AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0935360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0935360 MtrunA17_Chr6g0451161 97.899 238 3 2 1 237 18 254 1.17e-169 473
Msa0935360 MtrunA17_Chr5g0413841 67.172 198 57 3 6 198 5 199 8.46e-79 241
Msa0935360 MtrunA17_Chr8g0364881 69.872 156 47 0 53 208 5 160 1.76e-76 234
Msa0935360 MtrunA17_Chr4g0059281 50.237 211 75 5 21 229 19 201 4.69e-65 204
Msa0935360 MtrunA17_Chr4g0073141 64.539 141 41 2 48 187 57 189 9.21e-52 175
Msa0935360 MtrunA17_Chr5g0411081 38.462 143 88 0 45 187 51 193 5.20e-29 112
Msa0935360 MtrunA17_Chr4g0030831 38.217 157 80 4 56 199 17 169 5.19e-25 97.4
Msa0935360 MtrunA17_Chr5g0426781 35.065 154 92 2 49 195 55 207 1.07e-24 100
Msa0935360 MtrunA17_Chr8g0366561 36.129 155 89 2 41 193 47 193 3.78e-24 99.0
Msa0935360 MtrunA17_Chr3g0133001 37.681 138 82 1 47 184 65 198 4.68e-24 99.4
Msa0935360 MtrunA17_Chr4g0050041 31.928 166 96 3 40 194 45 204 3.16e-22 94.0
Msa0935360 MtrunA17_Chr2g0279431 35.032 157 82 3 48 190 59 209 4.05e-22 94.0
Msa0935360 MtrunA17_Chr8g0381731 54.286 70 32 0 116 185 148 217 4.95e-22 92.4
Msa0935360 MtrunA17_Chr8g0336881 37.762 143 76 3 48 187 18 150 6.38e-22 92.4
Msa0935360 MtrunA17_Chr1g0191601 33.333 144 77 3 48 187 44 172 1.06e-21 92.4
Msa0935360 MtrunA17_Chr5g0427431 48.052 77 40 0 108 184 126 202 1.37e-21 92.8
Msa0935360 MtrunA17_Chr6g0486651 32.432 148 85 3 39 184 27 161 3.04e-21 91.3
Msa0935360 MtrunA17_Chr7g0273051 31.515 165 91 5 28 187 18 165 1.40e-20 89.4
Msa0935360 MtrunA17_Chr1g0184171 38.889 144 75 5 54 190 41 178 2.11e-20 88.6
Msa0935360 MtrunA17_Chr3g0126931 33.113 151 73 3 116 243 101 246 3.17e-20 88.2
Msa0935360 MtrunA17_Chr1g0186661 52.564 78 31 2 116 187 99 176 1.10e-19 86.7
Msa0935360 MtrunA17_Chr8g0345361 33.951 162 94 5 29 184 5 159 1.21e-19 85.1
Msa0935360 MtrunA17_Chr3g0132491 31.469 143 80 3 48 187 54 181 2.43e-19 85.9
Msa0935360 MtrunA17_Chr5g0426871 31.111 180 105 3 38 207 39 209 2.45e-19 85.9
Msa0935360 MtrunA17_Chr4g0067591 48.649 74 36 1 116 189 80 151 8.14e-19 83.2
Msa0935360 MtrunA17_Chr3g0118061 38.043 92 55 1 103 192 63 154 1.49e-18 81.3
Msa0935360 MtrunA17_Chr5g0426881 30.380 158 93 4 34 187 44 188 2.33e-18 83.2
Msa0935360 MtrunA17_Chr7g0246761 41.772 79 45 1 107 184 54 132 2.43e-18 80.1
Msa0935360 MtrunA17_Chr3g0118071 36.957 92 56 1 103 192 63 154 2.44e-18 80.9
Msa0935360 MtrunA17_Chr7g0244851 42.045 88 49 2 107 193 72 158 3.90e-18 79.3
Msa0935360 MtrunA17_Chr1g0167811 29.861 144 86 3 51 187 33 168 4.96e-18 81.6
Msa0935360 MtrunA17_Chr3g0128771 31.579 171 85 6 29 187 14 164 4.99e-18 79.0
Msa0935360 MtrunA17_Chr7g0274741 43.750 80 42 1 116 192 70 149 7.49e-18 78.6
Msa0935360 MtrunA17_Chr2g0301871 54.545 66 27 1 125 187 63 128 9.97e-18 80.5
Msa0935360 MtrunA17_Chr6g0451051 43.836 73 41 0 117 189 41 113 1.21e-17 77.4
Msa0935360 MtrunA17_Chr6g0470751 29.114 158 92 3 40 194 38 178 1.26e-17 80.5
Msa0935360 MtrunA17_Chr3g0123641 35.172 145 76 4 58 198 1 131 1.58e-17 79.0
Msa0935360 MtrunA17_Chr3g0113811 31.293 147 83 3 48 190 22 154 1.67e-17 77.4
Msa0935360 MtrunA17_Chr8g0350741 43.902 82 35 2 113 188 59 135 1.84e-17 77.4
Msa0935360 MtrunA17_Chr3g0123631 30.392 204 101 6 58 236 1 188 1.86e-17 77.8
Msa0935360 MtrunA17_Chr4g0013561 38.776 98 47 2 90 187 71 155 2.50e-17 78.2
Msa0935360 MtrunA17_Chr7g0274711 46.667 75 37 1 116 187 67 141 3.68e-17 76.6
Msa0935360 MtrunA17_Chr1g0203541 40.000 80 43 1 114 188 103 182 4.42e-17 77.0
Msa0935360 MtrunA17_Chr1g0184631 46.667 75 37 1 116 187 68 142 8.48e-17 75.9
Msa0935360 MtrunA17_Chr2g0325141 33.566 143 81 5 53 188 2 137 1.21e-16 74.3
Msa0935360 MtrunA17_Chr5g0407431 29.091 165 87 3 29 187 10 150 1.22e-16 76.3
Msa0935360 MtrunA17_Chr7g0261091 43.038 79 41 1 116 190 70 148 1.43e-16 77.8
Msa0935360 MtrunA17_Chr8g0388201 40.816 98 48 2 98 185 293 390 1.79e-16 77.8
Msa0935360 MtrunA17_Chr7g0276591 33.557 149 77 5 44 187 15 146 1.91e-16 77.0
Msa0935360 MtrunA17_Chr2g0325161 40.230 87 46 1 108 188 83 169 1.95e-16 75.9
Msa0935360 MtrunA17_Chr4g0027761 43.421 76 40 2 116 191 100 172 3.07e-16 74.7
Msa0935360 MtrunA17_Chr1g0198201 41.892 74 42 1 116 188 61 134 3.24e-16 75.1
Msa0935360 MtrunA17_Chr2g0327791 46.667 75 38 1 112 184 103 177 3.89e-16 74.7
Msa0935360 MtrunA17_Chr7g0248831 40.000 75 39 2 116 186 80 152 6.18e-16 73.6
Msa0935360 MtrunA17_Chr3g0143301 40.476 84 47 1 114 197 46 126 7.79e-16 71.6
Msa0935360 MtrunA17_Chr2g0307411 34.328 134 69 4 57 190 34 148 8.01e-16 73.6
Msa0935360 MtrunA17_Chr8g0348151 40.845 71 40 1 116 186 90 158 8.30e-16 73.6
Msa0935360 MtrunA17_Chr7g0274721 47.143 70 36 1 116 185 68 136 1.24e-15 72.4
Msa0935360 MtrunA17_Chr8g0370171 39.744 78 37 2 114 185 68 141 1.51e-15 72.8
Msa0935360 MtrunA17_Chr8g0347461 52.778 72 31 2 119 187 114 185 2.08e-15 73.9
Msa0935360 MtrunA17_Chr2g0297011 41.026 78 46 0 113 190 73 150 2.39e-15 71.2
Msa0935360 MtrunA17_Chr7g0248841 38.158 76 43 2 116 187 74 149 3.25e-15 70.9
Msa0935360 MtrunA17_Chr3g0105441 32.231 121 63 2 113 229 99 204 3.68e-15 72.8
Msa0935360 MtrunA17_Chr2g0295571 31.618 136 86 2 56 188 34 165 3.73e-15 73.2
Msa0935360 MtrunA17_Chr3g0144241 44.595 74 40 1 114 187 77 149 6.06e-15 70.9
Msa0935360 MtrunA17_Chr5g0409201 27.857 140 80 3 52 186 14 137 7.45e-15 70.1
