Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935590 | sp|P64956|Y2253_MYCBO | 43.307 | 127 | 71 | 1 | 175 | 300 | 1 | 127 | 2.18e-22 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935590 | A0A396H9H0 | 95.584 | 317 | 14 | 0 | 1 | 317 | 1 | 317 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0700460 | Msa0935590 | 0.805270 | 1.447737e-49 | -8.615850e-47 |
| Msa0935590 | Msa1321340 | 0.810053 | 1.395828e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935590 | MtrunA17_Chr6g0451411 | 95.584 | 317 | 14 | 0 | 1 | 317 | 1 | 317 | 0.0 | 607 |
| Msa0935590 | MtrunA17_Chr2g0329701 | 49.839 | 311 | 128 | 2 | 3 | 313 | 89 | 371 | 1.30e-98 | 295 |
| Msa0935590 | MtrunA17_Chr7g0264421 | 48.553 | 311 | 132 | 2 | 3 | 313 | 59 | 341 | 7.62e-93 | 279 |
| Msa0935590 | MtrunA17_Chr6g0451421 | 61.314 | 137 | 53 | 0 | 177 | 313 | 9 | 145 | 1.68e-54 | 174 |
| Msa0935590 | MtrunA17_Chr6g0451391 | 94.253 | 87 | 4 | 1 | 1 | 86 | 1 | 87 | 3.20e-53 | 169 |
| Msa0935590 | MtrunA17_Chr2g0325301 | 58.824 | 136 | 56 | 0 | 176 | 311 | 10 | 145 | 1.07e-50 | 165 |
| Msa0935590 | MtrunA17_Chr6g0451441 | 50.993 | 151 | 66 | 1 | 171 | 313 | 315 | 465 | 1.84e-38 | 141 |
| Msa0935590 | MtrunA17_Chr6g0451451 | 54.762 | 84 | 38 | 0 | 230 | 313 | 1 | 84 | 1.63e-23 | 92.4 |
| Msa0935590 | MtrunA17_Chr1g0158081 | 33.607 | 122 | 79 | 1 | 179 | 300 | 1209 | 1328 | 8.88e-15 | 75.5 |
| Msa0935590 | MtrunA17_Chr3g0110591 | 33.058 | 121 | 79 | 1 | 179 | 299 | 25 | 143 | 9.04e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935590 | AT3G01410.2 | 46.945 | 311 | 139 | 3 | 1 | 311 | 5 | 289 | 4.00e-92 | 276 |
| Msa0935590 | AT3G01410.1 | 46.945 | 311 | 139 | 3 | 1 | 311 | 5 | 289 | 4.00e-92 | 276 |
| Msa0935590 | AT1G24090.1 | 45.130 | 308 | 133 | 5 | 4 | 311 | 80 | 351 | 4.00e-78 | 242 |
| Msa0935590 | AT5G51080.3 | 40.260 | 308 | 120 | 4 | 4 | 311 | 14 | 257 | 6.41e-66 | 208 |
| Msa0935590 | AT5G51080.1 | 54.167 | 144 | 66 | 0 | 168 | 311 | 177 | 320 | 4.98e-48 | 164 |
| Msa0935590 | AT5G51080.1 | 43.269 | 104 | 59 | 0 | 4 | 107 | 77 | 180 | 2.86e-18 | 84.3 |
| Msa0935590 | AT5G51080.2 | 54.167 | 144 | 66 | 0 | 168 | 311 | 177 | 320 | 4.98e-48 | 164 |
| Msa0935590 | AT5G51080.2 | 43.269 | 104 | 59 | 0 | 4 | 107 | 77 | 180 | 2.86e-18 | 84.3 |
Find 66 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATCAATCATGTTCTT+AGG | 0.166676 | 6_3:+6173457 | Msa0935590:CDS |
| CATATAGTTAGAAATTTAAT+TGG | 0.194484 | 6_3:-6174200 | None:intergenic |
| ACTTGCTGTTTGTCCTTATC+AGG | 0.263702 | 6_3:+6170906 | Msa0935590:CDS |
| TGTAACAGATTCAGGGTATA+TGG | 0.267805 | 6_3:+6173364 | Msa0935590:intron |
| TTTCAGGATCCATGTTCTTC+AGG | 0.275363 | 6_3:+6171551 | Msa0935590:intron |
| GTTCTTCCTCCGTAAGAATA+TGG | 0.275553 | 6_3:-6171847 | None:intergenic |
| CCCTAAGTTAACATTTAAAT+AGG | 0.288315 | 6_3:-6174288 | None:intergenic |
| TCTTGTAGACTTGAGTTTGA+TGG | 0.289086 | 6_3:+6172735 | Msa0935590:CDS |
| GTAAAGAAAGGGAATGTTAT+TGG | 0.292028 | 6_3:+6169500 | Msa0935590:CDS |
| CATGTAAATGCGGGTAGTTT+TGG | 0.319436 | 6_3:+6170880 | Msa0935590:CDS |
| CTCCCTGCTTGTGTGCAATC+AGG | 0.342493 | 6_3:+6173036 | Msa0935590:CDS |
| GACATTTCTTGTATAGTTTG+TGG | 0.364342 | 6_3:+6174265 | Msa0935590:three_prime_UTR |
| TCTTGTCTCACATGGACTTA+AGG | 0.366869 | 6_3:+6170831 | Msa0935590:CDS |
| GCCTATTTAAATGTTAACTT+AGG | 0.382054 | 6_3:+6174287 | Msa0935590:three_prime_UTR |
| CTTGTCTCACATGGACTTAA+GGG | 0.382399 | 6_3:+6170832 | Msa0935590:CDS |
| TCCTCATCGAAAAGCTTTCA+AGG | 0.410046 | 6_3:+6171883 | Msa0935590:CDS |
| TACACAACTATTAGTAGAAA+CGG | 0.411372 | 6_3:-6172118 | None:intergenic |
| AATCCTGGACCAGCTGGTGC+TGG | 0.416599 | 6_3:+6172771 | Msa0935590:CDS |
| TTACGGAGGAAGAACTAATA+TGG | 0.417311 | 6_3:+6171855 | Msa0935590:CDS |
| TTTCAGGATCCATATTCTTA+CGG | 0.432472 | 6_3:+6171838 | Msa0935590:intron |
| GCTTTCTATGTTGTAAAGAA+AGG | 0.433125 | 6_3:+6169488 | Msa0935590:CDS |
| CAAGATCAATCATGTTCTTA+GGG | 0.442306 | 6_3:+6173458 | Msa0935590:CDS |
| CCTATTTAAATGTTAACTTA+GGG | 0.467377 | 6_3:+6174288 | Msa0935590:three_prime_UTR |
| AAACTTATTCATCAACTCCT+TGG | 0.471646 | 6_3:-6173427 | None:intergenic |
| TTGCAAAGGAATCATGCTAT+AGG | 0.473661 | 6_3:+6172075 | Msa0935590:CDS |
| AAAGTGTCTCAAACCTGATA+AGG | 0.474134 | 6_3:-6170919 | None:intergenic |
| TTCAGGAGGAGGAACTGTTA+TGG | 0.477459 | 6_3:+6171568 | Msa0935590:CDS |
