AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0939260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0939260 MtrunA17_Chr6g0454851 98.571 420 6 0 1 420 711 1130 0.0 845
Msa0939260 MtrunA17_Chr6g0454951 80.292 411 81 0 1 411 705 1115 0.0 664
Msa0939260 MtrunA17_Chr6g0455211 76.886 411 85 1 1 411 663 1063 0.0 644
Msa0939260 MtrunA17_Chr6g0454821 73.966 411 89 3 1 401 659 1061 0.0 575
Msa0939260 MtrunA17_Chr6g0455131 71.358 405 106 2 1 395 703 1107 0.0 570
Msa0939260 MtrunA17_Chr7g0257531 72.319 401 101 1 1 401 278 668 0.0 567
Msa0939260 MtrunA17_Chr6g0455551 71.533 411 107 3 1 401 694 1104 0.0 557
Msa0939260 MtrunA17_Chr6g0454961 71.602 412 106 4 1 401 645 1056 0.0 554
Msa0939260 MtrunA17_Chr6g0454971 70.127 395 110 2 1 395 659 1045 0.0 554
Msa0939260 MtrunA17_Chr4g0005591 64.203 433 146 1 1 424 687 1119 0.0 552
Msa0939260 MtrunA17_Chr6g0454831 68.150 427 121 5 1 413 618 1043 0.0 536
Msa0939260 MtrunA17_Chr6g0455251 71.139 395 99 4 1 395 748 1127 0.0 535
Msa0939260 MtrunA17_Chr6g0455251 75.862 116 28 0 1 116 631 746 1.00e-48 178
Msa0939260 MtrunA17_Chr6g0455191 70.896 402 108 1 1 393 927 1328 1.84e-180 539
Msa0939260 MtrunA17_Chr4g0005851 64.578 415 139 3 1 408 648 1061 4.63e-178 526
Msa0939260 MtrunA17_Chr4g0005871 63.614 415 132 4 1 407 744 1147 1.05e-174 520
Msa0939260 MtrunA17_Chr4g0005891 65.133 413 135 1 1 404 659 1071 5.90e-171 508
Msa0939260 MtrunA17_Chr7g0234901 57.908 411 161 4 1 401 136 544 2.80e-148 434
Msa0939260 MtrunA17_Chr6g0455031 62.864 412 123 6 1 395 636 1034 3.99e-147 445
Msa0939260 MtrunA17_Chr7g0255681 60.891 404 146 4 1 394 1628 2029 6.12e-147 461
Msa0939260 MtrunA17_Chr4g0010711 60.050 398 156 2 3 399 1132 1527 3.01e-145 451
Msa0939260 MtrunA17_Chr6g0455181 66.366 333 92 3 1 333 11 323 1.93e-141 407
Msa0939260 MtrunA17_Chr6g0454871 77.903 267 49 1 1 267 11 267 7.40e-139 398
Msa0939260 MtrunA17_Chr6g0454911 69.231 273 71 2 146 418 1 260 4.51e-128 370
Msa0939260 MtrunA17_Chr4g0009141 53.398 412 165 7 1 401 1136 1531 1.18e-126 402
Msa0939260 MtrunA17_Chr4g0009101 52.844 422 170 6 1 411 1154 1557 2.71e-125 398
Msa0939260 MtrunA17_Chr4g0009241 54.369 412 160 4 1 411 1161 1545 1.56e-124 395
Msa0939260 MtrunA17_Chr4g0009171 53.398 412 165 7 1 401 1341 1736 2.69e-124 396
Msa0939260 MtrunA17_Chr4g0009171 62.963 135 48 2 1 135 614 746 2.83e-42 159
Msa0939260 MtrunA17_Chr4g0009041 52.771 415 165 7 1 401 1122 1519 5.22e-124 394
Msa0939260 MtrunA17_Chr4g0009401 53.056 409 164 5 6 401 1120 1513 1.58e-121 387
Msa0939260 MtrunA17_Chr4g0009361 51.716 408 166 7 1 392 126 518 2.46e-120 365
Msa0939260 MtrunA17_Chr4g0009301 49.764 424 184 6 1 411 1154 1561 1.39e-119 382
Msa0939260 MtrunA17_Chr8g0370511 48.737 396 190 4 1 394 619 1003 4.47e-115 361
Msa0939260 MtrunA17_Chr2g0296451 48.259 402 186 5 1 394 135 522 3.68e-114 346
Msa0939260 MtrunA17_Chr5g0420331 46.210 409 205 5 1 407 620 1015 1.01e-112 354
Msa0939260 MtrunA17_Chr5g0420341 46.210 409 205 5 1 407 620 1015 1.35e-112 354
Msa0939260 MtrunA17_Chr8g0339021 45.232 409 209 5 1 407 609 1004 2.01e-110 348
Msa0939260 MtrunA17_Chr8g0338841 45.844 397 183 3 1 396 84 449 1.09e-107 327
Msa0939260 MtrunA17_Chr8g0338981 46.929 407 196 7 1 401 617 1009 1.47e-107 342
Msa0939260 MtrunA17_Chr5g0414761 47.291 406 195 8 1 401 405 796 2.49e-106 335
Msa0939260 MtrunA17_Chr8g0339011 48.403 407 190 9 1 401 613 1005 2.98e-106 338
Msa0939260 MtrunA17_Chr8g0338901 45.320 406 204 6 1 401 640 1032 1.03e-105 337
Msa0939260 MtrunA17_Chr8g0338881 45.169 445 210 9 4 425 651 1084 4.57e-105 337
Msa0939260 MtrunA17_Chr4g0014831 82.587 201 35 0 1 201 404 604 4.80e-103 319
Msa0939260 MtrunA17_Chr3g0085731 46.944 409 186 5 1 401 633 1018 5.43e-102 328
Msa0939260 MtrunA17_Chr8g0339031 44.581 406 203 5 1 401 629 1017 4.01e-100 322
Msa0939260 MtrunA17_Chr7g0223531 44.750 400 202 4 10 401 638 1026 1.94e-93 303
Msa0939260 MtrunA17_Chr6g0455221 63.707 259 79 4 146 395 866 1118 5.74e-93 303
Msa0939260 MtrunA17_Chr6g0455221 77.358 159 36 0 1 159 624 782 7.94e-74 250
Msa0939260 MtrunA17_Chr5g0430541 42.424 396 201 7 1 394 143 513 3.19e-92 290
Msa0939260 MtrunA17_Chr3g0135541 55.147 272 91 3 184 424 39 310 2.26e-88 271
Msa0939260 MtrunA17_Chr8g0352221 43.424 403 162 5 1 401 589 927 3.96e-85 281
Msa0939260 MtrunA17_Chr4g0009011 48.265 317 135 6 96 401 1 299 5.59e-85 263
Msa0939260 MtrunA17_Chr3g0135571 69.784 139 42 0 269 407 1 139 1.50e-65 207
Msa0939260 MtrunA17_Chr3g0135511 69.065 139 43 0 269 407 1 139 2.20e-64 204
Msa0939260 MtrunA17_Chr4g0014821 60.156 128 50 1 275 402 3 129 3.25e-51 170
Msa0939260 MtrunA17_Chr8g0352211 33.165 395 169 9 4 396 634 935 2.76e-48 177
Msa0939260 MtrunA17_Chr3g0114381 37.209 258 147 4 146 401 1 245 1.16e-47 165
Msa0939260 MtrunA17_Chr6g0454861 71.028 107 28 1 312 418 1 104 8.64e-45 151
Msa0939260 MtrunA17_Chr8g0338811 65.741 108 37 0 32 139 1 108 7.30e-43 146
Msa0939260 MtrunA17_Chr4g0005601 72.222 90 25 0 1 90 68 157 3.54e-39 138
Msa0939260 MtrunA17_Chr3g0085531 35.514 214 123 3 189 401 9 208 8.32e-34 129
Msa0939260 MtrunA17_Chr8g0343791 45.181 166 73 5 95 257 2 152 1.17e-31 119
Msa0939260 MtrunA17_Chr6g0454931 71.951 82 23 0 1 82 686 767 5.20e-28 117