Msa0935360 MtrunA17_Chr5g0433861 41.026 78 42 1 116 189 76 153 1.24e-14 72.0
Msa0935360 MtrunA17_Chr3g0129671 59.574 47 19 0 141 187 135 181 1.90e-14 70.5
Msa0935360 MtrunA17_Chr8g0383901 28.916 166 93 3 25 187 33 176 2.48e-14 69.7
Msa0935360 MtrunA17_Chr8g0383931 57.447 47 20 0 141 187 140 186 2.63e-14 70.1
Msa0935360 MtrunA17_Chr8g0383861 38.462 78 47 1 111 187 108 185 2.81e-14 69.7
Msa0935360 MtrunA17_Chr5g0396601 32.824 131 80 2 57 185 269 393 2.95e-14 71.6
Msa0935360 MtrunA17_Chr7g0274731 61.364 44 17 0 142 185 114 157 3.34e-14 68.9
Msa0935360 MtrunA17_Chr3g0117821 30.769 130 81 2 57 184 5 127 4.23e-14 67.8
Msa0935360 MtrunA17_Chr8g0383871 25.595 168 112 2 21 187 29 184 4.44e-14 69.3
Msa0935360 MtrunA17_Chr4g0052671 41.026 78 44 1 114 189 76 153 4.51e-14 67.8
Msa0935360 MtrunA17_Chr8g0383881 38.667 75 45 1 114 187 101 175 4.75e-14 68.9
Msa0935360 MtrunA17_Chr3g0081611 30.882 136 83 4 56 186 23 152 5.22e-14 68.2
Msa0935360 MtrunA17_Chr3g0120011 45.455 77 41 1 121 197 99 174 5.63e-14 68.9
Msa0935360 MtrunA17_Chr5g0409211 27.465 142 86 3 49 186 10 138 6.04e-14 67.8
Msa0935360 MtrunA17_Chr8g0383921 38.667 75 45 1 114 187 109 183 7.40e-14 68.6
Msa0935360 MtrunA17_Chr5g0396611 31.461 178 88 5 10 185 238 383 9.64e-14 70.1
Msa0935360 MtrunA17_Chr6g0451031 52.000 50 24 0 141 190 68 117 1.64e-13 65.5
Msa0935360 MtrunA17_Chr5g0396591 43.056 72 39 1 116 185 212 283 3.86e-13 67.4
Msa0935360 MtrunA17_Chr5g0444161 40.000 75 43 1 112 184 153 227 4.11e-13 66.6
Msa0935360 MtrunA17_Chr8g0388231 41.860 86 46 2 116 199 309 392 4.55e-13 68.2
Msa0935360 MtrunA17_Chr5g0437361 36.364 77 47 1 116 190 75 151 4.77e-13 65.5
Msa0935360 MtrunA17_Chr7g0269491 41.892 74 41 1 117 188 67 140 5.64e-13 65.9
Msa0935360 MtrunA17_Chr8g0383941 36.000 75 47 1 114 187 105 179 5.65e-13 66.2
Msa0935360 MtrunA17_Chr6g0451041 50.847 59 26 2 127 184 4 60 6.32e-13 63.2
Msa0935360 MtrunA17_Chr8g0387291 49.206 63 29 2 123 184 69 129 7.35e-13 64.7
Msa0935360 MtrunA17_Chr8g0369571 56.818 44 19 0 142 185 90 133 8.33e-13 65.1
Msa0935360 MtrunA17_Chr5g0430781 38.889 72 41 1 116 187 87 155 9.88e-13 65.5
Msa0935360 MtrunA17_Chr7g0275601 40.260 77 40 2 116 186 76 152 1.01e-12 64.3
Msa0935360 MtrunA17_Chr8g0345381 41.509 53 31 0 142 194 53 105 1.43e-12 63.5
Msa0935360 MtrunA17_Chr8g0366521 38.158 76 43 1 116 187 76 151 1.61e-12 65.9
Msa0935360 MtrunA17_Chr1g0157091 37.975 79 46 1 114 192 46 121 1.75e-12 62.8
Msa0935360 MtrunA17_Chr3g0126611 29.814 161 96 4 29 184 225 373 2.37e-12 65.9
Msa0935360 MtrunA17_Chr3g0118101 32.323 99 64 2 93 190 66 162 3.50e-12 63.2
Msa0935360 MtrunA17_Chr8g0371291 29.032 124 81 3 62 184 105 222 3.77e-12 63.9
Msa0935360 MtrunA17_Chr4g0010171 29.940 167 92 7 41 202 30 176 3.94e-12 63.2
Msa0935360 MtrunA17_Chr8g0348551 39.241 79 42 2 125 202 75 148 4.27e-12 62.8
Msa0935360 MtrunA17_Chr5g0406031 31.783 129 77 4 62 184 108 231 5.39e-12 63.5
Msa0935360 MtrunA17_Chr5g0444141 39.437 71 41 1 116 184 192 262 6.84e-12 63.9
Msa0935360 MtrunA17_Chr4g0065171 35.616 73 42 3 119 187 458 529 8.45e-12 64.3
Msa0935360 MtrunA17_Chr1g0150571 26.241 141 92 3 67 196 147 286 9.15e-12 63.9
Msa0935360 MtrunA17_Chr1g0177041 40.789 76 38 3 114 184 72 145 1.11e-11 61.6
Msa0935360 MtrunA17_Chr5g0408871 41.176 68 37 3 122 187 484 550 1.20e-11 63.9
Msa0935360 MtrunA17_Chr8g0347101 39.189 74 43 1 115 186 285 358 1.33e-11 63.5
Msa0935360 MtrunA17_Chr5g0416381 38.272 81 47 3 109 188 82 160 1.44e-11 61.6
Msa0935360 MtrunA17_Chr8g0345401 40.385 52 31 0 142 193 49 100 1.48e-11 60.8
Msa0935360 MtrunA17_Chr3g0118091 36.842 76 47 1 116 190 40 115 3.08e-11 59.3
Msa0935360 MtrunA17_Chr4g0073131 35.965 114 69 4 107 218 68 179 3.89e-11 60.5
Msa0935360 MtrunA17_Chr8g0369691 28.571 147 78 4 42 187 370 490 4.21e-11 62.4
Msa0935360 MtrunA17_Chr5g0416351 37.037 81 48 3 109 188 43 121 4.30e-11 59.7
Msa0935360 MtrunA17_Chr4g0039541 42.029 69 28 3 137 202 53 112 4.50e-11 58.9
Msa0935360 MtrunA17_Chr5g0397351 53.191 47 21 1 142 187 81 127 5.44e-11 58.9
Msa0935360 MtrunA17_Chr3g0104301 40.789 76 39 3 137 207 53 127 6.21e-11 58.9
Msa0935360 MtrunA17_Chr3g0104321 40.789 76 39 3 137 207 53 127 6.21e-11 58.9
Msa0935360 MtrunA17_Chr0c01g0489441 52.000 50 20 2 141 187 73 121 7.23e-11 58.9
Msa0935360 MtrunA17_Chr7g0248101 36.585 82 43 2 112 184 52 133 7.50e-11 59.7
Msa0935360 MtrunA17_Chr3g0118111 41.538 65 36 1 141 203 112 176 7.86e-11 59.7
Msa0935360 MtrunA17_Chr5g0416361 37.037 81 48 3 109 188 25 103 8.23e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0935360 AT5G40250.1 64.730 241 59 7 9 237 8 234 2.02e-95 285
Msa0935360 AT1G23980.1 68.790 157 47 1 46 200 46 202 3.44e-70 220
Msa0935360 AT2G18650.1 59.868 152 52 4 43 193 33 176 4.92e-47 161
Msa0935360 AT5G57750.1 54.745 137 57 3 49 184 32 164 2.99e-45 151
Msa0935360 AT4G30400.1 70.297 101 26 2 85 184 79 176 8.25e-44 154
Msa0935360 AT3G48030.2 49.704 169 78 3 24 191 16 178 1.43e-42 145
Msa0935360 AT3G48030.1 50.000 168 77 3 24 190 94 255 3.74e-42 147
Msa0935360 AT4G40070.1 35.503 169 81 6 47 211 40 184 7.88e-25 100
Msa0935360 AT3G03550.1 36.184 152 81 3 51 189 58 206 7.07e-24 98.6
Msa0935360 AT5G17600.1 37.121 132 77 2 53 184 59 184 1.09e-23 98.2
Msa0935360 AT1G72200.1 32.680 153 89 2 38 187 48 189 1.43e-23 98.6
Msa0935360 AT1G72220.1 36.129 155 87 4 41 187 72 222 1.78e-23 98.2
