0% | |
! | GGAAAGAGCACGCTATTGTC+AGG | - | chr6_2:71036840-71036859 | Msa0926970:intron | 50.0% |
!! | CCAGGAATTTTCGAGAGCCT+GGG | + | chr6_2:71036988-71037007 | None:intergenic | 50.0% |
!! | GTTGAAGAAGGGCGTTGAAC+AGG | + | chr6_2:71037147-71037166 | None:intergenic | 50.0% |
!! | GGGAAATAGGCTGATGGGTT+GGG | + | chr6_2:71035781-71035800 | None:intergenic | 50.0% |
! | TGGGAAATAGGCTGATGGGT+TGG | + | chr6_2:71035782-71035801 | None:intergenic | 50.0% |
TGAAGGAGAGGAAGGTCAGA+AGG | + | chr6_2:71035989-71036008 | None:intergenic | 50.0% | |
TTCTGACCTTCCTCTCCTTC+AGG | - | chr6_2:71035988-71036007 | Msa0926970:intron | 50.0% | |
! | GGAAAGAGCACGCTATTGTC+AGG | - | chr6_2:71036840-71036859 | Msa0926970:intron | 50.0% |
!! | CCAGGAATTTTCGAGAGCCT+GGG | + | chr6_2:71036988-71037007 | None:intergenic | 50.0% |
!! | GTTGAAGAAGGGCGTTGAAC+AGG | + | chr6_2:71037147-71037166 | None:intergenic | 50.0% |
AAGTTACTGTGGCACAGGGG+CGG | - | chr6_2:71035693-71035712 | Msa0926970:intron | 55.0% | |
ACAGAGAGCCAGCAGAGAGT+CGG | + | chr6_2:71035931-71035950 | None:intergenic | 55.0% | |
! | TTCCGCGACCTCTTTTGCAG+TGG | + | chr6_2:71036824-71036843 | None:intergenic | 55.0% |
CCCAGGCTCTCGAAAATTCC+TGG | - | chr6_2:71036985-71037004 | Msa0926970:intron | 55.0% | |
!! | GCCAGGAATTTTCGAGAGCC+TGG | + | chr6_2:71036989-71037008 | None:intergenic | 55.0% |
ATAGTGTGCCACAGCAGTGG+CGG | + | chr6_2:71037013-71037032 | None:intergenic | 55.0% | |
AAGTTACTGTGGCACAGGGG+CGG | - | chr6_2:71035693-71035712 | Msa0926970:intron | 55.0% | |
ACAGAGAGCCAGCAGAGAGT+CGG | + | chr6_2:71035931-71035950 | None:intergenic | 55.0% | |
! | TTCCGCGACCTCTTTTGCAG+TGG | + | chr6_2:71036824-71036843 | None:intergenic | 55.0% |
CCCAGGCTCTCGAAAATTCC+TGG | - | chr6_2:71036985-71037004 | Msa0926970:intron | 55.0% | |
!! | GCCAGGAATTTTCGAGAGCC+TGG | + | chr6_2:71036989-71037008 | None:intergenic | 55.0% |
ATAGTGTGCCACAGCAGTGG+CGG | + | chr6_2:71037013-71037032 | None:intergenic | 55.0% | |
GGAAAGCAGAAGCAGAGCCC+GGG | + | chr6_2:71035748-71035767 | None:intergenic | 60.0% | |
GGGAAAGCAGAAGCAGAGCC+CGG | + | chr6_2:71035749-71035768 | None:intergenic | 60.0% | |
!! | GATGGGTTGGGCTGATGGGT+GGG | + | chr6_2:71035769-71035788 | None:intergenic | 60.0% |
!! | TGATGGGTTGGGCTGATGGG+TGG | + | chr6_2:71035770-71035789 | None:intergenic | 60.0% |
!! | GGCTGATGGGTTGGGCTGAT+GGG | + | chr6_2:71035773-71035792 | None:intergenic | 60.0% |
!! | AGGCTGATGGGTTGGGCTGA+TGG | + | chr6_2:71035774-71035793 | None:intergenic | 60.0% |