Msa0939260 MtrunA17_Chr8g0338931 40.310 129 75 2 274 401 21 148 1.78e-26 107
Msa0939260 MtrunA17_Chr6g0454881 65.217 69 24 0 333 401 1 69 2.15e-26 102
Msa0939260 MtrunA17_Chr4g0009211 51.087 92 44 1 304 394 1 92 2.33e-23 95.1
Msa0939260 MtrunA17_Chr7g0248201 47.368 114 59 1 3 116 17 129 8.03e-22 93.6
Msa0939260 MtrunA17_Chr8g0338801 39.167 120 71 2 279 396 85 204 1.54e-21 94.7
Msa0939260 MtrunA17_Chr7g0248121 46.610 118 62 1 1 118 626 742 2.54e-21 97.1
Msa0939260 MtrunA17_Chr4g0008981 45.455 99 53 1 304 401 1 99 4.45e-21 89.4
Msa0939260 MtrunA17_Chr7g0248511 47.414 116 60 1 1 116 632 746 2.57e-20 94.0
Msa0939260 MtrunA17_Chr7g0248521 45.763 118 63 1 1 118 625 741 5.35e-20 92.8
Msa0939260 MtrunA17_Chr3g0085541 60.526 76 28 1 1 76 632 705 1.79e-19 90.9
Msa0939260 MtrunA17_Chr3g0135521 66.176 68 23 0 184 251 45 112 9.31e-19 83.2
Msa0939260 MtrunA17_Chr3g0135591 66.176 68 23 0 184 251 45 112 9.31e-19 83.2
Msa0939260 MtrunA17_Chr7g0256881 41.270 126 67 2 1 126 617 735 2.83e-18 87.8
Msa0939260 MtrunA17_Chr7g0256881 37.956 137 83 2 1 136 687 822 1.49e-15 79.3
Msa0939260 MtrunA17_Chr8g0348541 43.966 116 64 1 1 116 631 745 4.47e-18 87.0
Msa0939260 MtrunA17_Chr8g0348541 37.594 133 81 2 1 132 701 832 1.16e-13 73.2
Msa0939260 MtrunA17_Chr4g0041441 25.519 337 214 10 1 323 614 927 6.69e-18 86.7
Msa0939260 MtrunA17_Chr8g0354681 38.281 128 75 2 4 129 635 760 9.57e-18 85.9
Msa0939260 MtrunA17_Chr8g0343781 45.455 77 42 0 312 388 5 81 1.13e-16 74.7
Msa0939260 MtrunA17_Chr6g0479651 28.882 322 181 11 1 300 622 917 7.18e-16 80.1
Msa0939260 MtrunA17_Chr8g0363851 36.641 131 81 1 2 130 463 593 2.64e-15 78.6
Msa0939260 MtrunA17_Chr6g0478451 40.708 113 65 1 4 116 620 730 3.37e-15 78.2
Msa0939260 MtrunA17_Chr8g0354711 35.938 128 78 2 4 129 627 752 5.38e-14 74.3
Msa0939260 MtrunA17_Chr8g0354721 34.109 129 79 3 4 129 631 756 2.69e-13 72.4
Msa0939260 MtrunA17_Chr4g0042011 42.169 83 48 0 1 83 631 713 3.27e-13 72.0
Msa0939260 MtrunA17_Chr8g0354701 33.333 129 80 3 4 129 632 757 4.59e-13 71.6
Msa0939260 MtrunA17_Chr6g0480051 40.870 115 66 1 1 115 390 502 4.74e-13 71.2
Msa0939260 MtrunA17_Chr8g0368251 35.652 115 72 1 1 115 610 722 5.32e-13 71.2
Msa0939260 MtrunA17_Chr4g0041431 40.964 83 49 0 1 83 445 527 8.59e-13 70.5
Msa0939260 MtrunA17_Chr6g0485991 43.373 83 47 0 1 83 627 709 1.04e-12 70.5
Msa0939260 MtrunA17_Chr6g0455141 60.465 43 17 0 365 407 1 43 1.06e-12 63.5
Msa0939260 MtrunA17_Chr8g0353371 35.398 113 71 1 4 116 643 753 1.71e-12 69.7
Msa0939260 MtrunA17_Chr4g0041611 40.385 104 60 1 1 102 632 735 1.88e-12 69.3
Msa0939260 MtrunA17_Chr6g0482511 34.921 126 80 1 4 129 659 782 2.97e-12 68.9
Msa0939260 MtrunA17_Chr6g0486221 44.578 83 46 0 1 83 632 714 5.06e-12 68.2
Msa0939260 MtrunA17_Chr2g0330121 24.242 363 234 8 1 323 450 811 8.28e-12 67.4
Msa0939260 MtrunA17_Chr1g0146421 32.558 129 85 1 1 129 608 734 8.45e-12 67.4
Msa0939260 MtrunA17_Chr2g0319851 34.921 126 71 2 4 118 662 787 8.52e-12 67.4
Msa0939260 MtrunA17_Chr2g0319851 33.846 130 82 2 4 129 734 863 7.43e-11 64.3
Msa0939260 MtrunA17_Chr8g0363891 30.435 207 125 2 6 212 2 189 9.98e-12 67.0
Msa0939260 MtrunA17_Chr4g0041241 40.964 83 49 0 1 83 628 710 1.15e-11 67.0
Msa0939260 MtrunA17_Chr4g0006771 33.099 142 90 2 1 142 614 750 1.42e-11 66.6
Msa0939260 MtrunA17_Chr6g0482111 30.328 122 84 1 1 122 625 745 1.82e-11 66.6
Msa0939260 MtrunA17_Chr3g0081531 34.483 116 75 1 1 116 615 729 1.95e-11 66.2
Msa0939260 MtrunA17_Chr6g0479671 31.783 129 86 1 1 129 613 739 2.24e-11 66.2
Msa0939260 MtrunA17_Chr6g0486481 43.373 83 47 0 1 83 627 709 2.65e-11 65.9
Msa0939260 MtrunA17_Chr6g0486361 43.373 83 47 0 1 83 624 706 2.68e-11 65.9
Msa0939260 MtrunA17_Chr6g0480321 35.652 115 72 1 1 115 469 581 2.90e-11 65.9
Msa0939260 MtrunA17_Chr6g0479001 23.077 299 202 6 4 299 601 874 3.24e-11 65.5
Msa0939260 MtrunA17_Chr3g0084841 30.303 132 91 1 1 132 628 758 8.62e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0939260 AT5G36930.2 26.126 444 284 13 4 405 625 1066 2.65e-26 112
Msa0939260 AT5G36930.3 26.126 444 284 13 4 405 622 1063 2.97e-26 112
Msa0939260 AT5G36930.4 26.126 444 284 13 4 405 622 1063 3.01e-26 112
Msa0939260 AT5G36930.1 26.126 444 284 13 4 405 622 1063 3.01e-26 112
Msa0939260 AT1G27180.1 40.625 128 76 0 2 129 843 970 2.35e-19 91.7
Msa0939260 AT1G27180.3 40.625 128 76 0 2 129 681 808 2.38e-19 91.3
Msa0939260 AT1G27180.2 40.625 128 76 0 2 129 681 808 2.53e-19 91.3
Msa0939260 AT1G27180.5 40.625 128 76 0 2 129 679 806 2.77e-19 91.3
Msa0939260 AT1G27180.8 40.625 128 76 0 2 129 679 806 2.77e-19 91.3
Msa0939260 AT1G27180.7 40.625 128 76 0 2 129 505 632 2.96e-19 91.3
Msa0939260 AT1G27180.6 40.625 128 76 0 2 129 505 632 2.96e-19 91.3
Msa0939260 AT1G27180.4 40.625 128 76 0 2 129 505 632 2.96e-19 91.3
Msa0939260 AT1G27170.2 38.281 128 79 0 2 129 670 797 1.16e-15 80.1
Msa0939260 AT1G27170.1 38.281 128 79 0 2 129 670 797 1.20e-15 80.1
Msa0939260 AT4G12020.1 39.655 116 67 2 1 116 1327 1439 4.79e-13 72.0
Msa0939260 AT4G12020.9 39.655 116 67 2 1 116 1327 1439 4.79e-13 72.0
Msa0939260 AT4G12020.7 39.655 116 67 2 1 116 1319 1431 5.04e-13 72.0
Msa0939260 AT4G12020.2 39.655 116 67 2 1 116 1327 1439 5.09e-13 72.0