Msa0935360 AT1G35330.1 33.117 154 88 3 51 201 47 188 6.51e-23 95.5
Msa0935360 AT5G05810.1 53.521 71 33 0 114 184 118 188 1.25e-22 95.9
Msa0935360 AT2G20030.1 35.252 139 80 2 51 187 39 169 1.96e-22 95.1
Msa0935360 AT4G09110.1 42.574 101 53 3 107 202 84 184 1.22e-21 91.7
Msa0935360 AT4G28890.1 44.554 101 46 2 115 207 96 194 1.34e-21 93.2
Msa0935360 AT2G35000.1 36.429 140 77 3 56 190 51 183 3.94e-21 91.3
Msa0935360 AT1G22500.1 34.028 144 79 3 47 187 33 163 7.41e-21 90.5
Msa0935360 AT2G47560.1 51.282 78 36 1 113 188 77 154 1.18e-20 87.4
Msa0935360 AT4G33565.1 48.101 79 41 0 109 187 184 262 1.42e-20 89.7
Msa0935360 AT5G10380.1 54.286 70 32 0 116 185 109 178 2.09e-20 88.2
Msa0935360 AT2G34990.2 32.919 161 93 4 31 187 14 163 3.56e-20 88.2
Msa0935360 AT2G34990.1 34.722 144 79 4 48 187 9 141 4.39e-20 87.4
Msa0935360 AT4G09130.1 42.857 91 48 2 116 202 91 181 5.39e-20 87.8
Msa0935360 AT3G60220.1 37.037 135 68 5 120 244 92 219 7.42e-20 87.4
Msa0935360 AT4G17905.1 31.579 152 92 3 44 187 53 200 1.54e-19 86.3
Msa0935360 AT5G43420.1 43.182 88 36 1 111 184 93 180 1.63e-19 86.7
Msa0935360 AT4G17905.2 31.579 152 92 3 44 187 79 226 2.72e-19 85.9
Msa0935360 AT1G04360.1 47.619 84 37 2 111 187 96 179 3.07e-19 86.3
Msa0935360 AT3G16720.1 50.000 74 36 1 116 189 94 166 5.13e-19 84.7
Msa0935360 AT3G05200.1 32.258 155 84 5 48 195 44 184 7.21e-19 85.1
Msa0935360 AT1G53820.1 46.053 76 40 1 112 187 91 165 7.45e-19 84.3
Msa0935360 AT1G76410.1 33.333 153 86 3 36 187 12 149 9.66e-19 81.6
Msa0935360 AT5G46650.1 33.758 157 96 5 39 191 12 164 1.25e-18 83.2
Msa0935360 AT4G09120.1 46.667 75 37 1 116 187 94 168 1.27e-18 84.0
Msa0935360 AT2G42350.1 42.553 94 42 3 116 201 75 164 5.26e-18 80.1
Msa0935360 AT2G35420.1 34.146 164 85 5 30 187 2 148 6.61e-18 80.9
Msa0935360 AT4G15975.1 30.534 131 77 3 116 235 51 178 2.09e-17 79.0
Msa0935360 AT2G42360.1 31.544 149 87 3 41 188 20 154 3.57e-17 78.2
Msa0935360 AT1G20823.1 46.667 75 39 1 114 187 82 156 3.90e-17 77.4
Msa0935360 AT3G18930.2 45.122 82 35 1 116 187 120 201 4.69e-17 80.1
Msa0935360 AT3G18930.3 45.122 82 35 1 116 187 120 201 4.69e-17 80.1
Msa0935360 AT3G18930.1 45.122 82 35 1 116 187 120 201 4.69e-17 80.1
Msa0935360 AT4G10160.1 29.932 147 88 2 41 187 11 142 1.13e-16 76.6
Msa0935360 AT3G62690.1 32.117 137 80 3 53 188 35 159 1.40e-16 77.0
Msa0935360 AT5G01880.1 42.466 73 42 0 115 187 78 150 1.63e-16 74.7
Msa0935360 AT1G72310.1 42.105 76 43 1 112 187 98 172 3.26e-16 77.0
Msa0935360 AT2G27940.1 38.776 98 54 4 116 210 115 209 4.19e-16 75.5
Msa0935360 AT4G17920.1 30.189 159 103 3 32 187 2 155 5.02e-16 76.3
Msa0935360 AT4G09100.1 44.737 76 37 2 116 187 56 130 7.29e-16 72.4
Msa0935360 AT3G61550.1 36.585 82 41 1 116 186 99 180 7.68e-16 74.3
Msa0935360 AT3G10910.1 41.096 73 43 0 115 187 87 159 8.70e-16 73.6
Msa0935360 AT2G46160.1 40.506 79 39 1 116 186 104 182 8.89e-16 73.9
Msa0935360 AT2G46160.2 40.506 79 39 1 116 186 104 182 8.89e-16 73.9
Msa0935360 AT4G35480.1 57.447 47 20 0 141 187 112 158 3.80e-15 72.0
Msa0935360 AT1G49220.1 32.593 135 65 4 56 187 69 180 4.28e-15 72.8
Msa0935360 AT2G35910.1 46.377 69 37 0 116 184 121 189 4.50e-15 72.4
Msa0935360 AT1G33480.1 44.444 72 39 1 116 187 75 145 4.77e-15 72.8
Msa0935360 AT5G05280.1 40.278 72 42 1 116 187 88 158 5.46e-15 71.2
Msa0935360 AT3G14320.1 43.478 69 38 1 116 184 63 130 8.92e-15 71.2
Msa0935360 AT5G27420.1 43.421 76 38 2 116 187 95 169 1.11e-14 73.2
Msa0935360 AT5G07040.1 36.986 73 44 1 116 186 66 138 1.67e-14 69.3
Msa0935360 AT4G10150.1 43.056 72 40 1 116 187 86 156 3.09e-14 70.5
Msa0935360 AT2G18670.1 43.243 74 41 1 116 188 83 156 1.55e-13 67.4
Msa0935360 AT2G17450.1 35.802 81 45 1 114 187 67 147 1.79e-13 67.4
Msa0935360 AT5G53110.1 42.353 85 43 2 108 186 290 374 2.13e-13 69.3
Msa0935360 AT3G18773.1 29.333 150 73 4 49 187 48 175 2.34e-13 67.8
Msa0935360 AT1G32361.1 36.905 84 50 2 116 198 130 211 5.63e-13 67.8
Msa0935360 AT1G28040.1 26.846 149 94 5 41 186 161 297 7.75e-13 67.0
Msa0935360 AT3G19140.1 37.838 74 45 1 115 188 53 125 9.70e-13 64.3
Msa0935360 AT1G49210.1 37.662 77 43 2 114 187 106 180 1.30e-12 65.5
Msa0935360 AT4G24015.1 43.478 69 38 1 123 191 87 154 1.34e-12 64.7
Msa0935360 AT1G49230.1 53.191 47 22 0 141 187 130 176 1.63e-12 65.1
Msa0935360 AT1G49200.1 36.364 77 44 2 114 187 107 181 1.75e-12 65.1
Msa0935360 AT2G46493.1 37.179 78 45 2 112 186 106 182 2.71e-12 63.9
Msa0935360 AT2G46494.1 27.612 134 87 4 56 186 234 360 4.29e-12 65.5
Msa0935360 AT2G46495.2 37.333 75 44 1 115 186 262 336 6.39e-12 64.7
Msa0935360 AT1G71980.1 41.558 77 42 3 116 190 205 280 7.57e-12 65.1
Msa0935360 AT2G46495.1 37.333 75 44 1 115 186 290 364 7.80e-12 64.7
Msa0935360 AT4G11360.1 37.500 96 47 4 93 185 45 130 9.74e-12 62.0
Msa0935360 AT1G22670.1 38.462 78 45 3 116 191 205 281 1.14e-11 64.3
Msa0935360 AT3G11110.1 39.080 87 52 1 108 193 72 158 1.19e-11 61.6
Msa0935360 AT4G30370.1 38.889 72 44 0 113 184 86 157 1.29e-11 62.0
Msa0935360 AT5G58580.1 43.056 72 40 1 114 184 109 180 1.42e-11 63.5
Msa0935360 AT2G44578.1 50.000 46 23 0 142 187 70 115 1.72e-11 60.8
Msa0935360 AT3G61460.1 46.154 65 32 2 123 184 73 137 1.91e-11 61.2
Msa0935360 AT5G42200.1 36.000 75 48 0 116 190 78 152 2.32e-11 60.8
Msa0935360 AT3G60966.1 57.143 49 20 1 139 187 60 107 2.53e-11 60.5