| CTTTCTATGTTGTAAAGAAA+GGG | 0.478602 | 6_3:+6169489 | Msa0935590:CDS |
| AATGTCGCATAAGATTTCTC+TGG | 0.480790 | 6_3:-6174248 | None:intergenic |
| GCTATACTGCGTGCTGAAGA+TGG | 0.482375 | 6_3:+6172795 | Msa0935590:CDS |
| TATAAGCACATCCGTGTTCA+AGG | 0.496396 | 6_3:+6173010 | Msa0935590:CDS |
| AAACCTGATTGCACACAAGC+AGG | 0.498845 | 6_3:-6173039 | None:intergenic |
| CTATACTGCGTGCTGAAGAT+GGG | 0.507342 | 6_3:+6172796 | Msa0935590:CDS |
| TATCGTTTGCGTGAAGGAGT+TGG | 0.512108 | 6_3:+6172917 | Msa0935590:CDS |
| ACACAACTATTAGTAGAAAC+GGG | 0.512579 | 6_3:-6172117 | None:intergenic |
| GGTGCGTGCAAAGGGAATCC+TGG | 0.517135 | 6_3:+6172756 | Msa0935590:CDS |
| GCTCCAGCACCAGCTGGTCC+AGG | 0.521445 | 6_3:-6172774 | None:intergenic |
| AAAGGGAATCCTGGACCAGC+TGG | 0.523320 | 6_3:+6172765 | Msa0935590:CDS |
| TGATCAACTAGGAGCATACA+TGG | 0.523480 | 6_3:+6174119 | Msa0935590:three_prime_UTR |
| ATCTTGCGATCTCTTTAATG+AGG | 0.527010 | 6_3:-6171597 | None:intergenic |
| AGCAGCACTGATAGAGTAAG+TGG | 0.536190 | 6_3:-6170857 | None:intergenic |
| CTGTAAATGGTCTTACAGTA+AGG | 0.536545 | 6_3:-6174363 | None:intergenic |
| TAGGTCTATCGTTTGCGTGA+AGG | 0.538230 | 6_3:+6172911 | Msa0935590:intron |
| CAGGATCCATGTTCTTCAGG+AGG | 0.547487 | 6_3:+6171554 | Msa0935590:intron |
| GAGTTTGATGGTGCGTGCAA+AGG | 0.553758 | 6_3:+6172747 | Msa0935590:CDS |
| AGTTTGATGGTGCGTGCAAA+GGG | 0.555043 | 6_3:+6172748 | Msa0935590:CDS |
| CAAAGGAATCATGCTATAGG+TGG | 0.561135 | 6_3:+6172078 | Msa0935590:CDS |
| AGTATAGCTCCAGCACCAGC+TGG | 0.573265 | 6_3:-6172780 | None:intergenic |
| TTCTTTACCTCAAGAAACTG+AGG | 0.573541 | 6_3:+6170804 | Msa0935590:CDS |
| CATACAGAAGATGAAAGTAA+AGG | 0.576695 | 6_3:-6169551 | None:intergenic |
| AACCTGATTGCACACAAGCA+GGG | 0.580440 | 6_3:-6173038 | None:intergenic |
| GATCCATGTTCTTCAGGAGG+AGG | 0.580570 | 6_3:+6171557 | Msa0935590:CDS |
| AGATACTCCTCAGTTTCTTG+AGG | 0.586973 | 6_3:-6170811 | None:intergenic |
| AGATAAAATAATGATCAACT+AGG | 0.590738 | 6_3:+6174108 | Msa0935590:exon |
| AGTGCTGCTCATGTAAATGC+GGG | 0.591618 | 6_3:+6170871 | Msa0935590:CDS |
| CGAATTATGCAATGAAGCCA+AGG | 0.597835 | 6_3:+6173410 | Msa0935590:CDS |
| CAGTGCTGCTCATGTAAATG+CGG | 0.597847 | 6_3:+6170870 | Msa0935590:CDS |
| GTTCCTCCTCCTGAAGAACA+TGG | 0.608819 | 6_3:-6171560 | None:intergenic |
| AATAATGTTGCTGAATATCG+AGG | 0.614886 | 6_3:+6172950 | Msa0935590:CDS |
| CAGGATCCATATTCTTACGG+AGG | 0.616635 | 6_3:+6171841 | Msa0935590:intron |
| GTATTGCTTAGCTTAATGCA+AGG | 0.629504 | 6_3:+6174340 | Msa0935590:three_prime_UTR |
| AACCTTGGAGATTTAACGCG+CGG | 0.635100 | 6_3:-6173782 | None:intergenic |
| CACACTAGCATCAAGTTGTG+TGG | 0.660919 | 6_3:-6171908 | None:intergenic |
| GAGGAGTATCTTGTCTCACA+TGG | 0.666064 | 6_3:+6170823 | Msa0935590:CDS |
| GCAGGGAGTCTCCTTGAACA+CGG | 0.676489 | 6_3:-6173021 | None:intergenic |
| GCGTGCTGAAGATGGGAGCA+AGG | 0.698100 | 6_3:+6172803 | Msa0935590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCTATTCTTATATTATA+TGG | + | chr6_3:6171790-6171809 | Msa0935590:intron | 10.0% |
| !! | ATGAAATTATTCATATAATT+AGG | - | chr6_3:6173623-6173642 | None:intergenic | 10.0% |
| !!! | ATTTTGTAAAATATCTATCT+AGG | - | chr6_3:6172667-6172686 | None:intergenic | 15.0% |
| !!! | CATTTTTTTTTTAATGTTCA+AGG | + | chr6_3:6173728-6173747 | Msa0935590:intron | 15.0% |
| !!! | TTTATTTTCATATCTTCATT+TGG | + | chr6_3:6174021-6174040 | Msa0935590:intron | 15.0% |
| !! | CATATAGTTAGAAATTTAAT+TGG | - | chr6_3:6174203-6174222 | None:intergenic | 15.0% |
| !!! | ATCAGTTTGAATTTTGAAAA+GGG | - | chr6_3:6169277-6169296 | None:intergenic | 20.0% |
| !!! | AATCAGTTTGAATTTTGAAA+AGG | - | chr6_3:6169278-6169297 | None:intergenic | 20.0% |
| !!! | AGAATCACTTTTTTAATGAT+TGG | - | chr6_3:6169308-6169327 | None:intergenic | 20.0% |
| !!! | TGGATTTTTTTTCTGTATTT+AGG | + | chr6_3:6169689-6169708 | Msa0935590:intron | 20.0% |
| !!! | GGATTTTTTTTCTGTATTTA+GGG | + | chr6_3:6169690-6169709 | Msa0935590:intron | 20.0% |
| !! | TTATTCAAACATGATCTATA+TGG | + | chr6_3:6170190-6170209 | Msa0935590:intron | 20.0% |
| !!! | TTTGGATTTTTTCTGTATTT+TGG | + | chr6_3:6170256-6170275 | Msa0935590:intron | 20.0% |
| !!! | TTGGATTTTTTCTGTATTTT+GGG | + | chr6_3:6170257-6170276 | Msa0935590:intron | 20.0% |
| !! | TAAATGGAGTTCATTTATAA+AGG | + | chr6_3:6170307-6170326 | Msa0935590:intron | 20.0% |
| !! | AAATGGAGTTCATTTATAAA+GGG | + | chr6_3:6170308-6170327 | Msa0935590:intron | 20.0% |