Msa0939260 AT4G12020.4 39.655 116 67 2 1 116 1319 1431 5.13e-13 72.0
Msa0939260 AT4G12020.10 39.655 116 67 2 1 116 1319 1431 5.36e-13 71.6
Msa0939260 AT4G12020.3 39.655 116 67 2 1 116 1327 1439 5.60e-13 71.6
Msa0939260 AT4G12020.6 39.655 116 67 2 1 116 1319 1431 5.75e-13 71.6
Msa0939260 AT4G12020.8 39.655 116 67 2 1 116 1319 1431 5.75e-13 71.6
Msa0939260 AT4G12020.5 39.655 116 67 2 1 116 1252 1364 5.82e-13 71.6
Msa0939260 AT2G17060.2 36.090 133 64 3 1 113 727 858 2.19e-11 66.6
Msa0939260 AT5G44510.4 33.913 230 127 9 1 213 656 877 2.25e-11 66.6
Msa0939260 AT5G44510.3 33.913 230 127 9 1 213 656 877 2.40e-11 66.6
Msa0939260 AT5G44510.2 33.913 230 127 9 1 213 656 877 2.52e-11 66.2
Msa0939260 AT2G17060.1 36.090 133 64 3 1 113 727 858 2.69e-11 66.2
Msa0939260 AT5G44510.1 33.913 230 127 9 1 213 656 877 2.93e-11 66.2
Msa0939260 AT4G12010.1 37.097 124 74 2 4 127 645 764 3.22e-11 66.2
Msa0939260 AT5G45200.1 33.083 133 68 2 1 113 708 839 5.21e-11 65.5
Msa0939260 AT5G45200.2 33.083 133 68 2 1 113 464 595 6.08e-11 65.1
Msa0939260 AT5G45200.3 33.083 133 68 2 1 113 708 839 7.46e-11 64.7

Find 97 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAAACCCTCATTCTTTC+TGG 0.115647 6_3:+11306519 Msa0939260:CDS
TCATGATGCTGCAATAATTT+TGG 0.150559 6_3:+11306902 Msa0939260:CDS
TTCCAAGTCTTCAAAGTCTT+TGG 0.229736 6_3:+11306850 Msa0939260:CDS
CTTATAATCTGTGGCATATA+AGG 0.233276 6_3:-11306928 None:intergenic
CTTATATGCCACAGATTATA+AGG 0.235516 6_3:+11306929 Msa0939260:CDS
AGTTCATGGGAACTACTATT+TGG 0.283921 6_3:-11306807 None:intergenic
TGAAATTCTTCTAATAGATT+TGG 0.284161 6_3:+11306443 Msa0939260:CDS
AATGACCTCCACTTTGTTAC+CGG 0.312034 6_3:-11308263 None:intergenic
TCCAAGTCTTCAAAGTCTTT+GGG 0.332059 6_3:+11306851 Msa0939260:CDS
TTGAATTAAAAGAGACTTGA+AGG 0.343692 6_3:-11307024 None:intergenic
ATTGTATATGATGAACAAAT+TGG 0.349103 6_3:+11308331 Msa0939260:CDS
TGAAAACCCTCATTCTTTCT+GGG 0.353784 6_3:+11306520 Msa0939260:CDS
CCACTTGATATTATGTTAGC+TGG 0.360835 6_3:-11308124 None:intergenic
CTTTCAAAATATTGGTGACT+TGG 0.362766 6_3:-11307061 None:intergenic
GTTAGCCTTCGTAGCCTTCC+AGG 0.367656 6_3:+11306474 Msa0939260:CDS
GAATGAAAGGTTAACCAATC+TGG 0.372011 6_3:-11308016 None:intergenic
TTGAAGACTTGGAAGGTACT+TGG 0.384417 6_3:-11306841 None:intergenic
TTCAACTTATAGATGCTTCC+TGG 0.388070 6_3:-11306492 None:intergenic
CTTTCATTCTGAAGGTTCTT+CGG 0.388079 6_3:+11308030 Msa0939260:CDS
TTCCGTCTATCATCTGGTCT+TGG 0.397033 6_3:+11306709 Msa0939260:CDS
TTATATGCCACAGATTATAA+GGG 0.417266 6_3:+11306930 Msa0939260:CDS
TTAGGCATGTATGAAAAGTC+TGG 0.420022 6_3:-11306351 None:intergenic
AGTACCAGCTTCTCAAGATT+AGG 0.421935 6_3:-11306369 None:intergenic
CCACTGATGGTTATCCAGAT+TGG 0.426503 6_3:+11308002 Msa0939260:CDS
TCAAGCTACGGCCTTCCACT+TGG 0.434514 6_3:-11308069 None:intergenic
CACTTGATATTATGTTAGCT+GGG 0.442894 6_3:-11308123 None:intergenic
TGGAAATCGATAATAGTTCA+TGG 0.443270 6_3:-11306821 None:intergenic
ACCCAAAGACTTTGAAGACT+TGG 0.445626 6_3:-11306852 None:intergenic
CATCACGTGAAAATCCTTCA+TGG 0.456552 6_3:-11306683 None:intergenic
ATGTGTTTCCGTCTATCATC+TGG 0.464040 6_3:+11306703 Msa0939260:CDS
GGAAGAGGACATAGAACAAA+TGG 0.466739 6_3:+11306563 Msa0939260:CDS
TTTGAAAGAGAAAATTGTAC+AGG 0.471112 6_3:+11307076 Msa0939260:CDS
TTTGACCTGACTACTGAAAA+GGG 0.476598 6_3:-11306633 None:intergenic
AGGGATGAGAGATTATTTGT+TGG 0.480685 6_3:-11306738 None:intergenic
ATTTCTCTATGTGGCCATGA+AGG 0.486288 6_3:+11306669 Msa0939260:CDS
CATGCCTAATCTTGAGAAGC+TGG 0.487208 6_3:+11306365 Msa0939260:CDS
TTGAAGATGAGGAGAGCCAG+AGG 0.492087 6_3:+11308221 Msa0939260:CDS
TCTGAGGTTTCTCCTAGCAT+TGG 0.493923 6_3:+11306411 Msa0939260:CDS
TGGTTAACCTTTCATTCTGA+AGG 0.501628 6_3:+11308022 Msa0939260:CDS
ATCAATTGCAATTACATCAC+AGG 0.504440 6_3:+11306959 Msa0939260:CDS
CAAGCTACGGCCTTCCACTT+GGG 0.505181 6_3:-11308068 None:intergenic
CGAAGAACCTTCAGAATGAA+AGG 0.506104 6_3:-11308029 None:intergenic
TACAGAATATGGATCTCAAT+GGG 0.510424 6_3:+11307960 Msa0939260:intron
ATTGGATACATTTCTCTATG+TGG 0.514164 6_3:+11306660 Msa0939260:CDS
ATACAGAATATGGATCTCAA+TGG 0.522309 6_3:+11307959 Msa0939260:intron
GACATTAGATGTTTGAACTA+GGG 0.526665 6_3:-11306757 None:intergenic
CTATACTTGATATTACCCTC+TGG 0.526743 6_3:-11308237 None:intergenic
TAGGCATGTATGAAAAGTCT+GGG 0.527314 6_3:-11306350 None:intergenic
GCTCTATAAGAGTGAGGCAT+TGG 0.528315 6_3:+11308192 Msa0939260:CDS
ACATGTCAAAGGTAAACTTA+AGG 0.531416 6_3:-11306259 Msa0939250:intron
TGGAATGAATCAAAGAAAGA+TGG 0.535154 6_3:+11308400 Msa0939260:CDS
TGACATGTCTGTTCTTGCAG+AGG 0.536020 6_3:+11306274 Msa0939260:five_prime_UTR
TCACTGAGATTTCCAATGCT+AGG 0.540240 6_3:-11306423 None:intergenic
ATGACCTCCACTTTGTTACC+GGG 0.540571 6_3:-11308262 None:intergenic
TGACATTAGATGTTTGAACT+AGG 0.540576 6_3:-11306758 None:intergenic
CTGGCTCTCCTCATCTTCAA+AGG 0.547570 6_3:-11308218 None:intergenic
TTTCAAGTTCCCCAAGTGGA+AGG 0.551357 6_3:+11308058 Msa0939260:CDS
AAGCTACGGCCTTCCACTTG+GGG 0.551963 6_3:-11308067 None:intergenic
TTATACACCCAGAAAGAATG+AGG 0.557171 6_3:-11306527 None:intergenic
AATGATTGACGAGTTGGAAG+AGG 0.557668 6_3:+11306548 Msa0939260:CDS
GATTGTTTGCTCCCCACTGA+TGG 0.557997 6_3:+11307989 Msa0939260:CDS