Msa0935360 AT1G74410.1 27.551 98 70 1 92 188 125 222 2.61e-11 62.0
Msa0935360 AT3G19910.1 29.851 134 86 4 59 189 206 334 2.97e-11 62.8
Msa0935360 AT2G37580.1 54.545 44 20 0 141 184 141 184 3.91e-11 61.6
Msa0935360 AT3G20395.1 35.802 81 50 1 110 190 141 219 5.39e-11 60.8

Find 27 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCGATTTCGATGATCTT+AGG 0.158395 6_3:-5871554 Msa0935360:CDS
TTGAGGAAGTTGTTGATAAA+GGG 0.310918 6_3:-5871467 Msa0935360:CDS
GTTGAGGAAGTTGTTGATAA+AGG 0.336638 6_3:-5871468 Msa0935360:CDS
AGAGGAACACTTCAAACTAA+TGG 0.369520 6_3:-5871597 Msa0935360:CDS
TGTAATGGAGAGAATGGATT+TGG 0.372483 6_3:-5871513 Msa0935360:CDS
AGATGAAGATGGTGCTGTTC+CGG 0.420715 6_3:+5872037 None:intergenic
ATTCGATTTCGATGATCTTA+GGG 0.431362 6_3:-5871553 Msa0935360:CDS
ATATAAGTTGTATAGATACT+TGG 0.434910 6_3:-5871650 Msa0935360:CDS
TTTCAATTCAAGGAGATTGT+TGG 0.461922 6_3:-5871765 Msa0935360:CDS
AGATCATCGAAATCGAATAT+CGG 0.475880 6_3:+5871558 None:intergenic
TTAGAAGAACTTGATGAAGA+TGG 0.478882 6_3:+5871906 None:intergenic
TGTCCTTGTAATGGAGAGAA+TGG 0.491168 6_3:-5871519 Msa0935360:CDS
CTTGATGAAGATTGTGATGA+TGG 0.502333 6_3:+5872083 None:intergenic
AAACAAACAGCACAATCAAA+AGG 0.507813 6_3:+5871732 None:intergenic
TCAACAACATCAACAGCATC+CGG 0.522918 6_3:-5872056 Msa0935360:CDS
ACTATGATGAAAAGAACAGC+TGG 0.524123 6_3:+5871996 None:intergenic
GATGATCTTAGGGAAGATGA+TGG 0.535942 6_3:-5871543 Msa0935360:CDS
TGAGGAAGTTGTTGATAAAG+GGG 0.540146 6_3:-5871466 Msa0935360:CDS
GATGATGGTTGTCCTTGTAA+TGG 0.542547 6_3:-5871528 Msa0935360:CDS
AATCCATTCTCTCCATTACA+AGG 0.564226 6_3:+5871516 None:intergenic
TGAAGTGTTCCTCTACAAAG+AGG 0.570614 6_3:+5871606 None:intergenic
TTAGTACTAGAAGATGAAGA+TGG 0.602759 6_3:+5872026 None:intergenic
GAAGATTGTGATGATGGTGG+TGG 0.606961 6_3:+5872089 None:intergenic
TACAACTTATATGAAAAGCA+TGG 0.613483 6_3:+5871661 None:intergenic
TGAAAAGCATGGCTACACAT+AGG 0.613953 6_3:+5871672 None:intergenic
TCTACATGTCCTCTTTGTAG+AGG 0.648357 6_3:-5871615 Msa0935360:CDS
GATGAAGATTGTGATGATGG+TGG 0.694129 6_3:+5872086 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTATTTATTTATTTT+TGG + chr6_3:5869283-5869302 None:intergenic 0.0%
!!! GAATAATATTATTTTGAATT+GGG + chr6_3:5869135-5869154 None:intergenic 10.0%
!!! AGAATAATATTATTTTGAAT+TGG + chr6_3:5869136-5869155 None:intergenic 10.0%
!! TATTAAATATCATCTAAATT+AGG - chr6_3:5870766-5870785 Msa0935360:intron 10.0%
!! CATTAAATATAAAATTAGAT+GGG - chr6_3:5870911-5870930 Msa0935360:intron 10.0%
!! ATTAAATATAAAATTAGATG+GGG - chr6_3:5870912-5870931 Msa0935360:intron 10.0%
!! AAAGTAAAATTATATTAGAT+GGG - chr6_3:5870957-5870976 Msa0935360:intron 10.0%
!!! AATTTTAATTTTATGCTTTA+TGG + chr6_3:5870996-5871015 None:intergenic 10.0%
!! AATTAAAATTAGATTATATG+GGG - chr6_3:5871006-5871025 Msa0935360:intron 10.0%
!!! AATTTTAATTTTATGCTTTA+TGG + chr6_3:5870996-5871015 None:intergenic 10.0%
!! AGCATAAAATTAAAATTATA+TGG - chr6_3:5871046-5871065 Msa0935360:intron 10.0%
!! GCATAAAATTAAAATTATAT+GGG - chr6_3:5871047-5871066 Msa0935360:intron 10.0%
!! CATAAAATTAAAATTATATG+GGG - chr6_3:5871048-5871067 Msa0935360:intron 10.0%
!!! AATTTTAATTTTATGCTTTA+TGG + chr6_3:5870996-5871015 None:intergenic 10.0%
!! AATTAAAATTAGATTATATG+GGG - chr6_3:5871006-5871025 Msa0935360:intron 10.0%
!!! AATTTTAATTTTATGCTTTA+TGG + chr6_3:5870996-5871015 None:intergenic 10.0%
!! ATATGTGATAAGTAATAATA+AGG + chr6_3:5867437-5867456 None:intergenic 15.0%
!!! ATCAATATTTTATAAGTTTC+AGG - chr6_3:5867547-5867566 Msa0935360:intron 15.0%
!! AGTTCAATAAATTATTTGAA+AGG + chr6_3:5867862-5867881 None:intergenic 15.0%
!! AGTTCAATAAATTATTTGAA+AGG + chr6_3:5867862-5867881 None:intergenic 15.0%
!! ATAAATCTTGAAAGAATATT+GGG + chr6_3:5868070-5868089 None:intergenic 15.0%
!! CTAAAATCAATGATATATTA+GGG - chr6_3:5868171-5868190 Msa0935360:intron 15.0%
!! TAAAATCAATGATATATTAG+GGG - chr6_3:5868172-5868191 Msa0935360:intron 15.0%
!! TTATATATATAGTAATTGGT+TGG - chr6_3:5868199-5868218 Msa0935360:intron 15.0%
!! ATGTCTTATAATCTATATTA+TGG + chr6_3:5868263-5868282 None:intergenic 15.0%
!! TTATCAAATTCTTTATGAAA+AGG - chr6_3:5868428-5868447 Msa0935360:intron 15.0%
!! AATTAGTTGAAAAAACAAAT+TGG + chr6_3:5868679-5868698 None:intergenic 15.0%
!! AAATTGTATAAATTTATCGT+TGG + chr6_3:5868742-5868761 None:intergenic 15.0%
!! AAATATAATATGTAAACTTC+TGG - chr6_3:5868805-5868824 Msa0935360:intron 15.0%
!!! TAATTTTATGCATATTTTGT+TGG + chr6_3:5868979-5868998 None:intergenic 15.0%
!!! CAATGAAATTTTAATTATTG+TGG + chr6_3:5869234-5869253 None:intergenic 15.0%
!! CACAATAATTAAAATTTCAT+TGG - chr6_3:5869232-5869251 Msa0935360:intron 15.0%
!! ATCGTTGATATTAAATAAAA+TGG + chr6_3:5870285-5870304 None:intergenic 15.0%
!!! TGTATAATTACTTTTTGTTT+TGG + chr6_3:5870349-5870368 None:intergenic 15.0%
!!! ATTCATAATATTGATTCATA+AGG + chr6_3:5870876-5870895 None:intergenic 15.0%
!! TTATGAATCAATATTATGAA+TGG - chr6_3:5870875-5870894 Msa0935360:intron 15.0%
!! TATGAATCAATATTATGAAT+GGG - chr6_3:5870876-5870895 Msa0935360:intron 15.0%
!!! TCTAATTTTATATTTAATGG+AGG + chr6_3:5870910-5870929 None:intergenic 15.0%
!!! CCATCTAATTTTATATTTAA+TGG + chr6_3:5870913-5870932 None:intergenic 15.0%
!! CCATTAAATATAAAATTAGA+TGG - chr6_3:5870910-5870929 Msa0935360:intron 15.0%
!!! AATTTTACTTTCATGTTTAA+TGG + chr6_3:5870948-5870967 None:intergenic 15.0%