CCAGCAGAGAGTCGGTCTGA+AGG | + | chr6_2:71035923-71035942 | None:intergenic | 60.0% | |
! | CCTTCAGACCGACTCTCTGC+TGG | - | chr6_2:71035920-71035939 | Msa0926970:intron | 60.0% |
!! | TCTTTTGCAGTGGCGGAGCC+AGG | + | chr6_2:71036814-71036833 | None:intergenic | 60.0% |
TGGCTCCGCCACTGCAAAAG+AGG | - | chr6_2:71036813-71036832 | Msa0926970:intron | 60.0% | |
! | CGCGACCTCTTTTGCAGTGG+CGG | + | chr6_2:71036821-71036840 | None:intergenic | 60.0% |
CGCCACTGCAAAAGAGGTCG+CGG | - | chr6_2:71036819-71036838 | Msa0926970:intron | 60.0% | |
GGAAAGCAGAAGCAGAGCCC+GGG | + | chr6_2:71035748-71035767 | None:intergenic | 60.0% | |
GGGAAAGCAGAAGCAGAGCC+CGG | + | chr6_2:71035749-71035768 | None:intergenic | 60.0% | |
!! | GATGGGTTGGGCTGATGGGT+GGG | + | chr6_2:71035769-71035788 | None:intergenic | 60.0% |
!! | TGATGGGTTGGGCTGATGGG+TGG | + | chr6_2:71035770-71035789 | None:intergenic | 60.0% |
!! | GGCTGATGGGTTGGGCTGAT+GGG | + | chr6_2:71035773-71035792 | None:intergenic | 60.0% |
!! | AGGCTGATGGGTTGGGCTGA+TGG | + | chr6_2:71035774-71035793 | None:intergenic | 60.0% |
CCAGCAGAGAGTCGGTCTGA+AGG | + | chr6_2:71035923-71035942 | None:intergenic | 60.0% | |
! | CCTTCAGACCGACTCTCTGC+TGG | - | chr6_2:71035920-71035939 | Msa0926970:intron | 60.0% |
!! | TCTTTTGCAGTGGCGGAGCC+AGG | + | chr6_2:71036814-71036833 | None:intergenic | 60.0% |
TGGCTCCGCCACTGCAAAAG+AGG | - | chr6_2:71036813-71036832 | Msa0926970:intron | 60.0% | |
! | CGCGACCTCTTTTGCAGTGG+CGG | + | chr6_2:71036821-71036840 | None:intergenic | 60.0% |
CGCCACTGCAAAAGAGGTCG+CGG | - | chr6_2:71036819-71036838 | Msa0926970:intron | 60.0% | |
! | TTCCACCCCCCAGCTAGCCT+GGG | - | chr6_2:71035716-71035735 | Msa0926970:intron | 65.0% |
! | TAGTGCCCAGGCTAGCTGGG+GGG | + | chr6_2:71035724-71035743 | None:intergenic | 65.0% |
! | CTAGTGCCCAGGCTAGCTGG+GGG | + | chr6_2:71035725-71035744 | None:intergenic | 65.0% |
! | GCTAGTGCCCAGGCTAGCTG+GGG | + | chr6_2:71035726-71035745 | None:intergenic | 65.0% |
! | GGCTAGTGCCCAGGCTAGCT+GGG | + | chr6_2:71035727-71035746 | None:intergenic | 65.0% |
! | AGCTAGCCTGGGCACTAGCC+CGG | - | chr6_2:71035727-71035746 | Msa0926970:intron | 65.0% |
! | TTCCACCCCCCAGCTAGCCT+GGG | - | chr6_2:71035716-71035735 | Msa0926970:intron | 65.0% |
! | TAGTGCCCAGGCTAGCTGGG+GGG | + | chr6_2:71035724-71035743 | None:intergenic | 65.0% |
! | CTAGTGCCCAGGCTAGCTGG+GGG | + | chr6_2:71035725-71035744 | None:intergenic | 65.0% |
! | GCTAGTGCCCAGGCTAGCTG+GGG | + | chr6_2:71035726-71035745 | None:intergenic | 65.0% |