AAGTCTTCAAAGTCTTTGGG+TGG 0.559565 6_3:+11306854 Msa0939260:CDS
ATTGGTCTCCTTTGAAGATG+AGG 0.566755 6_3:+11308210 Msa0939260:CDS
ATGTCTGTTCTTGCAGAGGA+TGG 0.567765 6_3:+11306278 Msa0939260:exon
GGAAATCGATAATAGTTCAT+GGG 0.571570 6_3:-11306820 None:intergenic
TTCAAACCCCTTATAATCTG+TGG 0.572600 6_3:-11306937 None:intergenic
ACTCTGCTTGCAAATAACAC+TGG 0.576149 6_3:+11306597 Msa0939260:CDS
ACTTATAGATGCTTCCTGGA+AGG 0.582098 6_3:-11306488 None:intergenic
GTGTATAATGATTGACGAGT+TGG 0.583641 6_3:+11306542 Msa0939260:CDS
AGATTGTCCAATGTTGTCTG+AGG 0.584838 6_3:+11306395 Msa0939260:CDS
CTCACTCTTATAGAGCTGAA+TGG 0.587836 6_3:-11308185 None:intergenic
ACTTGATATTATGTTAGCTG+GGG 0.591248 6_3:-11308122 None:intergenic
CAATCTGGATAACCATCAGT+GGG 0.592414 6_3:-11308001 None:intergenic
TGCTTCCTGGAAGGCTACGA+AGG 0.596362 6_3:-11306479 None:intergenic
GGAGAAACCTCAGACAACAT+TGG 0.602010 6_3:-11306402 None:intergenic
AAAGAAAGATGGTAAAGCAA+TGG 0.603180 6_3:+11308411 Msa0939260:CDS
TATATGCCACAGATTATAAG+GGG 0.607637 6_3:+11306931 Msa0939260:CDS
AACCAAGACCAGATGATAGA+CGG 0.610235 6_3:-11306711 None:intergenic
GCTGAATGGTGGCCTTTGTG+TGG 0.611588 6_3:-11308171 None:intergenic
CCAATCTGGATAACCATCAG+TGG 0.622581 6_3:-11308002 None:intergenic
TATAGAACCCGGTAACAAAG+TGG 0.625071 6_3:+11308255 Msa0939260:CDS
CCAGCTAACATAATATCAAG+TGG 0.626466 6_3:+11308124 Msa0939260:CDS
AAAGACTTTGAAGACTTGGA+AGG 0.627273 6_3:-11306848 None:intergenic
CAGAAAGAAAGAAAATTGAG+TGG 0.627823 6_3:+11308380 Msa0939260:CDS
TGCAAGAACAGACATGTCAA+AGG 0.634654 6_3:-11306270 None:intergenic
AATATGGATCTCAATGGGAG+CGG 0.634715 6_3:+11307965 Msa0939260:CDS
TTGGTACATCTACAGAAACA+AGG 0.642055 6_3:-11306788 None:intergenic
TGGTACATCTACAGAAACAA+GGG 0.643612 6_3:-11306787 None:intergenic
TATACACCCAGAAAGAATGA+GGG 0.644380 6_3:-11306526 None:intergenic
TGAAGATGAGGAGAGCCAGA+GGG 0.655002 6_3:+11308222 Msa0939260:CDS
ACTCTTATAGAGCTGAATGG+TGG 0.667488 6_3:-11308182 None:intergenic
CATTCAGCTCTATAAGAGTG+AGG 0.671260 6_3:+11308186 Msa0939260:CDS
AGTGTTATTTGCAAGCAGAG+TGG 0.675319 6_3:-11306595 None:intergenic
AGAACCCGGTAACAAAGTGG+AGG 0.707895 6_3:+11308258 Msa0939260:CDS
GTAATATCAAGTATAGAACC+CGG 0.708881 6_3:+11308244 Msa0939260:CDS
AGGCATGTATGAAAAGTCTG+GGG 0.733889 6_3:-11306349 None:intergenic
AATCTGGATAACCATCAGTG+GGG 0.783861 6_3:-11308000 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAATAATATACGTTA+AGG - chr6_3:11307269-11307288 None:intergenic 10.0%
!! TTTAAAAATAATATACGTTA+AGG - chr6_3:11307269-11307288 None:intergenic 10.0%
!!! AATTTTCTCTTTCAAAATAT+TGG - chr6_3:11307072-11307091 None:intergenic 15.0%
!!! TGTTTTTTTATTTTTACTAC+TGG + chr6_3:11307458-11307477 Msa0939260:intron 15.0%
!!! AAGATATAATACTTTTCATA+AGG - chr6_3:11307870-11307889 None:intergenic 15.0%
!!! ATGAAAAGTATTATATCTTT+CGG + chr6_3:11307871-11307890 Msa0939260:intron 15.0%
!!! AATTTTCTCTTTCAAAATAT+TGG - chr6_3:11307072-11307091 None:intergenic 15.0%
!!! TGTTTTTTTATTTTTACTAC+TGG + chr6_3:11307458-11307477 Msa0939260:intron 15.0%
!!! AAGATATAATACTTTTCATA+AGG - chr6_3:11307870-11307889 None:intergenic 15.0%
!!! ATGAAAAGTATTATATCTTT+CGG + chr6_3:11307871-11307890 Msa0939260:intron 15.0%
!! AAGACTCTTCAAAAAATAAA+TGG - chr6_3:11306239-11306258 Msa0939250:intron 20.0%
!! TGAAATTCTTCTAATAGATT+TGG + chr6_3:11306443-11306462 Msa0939260:CDS 20.0%
!!! AAGTCTCTTTTAATTCAAAT+GGG + chr6_3:11307029-11307048 Msa0939260:CDS 20.0%
!!! TTTGACCAGAATTTTTTTTT+TGG + chr6_3:11307656-11307675 Msa0939260:intron 20.0%
!!! TAATCCATGAATATGAATTT+TGG + chr6_3:11307687-11307706 Msa0939260:intron 20.0%
!! ATAACCAAAATTCATATTCA+TGG - chr6_3:11307694-11307713 None:intergenic 20.0%
!!! ATGAATATGAATTTTGGTTA+TGG + chr6_3:11307693-11307712 Msa0939260:intron 20.0%
!!! AAAACTTTTACACAAGATTA+TGG + chr6_3:11307772-11307791 Msa0939260:intron 20.0%
!!! TTTTCACTAACATGTTTTTA+AGG - chr6_3:11308150-11308169 None:intergenic 20.0%
!! ATTGTATATGATGAACAAAT+TGG + chr6_3:11308331-11308350 Msa0939260:CDS 20.0%
!! AAGACTCTTCAAAAAATAAA+TGG - chr6_3:11306239-11306258 Msa0939250:intron 20.0%
!! TGAAATTCTTCTAATAGATT+TGG + chr6_3:11306443-11306462 Msa0939260:CDS 20.0%
!!! AAGTCTCTTTTAATTCAAAT+GGG + chr6_3:11307029-11307048 Msa0939260:CDS 20.0%
!!! TTTGACCAGAATTTTTTTTT+TGG + chr6_3:11307656-11307675 Msa0939260:intron 20.0%
!!! TAATCCATGAATATGAATTT+TGG + chr6_3:11307687-11307706 Msa0939260:intron 20.0%
!! ATAACCAAAATTCATATTCA+TGG - chr6_3:11307694-11307713 None:intergenic 20.0%
!!! ATGAATATGAATTTTGGTTA+TGG + chr6_3:11307693-11307712 Msa0939260:intron 20.0%
!!! AAAACTTTTACACAAGATTA+TGG + chr6_3:11307772-11307791 Msa0939260:intron 20.0%
!!! TTTTCACTAACATGTTTTTA+AGG - chr6_3:11308150-11308169 None:intergenic 20.0%
!! ATTGTATATGATGAACAAAT+TGG + chr6_3:11308331-11308350 Msa0939260:CDS 20.0%
! TTATATGCCACAGATTATAA+GGG + chr6_3:11306930-11306949 Msa0939260:CDS 25.0%
! TTGAATTAAAAGAGACTTGA+AGG - chr6_3:11307027-11307046 None:intergenic 25.0%
!!! CAAGTCTCTTTTAATTCAAA+TGG + chr6_3:11307028-11307047 Msa0939260:CDS 25.0%
! TTTGAAAGAGAAAATTGTAC+AGG + chr6_3:11307076-11307095 Msa0939260:CDS 25.0%
! CTTAAGAATTCAAATGTATG+AGG - chr6_3:11307157-11307176 None:intergenic 25.0%
! TAGCAAAATTTGATAGAACT+TGG - chr6_3:11307299-11307318 None:intergenic 25.0%