| !!! | TTATGATTATATTAGTGGAT+GGG | - | chr6_3:6170356-6170375 | None:intergenic | 20.0% |
| !! | TTTATGATTATATTAGTGGA+TGG | - | chr6_3:6170357-6170376 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTTCATAAGCTAA+AGG | - | chr6_3:6170440-6170459 | None:intergenic | 20.0% |
| !! | AATACAATCCAACATAATAA+GGG | - | chr6_3:6171413-6171432 | None:intergenic | 20.0% |
| !! | ATCAGATATAATGATAGTTA+TGG | - | chr6_3:6171450-6171469 | None:intergenic | 20.0% |
| !! | AGATTAATCACTATAATGAT+GGG | - | chr6_3:6171776-6171795 | None:intergenic | 20.0% |
| !! | TAGATTAATCACTATAATGA+TGG | - | chr6_3:6171777-6171796 | None:intergenic | 20.0% |
| !!! | TAAGAGATTAATTTTCTTTC+AGG | + | chr6_3:6171822-6171841 | Msa0935590:intron | 20.0% |
| !!! | TTGTTTTTCTTTCATTTGAT+TGG | + | chr6_3:6172222-6172241 | Msa0935590:intron | 20.0% |
| !!! | ATTTCATCTCTTAAAAGTTT+TGG | + | chr6_3:6172613-6172632 | Msa0935590:intron | 20.0% |
| !!! | ACATTTTGTAAGCAAAATAA+TGG | - | chr6_3:6173503-6173522 | None:intergenic | 20.0% |
| !! | GCTTTAATCTAAAAACAAAA+AGG | - | chr6_3:6173660-6173679 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTGTCTTACTATT+TGG | + | chr6_3:6173688-6173707 | Msa0935590:intron | 20.0% |
| !! | GTTTAATATGCATGAAAATT+AGG | - | chr6_3:6173949-6173968 | None:intergenic | 20.0% |
| !! | AGATAAAATAATGATCAACT+AGG | + | chr6_3:6174108-6174127 | Msa0935590:exon | 20.0% |
| !! | CCTATTTAAATGTTAACTTA+GGG | + | chr6_3:6174288-6174307 | Msa0935590:three_prime_UTR | 20.0% |
| !!! | CACTTTTTTAATGATTGGAA+AGG | - | chr6_3:6169303-6169322 | None:intergenic | 25.0% |
| !! | CAATAGTGTAAGTTACATTT+TGG | - | chr6_3:6169345-6169364 | None:intergenic | 25.0% |
| ! | CTTTCTATGTTGTAAAGAAA+GGG | + | chr6_3:6169489-6169508 | Msa0935590:CDS | 25.0% |
| ! | AAAGACAAAAACTTTGCATA+AGG | - | chr6_3:6169580-6169599 | None:intergenic | 25.0% |
| !! | TTATGCAAAGTTTTTGTCTT+TGG | + | chr6_3:6169579-6169598 | Msa0935590:intron | 25.0% |
| !!! | TTTGGAATTTTTCTGCATTT+GGG | + | chr6_3:6169597-6169616 | Msa0935590:intron | 25.0% |
| ! | AGAAAAAAAATCCATAAGCT+GGG | - | chr6_3:6169683-6169702 | None:intergenic | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | - | chr6_3:6169717-6169736 | None:intergenic | 25.0% |
| ! | CATTATTCATAAGTTTGTCA+AGG | - | chr6_3:6169830-6169849 | None:intergenic | 25.0% |
| ! | TATAAATGAACTCCATTTAG+TGG | - | chr6_3:6170306-6170325 | None:intergenic | 25.0% |
| ! | GTGGTTTATGATTATATTAG+TGG | - | chr6_3:6170361-6170380 | None:intergenic | 25.0% |
| !!! | TTTTTTTCATAAGCTAAAGG+CGG | - | chr6_3:6170437-6170456 | None:intergenic | 25.0% |
| !! | AGTCAAAATTGTTTTCATCA+AGG | - | chr6_3:6170476-6170495 | None:intergenic | 25.0% |
| ! | ATTAAACTGTTTATCCAAAC+TGG | + | chr6_3:6170603-6170622 | Msa0935590:intron | 25.0% |
| ! | CTCCTTTATATTGAACTTAT+GGG | + | chr6_3:6170637-6170656 | Msa0935590:intron | 25.0% |
| ! | TCCTTTATATTGAACTTATG+GGG | + | chr6_3:6170638-6170657 | Msa0935590:intron | 25.0% |
| !!! | CTTTGTTGTTTTGGTTAAAA+TGG | + | chr6_3:6170704-6170723 | Msa0935590:intron | 25.0% |
| !!! | TGTTTTGGTTAAAATGGAAA+TGG | + | chr6_3:6170710-6170729 | Msa0935590:intron | 25.0% |
| !!! | GTTTTGGTTAAAATGGAAAT+GGG | + | chr6_3:6170711-6170730 | Msa0935590:intron | 25.0% |
| !!! | TTTTGGTTAAAATGGAAATG+GGG | + | chr6_3:6170712-6170731 | Msa0935590:intron | 25.0% |
| !!! | AAGCTGTAAGTGTTTTTAAA+GGG | + | chr6_3:6170779-6170798 | Msa0935590:CDS | 25.0% |
| !! | CGTAAATTTTCCTCTTATAT+TGG | + | chr6_3:6170975-6170994 | Msa0935590:intron | 25.0% |
| ! | TTTCCTCTTATATTGGATAA+AGG | + | chr6_3:6170982-6171001 | Msa0935590:intron | 25.0% |
| ! | CTATTTCATCCAATGATTAT+CGG | - | chr6_3:6171032-6171051 | None:intergenic | 25.0% |
| ! | GTTCAAATTCTGTTATTCTA+TGG | + | chr6_3:6171350-6171369 | Msa0935590:intron | 25.0% |
| ! | CAATACAATCCAACATAATA+AGG | - | chr6_3:6171414-6171433 | None:intergenic | 25.0% |
| ! | AATGTAAAGGTAATAATTCC+TGG | - | chr6_3:6171672-6171691 | None:intergenic | 25.0% |
| !!! | TTTGGCATTTTTGAAGTATT+GGG | + | chr6_3:6171746-6171765 | Msa0935590:intron | 25.0% |
| !! | TAATATTCGGTGAAAATTCA+TGG | - | chr6_3:6171960-6171979 | None:intergenic | 25.0% |
| !! | CATTTTCAACAAATTTGCAA+AGG | + | chr6_3:6172061-6172080 | Msa0935590:CDS | 25.0% |
| ! | TACACAACTATTAGTAGAAA+CGG | - | chr6_3:6172121-6172140 | None:intergenic | 25.0% |
| ! | CAAAAACAATAGAGAGAAAA+AGG | + | chr6_3:6172246-6172265 | Msa0935590:intron | 25.0% |