!! GAAAGTAAAATTATATTAGA+TGG - chr6_3:5870956-5870975 Msa0935360:intron 15.0%
!! AATTAAAATTAGATTAGATG+TGG - chr6_3:5871142-5871161 Msa0935360:intron 15.0%
!!! TATTGTTATTATTTTTATGG+AGG + chr6_3:5871176-5871195 None:intergenic 15.0%
!!! AATATTCTAAAAGAGATATA+AGG + chr6_3:5871689-5871708 None:intergenic 15.0%
!!! TATATCTCTTTTAGAATATT+TGG - chr6_3:5871689-5871708 Msa0935360:CDS 15.0%
!!! AATATTCTAAAAGAGATATA+AGG + chr6_3:5871689-5871708 None:intergenic 15.0%
!!! TATATCTCTTTTAGAATATT+TGG - chr6_3:5871689-5871708 Msa0935360:CDS 15.0%
!!! TTGGTTTTATCTTAAAAAAA+TGG - chr6_3:5871774-5871793 Msa0935360:CDS 15.0%
!! CATCAAATTTATCAAAAAGA+TGG - chr6_3:5865838-5865857 Msa0935360:intron 20.0%
!! ATATAAGTTGTATAGATACT+TGG - chr6_3:5866316-5866335 Msa0935360:intron 20.0%
!! AATTATATAAGTCTCTCTAT+GGG + chr6_3:5866956-5866975 None:intergenic 20.0%
!! AAATTATATAAGTCTCTCTA+TGG + chr6_3:5866957-5866976 None:intergenic 20.0%
!!! GAGAGACTTATATAATTTTA+TGG - chr6_3:5866959-5866978 Msa0935360:intron 20.0%
!! TATTCGAGGATTTATATATT+TGG - chr6_3:5867672-5867691 Msa0935360:intron 20.0%
!! CAAATAATTTATTGAACTTC+AGG - chr6_3:5867864-5867883 Msa0935360:intron 20.0%
!! CAAATAATTTATTGAACTTC+AGG - chr6_3:5867864-5867883 Msa0935360:intron 20.0%
!!! AATTTGTTTTCCCAATATTA+GGG + chr6_3:5867956-5867975 None:intergenic 20.0%
!! GATAAATCTTGAAAGAATAT+TGG + chr6_3:5868071-5868090 None:intergenic 20.0%
!! TTTATCTTAGTGCATTATAT+TGG - chr6_3:5868085-5868104 Msa0935360:intron 20.0%
!!! CCTAATATATCATTGATTTT+AGG + chr6_3:5868173-5868192 None:intergenic 20.0%
!! CCTAAAATCAATGATATATT+AGG - chr6_3:5868170-5868189 Msa0935360:intron 20.0%
!! AAAATCAATGATATATTAGG+GGG - chr6_3:5868173-5868192 Msa0935360:intron 20.0%
!! GGACTTATATATATAGTAAT+TGG - chr6_3:5868195-5868214 Msa0935360:intron 20.0%
!! GTCAATTGATATTAAATAAC+CGG + chr6_3:5868399-5868418 None:intergenic 20.0%
!! TTCTTATTGTCAAATTTCTA+TGG - chr6_3:5868604-5868623 Msa0935360:intron 20.0%
!! TCTTATTGTCAAATTTCTAT+GGG - chr6_3:5868605-5868624 Msa0935360:intron 20.0%
!! AAAATAGTTAAAGAATCTTC+TGG - chr6_3:5868638-5868657 Msa0935360:intron 20.0%
!! AAAACAAATTGGATATATGT+TGG + chr6_3:5868668-5868687 None:intergenic 20.0%
!!! AGTATGTCTATTATATTTTG+AGG + chr6_3:5869050-5869069 None:intergenic 20.0%
!!! TAATAGACATACTTTTTAGA+AGG - chr6_3:5869057-5869076 Msa0935360:intron 20.0%
!!! AAACAATATCAAGGAAATTT+TGG + chr6_3:5869424-5869443 None:intergenic 20.0%
!! AAATCAAGAAAACAATATCA+AGG + chr6_3:5869433-5869452 None:intergenic 20.0%
!! ACTTGCTTATGTTTAATAAA+TGG + chr6_3:5869560-5869579 None:intergenic 20.0%
!! AAGAACTATATACATCTTAA+GGG - chr6_3:5869831-5869850 Msa0935360:intron 20.0%
!!! TCTTTTGTATAACTTATACT+AGG - chr6_3:5869876-5869895 Msa0935360:intron 20.0%
!!! AATTTTTCTTGATCATTATG+AGG + chr6_3:5870167-5870186 None:intergenic 20.0%
!!! ATAATTACTTTTTGTTTTGG+TGG + chr6_3:5870346-5870365 None:intergenic 20.0%
!!! TTTTACACATACTTACAAAA+TGG + chr6_3:5870506-5870525 None:intergenic 20.0%
!! ATGTGAAAAATTATGAATGA+AGG - chr6_3:5870534-5870553 Msa0935360:intron 20.0%
!!! TTAATGAACAGTGTTTTTAA+CGG + chr6_3:5870716-5870735 None:intergenic 20.0%
!! ATGAATCAATATTATGAATG+GGG - chr6_3:5870877-5870896 Msa0935360:intron 20.0%
!!! TTTAATTTTATGCTTTATGG+AGG + chr6_3:5870993-5871012 None:intergenic 20.0%
!!! TTTAATTTTATGCTTTATGG+AGG + chr6_3:5870993-5871012 None:intergenic 20.0%
!!! TTTAATTTTATGCTTTATGG+AGG + chr6_3:5870993-5871012 None:intergenic 20.0%
!!! TTTAATTTTATGCTTTATGG+AGG + chr6_3:5870993-5871012 None:intergenic 20.0%
!! AAGTGATTTATAACTAAGAA+TGG + chr6_3:5871203-5871222 None:intergenic 20.0%
!! AATATTATTATTATTTGCCC+CGG + chr6_3:5871249-5871268 None:intergenic 20.0%
!! ATATTAAAGTGATGAGTATT+AGG - chr6_3:5871288-5871307 Msa0935360:intron 20.0%
!! TCATGTTATGAAATAATTGA+TGG + chr6_3:5871539-5871558 None:intergenic 20.0%
!! TAAGTTTACATAACAAATGA+CGG - chr6_3:5871804-5871823 Msa0935360:CDS 20.0%
!!! ATTATTTTACACCATCAAAT+TGG - chr6_3:5871850-5871869 Msa0935360:CDS 20.0%
! TACAACTTATATGAAAAGCA+TGG + chr6_3:5866308-5866327 None:intergenic 25.0%
!! ACAAAAAGAAATTGTTGTTG+AGG - chr6_3:5866482-5866501 Msa0935360:intron 25.0%
! TTACAAATTGAGTACCTAAA+TGG + chr6_3:5866687-5866706 None:intergenic 25.0%
! CTCTTTCTTTAAACAATCTA+TGG - chr6_3:5866749-5866768 Msa0935360:intron 25.0%
!! TTTAAACAATCTATGGCTTT+TGG - chr6_3:5866756-5866775 Msa0935360:intron 25.0%
!!! GTTGATGACATAAACATTAT+CGG + chr6_3:5866798-5866817 None:intergenic 25.0%
!! TGCATTTTTATGAAAAGATC+TGG + chr6_3:5866849-5866868 None:intergenic 25.0%
!! GATCTTTTCATAAAAATGCA+TGG - chr6_3:5866849-5866868 Msa0935360:intron 25.0%
! AGCAAATAATTCAGGATATA+GGG + chr6_3:5866994-5867013 None:intergenic 25.0%
! AAGCAAATAATTCAGGATAT+AGG + chr6_3:5866995-5867014 None:intergenic 25.0%
! TCATCCATACAAATATATTG+TGG - chr6_3:5867064-5867083 Msa0935360:intron 25.0%
! GCACATCTTTCATATAATTT+GGG - chr6_3:5867086-5867105 Msa0935360:intron 25.0%
! TAATTAAGTTCAATAGCACA+TGG + chr6_3:5867116-5867135 None:intergenic 25.0%
! ATAAATCCTCGAATAAGAAA+AGG + chr6_3:5867667-5867686 None:intergenic 25.0%
! AAGATATAACTCATTTGCAA+AGG + chr6_3:5867812-5867831 None:intergenic 25.0%
!!! ATTTGTTTTCCCAATATTAG+GGG + chr6_3:5867955-5867974 None:intergenic 25.0%
!!! GAATTTGTTTTCCCAATATT+AGG + chr6_3:5867957-5867976 None:intergenic 25.0%
! TCAACACAATTAATGATAGA+TGG - chr6_3:5868018-5868037 Msa0935360:intron 25.0%