!! CAAGATTATGGATCTATTTT+TGG + chr6_3:11307784-11307803 Msa0939260:intron 25.0%
! ATCTCTATTCATACAGAATA+TGG + chr6_3:11307949-11307968 Msa0939260:intron 25.0%
! TTATATGCCACAGATTATAA+GGG + chr6_3:11306930-11306949 Msa0939260:CDS 25.0%
! TTGAATTAAAAGAGACTTGA+AGG - chr6_3:11307027-11307046 None:intergenic 25.0%
!!! CAAGTCTCTTTTAATTCAAA+TGG + chr6_3:11307028-11307047 Msa0939260:CDS 25.0%
! TTTGAAAGAGAAAATTGTAC+AGG + chr6_3:11307076-11307095 Msa0939260:CDS 25.0%
! CTTAAGAATTCAAATGTATG+AGG - chr6_3:11307157-11307176 None:intergenic 25.0%
! TAGCAAAATTTGATAGAACT+TGG - chr6_3:11307299-11307318 None:intergenic 25.0%
!! CAAGATTATGGATCTATTTT+TGG + chr6_3:11307784-11307803 Msa0939260:intron 25.0%
! ATCTCTATTCATACAGAATA+TGG + chr6_3:11307949-11307968 Msa0939260:intron 25.0%
ACATGTCAAAGGTAAACTTA+AGG - chr6_3:11306262-11306281 None:intergenic 30.0%
ATTGGATACATTTCTCTATG+TGG + chr6_3:11306660-11306679 Msa0939260:CDS 30.0%
GACATTAGATGTTTGAACTA+GGG - chr6_3:11306760-11306779 None:intergenic 30.0%
TGACATTAGATGTTTGAACT+AGG - chr6_3:11306761-11306780 None:intergenic 30.0%
GGAAATCGATAATAGTTCAT+GGG - chr6_3:11306823-11306842 None:intergenic 30.0%
TGGAAATCGATAATAGTTCA+TGG - chr6_3:11306824-11306843 None:intergenic 30.0%
! TCATGATGCTGCAATAATTT+TGG + chr6_3:11306902-11306921 Msa0939260:CDS 30.0%
CTTATAATCTGTGGCATATA+AGG - chr6_3:11306931-11306950 None:intergenic 30.0%
CTTATATGCCACAGATTATA+AGG + chr6_3:11306929-11306948 Msa0939260:CDS 30.0%
TATATGCCACAGATTATAAG+GGG + chr6_3:11306931-11306950 Msa0939260:CDS 30.0%
ATCAATTGCAATTACATCAC+AGG + chr6_3:11306959-11306978 Msa0939260:CDS 30.0%
! CTTTCAAAATATTGGTGACT+TGG - chr6_3:11307064-11307083 None:intergenic 30.0%
AAACACAGACAAACATACAA+GGG - chr6_3:11307128-11307147 None:intergenic 30.0%
AATCCACTATATAACTACCA+TGG - chr6_3:11307614-11307633 None:intergenic 30.0%
TTCTGGTCAAAATATGTTCA+TGG - chr6_3:11307647-11307666 None:intergenic 30.0%
!!! CCAGAATTTTTTTTTTGGAC+CGG + chr6_3:11307661-11307680 Msa0939260:intron 30.0%
! TCATATTCATGGATTACTAC+CGG - chr6_3:11307683-11307702 None:intergenic 30.0%
!! TTTTGGCTGAATATGATTCA+TGG + chr6_3:11307801-11307820 Msa0939260:intron 30.0%
!! TCGGTGTTGAATAAATGATA+AGG + chr6_3:11307890-11307909 Msa0939260:intron 30.0%
ATACAGAATATGGATCTCAA+TGG + chr6_3:11307959-11307978 Msa0939260:intron 30.0%
TACAGAATATGGATCTCAAT+GGG + chr6_3:11307960-11307979 Msa0939260:intron 30.0%
!! ACATCATTGTTTTCAAGCTA+CGG - chr6_3:11308084-11308103 None:intergenic 30.0%
ACTTGATATTATGTTAGCTG+GGG - chr6_3:11308125-11308144 None:intergenic 30.0%
CACTTGATATTATGTTAGCT+GGG - chr6_3:11308126-11308145 None:intergenic 30.0%
GTAATATCAAGTATAGAACC+CGG + chr6_3:11308244-11308263 Msa0939260:CDS 30.0%
TGAACAAATTGGCGAAAAAT+TGG + chr6_3:11308342-11308361 Msa0939260:CDS 30.0%
! CACTCAATTTTCTTTCTTTC+TGG - chr6_3:11308382-11308401 None:intergenic 30.0%
CAGAAAGAAAGAAAATTGAG+TGG + chr6_3:11308380-11308399 Msa0939260:CDS 30.0%
TGGAATGAATCAAAGAAAGA+TGG + chr6_3:11308400-11308419 Msa0939260:CDS 30.0%
AAAGAAAGATGGTAAAGCAA+TGG + chr6_3:11308411-11308430 Msa0939260:CDS 30.0%
ACATGTCAAAGGTAAACTTA+AGG - chr6_3:11306262-11306281 None:intergenic 30.0%
ATTGGATACATTTCTCTATG+TGG + chr6_3:11306660-11306679 Msa0939260:CDS 30.0%
GACATTAGATGTTTGAACTA+GGG - chr6_3:11306760-11306779 None:intergenic 30.0%
TGACATTAGATGTTTGAACT+AGG - chr6_3:11306761-11306780 None:intergenic 30.0%
GGAAATCGATAATAGTTCAT+GGG - chr6_3:11306823-11306842 None:intergenic 30.0%
TGGAAATCGATAATAGTTCA+TGG - chr6_3:11306824-11306843 None:intergenic 30.0%
! TCATGATGCTGCAATAATTT+TGG + chr6_3:11306902-11306921 Msa0939260:CDS 30.0%
CTTATAATCTGTGGCATATA+AGG - chr6_3:11306931-11306950 None:intergenic 30.0%
CTTATATGCCACAGATTATA+AGG + chr6_3:11306929-11306948 Msa0939260:CDS 30.0%
TATATGCCACAGATTATAAG+GGG + chr6_3:11306931-11306950 Msa0939260:CDS 30.0%
ATCAATTGCAATTACATCAC+AGG + chr6_3:11306959-11306978 Msa0939260:CDS 30.0%
! CTTTCAAAATATTGGTGACT+TGG - chr6_3:11307064-11307083 None:intergenic 30.0%
AAACACAGACAAACATACAA+GGG - chr6_3:11307128-11307147 None:intergenic 30.0%
AATCCACTATATAACTACCA+TGG - chr6_3:11307614-11307633 None:intergenic 30.0%
TTCTGGTCAAAATATGTTCA+TGG - chr6_3:11307647-11307666 None:intergenic 30.0%
!!! CCAGAATTTTTTTTTTGGAC+CGG + chr6_3:11307661-11307680 Msa0939260:intron 30.0%
! TCATATTCATGGATTACTAC+CGG - chr6_3:11307683-11307702 None:intergenic 30.0%
!! TTTTGGCTGAATATGATTCA+TGG + chr6_3:11307801-11307820 Msa0939260:intron 30.0%
!! TCGGTGTTGAATAAATGATA+AGG + chr6_3:11307890-11307909 Msa0939260:intron 30.0%
ATACAGAATATGGATCTCAA+TGG + chr6_3:11307959-11307978 Msa0939260:intron 30.0%
TACAGAATATGGATCTCAAT+GGG + chr6_3:11307960-11307979 Msa0939260:intron 30.0%
!! ACATCATTGTTTTCAAGCTA+CGG - chr6_3:11308084-11308103 None:intergenic 30.0%
ACTTGATATTATGTTAGCTG+GGG - chr6_3:11308125-11308144 None:intergenic 30.0%
CACTTGATATTATGTTAGCT+GGG - chr6_3:11308126-11308145 None:intergenic 30.0%
GTAATATCAAGTATAGAACC+CGG + chr6_3:11308244-11308263 Msa0939260:CDS 30.0%
TGAACAAATTGGCGAAAAAT+TGG + chr6_3:11308342-11308361 Msa0939260:CDS 30.0%
! CACTCAATTTTCTTTCTTTC+TGG - chr6_3:11308382-11308401 None:intergenic 30.0%
CAGAAAGAAAGAAAATTGAG+TGG + chr6_3:11308380-11308399 Msa0939260:CDS 30.0%