| ! | GTCAAAAAGTTGTTAGAAAA+TGG | + | chr6_3:6172313-6172332 | Msa0935590:intron | 25.0% |
| !! | CATTTCTCATTACGATTTTA+TGG | + | chr6_3:6172348-6172367 | Msa0935590:intron | 25.0% |
| ! | ACATACATACTTTAAATGAC+AGG | - | chr6_3:6172434-6172453 | None:intergenic | 25.0% |
| !! | TGTCATTTAAAGTATGTATG+TGG | + | chr6_3:6172433-6172452 | Msa0935590:intron | 25.0% |
| ! | TGCATACAAATGAAGAAAAT+CGG | - | chr6_3:6172541-6172560 | None:intergenic | 25.0% |
| !! | GAATATCGAGGATTAATTTT+AGG | + | chr6_3:6172962-6172981 | Msa0935590:CDS | 25.0% |
| ! | AGTGAAATATAGACCAATAT+AGG | - | chr6_3:6173276-6173295 | None:intergenic | 25.0% |
| ! | ACAAAAGCAAACAAAAATGA+TGG | - | chr6_3:6173347-6173366 | None:intergenic | 25.0% |
| ! | AAAGTAAAAAACGCGAATAT+GGG | + | chr6_3:6173387-6173406 | Msa0935590:CDS | 25.0% |
| ! | GTCTAACATTTAAGAGAAAA+GGG | - | chr6_3:6173537-6173556 | None:intergenic | 25.0% |
| ! | TTAAATGTTAGACGTTACAT+TGG | + | chr6_3:6173544-6173563 | Msa0935590:intron | 25.0% |
| ! | AGTAAGACAAAAGAAAAAAG+AGG | - | chr6_3:6173685-6173704 | None:intergenic | 25.0% |
| ! | TGAAAATTAGGAGATTTAAG+TGG | - | chr6_3:6173937-6173956 | None:intergenic | 25.0% |
| !! | TTTTCATATCTTCATTTGGA+AGG | + | chr6_3:6174025-6174044 | Msa0935590:intron | 25.0% |
| ! | TTTCATATCTTCATTTGGAA+GGG | + | chr6_3:6174026-6174045 | Msa0935590:intron | 25.0% |
| !! | AAGGGGAACATAAATTTTAA+GGG | + | chr6_3:6174044-6174063 | Msa0935590:intron | 25.0% |
| ! | GCCTATTTAAATGTTAACTT+AGG | + | chr6_3:6174287-6174306 | Msa0935590:three_prime_UTR | 25.0% |
| ! | CCCTAAGTTAACATTTAAAT+AGG | - | chr6_3:6174291-6174310 | None:intergenic | 25.0% |
| !!! | AGAAAAGTGCTTTTAATGTT+TGG | + | chr6_3:6174314-6174333 | Msa0935590:three_prime_UTR | 25.0% |
| TAAAAAAGTGATTCTGCAAC+TGG | + | chr6_3:6169313-6169332 | Msa0935590:five_prime_UTR | 30.0% | |
| AAAAAAGTGATTCTGCAACT+GGG | + | chr6_3:6169314-6169333 | Msa0935590:five_prime_UTR | 30.0% | |
| GCTTTCTATGTTGTAAAGAA+AGG | + | chr6_3:6169488-6169507 | Msa0935590:CDS | 30.0% | |
| GTAAAGAAAGGGAATGTTAT+TGG | + | chr6_3:6169500-6169519 | Msa0935590:CDS | 30.0% | |
| CATACAGAAGATGAAAGTAA+AGG | - | chr6_3:6169554-6169573 | None:intergenic | 30.0% | |
| !!! | CTTTGGAATTTTTCTGCATT+TGG | + | chr6_3:6169596-6169615 | Msa0935590:intron | 30.0% |
| CAGAAAAAAAATCCATAAGC+TGG | - | chr6_3:6169684-6169703 | None:intergenic | 30.0% | |
| AAAAATAAGCCAATCCAAAC+GGG | - | chr6_3:6169716-6169735 | None:intergenic | 30.0% | |
| CACAAATCATGCATAACTAA+GGG | - | chr6_3:6169922-6169941 | None:intergenic | 30.0% | |
| TCACAAATCATGCATAACTA+AGG | - | chr6_3:6169923-6169942 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr6_3:6170051-6170070 | None:intergenic | 30.0% | |
| TAGCTTATGAAAACAGCTTA+TGG | + | chr6_3:6170089-6170108 | Msa0935590:intron | 30.0% | |
| TTCAAACATGATCTATATGG+AGG | + | chr6_3:6170193-6170212 | Msa0935590:intron | 30.0% | |
| AAGACAAAAACTTAGCATGA+AGG | - | chr6_3:6170238-6170257 | None:intergenic | 30.0% | |
| ! | TCATGCTAAGTTTTTGTCTT+TGG | + | chr6_3:6170238-6170257 | Msa0935590:intron | 30.0% |
| AATATAAAGGAGCTCCATTT+AGG | - | chr6_3:6170629-6170648 | None:intergenic | 30.0% | |
| GCTCCTTTATATTGAACTTA+TGG | + | chr6_3:6170636-6170655 | Msa0935590:intron | 30.0% | |
| ACCCCATAAGTTCAATATAA+AGG | - | chr6_3:6170642-6170661 | None:intergenic | 30.0% | |
| TTATATTGAACTTATGGGGT+TGG | + | chr6_3:6170642-6170661 | Msa0935590:intron | 30.0% | |
| !! | GAAGCTGTAAGTGTTTTTAA+AGG | + | chr6_3:6170778-6170797 | Msa0935590:CDS | 30.0% |
| CGATAATCATTGGATGAAAT+AGG | + | chr6_3:6171030-6171049 | Msa0935590:intron | 30.0% | |
| TTGAATGTAACCACATGTAT+AGG | + | chr6_3:6171057-6171076 | Msa0935590:intron | 30.0% | |
| ! | ATTTTCCTCCCTTATTATGT+TGG | + | chr6_3:6171402-6171421 | Msa0935590:intron | 30.0% |
| GAAGAGATTAATGTTCTTTC+AGG | + | chr6_3:6171535-6171554 | Msa0935590:intron | 30.0% | |
| !! | TTAAAGTTGATAACTCACAC+TGG | - | chr6_3:6171639-6171658 | None:intergenic | 30.0% |
| AACTTTAAATATCCTCAACC+AGG | + | chr6_3:6171651-6171670 | Msa0935590:intron | 30.0% | |
| !! | ATACGTCTTTGGTAATGTAA+AGG | - | chr6_3:6171685-6171704 | None:intergenic | 30.0% |
| CTTCAAAAATGCCAAAGTAT+CGG | - | chr6_3:6171742-6171761 | None:intergenic | 30.0% | |
| !!! | CTTTGGCATTTTTGAAGTAT+TGG | + | chr6_3:6171745-6171764 | Msa0935590:intron | 30.0% |
| !!! | TTGGCATTTTTGAAGTATTG+GGG | + | chr6_3:6171747-6171766 | Msa0935590:intron | 30.0% |