! AAATCAATGATATATTAGGG+GGG - chr6_3:5868174-5868193 Msa0935360:intron 25.0%
! TAACCAAACTAGAGTTTATA+AGG - chr6_3:5868290-5868309 Msa0935360:intron 25.0%
! ATACCTTATAAACTCTAGTT+TGG + chr6_3:5868296-5868315 None:intergenic 25.0%
! ATAATAATCTCACAAACTTC+TGG - chr6_3:5868484-5868503 Msa0935360:intron 25.0%
!! AGCAAATATATTGGCTAAAA+GGG + chr6_3:5868882-5868901 None:intergenic 25.0%
! AATGATGCTATAATTACTGA+AGG + chr6_3:5868914-5868933 None:intergenic 25.0%
! AGTAATTATAGCATCATTTG+TGG - chr6_3:5868916-5868935 Msa0935360:intron 25.0%
! GATCAAGAGATAGAAATTAA+AGG + chr6_3:5869354-5869373 None:intergenic 25.0%
!!! TTTCTTGATTTTGTTACTTC+AGG - chr6_3:5869442-5869461 Msa0935360:intron 25.0%
! GATCTTATCTATTTGAATTG+CGG - chr6_3:5869519-5869538 Msa0935360:intron 25.0%
! TAATATTAAATCATCCCAGA+AGG + chr6_3:5869602-5869621 None:intergenic 25.0%
! CAAGAACTATATACATCTTA+AGG - chr6_3:5869830-5869849 Msa0935360:intron 25.0%
! AGAACTATATACATCTTAAG+GGG - chr6_3:5869832-5869851 Msa0935360:intron 25.0%
! AATTCTTTATACAATCCTTC+AGG - chr6_3:5870187-5870206 Msa0935360:intron 25.0%
! ATTCTTTATACAATCCTTCA+GGG - chr6_3:5870188-5870207 Msa0935360:intron 25.0%
! AAAAATTATGAATGAAGGTG+AGG - chr6_3:5870539-5870558 Msa0935360:intron 25.0%
!! GTTTTTAACGGTAACAATAA+CGG + chr6_3:5870594-5870613 None:intergenic 25.0%
! TTTACTTTCATGTTTAATGG+AGG + chr6_3:5870945-5870964 None:intergenic 25.0%
! TTAGTTATAAATCACTTGAC+AGG - chr6_3:5871206-5871225 Msa0935360:intron 25.0%
! TTACATCGTAGCATATTTAT+AGG - chr6_3:5871451-5871470 Msa0935360:intron 25.0%
! TACATCGTAGCATATTTATA+GGG - chr6_3:5871452-5871471 Msa0935360:intron 25.0%
! GAGAAAATGAGCAATTATTT+GGG - chr6_3:5871474-5871493 Msa0935360:CDS 25.0%
! AGAAAATGAGCAATTATTTG+GGG - chr6_3:5871475-5871494 Msa0935360:CDS 25.0%
! TGTTATGAAATAATTGATGG+TGG + chr6_3:5871536-5871555 None:intergenic 25.0%
!! TTCTAAAAGAGATATAAGGT+TGG + chr6_3:5871685-5871704 None:intergenic 25.0%
!! TTCTAAAAGAGATATAAGGT+TGG + chr6_3:5871685-5871704 None:intergenic 25.0%
! AAGTTTACATAACAAATGAC+GGG - chr6_3:5871805-5871824 Msa0935360:CDS 25.0%
!! AAGTCAATTTGATTAGTTGT+CGG + chr6_3:5872009-5872028 None:intergenic 25.0%
TTAGTACTAGAAGATGAAGA+TGG + chr6_3:5865943-5865962 None:intergenic 30.0%
!!! GCTGTTTTGTTTTTCATATC+TGG - chr6_3:5866000-5866019 Msa0935360:intron 30.0%
TTAGAAGAACTTGATGAAGA+TGG + chr6_3:5866063-5866082 None:intergenic 30.0%
!! CTTTTTCATCTTCATGATTC+TGG - chr6_3:5866144-5866163 Msa0935360:intron 30.0%
!! ACTACCTGTTTTTCAATTCA+AGG - chr6_3:5866191-5866210 Msa0935360:intron 30.0%
ATCTCCTTGAATTGAAAAAC+AGG + chr6_3:5866198-5866217 None:intergenic 30.0%
TTTCAATTCAAGGAGATTGT+TGG - chr6_3:5866201-5866220 Msa0935360:intron 30.0%
AAACAAACAGCACAATCAAA+AGG + chr6_3:5866237-5866256 None:intergenic 30.0%
AGATCATCGAAATCGAATAT+CGG + chr6_3:5866411-5866430 None:intergenic 30.0%
TATTCGATTTCGATGATCTT+AGG - chr6_3:5866412-5866431 Msa0935360:intron 30.0%
ATTCGATTTCGATGATCTTA+GGG - chr6_3:5866413-5866432 Msa0935360:intron 30.0%
! TTGAGGAAGTTGTTGATAAA+GGG - chr6_3:5866499-5866518 Msa0935360:intron 30.0%
CATAAAAATGCATGGACAAA+TGG - chr6_3:5866857-5866876 Msa0935360:intron 30.0%
TATCCTGAATTATTTGCTTC+AGG - chr6_3:5866996-5867015 Msa0935360:intron 30.0%
TCAGGCAAATTAAATCATTG+AGG - chr6_3:5867014-5867033 Msa0935360:intron 30.0%
CAGGCAAATTAAATCATTGA+GGG - chr6_3:5867015-5867034 Msa0935360:intron 30.0%
TGTGCCACAATATATTTGTA+TGG + chr6_3:5867071-5867090 None:intergenic 30.0%
GGCACATCTTTCATATAATT+TGG - chr6_3:5867085-5867104 Msa0935360:intron 30.0%
AAAGTTCTTGAATTCACTTC+AGG - chr6_3:5867144-5867163 Msa0935360:intron 30.0%
TATGTTCACGTGAAGAAAAT+TGG + chr6_3:5867223-5867242 None:intergenic 30.0%
TCGCGAAAAGAGAATTAAAA+TGG + chr6_3:5867271-5867290 None:intergenic 30.0%
! GCTTTGTAAAGCTGAATTTT+TGG + chr6_3:5867349-5867368 None:intergenic 30.0%
GTATATTAAAGATCTGCAGA+TGG + chr6_3:5867401-5867420 None:intergenic 30.0%
TCATGAAAGAAAGATCTCAA+TGG + chr6_3:5867519-5867538 None:intergenic 30.0%
GCATATTAGATTATCCTACA+TGG - chr6_3:5867739-5867758 Msa0935360:intron 30.0%
AATGAAAAAGATGTCCATGT+AGG + chr6_3:5867756-5867775 None:intergenic 30.0%
!! ACATGGACATCTTTTTCATT+TGG - chr6_3:5867756-5867775 Msa0935360:intron 30.0%
TGCAAATGAGTTATATCTTG+AGG - chr6_3:5867813-5867832 Msa0935360:intron 30.0%
TTATTATCTCCCCCTAATAT+TGG - chr6_3:5867942-5867961 Msa0935360:intron 30.0%
TATTATCTCCCCCTAATATT+GGG - chr6_3:5867943-5867962 Msa0935360:intron 30.0%
!! TTTGTTTTCCCAATATTAGG+GGG + chr6_3:5867954-5867973 None:intergenic 30.0%
!! TTTCTCATTCAAGTGGATTT+TGG + chr6_3:5868136-5868155 None:intergenic 30.0%
CCTAATATTTCTCATTCAAG+TGG + chr6_3:5868143-5868162 None:intergenic 30.0%
CCACTTGAATGAGAAATATT+AGG - chr6_3:5868140-5868159 Msa0935360:intron 30.0%
AACTTTAGACGTCTAAAGAA+TGG - chr6_3:5868343-5868362 Msa0935360:intron 30.0%
! CATTTTTATGTGTATGCTTC+CGG - chr6_3:5868377-5868396 Msa0935360:intron 30.0%
CAATGATCATGTAAATCACT+TGG + chr6_3:5868545-5868564 None:intergenic 30.0%
ATGAGTCTCTCACTTATATA+AGG + chr6_3:5868585-5868604 None:intergenic 30.0%
! GAGCAAATATATTGGCTAAA+AGG + chr6_3:5868883-5868902 None:intergenic 30.0%
TTCCAGAAGAGCAAATATAT+TGG + chr6_3:5868891-5868910 None:intergenic 30.0%
AATTATTGTGATCCTTAGTG+AGG - chr6_3:5868994-5869013 Msa0935360:intron 30.0%
!! AATAGATTTGCTATCCTTCA+AGG - chr6_3:5869779-5869798 Msa0935360:intron 30.0%