TGGAATGAATCAAAGAAAGA+TGG + chr6_3:11308400-11308419 Msa0939260:CDS 30.0%
AAAGAAAGATGGTAAAGCAA+TGG + chr6_3:11308411-11308430 Msa0939260:CDS 30.0%
TAGGCATGTATGAAAAGTCT+GGG - chr6_3:11306353-11306372 None:intergenic 35.0%
TTAGGCATGTATGAAAAGTC+TGG - chr6_3:11306354-11306373 None:intergenic 35.0%
TTCAACTTATAGATGCTTCC+TGG - chr6_3:11306495-11306514 None:intergenic 35.0%
TGAAAACCCTCATTCTTTCT+GGG + chr6_3:11306520-11306539 Msa0939260:CDS 35.0%
TATACACCCAGAAAGAATGA+GGG - chr6_3:11306529-11306548 None:intergenic 35.0%
TTATACACCCAGAAAGAATG+AGG - chr6_3:11306530-11306549 None:intergenic 35.0%
GTGTATAATGATTGACGAGT+TGG + chr6_3:11306542-11306561 Msa0939260:CDS 35.0%
TTTGACCTGACTACTGAAAA+GGG - chr6_3:11306636-11306655 None:intergenic 35.0%
! TTTTGACCTGACTACTGAAA+AGG - chr6_3:11306637-11306656 None:intergenic 35.0%
AGGGATGAGAGATTATTTGT+TGG - chr6_3:11306741-11306760 None:intergenic 35.0%
TGGTACATCTACAGAAACAA+GGG - chr6_3:11306790-11306809 None:intergenic 35.0%
TTGGTACATCTACAGAAACA+AGG - chr6_3:11306791-11306810 None:intergenic 35.0%
AGTTCATGGGAACTACTATT+TGG - chr6_3:11306810-11306829 None:intergenic 35.0%
! AAAGACTTTGAAGACTTGGA+AGG - chr6_3:11306851-11306870 None:intergenic 35.0%
TTCCAAGTCTTCAAAGTCTT+TGG + chr6_3:11306850-11306869 Msa0939260:CDS 35.0%
TCCAAGTCTTCAAAGTCTTT+GGG + chr6_3:11306851-11306870 Msa0939260:CDS 35.0%
TTCAAACCCCTTATAATCTG+TGG - chr6_3:11306940-11306959 None:intergenic 35.0%
AACACAGACAAACATACAAG+GGG - chr6_3:11307127-11307146 None:intergenic 35.0%
CAAACACAGACAAACATACA+AGG - chr6_3:11307129-11307148 None:intergenic 35.0%
CTTCCATGGTAGTTATATAG+TGG + chr6_3:11307608-11307627 Msa0939260:intron 35.0%
CCGGTCCAAAAAAAAAATTC+TGG - chr6_3:11307664-11307683 None:intergenic 35.0%
GAATGAAAGGTTAACCAATC+TGG - chr6_3:11308019-11308038 None:intergenic 35.0%
TGGTTAACCTTTCATTCTGA+AGG + chr6_3:11308022-11308041 Msa0939260:CDS 35.0%
! CTTTCATTCTGAAGGTTCTT+CGG + chr6_3:11308030-11308049 Msa0939260:CDS 35.0%
CCACTTGATATTATGTTAGC+TGG - chr6_3:11308127-11308146 None:intergenic 35.0%
CCAGCTAACATAATATCAAG+TGG + chr6_3:11308124-11308143 Msa0939260:CDS 35.0%
GTTAGTGAAAAACCACACAA+AGG + chr6_3:11308159-11308178 Msa0939260:CDS 35.0%
CTATACTTGATATTACCCTC+TGG - chr6_3:11308240-11308259 None:intergenic 35.0%
TAGGCATGTATGAAAAGTCT+GGG - chr6_3:11306353-11306372 None:intergenic 35.0%
TTAGGCATGTATGAAAAGTC+TGG - chr6_3:11306354-11306373 None:intergenic 35.0%
TTCAACTTATAGATGCTTCC+TGG - chr6_3:11306495-11306514 None:intergenic 35.0%
TGAAAACCCTCATTCTTTCT+GGG + chr6_3:11306520-11306539 Msa0939260:CDS 35.0%
TATACACCCAGAAAGAATGA+GGG - chr6_3:11306529-11306548 None:intergenic 35.0%
TTATACACCCAGAAAGAATG+AGG - chr6_3:11306530-11306549 None:intergenic 35.0%
GTGTATAATGATTGACGAGT+TGG + chr6_3:11306542-11306561 Msa0939260:CDS 35.0%
TTTGACCTGACTACTGAAAA+GGG - chr6_3:11306636-11306655 None:intergenic 35.0%
! TTTTGACCTGACTACTGAAA+AGG - chr6_3:11306637-11306656 None:intergenic 35.0%
AGGGATGAGAGATTATTTGT+TGG - chr6_3:11306741-11306760 None:intergenic 35.0%
TGGTACATCTACAGAAACAA+GGG - chr6_3:11306790-11306809 None:intergenic 35.0%
TTGGTACATCTACAGAAACA+AGG - chr6_3:11306791-11306810 None:intergenic 35.0%
AGTTCATGGGAACTACTATT+TGG - chr6_3:11306810-11306829 None:intergenic 35.0%
! AAAGACTTTGAAGACTTGGA+AGG - chr6_3:11306851-11306870 None:intergenic 35.0%
TTCCAAGTCTTCAAAGTCTT+TGG + chr6_3:11306850-11306869 Msa0939260:CDS 35.0%
TCCAAGTCTTCAAAGTCTTT+GGG + chr6_3:11306851-11306870 Msa0939260:CDS 35.0%
TTCAAACCCCTTATAATCTG+TGG - chr6_3:11306940-11306959 None:intergenic 35.0%
AACACAGACAAACATACAAG+GGG - chr6_3:11307127-11307146 None:intergenic 35.0%
CAAACACAGACAAACATACA+AGG - chr6_3:11307129-11307148 None:intergenic 35.0%
CTTCCATGGTAGTTATATAG+TGG + chr6_3:11307608-11307627 Msa0939260:intron 35.0%
CCGGTCCAAAAAAAAAATTC+TGG - chr6_3:11307664-11307683 None:intergenic 35.0%
GAATGAAAGGTTAACCAATC+TGG - chr6_3:11308019-11308038 None:intergenic 35.0%
TGGTTAACCTTTCATTCTGA+AGG + chr6_3:11308022-11308041 Msa0939260:CDS 35.0%
! CTTTCATTCTGAAGGTTCTT+CGG + chr6_3:11308030-11308049 Msa0939260:CDS 35.0%
CCACTTGATATTATGTTAGC+TGG - chr6_3:11308127-11308146 None:intergenic 35.0%
CCAGCTAACATAATATCAAG+TGG + chr6_3:11308124-11308143 Msa0939260:CDS 35.0%
GTTAGTGAAAAACCACACAA+AGG + chr6_3:11308159-11308178 Msa0939260:CDS 35.0%
CTATACTTGATATTACCCTC+TGG - chr6_3:11308240-11308259 None:intergenic 35.0%
TGCAAGAACAGACATGTCAA+AGG - chr6_3:11306273-11306292 None:intergenic 40.0%
AGGCATGTATGAAAAGTCTG+GGG - chr6_3:11306352-11306371 None:intergenic 40.0%
AGTACCAGCTTCTCAAGATT+AGG - chr6_3:11306372-11306391 None:intergenic 40.0%
AGATTGTCCAATGTTGTCTG+AGG + chr6_3:11306395-11306414 Msa0939260:CDS 40.0%
TCACTGAGATTTCCAATGCT+AGG - chr6_3:11306426-11306445 None:intergenic 40.0%
ACTTATAGATGCTTCCTGGA+AGG - chr6_3:11306491-11306510 None:intergenic 40.0%
CTGAAAACCCTCATTCTTTC+TGG + chr6_3:11306519-11306538 Msa0939260:CDS 40.0%
! AATGATTGACGAGTTGGAAG+AGG + chr6_3:11306548-11306567 Msa0939260:CDS 40.0%
GGAAGAGGACATAGAACAAA+TGG + chr6_3:11306563-11306582 Msa0939260:CDS 40.0%
!! AGTGTTATTTGCAAGCAGAG+TGG - chr6_3:11306598-11306617 None:intergenic 40.0%