| TTTCAGGATCCATATTCTTA+CGG | + | chr6_3:6171838-6171857 | Msa0935590:intron | 30.0% | |
| ! | AGCCTTTCTTTGGTAATATT+CGG | - | chr6_3:6171973-6171992 | None:intergenic | 30.0% |
| ACTCTCTTCTGTACAAAAAA+AGG | - | chr6_3:6172030-6172049 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTACAGAAGAGAGT+TGG | + | chr6_3:6172030-6172049 | Msa0935590:intron | 30.0% |
| ACACAACTATTAGTAGAAAC+GGG | - | chr6_3:6172120-6172139 | None:intergenic | 30.0% | |
| ATTAACAATGCGAAACACAA+AGG | - | chr6_3:6172148-6172167 | None:intergenic | 30.0% | |
| GTACAAATATCACTACTCAA+TGG | - | chr6_3:6172173-6172192 | None:intergenic | 30.0% | |
| GTGATATTTGTACAACTCTT+TGG | + | chr6_3:6172180-6172199 | Msa0935590:intron | 30.0% | |
| ! | CATTACGATTTTATGGCTTT+CGG | + | chr6_3:6172355-6172374 | Msa0935590:intron | 30.0% |
| AGAAAATCGGGCAATTAATA+GGG | - | chr6_3:6172528-6172547 | None:intergenic | 30.0% | |
| AAGAAAATCGGGCAATTAAT+AGG | - | chr6_3:6172529-6172548 | None:intergenic | 30.0% | |
| GCATACAAATGAAGAAAATC+GGG | - | chr6_3:6172540-6172559 | None:intergenic | 30.0% | |
| AATAATGTTGCTGAATATCG+AGG | + | chr6_3:6172950-6172969 | Msa0935590:CDS | 30.0% | |
| TTGAAACAAGCTCTCAAAAA+TGG | + | chr6_3:6172986-6173005 | Msa0935590:CDS | 30.0% | |
| !! | TTTGCTTTTGTAACAGATTC+AGG | + | chr6_3:6173356-6173375 | Msa0935590:intron | 30.0% |
| !! | TTGCTTTTGTAACAGATTCA+GGG | + | chr6_3:6173357-6173376 | Msa0935590:intron | 30.0% |
| GAAAGTAAAAAACGCGAATA+TGG | + | chr6_3:6173386-6173405 | Msa0935590:CDS | 30.0% | |
| AAACTTATTCATCAACTCCT+TGG | - | chr6_3:6173430-6173449 | None:intergenic | 30.0% | |
| TCAAGATCAATCATGTTCTT+AGG | + | chr6_3:6173457-6173476 | Msa0935590:CDS | 30.0% | |
| CAAGATCAATCATGTTCTTA+GGG | + | chr6_3:6173458-6173477 | Msa0935590:CDS | 30.0% | |
| CGTCTAACATTTAAGAGAAA+AGG | - | chr6_3:6173538-6173557 | None:intergenic | 30.0% | |
| AAAGTCTTGAAATCTAACCT+TGG | - | chr6_3:6173800-6173819 | None:intergenic | 30.0% | |
| AATTAGAACTGAAACCGATA+GGG | - | chr6_3:6173831-6173850 | None:intergenic | 30.0% | |
| AAATTAGAACTGAAACCGAT+AGG | - | chr6_3:6173832-6173851 | None:intergenic | 30.0% | |
| ! | CTGAAGAATTTTCTCTATGA+TGG | + | chr6_3:6173975-6173994 | Msa0935590:intron | 30.0% |
| TTCATATCTTCATTTGGAAG+GGG | + | chr6_3:6174027-6174046 | Msa0935590:intron | 30.0% | |
| ! | GAAGGGGAACATAAATTTTA+AGG | + | chr6_3:6174043-6174062 | Msa0935590:intron | 30.0% |
| !!! | AGAGATTTTAGCTGTAACAA+AGG | + | chr6_3:6174175-6174194 | Msa0935590:three_prime_UTR | 30.0% |
| GACATTTCTTGTATAGTTTG+TGG | + | chr6_3:6174265-6174284 | Msa0935590:three_prime_UTR | 30.0% | |
| ! | AAGTGCTTTTAATGTTTGGA+TGG | + | chr6_3:6174318-6174337 | Msa0935590:three_prime_UTR | 30.0% |
| !!! | TTTTTGTAGTTGATGATGCG+TGG | - | chr6_3:6169235-6169254 | None:intergenic | 35.0% |
| TGCAAGCAAACAAGCATAAA+GGG | - | chr6_3:6169439-6169458 | None:intergenic | 35.0% | |
| !!! | TGCTTGCAGATTTTTTGCAA+TGG | + | chr6_3:6169451-6169470 | Msa0935590:intron | 35.0% |
| CAAAAACAAGCCAATCCAAA+CGG | + | chr6_3:6169895-6169914 | Msa0935590:intron | 35.0% | |
| TTGAACTACTAGAGCATGTT+TGG | + | chr6_3:6169945-6169964 | Msa0935590:intron | 35.0% | |
| TTGTGTAGTACTAGCATAAG+CGG | + | chr6_3:6169984-6170003 | Msa0935590:intron | 35.0% | |
| TGAGACTGTTTGAGAGTTTA+AGG | + | chr6_3:6170007-6170026 | Msa0935590:intron | 35.0% | |
| ! | CTTATGGTAATGTCATAAGC+TGG | - | chr6_3:6170035-6170054 | None:intergenic | 35.0% |
| TGTGATGTTGAACCACTAAA+TGG | + | chr6_3:6170291-6170310 | Msa0935590:intron | 35.0% | |
| TCATTTATAAAGGGCCTCTT+TGG | + | chr6_3:6170317-6170336 | Msa0935590:intron | 35.0% | |
| ! | GCTTATTTCTTCATCCAAAG+AGG | - | chr6_3:6170334-6170353 | None:intergenic | 35.0% |
| ! | TTTATCCAAACTGGCCTAAA+TGG | + | chr6_3:6170612-6170631 | Msa0935590:intron | 35.0% |
| !! | AAGAAGACATGGTTGTTTTC+AGG | - | chr6_3:6170687-6170706 | None:intergenic | 35.0% |
| CCAAAACAACAAAGAAGACA+TGG | - | chr6_3:6170698-6170717 | None:intergenic | 35.0% | |
| !!! | CCATGTCTTCTTTGTTGTTT+TGG | + | chr6_3:6170695-6170714 | Msa0935590:intron | 35.0% |
| ! | AGTGTTTTCATTTTCCAAGC+AGG | + | chr6_3:6170747-6170766 | Msa0935590:intron | 35.0% |
| TTCTTTACCTCAAGAAACTG+AGG | + | chr6_3:6170804-6170823 | Msa0935590:CDS | 35.0% | |
| ! | AAAGTGTCTCAAACCTGATA+AGG | - | chr6_3:6170922-6170941 | None:intergenic | 35.0% |
| AGGCCTTTATCCAATATAAG+AGG | - | chr6_3:6170988-6171007 | None:intergenic | 35.0% | |