! | GGCTAGTGCCCAGGCTAGCT+GGG | + | chr6_2:71035727-71035746 | None:intergenic | 65.0% |
! | AGCTAGCCTGGGCACTAGCC+CGG | - | chr6_2:71035727-71035746 | Msa0926970:intron | 65.0% |
GTTCCACCCCCCAGCTAGCC+TGG | - | chr6_2:71035715-71035734 | Msa0926970:intron | 70.0% | |
! | GGGCTAGTGCCCAGGCTAGC+TGG | + | chr6_2:71035728-71035747 | None:intergenic | 70.0% |
! | GCTAGCCTGGGCACTAGCCC+GGG | - | chr6_2:71035728-71035747 | Msa0926970:intron | 70.0% |
TCCTGGCTCCGCCACTGCTG+TGG | - | chr6_2:71037002-71037021 | Msa0926970:intron | 70.0% | |
GTTCCACCCCCCAGCTAGCC+TGG | - | chr6_2:71035715-71035734 | Msa0926970:intron | 70.0% | |
! | GGGCTAGTGCCCAGGCTAGC+TGG | + | chr6_2:71035728-71035747 | None:intergenic | 70.0% |
! | GCTAGCCTGGGCACTAGCCC+GGG | - | chr6_2:71035728-71035747 | Msa0926970:intron | 70.0% |
TCCTGGCTCCGCCACTGCTG+TGG | - | chr6_2:71037002-71037021 | Msa0926970:intron | 70.0% | |
! | TGCCCAGGCTAGCTGGGGGG+TGG | + | chr6_2:71035721-71035740 | None:intergenic | 75.0% |
!! | CAGAGCCCGGGCTAGTGCCC+AGG | + | chr6_2:71035736-71035755 | None:intergenic | 75.0% |
! | GCCACAGCAGTGGCGGAGCC+AGG | + | chr6_2:71037006-71037025 | None:intergenic | 75.0% |
! | TGCCCAGGCTAGCTGGGGGG+TGG | + | chr6_2:71035721-71035740 | None:intergenic | 75.0% |
!! | CAGAGCCCGGGCTAGTGCCC+AGG | + | chr6_2:71035736-71035755 | None:intergenic | 75.0% |
! | GCCACAGCAGTGGCGGAGCC+AGG | + | chr6_2:71037006-71037025 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 71035260 | 71037462 | 71035260 | ID=Msa0926970;Name=Msa0926970 |
chr6_2 | mRNA | 71035260 | 71037462 | 71035260 | ID=Msa0926970-mRNA-1;Parent=Msa0926970;Name=Msa0926970-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0.33|1|0.5|0.66|3|34|209 |
chr6_2 | exon | 71035260 | 71035586 | 71035260 | ID=Msa0926970-mRNA-1:exon:11749;Parent=Msa0926970-mRNA-1 |
chr6_2 | exon | 71037079 | 71037296 | 71037079 | ID=Msa0926970-mRNA-1:exon:11748;Parent=Msa0926970-mRNA-1 |
chr6_2 | exon | 71037344 | 71037462 | 71037344 | ID=Msa0926970-mRNA-1:exon:11747;Parent=Msa0926970-mRNA-1 |
chr6_2 | CDS | 71037344 | 71037462 | 71037344 | ID=Msa0926970-mRNA-1:cds;Parent=Msa0926970-mRNA-1 |
chr6_2 | CDS | 71037079 | 71037296 | 71037079 | ID=Msa0926970-mRNA-1:cds;Parent=Msa0926970-mRNA-1 |
chr6_2 | CDS | 71035294 | 71035586 | 71035294 | ID=Msa0926970-mRNA-1:cds;Parent=Msa0926970-mRNA-1 |
chr6_2 | three_prime_UTR | 71035260 | 71035293 | 71035260 | ID=Msa0926970-mRNA-1:three_prime_utr;Parent=Msa0926970-mRNA-1 |
Gene Sequence |
Protein sequence |