AlfalfaGEDB | Msa0932170

M. sativa cultivar zhongmu-4 / Msa0932170

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0932170	KEH24745.1	97.436	78	2	0	4	81	2	79	1.73e-49	160

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0932170	sp\|Q58FS3\|RAD_ANTMA	61.111	72	28	0	3	74	2	73	8.53e-31	106

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0932170	TF	MYB-related

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0932120	Msa0932170	0.866850	2.108575e-65	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0932170	MtrunA17_Chr6g0449111	97.436	78	2	0	4	81	2	79	1.59e-53	160
Msa0932170	MtrunA17_Chr7g0255841	75.410	61	15	0	14	74	14	74	3.94e-32	107
Msa0932170	MtrunA17_Chr3g0081631	64.865	74	25	1	4	76	2	75	1.49e-31	105
Msa0932170	MtrunA17_Chr1g0155181	57.143	70	30	0	7	76	2	71	8.69e-28	95.9
Msa0932170	MtrunA17_Chr3g0144631	56.410	78	30	1	1	74	1	78	1.06e-26	93.2
Msa0932170	MtrunA17_Chr5g0404101	56.338	71	31	0	4	74	11	81	1.25e-25	90.9
Msa0932170	MtrunA17_Chr8g0373111	57.576	66	27	1	9	74	2	66	2.63e-25	89.4
Msa0932170	MtrunA17_Chr8g0373121	57.576	66	27	1	9	74	2	66	2.63e-25	89.4
Msa0932170	MtrunA17_Chr8g0373131	57.576	66	27	1	9	74	2	66	2.76e-25	89.4
Msa0932170	MtrunA17_Chr3g0141601	54.286	70	32	0	7	76	2	71	6.75e-25	89.0

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0932170	AT1G75250.2	60.811	74	29	1	74	1	74	3.03e-30	102
Msa0932170	AT1G75250.1	60.811	74	29	1	74	1	74	9.09e-30	102
Msa0932170	AT2G21650.1	66.667	63	21	12	74	14	76	1.21e-29	101
Msa0932170	AT4G39250.1	68.254	63	20	12	74	14	76	1.24e-29	101
Msa0932170	AT1G19510.1	62.069	58	22	17	74	17	74	6.12e-23	84.3
Msa0932170	AT2G18328.1	59.016	61	25	16	76	15	75	1.04e-22	83.2
Msa0932170	AT5G08520.1	47.436	78	41	1	78	1	78	6.21e-19	78.6
Msa0932170	AT5G05790.2	50.000	66	33	9	74	28	93	1.54e-17	74.3
Msa0932170	AT5G05790.1	50.000	66	33	9	74	28	93	1.54e-17	74.3
Msa0932170	AT5G58900.1	46.479	71	38	4	74	26	96	5.88e-17	73.2

Showing 1 to 10 of 17 entries

Previous1 2Next

Find 25 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATATTGCTAAGGTTGTTGG+TGG	0.514753	6_3:-165268	Msa0932170:CDS
ACAAAGACACACCTGAACGT+TGG	0.679810	6_3:-165294	Msa0932170:CDS
ACGTTGGTACAATATTGCTA+AGG	0.612999	6_3:-165278	Msa0932170:CDS
AGGGTTGGTGTAGGAAGGAA+AGG	0.512474	6_3:+165168	None:intergenic
ATGAATTAAGTGGGATGTTT+AGG	0.212233	6_3:+165148	None:intergenic
ATTCAATAAGGTGAATGTCT+TGG	0.499836	6_3:+165203	None:intergenic
ATTCCATGTAGTACTGGAAC+TGG	0.418503	6_3:+165360	None:intergenic
CATCCAGTTCCAGTACTACA+TGG	0.515242	6_3:-165363	Msa0932170:CDS
CTTGGAGAAGGAGTTGATAA+TGG	0.437914	6_3:+165221	None:intergenic
GAACTTGGCCTGATTCAATA+AGG	0.435223	6_3:+165191	None:intergenic

Showing 1 to 10 of 25 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TACAATATTGCTAAGGTTGT+TGG	-	chr6_3:165258-165277	Msa0932170:CDS	30.0%
ATTCAATAAGGTGAATGTCT+TGG	+	chr6_3:165329-165348	None:intergenic	30.0%
TTCAACATTCCATGTAGTAC+TGG	+	chr6_3:165178-165197	None:intergenic	35.0%
ACGTTGGTACAATATTGCTA+AGG	-	chr6_3:165251-165270	Msa0932170:CDS	35.0%
AATATTGCTAAGGTTGTTGG+TGG	-	chr6_3:165261-165280	Msa0932170:CDS	35.0%
GACATTCACCTTATTGAATC+AGG	-	chr6_3:165330-165349	Msa0932170:CDS	35.0%
GCAATATTGTACCAACGTTC+AGG	+	chr6_3:165249-165268	None:intergenic	40.0%
TAAGGTGAATGTCTTGGAGA+AGG	+	chr6_3:165323-165342	None:intergenic	40.0%
GAACTTGGCCTGATTCAATA+AGG	+	chr6_3:165341-165360	None:intergenic	40.0%
CATCCAGTTCCAGTACTACA+TGG	-	chr6_3:165166-165185	Msa0932170:CDS	45.0%

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	165153	165398	165153	ID=Msa0932170;Name=Msa0932170
chr6_3	mRNA	165153	165398	165153	ID=Msa0932170-mRNA-1;Parent=Msa0932170;Name=Msa0932170-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|81
chr6_3	exon	165153	165398	165153	ID=Msa0932170-mRNA-1:exon:113;Parent=Msa0932170-mRNA-1
chr6_3	CDS	165153	165398	165153	ID=Msa0932170-mRNA-1:cds;Parent=Msa0932170-mRNA-1

Gene Sequence	>Msa0932170 ATGTCTTCTTCCTCATCCAGTTCCAGTACTACATGGAATGTTGAAGACAATAAAGCTTTTGAAAGAGCTCTAGCAGTTTATGACAAAGACACACCTGAACGTTGGTACAATATTGCTAAGGTTGTTGGTGGAAAAACTCCTGAACAAGTCAAGAGCCATTATCAACTCCTTCTCCAAGACATTCACCTTATTGAATCAGGCCAAGTTCCCTTTCCTTCCTACACCAACCCTAAACATCCCACTTAA
Protein sequence	>Msa0932170 MSSSSSSSSTTWNVEDNKAFERALAVYDKDTPERWYNIAKVVGGKTPEQVKSHYQLLLQDIHLIESGQVPFPSYTNPKHPT*