| AGCTAACAATATCAAGCCTT+TGG | - | chr6_3:6171171-6171190 | None:intergenic | 35.0% | |
| ATTCGCAATTGACAACATTG+AGG | - | chr6_3:6171223-6171242 | None:intergenic | 35.0% | |
| ACAATCCAACATAATAAGGG+AGG | - | chr6_3:6171410-6171429 | None:intergenic | 35.0% | |
| TGTTGGATTGTATTGCATAG+TGG | + | chr6_3:6171419-6171438 | Msa0935590:intron | 35.0% | |
| ATCTTGCGATCTCTTTAATG+AGG | - | chr6_3:6171600-6171619 | None:intergenic | 35.0% | |
| AAGGTAATAATTCCTGGTTG+AGG | - | chr6_3:6171666-6171685 | None:intergenic | 35.0% | |
| ATACATGTCTGATACGTCTT+TGG | - | chr6_3:6171696-6171715 | None:intergenic | 35.0% | |
| AAGACGTATCAGACATGTAT+CGG | + | chr6_3:6171696-6171715 | Msa0935590:intron | 35.0% | |
| TTACGGAGGAAGAACTAATA+TGG | + | chr6_3:6171855-6171874 | Msa0935590:CDS | 35.0% | |
| CTAGTGTGAGTTGTAAACTT+TGG | + | chr6_3:6171923-6171942 | Msa0935590:intron | 35.0% | |
| CACCGAATATTACCAAAGAA+AGG | + | chr6_3:6171968-6171987 | Msa0935590:intron | 35.0% | |
| ATAAGCAATGAGCCTTTCTT+TGG | - | chr6_3:6171983-6172002 | None:intergenic | 35.0% | |
| TTGCAAAGGAATCATGCTAT+AGG | + | chr6_3:6172075-6172094 | Msa0935590:CDS | 35.0% | |
| ! | CTTGATTTGACCTTGTTGAT+CGG | + | chr6_3:6172387-6172406 | Msa0935590:intron | 35.0% |
| TAAAGTATGTATGTGGCACT+AGG | + | chr6_3:6172440-6172459 | Msa0935590:intron | 35.0% | |
| TGTATGCACTCATTCACAAT+TGG | + | chr6_3:6172553-6172572 | Msa0935590:intron | 35.0% | |
| TCTTGTAGACTTGAGTTTGA+TGG | + | chr6_3:6172735-6172754 | Msa0935590:CDS | 35.0% | |
| GCATCAATGTTGTTAAGTAG+TGG | + | chr6_3:6173086-6173105 | Msa0935590:intron | 35.0% | |
| GGCGAGATTTGAAAAATACT+AGG | - | chr6_3:6173242-6173261 | None:intergenic | 35.0% | |
| CCAATATAGGTATCAAGAGA+GGG | - | chr6_3:6173263-6173282 | None:intergenic | 35.0% | |
| ACCAATATAGGTATCAAGAG+AGG | - | chr6_3:6173264-6173283 | None:intergenic | 35.0% | |
| TGTAACAGATTCAGGGTATA+TGG | + | chr6_3:6173364-6173383 | Msa0935590:intron | 35.0% | |
| TTAGACGTTACATTGGCATT+TGG | + | chr6_3:6173551-6173570 | Msa0935590:intron | 35.0% | |
| TTGTGGAAATCATGACAGTT+TGG | - | chr6_3:6173870-6173889 | None:intergenic | 35.0% | |
| GTGTTAGAGACTATAGAGAA+CGG | - | chr6_3:6173905-6173924 | None:intergenic | 35.0% | |
| GAGATTTAAGTGGTGCAAAA+AGG | - | chr6_3:6173927-6173946 | None:intergenic | 35.0% | |
| ! | TTTTCACTAGCTGAAGACAA+AGG | - | chr6_3:6174151-6174170 | None:intergenic | 35.0% |
| AATGTCGCATAAGATTTCTC+TGG | - | chr6_3:6174251-6174270 | None:intergenic | 35.0% | |
| GTATTGCTTAGCTTAATGCA+AGG | + | chr6_3:6174340-6174359 | Msa0935590:three_prime_UTR | 35.0% | |
| CTGCAAGCAAACAAGCATAA+AGG | - | chr6_3:6169440-6169459 | None:intergenic | 40.0% | |
| TATGTTCTTCTCCCAGCTTA+TGG | + | chr6_3:6169669-6169688 | Msa0935590:intron | 40.0% | |
| AAACCACTCATGAGACTGTT+TGG | + | chr6_3:6170374-6170393 | Msa0935590:intron | 40.0% | |
| AACCACTCATGAGACTGTTT+GGG | + | chr6_3:6170375-6170394 | Msa0935590:intron | 40.0% | |
| !! | AGACATGGTTGTTTTCAGGA+AGG | - | chr6_3:6170683-6170702 | None:intergenic | 40.0% |
| ! | TCATTTTCCAAGCAGGTTTC+TGG | + | chr6_3:6170754-6170773 | Msa0935590:intron | 40.0% |
| AGATACTCCTCAGTTTCTTG+AGG | - | chr6_3:6170814-6170833 | None:intergenic | 40.0% | |
| TCTTGTCTCACATGGACTTA+AGG | + | chr6_3:6170831-6170850 | Msa0935590:CDS | 40.0% | |
| CTTGTCTCACATGGACTTAA+GGG | + | chr6_3:6170832-6170851 | Msa0935590:CDS | 40.0% | |
| ! | CATGTAAATGCGGGTAGTTT+TGG | + | chr6_3:6170880-6170899 | Msa0935590:CDS | 40.0% |
| !! | ACTTGCTGTTTGTCCTTATC+AGG | + | chr6_3:6170906-6170925 | Msa0935590:CDS | 40.0% |
| ATGTCGTCACCGATAATCAT+TGG | + | chr6_3:6171020-6171039 | Msa0935590:intron | 40.0% | |
| GAATCGACACTTCACATTGA+AGG | - | chr6_3:6171118-6171137 | None:intergenic | 40.0% | |
| CCTTTGGACACACAAAACAA+GGG | - | chr6_3:6171155-6171174 | None:intergenic | 40.0% | |
| CGAATCGCAAATGACAATAG+TGG | + | chr6_3:6171238-6171257 | Msa0935590:intron | 40.0% | |
| GCTATAACGCTGTAGCATAA+TGG | - | chr6_3:6171276-6171295 | None:intergenic | 40.0% | |
| ACAGCGTTATAGCTGTAACT+TGG | + | chr6_3:6171283-6171302 | Msa0935590:intron | 40.0% | |
| TGCGTATCACAGAACAATAG+TGG | + | chr6_3:6171324-6171343 | Msa0935590:intron | 40.0% | |
| AAACTTGCCAGAGACACAAA+TGG | - | chr6_3:6171490-6171509 | None:intergenic | 40.0% | |
| GTCTCTGGCAAGTTTGTAAT+TGG | + | chr6_3:6171495-6171514 | Msa0935590:intron | 40.0% | |