ACTCTGCTTGCAAATAACAC+TGG + chr6_3:11306597-11306616 Msa0939260:CDS 40.0%
! GTAGTCAGGTCAAAAAGCAT+TGG + chr6_3:11306642-11306661 Msa0939260:CDS 40.0%
ATTTCTCTATGTGGCCATGA+AGG + chr6_3:11306669-11306688 Msa0939260:CDS 40.0%
CATCACGTGAAAATCCTTCA+TGG - chr6_3:11306686-11306705 None:intergenic 40.0%
ATGTGTTTCCGTCTATCATC+TGG + chr6_3:11306703-11306722 Msa0939260:CDS 40.0%
AACCAAGACCAGATGATAGA+CGG - chr6_3:11306714-11306733 None:intergenic 40.0%
!! TTGAAGACTTGGAAGGTACT+TGG - chr6_3:11306844-11306863 None:intergenic 40.0%
! ACCCAAAGACTTTGAAGACT+TGG - chr6_3:11306855-11306874 None:intergenic 40.0%
AAGTCTTCAAAGTCTTTGGG+TGG + chr6_3:11306854-11306873 Msa0939260:CDS 40.0%
ACACAGACAAACATACAAGG+GGG - chr6_3:11307126-11307145 None:intergenic 40.0%
ACATGAGTATGCATCTTCCA+TGG + chr6_3:11307594-11307613 Msa0939260:intron 40.0%
AATATGGATCTCAATGGGAG+CGG + chr6_3:11307965-11307984 Msa0939260:CDS 40.0%
AATCTGGATAACCATCAGTG+GGG - chr6_3:11308003-11308022 None:intergenic 40.0%
CAATCTGGATAACCATCAGT+GGG - chr6_3:11308004-11308023 None:intergenic 40.0%
CGAAGAACCTTCAGAATGAA+AGG - chr6_3:11308032-11308051 None:intergenic 40.0%
!!! AACTTTTCAAGTTCCCCAAG+TGG + chr6_3:11308054-11308073 Msa0939260:CDS 40.0%
ACTCTTATAGAGCTGAATGG+TGG - chr6_3:11308185-11308204 None:intergenic 40.0%
CTCACTCTTATAGAGCTGAA+TGG - chr6_3:11308188-11308207 None:intergenic 40.0%
CATTCAGCTCTATAAGAGTG+AGG + chr6_3:11308186-11308205 Msa0939260:CDS 40.0%
! ATTGGTCTCCTTTGAAGATG+AGG + chr6_3:11308210-11308229 Msa0939260:CDS 40.0%
TATAGAACCCGGTAACAAAG+TGG + chr6_3:11308255-11308274 Msa0939260:CDS 40.0%
AATGACCTCCACTTTGTTAC+CGG - chr6_3:11308266-11308285 None:intergenic 40.0%
TGCAAGAACAGACATGTCAA+AGG - chr6_3:11306273-11306292 None:intergenic 40.0%
AGGCATGTATGAAAAGTCTG+GGG - chr6_3:11306352-11306371 None:intergenic 40.0%
AGTACCAGCTTCTCAAGATT+AGG - chr6_3:11306372-11306391 None:intergenic 40.0%
AGATTGTCCAATGTTGTCTG+AGG + chr6_3:11306395-11306414 Msa0939260:CDS 40.0%
TCACTGAGATTTCCAATGCT+AGG - chr6_3:11306426-11306445 None:intergenic 40.0%
ACTTATAGATGCTTCCTGGA+AGG - chr6_3:11306491-11306510 None:intergenic 40.0%
CTGAAAACCCTCATTCTTTC+TGG + chr6_3:11306519-11306538 Msa0939260:CDS 40.0%
! AATGATTGACGAGTTGGAAG+AGG + chr6_3:11306548-11306567 Msa0939260:CDS 40.0%
GGAAGAGGACATAGAACAAA+TGG + chr6_3:11306563-11306582 Msa0939260:CDS 40.0%
!! AGTGTTATTTGCAAGCAGAG+TGG - chr6_3:11306598-11306617 None:intergenic 40.0%
ACTCTGCTTGCAAATAACAC+TGG + chr6_3:11306597-11306616 Msa0939260:CDS 40.0%
! GTAGTCAGGTCAAAAAGCAT+TGG + chr6_3:11306642-11306661 Msa0939260:CDS 40.0%
ATTTCTCTATGTGGCCATGA+AGG + chr6_3:11306669-11306688 Msa0939260:CDS 40.0%
CATCACGTGAAAATCCTTCA+TGG - chr6_3:11306686-11306705 None:intergenic 40.0%
ATGTGTTTCCGTCTATCATC+TGG + chr6_3:11306703-11306722 Msa0939260:CDS 40.0%
AACCAAGACCAGATGATAGA+CGG - chr6_3:11306714-11306733 None:intergenic 40.0%
!! TTGAAGACTTGGAAGGTACT+TGG - chr6_3:11306844-11306863 None:intergenic 40.0%
! ACCCAAAGACTTTGAAGACT+TGG - chr6_3:11306855-11306874 None:intergenic 40.0%
AAGTCTTCAAAGTCTTTGGG+TGG + chr6_3:11306854-11306873 Msa0939260:CDS 40.0%
ACACAGACAAACATACAAGG+GGG - chr6_3:11307126-11307145 None:intergenic 40.0%
ACATGAGTATGCATCTTCCA+TGG + chr6_3:11307594-11307613 Msa0939260:intron 40.0%
AATATGGATCTCAATGGGAG+CGG + chr6_3:11307965-11307984 Msa0939260:CDS 40.0%
AATCTGGATAACCATCAGTG+GGG - chr6_3:11308003-11308022 None:intergenic 40.0%
CAATCTGGATAACCATCAGT+GGG - chr6_3:11308004-11308023 None:intergenic 40.0%
CGAAGAACCTTCAGAATGAA+AGG - chr6_3:11308032-11308051 None:intergenic 40.0%
!!! AACTTTTCAAGTTCCCCAAG+TGG + chr6_3:11308054-11308073 Msa0939260:CDS 40.0%
ACTCTTATAGAGCTGAATGG+TGG - chr6_3:11308185-11308204 None:intergenic 40.0%
CTCACTCTTATAGAGCTGAA+TGG - chr6_3:11308188-11308207 None:intergenic 40.0%
CATTCAGCTCTATAAGAGTG+AGG + chr6_3:11308186-11308205 Msa0939260:CDS 40.0%
! ATTGGTCTCCTTTGAAGATG+AGG + chr6_3:11308210-11308229 Msa0939260:CDS 40.0%
TATAGAACCCGGTAACAAAG+TGG + chr6_3:11308255-11308274 Msa0939260:CDS 40.0%
AATGACCTCCACTTTGTTAC+CGG - chr6_3:11308266-11308285 None:intergenic 40.0%
TGACATGTCTGTTCTTGCAG+AGG + chr6_3:11306274-11306293 Msa0939260:five_prime_UTR 45.0%
ATGTCTGTTCTTGCAGAGGA+TGG + chr6_3:11306278-11306297 Msa0939260:exon 45.0%
CATGCCTAATCTTGAGAAGC+TGG + chr6_3:11306365-11306384 Msa0939260:CDS 45.0%
GGAGAAACCTCAGACAACAT+TGG - chr6_3:11306405-11306424 None:intergenic 45.0%
! TCTGAGGTTTCTCCTAGCAT+TGG + chr6_3:11306411-11306430 Msa0939260:CDS 45.0%
! GAGTACCCTTTTCAGTAGTC+AGG + chr6_3:11306628-11306647 Msa0939260:CDS 45.0%
TTCCGTCTATCATCTGGTCT+TGG + chr6_3:11306709-11306728 Msa0939260:CDS 45.0%
CACAGACAAACATACAAGGG+GGG - chr6_3:11307125-11307144 None:intergenic 45.0%
CCAATCTGGATAACCATCAG+TGG - chr6_3:11308005-11308024 None:intergenic 45.0%
CCACTGATGGTTATCCAGAT+TGG + chr6_3:11308002-11308021 Msa0939260:CDS 45.0%
!! TTTCAAGTTCCCCAAGTGGA+AGG + chr6_3:11308058-11308077 Msa0939260:CDS 45.0%
GCTCTATAAGAGTGAGGCAT+TGG + chr6_3:11308192-11308211 Msa0939260:CDS 45.0%
ATGACCTCCACTTTGTTACC+GGG - chr6_3:11308265-11308284 None:intergenic 45.0%
TGACATGTCTGTTCTTGCAG+AGG + chr6_3:11306274-11306293 Msa0939260:five_prime_UTR 45.0%
ATGTCTGTTCTTGCAGAGGA+TGG + chr6_3:11306278-11306297 Msa0939260:exon 45.0%