TAAATATCAAGCATCCTTGA+AGG + chr6_3:5869796-5869815 None:intergenic 30.0%
TTCTTTATCATTGTCGATAG+AGG + chr6_3:5869966-5869985 None:intergenic 30.0%
AAAATCATGAAAATCCCTGA+AGG + chr6_3:5870205-5870224 None:intergenic 30.0%
!!! ATTACTTTTTGTTTTGGTGG+AGG + chr6_3:5870343-5870362 None:intergenic 30.0%
ATACAAGCCACGATTAATAA+TGG - chr6_3:5870364-5870383 Msa0935360:intron 30.0%
AGTCTTACCATTATTAATCG+TGG + chr6_3:5870374-5870393 None:intergenic 30.0%
! TTCTCCTGTTTCTTCAATAA+GGG - chr6_3:5870420-5870439 Msa0935360:intron 30.0%
! ATGAAGGTGAGGTATTTATA+AGG - chr6_3:5870550-5870569 Msa0935360:intron 30.0%
!! GCTATGAACAGTGTTTTTAA+CGG + chr6_3:5870606-5870625 None:intergenic 30.0%
!! GCTATGAACAGTGTTTTAAA+CGG + chr6_3:5870628-5870647 None:intergenic 30.0%
TTCATGAACAGTGATTTCAA+CGG + chr6_3:5870650-5870669 None:intergenic 30.0%
GTCATGAACAGTAAAATCAA+CGG + chr6_3:5870694-5870713 None:intergenic 30.0%
AAAACACTGTTCATTAACGT+TGG - chr6_3:5870719-5870738 Msa0935360:intron 30.0%
TATGCTACGATGTAATAGAA+AGG + chr6_3:5871446-5871465 None:intergenic 30.0%
GGAGAAAATGAGCAATTATT+TGG - chr6_3:5871473-5871492 Msa0935360:CDS 30.0%
AGTTTACATAACAAATGACG+GGG - chr6_3:5871806-5871825 Msa0935360:CDS 30.0%
! AGTCAATTTGATTAGTTGTC+GGG + chr6_3:5872008-5872027 None:intergenic 30.0%
CTAAACTCTCATTCTGAATT+TGG - chr6_3:5872095-5872114 Msa0935360:CDS 30.0%
CTTGATGAAGATTGTGATGA+TGG + chr6_3:5865886-5865905 None:intergenic 35.0%
ACTATGATGAAAAGAACAGC+TGG + chr6_3:5865973-5865992 None:intergenic 35.0%
! AGCTGTTCTTTTCATCATAG+TGG - chr6_3:5865972-5865991 Msa0935360:intron 35.0%
AGAGGAACACTTCAAACTAA+TGG - chr6_3:5866369-5866388 Msa0935360:intron 35.0%
AATCCATTCTCTCCATTACA+AGG + chr6_3:5866453-5866472 None:intergenic 35.0%
! TGTAATGGAGAGAATGGATT+TGG - chr6_3:5866453-5866472 Msa0935360:intron 35.0%
! GTTGAGGAAGTTGTTGATAA+AGG - chr6_3:5866498-5866517 Msa0935360:intron 35.0%
! TGAGGAAGTTGTTGATAAAG+GGG - chr6_3:5866500-5866519 Msa0935360:intron 35.0%
AAATTGAGTACCTAAATGGC+GGG + chr6_3:5866683-5866702 None:intergenic 35.0%
CAAATTGAGTACCTAAATGG+CGG + chr6_3:5866684-5866703 None:intergenic 35.0%
!! GGAAAGACAAAGTTTTGTCT+TGG + chr6_3:5866711-5866730 None:intergenic 35.0%
! AGTGAATATTTGCTGAAGGA+AGG + chr6_3:5866897-5866916 None:intergenic 35.0%
TTGCCTGAAGCAAATAATTC+AGG + chr6_3:5867002-5867021 None:intergenic 35.0%
TAAGTTCAATAGCACATGGA+AGG + chr6_3:5867112-5867131 None:intergenic 35.0%
!!! CAAAGCGATTTTGATTTCAC+TGG - chr6_3:5867363-5867382 Msa0935360:intron 35.0%
TTGTTCCAGAAGAACTAATC+AGG + chr6_3:5867575-5867594 None:intergenic 35.0%
TGAGTTTCTATATCCTCGTT+TGG - chr6_3:5867622-5867641 Msa0935360:intron 35.0%
GAGTTTCTATATCCTCGTTT+GGG - chr6_3:5867623-5867642 Msa0935360:intron 35.0%
AAAGAATGATAACCCAAACG+AGG + chr6_3:5867638-5867657 None:intergenic 35.0%
! TAAGCTCCTTTTCTTATTCG+AGG - chr6_3:5867658-5867677 Msa0935360:intron 35.0%
! CGGAAGCATACACATAAAAA+TGG + chr6_3:5868379-5868398 None:intergenic 35.0%
AAATTTATCGTTGGCAAGAC+CGG + chr6_3:5868733-5868752 None:intergenic 35.0%
CTGCACTTATAATAGTGCAA+TGG + chr6_3:5868849-5868868 None:intergenic 35.0%
AGCCAATATATTTGCTCTTC+TGG - chr6_3:5868886-5868905 Msa0935360:intron 35.0%
! TTTGTTACTTCAGGAACAAG+AGG - chr6_3:5869451-5869470 Msa0935360:intron 35.0%
! TCACAATTTTGCAATCCTTC+TGG - chr6_3:5869584-5869603 Msa0935360:intron 35.0%
! CACAATTTTGCAATCCTTCT+GGG - chr6_3:5869585-5869604 Msa0935360:intron 35.0%
CAGTTCTCGAAGAATTAATG+TGG + chr6_3:5869699-5869718 None:intergenic 35.0%
! CTTCTCCTGTTTCTTCAATA+AGG - chr6_3:5870419-5870438 Msa0935360:intron 35.0%
CAAATGCATCTCTCTATTTG+TGG + chr6_3:5870470-5870489 None:intergenic 35.0%
GAACGTTAAAATCACTGTTC+AGG - chr6_3:5870667-5870686 Msa0935360:intron 35.0%
AGTTTACACTACTGATAGGT+AGG + chr6_3:5871317-5871336 None:intergenic 35.0%
AGGAAGTTTACACTACTGAT+AGG + chr6_3:5871321-5871340 None:intergenic 35.0%
AGGAGCAATAATATGAAGTG+TGG - chr6_3:5871505-5871524 Msa0935360:CDS 35.0%
GGAGCAATAATATGAAGTGT+GGG - chr6_3:5871506-5871525 Msa0935360:CDS 35.0%
!! TAAGGTTGGTTTGATGTTTG+AGG + chr6_3:5871671-5871690 None:intergenic 35.0%
!! TAAGGTTGGTTTGATGTTTG+AGG + chr6_3:5871671-5871690 None:intergenic 35.0%
TTTACACCATCAAATTGGCT+TGG - chr6_3:5871855-5871874 Msa0935360:CDS 35.0%
! GTCAATTTGATTAGTTGTCG+GGG + chr6_3:5872007-5872026 None:intergenic 35.0%
!! GATGAAGATTGTGATGATGG+TGG + chr6_3:5865883-5865902 None:intergenic 40.0%
TCAACAACATCAACAGCATC+CGG - chr6_3:5865910-5865929 Msa0935360:intron 40.0%
! TGAAAAGCATGGCTACACAT+AGG + chr6_3:5866297-5866316 None:intergenic 40.0%
TCTACATGTCCTCTTTGTAG+AGG - chr6_3:5866351-5866370 Msa0935360:intron 40.0%
! TGAAGTGTTCCTCTACAAAG+AGG + chr6_3:5866363-5866382 None:intergenic 40.0%
GATGATCTTAGGGAAGATGA+TGG - chr6_3:5866423-5866442 Msa0935360:intron 40.0%
! GATGATGGTTGTCCTTGTAA+TGG - chr6_3:5866438-5866457 Msa0935360:intron 40.0%
! TGTCCTTGTAATGGAGAGAA+TGG - chr6_3:5866447-5866466 Msa0935360:intron 40.0%
!! TGTTGATAAAGGGGTTTTGC+CGG - chr6_3:5866509-5866528 Msa0935360:intron 40.0%
GAGTTCGAGATGAAAGACTT+AGG + chr6_3:5866732-5866751 None:intergenic 40.0%
! CCTCAGTGAATATTTGCTGA+AGG + chr6_3:5866901-5866920 None:intergenic 40.0%
CCTTCAGCAAATATTCACTG+AGG - chr6_3:5866898-5866917 Msa0935360:intron 40.0%
TAAAACAATCAGGACGCATG+TGG + chr6_3:5866932-5866951 None:intergenic 40.0%
! CTCTATGGGCTAAAACAATC+AGG + chr6_3:5866942-5866961 None:intergenic 40.0%