| TTTCAGGATCCATGTTCTTC+AGG | + | chr6_3:6171551-6171570 | Msa0935590:intron | 40.0% | |
| ! | TATCAGACATGTATCGGTGT+CGG | + | chr6_3:6171702-6171721 | Msa0935590:intron | 40.0% |
| GTTCTTCCTCCGTAAGAATA+TGG | - | chr6_3:6171850-6171869 | None:intergenic | 40.0% | |
| TCCTCATCGAAAAGCTTTCA+AGG | + | chr6_3:6171883-6171902 | Msa0935590:CDS | 40.0% | |
| ! | ACCTTGAAAGCTTTTCGATG+AGG | - | chr6_3:6171887-6171906 | None:intergenic | 40.0% |
| TCGGTGAAAATTCATGGTTG+AGG | - | chr6_3:6171954-6171973 | None:intergenic | 40.0% | |
| CAAAGGAATCATGCTATAGG+TGG | + | chr6_3:6172078-6172097 | Msa0935590:CDS | 40.0% | |
| CCAGAAAATTCCGATCAACA+AGG | - | chr6_3:6172400-6172419 | None:intergenic | 40.0% | |
| ! | CCTTGTTGATCGGAATTTTC+TGG | + | chr6_3:6172397-6172416 | Msa0935590:intron | 40.0% |
| TAACTGCCATGTCTCTTCTT+AGG | + | chr6_3:6172892-6172911 | Msa0935590:intron | 40.0% | |
| GATAGACCTAAGAAGAGACA+TGG | - | chr6_3:6172901-6172920 | None:intergenic | 40.0% | |
| TATAAGCACATCCGTGTTCA+AGG | + | chr6_3:6173010-6173029 | Msa0935590:CDS | 40.0% | |
| CCCTCTCTTGATACCTATAT+TGG | + | chr6_3:6173260-6173279 | Msa0935590:intron | 40.0% | |
| CGAATTATGCAATGAAGCCA+AGG | + | chr6_3:6173410-6173429 | Msa0935590:CDS | 40.0% | |
| ! | GACTTTTCTGAGTTCCCTAT+CGG | + | chr6_3:6173814-6173833 | Msa0935590:intron | 40.0% |
| !!! | AACGGAGCAATGTTGTTTTG+TGG | - | chr6_3:6173887-6173906 | None:intergenic | 40.0% |
| ! | GGATTTTGAACTTTTGCAGC+TGG | + | chr6_3:6174065-6174084 | Msa0935590:intron | 40.0% |
| ! | TGATCAACTAGGAGCATACA+TGG | + | chr6_3:6174119-6174138 | Msa0935590:three_prime_UTR | 40.0% |
| ! | TTCTGTATTTAGGGCCCGTT+TGG | + | chr6_3:6169699-6169718 | Msa0935590:intron | 45.0% |
| ! | TATTTAGGGCCCGTTTGGAT+TGG | + | chr6_3:6169704-6169723 | Msa0935590:intron | 45.0% |
| AACTAAGGGACCGTTTGGAT+TGG | - | chr6_3:6169908-6169927 | None:intergenic | 45.0% | |
| TGCATAACTAAGGGACCGTT+TGG | - | chr6_3:6169913-6169932 | None:intergenic | 45.0% | |
| !! | GAGGAGTATCTTGTCTCACA+TGG | + | chr6_3:6170823-6170842 | Msa0935590:CDS | 45.0% |
| !! | AGCAGCACTGATAGAGTAAG+TGG | - | chr6_3:6170860-6170879 | None:intergenic | 45.0% |
| ! | CAGTGCTGCTCATGTAAATG+CGG | + | chr6_3:6170870-6170889 | Msa0935590:CDS | 45.0% |
| ! | AGTGCTGCTCATGTAAATGC+GGG | + | chr6_3:6170871-6170890 | Msa0935590:CDS | 45.0% |
| ATGGCTGACACCTATACATG+TGG | - | chr6_3:6171070-6171089 | None:intergenic | 45.0% | |
| CATGTATAGGTGTCAGCCAT+CGG | + | chr6_3:6171070-6171089 | Msa0935590:intron | 45.0% | |
| ! | TTGAAGGTGTGTTCAGTGTC+CGG | - | chr6_3:6171102-6171121 | None:intergenic | 45.0% |
| !!! | CCCTTGTTTTGTGTGTCCAA+AGG | + | chr6_3:6171152-6171171 | Msa0935590:intron | 45.0% |
| GCCTTTGGACACACAAAACA+AGG | - | chr6_3:6171156-6171175 | None:intergenic | 45.0% | |
| ! | GCTTATGCCATTTGTGTCTC+TGG | + | chr6_3:6171480-6171499 | Msa0935590:intron | 45.0% |
| TTCAGGAGGAGGAACTGTTA+TGG | + | chr6_3:6171568-6171587 | Msa0935590:CDS | 45.0% | |
| CAGGATCCATATTCTTACGG+AGG | + | chr6_3:6171841-6171860 | Msa0935590:intron | 45.0% | |
| ! | CACACTAGCATCAAGTTGTG+TGG | - | chr6_3:6171911-6171930 | None:intergenic | 45.0% |
| GGAGCTTGGACGTAATCTTA+TGG | - | chr6_3:6172507-6172526 | None:intergenic | 45.0% | |
| !! | AGTTTGATGGTGCGTGCAAA+GGG | + | chr6_3:6172748-6172767 | Msa0935590:CDS | 45.0% |
| CTATACTGCGTGCTGAAGAT+GGG | + | chr6_3:6172796-6172815 | Msa0935590:CDS | 45.0% | |
| TAGGTCTATCGTTTGCGTGA+AGG | + | chr6_3:6172911-6172930 | Msa0935590:intron | 45.0% | |
| TATCGTTTGCGTGAAGGAGT+TGG | + | chr6_3:6172917-6172936 | Msa0935590:CDS | 45.0% | |
| AACCTGATTGCACACAAGCA+GGG | - | chr6_3:6173041-6173060 | None:intergenic | 45.0% | |
| AAACCTGATTGCACACAAGC+AGG | - | chr6_3:6173042-6173061 | None:intergenic | 45.0% | |
| AGGGTACACTCTTAGTCACT+TGG | + | chr6_3:6173477-6173496 | Msa0935590:intron | 45.0% | |
| AACCTTGGAGATTTAACGCG+CGG | - | chr6_3:6173785-6173804 | None:intergenic | 45.0% | |
| ! | TTGAACTTTTGCAGCTGGTC+AGG | + | chr6_3:6174070-6174089 | Msa0935590:intron | 45.0% |
| CTCCCAAACAGTCTCATGAG+TGG | - | chr6_3:6170380-6170399 | None:intergenic | 50.0% | |
| GAGCTCCATTTAGGCCAGTT+TGG | - | chr6_3:6170620-6170639 | None:intergenic | 50.0% | |
| AGCTTCACCAGAAACCTGCT+TGG | - | chr6_3:6170764-6170783 | None:intergenic | 50.0% | |
| GACGACATGCAGTGCTTCAT+AGG | - | chr6_3:6171008-6171027 | None:intergenic | 50.0% | |
| CAGGATCCATGTTCTTCAGG+AGG | + | chr6_3:6171554-6171573 | Msa0935590:intron | 50.0% | |