CATGCCTAATCTTGAGAAGC+TGG + chr6_3:11306365-11306384 Msa0939260:CDS 45.0%
GGAGAAACCTCAGACAACAT+TGG - chr6_3:11306405-11306424 None:intergenic 45.0%
! TCTGAGGTTTCTCCTAGCAT+TGG + chr6_3:11306411-11306430 Msa0939260:CDS 45.0%
! GAGTACCCTTTTCAGTAGTC+AGG + chr6_3:11306628-11306647 Msa0939260:CDS 45.0%
TTCCGTCTATCATCTGGTCT+TGG + chr6_3:11306709-11306728 Msa0939260:CDS 45.0%
CACAGACAAACATACAAGGG+GGG - chr6_3:11307125-11307144 None:intergenic 45.0%
CCAATCTGGATAACCATCAG+TGG - chr6_3:11308005-11308024 None:intergenic 45.0%
CCACTGATGGTTATCCAGAT+TGG + chr6_3:11308002-11308021 Msa0939260:CDS 45.0%
!! TTTCAAGTTCCCCAAGTGGA+AGG + chr6_3:11308058-11308077 Msa0939260:CDS 45.0%
GCTCTATAAGAGTGAGGCAT+TGG + chr6_3:11308192-11308211 Msa0939260:CDS 45.0%
ATGACCTCCACTTTGTTACC+GGG - chr6_3:11308265-11308284 None:intergenic 45.0%
GTGACACATGTTCAAGCGTG+TGG + chr6_3:11307338-11307357 Msa0939260:intron 50.0%
GATTGTTTGCTCCCCACTGA+TGG + chr6_3:11307989-11308008 Msa0939260:CDS 50.0%
! CTGGCTCTCCTCATCTTCAA+AGG - chr6_3:11308221-11308240 None:intergenic 50.0%
TTGAAGATGAGGAGAGCCAG+AGG + chr6_3:11308221-11308240 Msa0939260:CDS 50.0%
TGAAGATGAGGAGAGCCAGA+GGG + chr6_3:11308222-11308241 Msa0939260:CDS 50.0%
AGAACCCGGTAACAAAGTGG+AGG + chr6_3:11308258-11308277 Msa0939260:CDS 50.0%
GTGACACATGTTCAAGCGTG+TGG + chr6_3:11307338-11307357 Msa0939260:intron 50.0%
GATTGTTTGCTCCCCACTGA+TGG + chr6_3:11307989-11308008 Msa0939260:CDS 50.0%
! CTGGCTCTCCTCATCTTCAA+AGG - chr6_3:11308221-11308240 None:intergenic 50.0%
TTGAAGATGAGGAGAGCCAG+AGG + chr6_3:11308221-11308240 Msa0939260:CDS 50.0%
TGAAGATGAGGAGAGCCAGA+GGG + chr6_3:11308222-11308241 Msa0939260:CDS 50.0%
AGAACCCGGTAACAAAGTGG+AGG + chr6_3:11308258-11308277 Msa0939260:CDS 50.0%
!! GTTAGCCTTCGTAGCCTTCC+AGG + chr6_3:11306474-11306493 Msa0939260:CDS 55.0%
TGCTTCCTGGAAGGCTACGA+AGG - chr6_3:11306482-11306501 None:intergenic 55.0%
AAGCTACGGCCTTCCACTTG+GGG - chr6_3:11308070-11308089 None:intergenic 55.0%
CAAGCTACGGCCTTCCACTT+GGG - chr6_3:11308071-11308090 None:intergenic 55.0%
TCAAGCTACGGCCTTCCACT+TGG - chr6_3:11308072-11308091 None:intergenic 55.0%
GCTGAATGGTGGCCTTTGTG+TGG - chr6_3:11308174-11308193 None:intergenic 55.0%
!! GTTAGCCTTCGTAGCCTTCC+AGG + chr6_3:11306474-11306493 Msa0939260:CDS 55.0%
TGCTTCCTGGAAGGCTACGA+AGG - chr6_3:11306482-11306501 None:intergenic 55.0%
AAGCTACGGCCTTCCACTTG+GGG - chr6_3:11308070-11308089 None:intergenic 55.0%
CAAGCTACGGCCTTCCACTT+GGG - chr6_3:11308071-11308090 None:intergenic 55.0%
TCAAGCTACGGCCTTCCACT+TGG - chr6_3:11308072-11308091 None:intergenic 55.0%
GCTGAATGGTGGCCTTTGTG+TGG - chr6_3:11308174-11308193 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 11306213 11308441 11306213 ID=Msa0939260;Name=Msa0939260
chr6_3 mRNA 11306213 11308441 11306213 ID=Msa0939260-mRNA-1;Parent=Msa0939260;Name=Msa0939260-mRNA-1;_AED=0.45;_eAED=0.45;_QI=84|1|0.5|1|1|1|2|0|425
chr6_3 exon 11306213 11307097 11306213 ID=Msa0939260-mRNA-1:exon:3681;Parent=Msa0939260-mRNA-1
chr6_3 exon 11307965 11308441 11307965 ID=Msa0939260-mRNA-1:exon:3682;Parent=Msa0939260-mRNA-1
chr6_3 five_prime_UTR 11306213 11306296 11306213 ID=Msa0939260-mRNA-1:five_prime_utr;Parent=Msa0939260-mRNA-1
chr6_3 CDS 11306297 11307097 11306297 ID=Msa0939260-mRNA-1:cds;Parent=Msa0939260-mRNA-1
chr6_3 CDS 11307965 11308441 11307965 ID=Msa0939260-mRNA-1:cds;Parent=Msa0939260-mRNA-1
Gene Sequence

>Msa0939260

ATGGAAAAACTGAAAATTCTAAATCTTAGTCATTCTCATTGTCTGACGCACACCCCAGACTTTTCATACATGCCTAATCTTGAGAAGCTGGTACTTAAAGATTGTCCAATGTTGTCTGAGGTTTCTCCTAGCATTGGAAATCTCAGTGAAATTCTTCTAATAGATTTGGAAGATTGTGTTAGCCTTCGTAGCCTTCCAGGAAGCATCTATAAGTTGAAATCTCTGAAAACCCTCATTCTTTCTGGGTGTATAATGATTGACGAGTTGGAAGAGGACATAGAACAAATGGAATCATTAACCACTCTGCTTGCAAATAACACTGGAATAAAAAGAGTACCCTTTTCAGTAGTCAGGTCAAAAAGCATTGGATACATTTCTCTATGTGGCCATGAAGGATTTTCACGTGATGTGTTTCCGTCTATCATCTGGTCTTGGTTGTCACCAACAAATAATCTCTCATCCCTAGTTCAAACATCTAATGTCATGTCATCCCTTGTTTCTGTAGATGTACCAAATAGTAGTTCCCATGAACTATTATCGATTTCCAAGTACCTTCCAAGTCTTCAAAGTCTTTGGGTGGAGTGCAGCTCAGAACTTCAACTTTCTCATGATGCTGCAATAATTTTGGATGCCTTATATGCCACAGATTATAAGGGGTTTGAATCAATTGCAATTACATCACAGGTATCAAATATGACTACTTCTACATCACAAGTATCAGAACATTCCTTCAAGTCTCTTTTAATTCAAATGGGAACGAATTGCCAAGTCACCAATATTTTGAAAGAGAAAATTGTACAGAATATGGATCTCAATGGGAGCGGTGATTGTTTGCTCCCCACTGATGGTTATCCAGATTGGTTAACCTTTCATTCTGAAGGTTCTTCGGTAACTTTTCAAGTTCCCCAAGTGGAAGGCCGTAGCTTGAAAACAATGATGTGCATTGTCTATACTTCAGCCCCAGCTAACATAATATCAAGTGGCCTTAAAAACATGTTAGTGAAAAACCACACAAAGGCCACCATTCAGCTCTATAAGAGTGAGGCATTGGTCTCCTTTGAAGATGAGGAGAGCCAGAGGGTAATATCAAGTATAGAACCCGGTAACAAAGTGGAGGTCATTGTTGTTTTCGAGAACAGTTTCATTGTGAAAAAGACAGCAGTTTATATTGTATATGATGAACAAATTGGCGAAAAATTGGAGCTGTATGATGTACCAGAAAGAAAGAAAATTGAGTGGAATGAATCAAAGAAAGATGGTAAAGCAATGGCCGAGTAA
Protein sequence

>Msa0939260

MEKLKILNLSHSHCLTHTPDFSYMPNLEKLVLKDCPMLSEVSPSIGNLSEILLIDLEDCVSLRSLPGSIYKLKSLKTLILSGCIMIDELEEDIEQMESLTTLLANNTGIKRVPFSVVRSKSIGYISLCGHEGFSRDVFPSIIWSWLSPTNNLSSLVQTSNVMSSLVSVDVPNSSSHELLSISKYLPSLQSLWVECSSELQLSHDAAIILDALYATDYKGFESIAITSQVSNMTTSTSQVSEHSFKSLLIQMGTNCQVTNILKEKIVQNMDLNGSGDCLLPTDGYPDWLTFHSEGSSVTFQVPQVEGRSLKTMMCIVYTSAPANIISSGLKNMLVKNHTKATIQLYKSEALVSFEDEESQRVISSIEPGNKVEVIVVFENSFIVKKTAVYIVYDEQIGEKLELYDVPERKKIEWNESKKDGKAMAE*