!! TGTCGACGTTGACTTCATTT+CGG - chr6_3:5867481-5867500 Msa0935360:intron 40.0%
! AGGTACCTGATTAGTTCTTC+TGG - chr6_3:5867567-5867586 Msa0935360:intron 40.0%
CTGAAGCATGGTAGATCAAT+CGG + chr6_3:5867700-5867719 None:intergenic 40.0%
TCAATTGAGAATCAGCCTAC+TGG - chr6_3:5867978-5867997 Msa0935360:intron 40.0%
CAATTGAGAATCAGCCTACT+GGG - chr6_3:5867979-5867998 Msa0935360:intron 40.0%
CAACTTATTTACAGCCCAGT+AGG + chr6_3:5867996-5868015 None:intergenic 40.0%
CTACTGGGCTGTAAATAAGT+TGG - chr6_3:5867994-5868013 Msa0935360:intron 40.0%
! ATCTCACAAACTTCTGGTTG+TGG - chr6_3:5868490-5868509 Msa0935360:intron 40.0%
AGTTCTCCTGTCAACTAACA+AGG - chr6_3:5869107-5869126 Msa0935360:intron 40.0%
CGTTCAATCACAAATGCGAT+AGG - chr6_3:5869398-5869417 Msa0935360:intron 40.0%
TCATTGTCGATAGAGGTTTG+TGG + chr6_3:5869959-5869978 None:intergenic 40.0%
TTCGCCCTTATTGAAGAAAC+AGG + chr6_3:5870427-5870446 None:intergenic 40.0%
! GGTTGCCAGTTTTCTATAAC+CGG - chr6_3:5871227-5871246 Msa0935360:intron 40.0%
! GTTGCCAGTTTTCTATAACC+GGG - chr6_3:5871228-5871247 Msa0935360:intron 40.0%
! TTGCCAGTTTTCTATAACCG+GGG - chr6_3:5871229-5871248 Msa0935360:intron 40.0%
!! ATCAGCACGATTGTTTCTAC+AGG + chr6_3:5871341-5871360 None:intergenic 40.0%
! TGAGCAATTATTTGGGGTAG+TGG - chr6_3:5871481-5871500 Msa0935360:CDS 40.0%
! GAGCAATTATTTGGGGTAGT+GGG - chr6_3:5871482-5871501 Msa0935360:CDS 40.0%
TTATCGCCAAGCCAATTTGA+TGG + chr6_3:5871864-5871883 None:intergenic 40.0%
!! GAAGATTGTGATGATGGTGG+TGG + chr6_3:5865880-5865899 None:intergenic 45.0%
!! AGATGAAGATGGTGCTGTTC+CGG + chr6_3:5865932-5865951 None:intergenic 45.0%
TTGAATTTCCCGAGTCGAAC+CGG + chr6_3:5866531-5866550 None:intergenic 45.0%
!! ATGGCTTTTGGAAGCTCTTC+AGG - chr6_3:5866768-5866787 Msa0935360:intron 45.0%
ACTTCACATCTTCGAGTGTG+CGG - chr6_3:5867314-5867333 Msa0935360:intron 45.0%
CGATTGATCTACCATGCTTC+AGG - chr6_3:5867698-5867717 Msa0935360:intron 45.0%
TAGATCCGTGATAACCCAAC+CGG - chr6_3:5868711-5868730 Msa0935360:intron 45.0%
CCTAGAACTTGACCTCACTA+AGG + chr6_3:5869009-5869028 None:intergenic 45.0%
CCTTAGTGAGGTCAAGTTCT+AGG - chr6_3:5869006-5869025 Msa0935360:intron 45.0%
TGGGAACCTTGTTAGTTGAC+AGG + chr6_3:5869116-5869135 None:intergenic 45.0%
TTGCCCCGGTTATAGAAAAC+TGG + chr6_3:5871235-5871254 None:intergenic 45.0%
!! CAATTATTTGGGGTAGTGGG+AGG - chr6_3:5871485-5871504 Msa0935360:CDS 45.0%
! TGATTAGTTGTCGGGGCATA+CGG + chr6_3:5872000-5872019 None:intergenic 45.0%
!! AAAATTAAAATTAGATTATA+TGG - chr6_3:5871004-5871023 Msa0935360:intron 5.0%
!! AAATTAAAATTAGATTATAT+GGG - chr6_3:5871005-5871024 Msa0935360:intron 5.0%
!! AAAATTAAAATTAGATTATA+TGG - chr6_3:5871004-5871023 Msa0935360:intron 5.0%
!! AAATTAAAATTAGATTATAT+GGG - chr6_3:5871005-5871024 Msa0935360:intron 5.0%
!!! TATTATTGTTATTATTTTTA+TGG + chr6_3:5871179-5871198 None:intergenic 5.0%
GCACAAGAATCCCGCCATTT+AGG - chr6_3:5866670-5866689 Msa0935360:intron 50.0%
TCTCAACTGTGCCTGAAGCA+TGG + chr6_3:5867712-5867731 None:intergenic 50.0%
CAAGACCGGTTGGGTTATCA+CGG + chr6_3:5868719-5868738 None:intergenic 50.0%
TATCGTTGGCAAGACCGGTT+GGG + chr6_3:5868728-5868747 None:intergenic 50.0%
TTATCGTTGGCAAGACCGGT+TGG + chr6_3:5868729-5868748 None:intergenic 50.0%
ATTAGTTGTCGGGGCATACG+GGG + chr6_3:5871998-5872017 None:intergenic 50.0%
! GATTAGTTGTCGGGGCATAC+GGG + chr6_3:5871999-5872018 None:intergenic 50.0%
! TCTTCGAGTGTGCGGACTAC+AGG - chr6_3:5867322-5867341 Msa0935360:intron 55.0%
!!! GGGGTTTTGCCGGTTCGACT+CGG - chr6_3:5866519-5866538 Msa0935360:intron 60.0%
!!! GGGTTTTGCCGGTTCGACTC+GGG - chr6_3:5866520-5866539 Msa0935360:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 5865820 5872168 5865820 ID=Msa0935360;Name=Msa0935360
chr6_3 mRNA 5865820 5872168 5865820 ID=Msa0935360-mRNA-1;Parent=Msa0935360;Name=Msa0935360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.5|1|1|2|0|246
chr6_3 exon 5871458 5872168 5871458 ID=Msa0935360-mRNA-1:exon:1769;Parent=Msa0935360-mRNA-1
chr6_3 exon 5865820 5865849 5865820 ID=Msa0935360-mRNA-1:exon:1768;Parent=Msa0935360-mRNA-1
chr6_3 CDS 5871458 5872168 5871458 ID=Msa0935360-mRNA-1:cds;Parent=Msa0935360-mRNA-1
chr6_3 CDS 5865820 5865849 5865820 ID=Msa0935360-mRNA-1:cds;Parent=Msa0935360-mRNA-1
Gene Sequence

>Msa0935360

ATGTCTTTGATTAATCATCATCAAATTTATCAAAAAGATGGTTACTTTATGAATTTTCCACCACCATCATCACAATCTTCATCAAGTTCTTCAACAACATCAACAGCATCCGGAACAGCACCATCTTCATCTTCTAGTACTAAGATTAGTCCAGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATATCTGGTTTACTTCATTTGCTTGTTAGATTTCTTATAAAGCATCCATCTTCATCAAGTTCTTCTAATAGACAACAACATCATAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGCTACAACAGCTTTTTCATCTTCATGATTCTGGTTTAGATCAAGCTTTTATTGATGCACTACCTGTTTTTCAATTCAAGGAGATTGTTGGTTTGAATGAGCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTACTGAGAAAGATAAGCTGAGATTGTTACCTATGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGCTACTTTCAAACTCTACATGTCCTCTTTGTAGAGGAACACTTCAAACTAATGGATTTTCTATTGAAAATCCGATATTCGATTTCGATGATCTTAGGGAAGATGATGGTTGTCCTTGTAATGGAGAGAATGGATTTGGTACTAGACAAAAAGAAATTGTTGTTGAGGAAGTTGTTGATAAAGGGGTTTTGCCGAGCATCTTTACAATTATATATAAACTTTAG
Protein sequence

>Msa0935360

MSLINHHQIYQKDGYFMNFPPPSSQSSSSSSTTSTASGTAPSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSSSSNRQQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLQTNGFSIENPIFDFDDLREDDGCPCNGENGFGTRQKEIVVEEVVDKGVLPSIFTIIYKL*