| GATCCATGTTCTTCAGGAGG+AGG | + | chr6_3:6171557-6171576 | Msa0935590:CDS | 50.0% | |
| GTTCCTCCTCCTGAAGAACA+TGG | - | chr6_3:6171563-6171582 | None:intergenic | 50.0% | |
| !! | TATCGGTGTCGGATACGTGT+CGG | + | chr6_3:6171713-6171732 | Msa0935590:intron | 50.0% |
| CGGGCAATTAATAGGGAGCT+TGG | - | chr6_3:6172521-6172540 | None:intergenic | 50.0% | |
| !! | GAGTTTGATGGTGCGTGCAA+AGG | + | chr6_3:6172747-6172766 | Msa0935590:CDS | 50.0% |
| GCTATACTGCGTGCTGAAGA+TGG | + | chr6_3:6172795-6172814 | Msa0935590:CDS | 50.0% | |
| AACCGCGCGTTAAATCTCCA+AGG | + | chr6_3:6173780-6173799 | Msa0935590:CDS | 50.0% | |
| CGTGTCGGACACCGATACTT+TGG | + | chr6_3:6171728-6171747 | Msa0935590:intron | 55.0% | |
| AAAGGGAATCCTGGACCAGC+TGG | + | chr6_3:6172765-6172784 | Msa0935590:CDS | 55.0% | |
| AGTATAGCTCCAGCACCAGC+TGG | - | chr6_3:6172783-6172802 | None:intergenic | 55.0% | |
| GCAGGGAGTCTCCTTGAACA+CGG | - | chr6_3:6173024-6173043 | None:intergenic | 55.0% | |
| CTCCCTGCTTGTGTGCAATC+AGG | + | chr6_3:6173036-6173055 | Msa0935590:CDS | 55.0% | |
| TGTCAGCCATCGGCATGTGC+CGG | + | chr6_3:6171080-6171099 | Msa0935590:intron | 60.0% | |
| GGTGCGTGCAAAGGGAATCC+TGG | + | chr6_3:6172756-6172775 | Msa0935590:CDS | 60.0% | |
| AATCCTGGACCAGCTGGTGC+TGG | + | chr6_3:6172771-6172790 | Msa0935590:CDS | 60.0% | |
| GCGTGCTGAAGATGGGAGCA+AGG | + | chr6_3:6172803-6172822 | Msa0935590:CDS | 60.0% | |
| CAGTGTCCGGCACATGCCGA+TGG | - | chr6_3:6171089-6171108 | None:intergenic | 65.0% | |
| GCTCCAGCACCAGCTGGTCC+AGG | - | chr6_3:6172777-6172796 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 6169205 | 6174382 | 6169205 | ID=Msa0935590;Name=Msa0935590 |
| chr6_3 | mRNA | 6169205 | 6174382 | 6169205 | ID=Msa0935590-mRNA-1;Parent=Msa0935590;Name=Msa0935590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=154|1|1|1|0.9|0.81|11|264|317 |
| chr6_3 | exon | 6169205 | 6169348 | 6169205 | ID=Msa0935590-mRNA-1:exon:1921;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6169460 | 6169568 | 6169460 | ID=Msa0935590-mRNA-1:exon:1922;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6170769 | 6170927 | 6170769 | ID=Msa0935590-mRNA-1:exon:1923;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6171557 | 6171640 | 6171557 | ID=Msa0935590-mRNA-1:exon:1924;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6171844 | 6171927 | 6171844 | ID=Msa0935590-mRNA-1:exon:1925;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6172042 | 6172137 | 6172042 | ID=Msa0935590-mRNA-1:exon:1926;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6172732 | 6172824 | 6172732 | ID=Msa0935590-mRNA-1:exon:1927;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6172914 | 6173057 | 6172914 | ID=Msa0935590-mRNA-1:exon:1928;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6173372 | 6173479 | 6173372 | ID=Msa0935590-mRNA-1:exon:1929;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6173750 | 6173801 | 6173750 | ID=Msa0935590-mRNA-1:exon:1930;Parent=Msa0935590-mRNA-1 |
| chr6_3 | exon | 6174084 | 6174382 | 6174084 | ID=Msa0935590-mRNA-1:exon:1931;Parent=Msa0935590-mRNA-1 |
| chr6_3 | five_prime_UTR | 6169205 | 6169348 | 6169205 | ID=Msa0935590-mRNA-1:five_prime_utr;Parent=Msa0935590-mRNA-1 |
| chr6_3 | five_prime_UTR | 6169460 | 6169469 | 6169460 | ID=Msa0935590-mRNA-1:five_prime_utr;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6169470 | 6169568 | 6169470 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6170769 | 6170927 | 6170769 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6171557 | 6171640 | 6171557 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6171844 | 6171927 | 6171844 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6172042 | 6172137 | 6172042 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6172732 | 6172824 | 6172732 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6172914 | 6173057 | 6172914 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6173372 | 6173479 | 6173372 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6173750 | 6173801 | 6173750 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | CDS | 6174084 | 6174118 | 6174084 | ID=Msa0935590-mRNA-1:cds;Parent=Msa0935590-mRNA-1 |
| chr6_3 | three_prime_UTR | 6174119 | 6174382 | 6174119 | ID=Msa0935590-mRNA-1:three_prime_utr;Parent=Msa0935590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
