AlfalfaGEDB | Msa0938030

M. sativa cultivar zhongmu-4 / Msa0938030

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944
PFAM: PF02298.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0938030	sp\|Q39131\|LAML_ARATH	56.364	110	44	3	2	108	64	172	1.11e-39	132

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0938030	Q2HW94	96.262	107	4	0	2	108	73	179	1.85e-72	222

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0180930	Msa0938030	0.800118	1.674267e-48	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0938030	MtrunA17_Chr6g0453921	96.262	107	4	0	2	108	73	179	3.56e-76	222
Msa0938030	MtrunA17_Chr6g0453801	83.099	71	12	0	2	72	70	140	4.13e-41	133
Msa0938030	MtrunA17_Chr3g0144921	44.118	102	52	3	2	101	66	164	1.52e-19	78.6
Msa0938030	MtrunA17_Chr5g0440791	47.500	80	41	1	2	80	20	99	2.14e-19	77.0
Msa0938030	MtrunA17_Chr5g0440804	50.000	76	37	1	6	80	69	144	2.51e-18	75.5
Msa0938030	MtrunA17_Chr5g0440711	51.351	74	35	1	6	78	69	142	8.80e-18	73.6
Msa0938030	MtrunA17_Chr6g0453791	40.566	106	59	2	2	107	66	167	2.25e-16	70.5
Msa0938030	MtrunA17_Chr4g0001571	37.113	97	52	2	2	91	64	158	3.28e-13	62.0

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0938030	AT5G15350.1	56.364	110	44	3	2	108	64	172	1.13e-40	132
Msa0938030	AT4G12880.2	58.730	63	26	0	2	64	26	88	7.34e-23	85.5
Msa0938030	AT4G12880.1	58.730	63	26	0	2	64	64	126	4.05e-22	84.7
Msa0938030	AT3G01070.1	60.000	100	35	4	2	96	62	161	4.13e-20	80.1
Msa0938030	AT2G27035.1	45.570	79	40	2	2	80	64	139	1.91e-16	70.9

Showing 1 to 5 of 5 entries

Previous1Next

Find 14 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCACCACCAAAAGCTGCAC+CGG	0.566963	6_3:-9542057	Msa0938030:CDS
AGATTTGTCCTTTAGAAGAA+AGG	0.430408	6_3:+9542015	None:intergenic
CACAATTGGACAACTGGAGC+TGG	0.466848	6_3:-9542185	Msa0938030:CDS
CAGACCATCCACTTCACAAT+TGG	0.402160	6_3:-9542199	Msa0938030:CDS
CCACTTCACAATTGGACAAC+TGG	0.404662	6_3:-9542191	Msa0938030:CDS
CCAGTTGTCCAATTGTGAAG+TGG	0.610427	6_3:+9542191	None:intergenic
CGCCATTACTATTTCATCAG+TGG	0.560423	6_3:-9542134	Msa0938030:CDS
GCAACATTCCTTTCTTCTAA+AGG	0.414486	6_3:-9542023	Msa0938030:CDS
GGGATTCATTCATTTATTTA+TGG	0.202648	6_3:-9541956	Msa0938030:CDS
TAATGGCGAGTCACGTTCAA+TGG	0.474693	6_3:+9542149	None:intergenic

Showing 1 to 10 of 14 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTCATTTGCAAATTAAGCCA+TGG	+	chr6_3:9541989-9542008	None:intergenic	30.0%
AATCTTTCAAGCATTCTCAA+GGG	+	chr6_3:9542458-9542477	None:intergenic	30.0%
TAATCTTTCAAGCATTCTCA+AGG	+	chr6_3:9542459-9542478	None:intergenic	30.0%
TCACTTCTAGTACATTCATT+TGG	+	chr6_3:9542571-9542590	None:intergenic	30.0%
TTCATTTGCAAATTAAGCCA+TGG	+	chr6_3:9541989-9542008	None:intergenic	30.0%
AATCTTTCAAGCATTCTCAA+GGG	+	chr6_3:9542458-9542477	None:intergenic	30.0%
TAATCTTTCAAGCATTCTCA+AGG	+	chr6_3:9542459-9542478	None:intergenic	30.0%
TCACTTCTAGTACATTCATT+TGG	+	chr6_3:9542571-9542590	None:intergenic	30.0%
TATGTCCTAAGTACACTTGT+TGG	-	chr6_3:9542388-9542407	Msa0938030:intron	35.0%
TGCCACTGATGAAATAGTAA+TGG	+	chr6_3:9542688-9542707	None:intergenic	35.0%

Showing 1 to 10 of 114 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	9541953	9542886	9541953	ID=Msa0938030;Name=Msa0938030
chr6_3	mRNA	9541953	9542886	9541953	ID=Msa0938030-mRNA-1;Parent=Msa0938030;Name=Msa0938030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|108
chr6_3	exon	9542882	9542886	9542882	ID=Msa0938030-mRNA-1:exon:3087;Parent=Msa0938030-mRNA-1
chr6_3	exon	9541953	9542274	9541953	ID=Msa0938030-mRNA-1:exon:3086;Parent=Msa0938030-mRNA-1
chr6_3	CDS	9542882	9542886	9542882	ID=Msa0938030-mRNA-1:cds;Parent=Msa0938030-mRNA-1
chr6_3	CDS	9541953	9542274	9541953	ID=Msa0938030-mRNA-1:cds;Parent=Msa0938030-mRNA-1

Gene Sequence	>Msa0938030 ATGAAGAACCAAATGAATGTACTAGAAGTGAACAAAACAGATTATGAAACTTGCAACTCAGACCATCCACTTCACAATTGGACAACTGGAGCTGGAAGAGACGTCGTTCCATTGAACGTGACTCGCCATTACTATTTCATCAGTGGCAAAGGATTTTGCTTTGGTGGTATGAAGTTAGCCGTTCGTGTTGAAAATCTACCACCACCACCAAAAGCTGCACCGGAAAAAGCTAGTGCAACATTCCTTTCTTCTAAAGGACAAATCTTTCTCATGCCTATTGTTTTTGCTATTGGTGCAGCATGGGATTCATTCATTTATTTATGGTAA
Protein sequence	>Msa0938030 MKNQMNVLEVNKTDYETCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCFGGMKLAVRVENLPPPPKAAPEKASATFLSSKGQIFLMPIVFAIGAAWDSFIYLW*