AlfalfaGEDB | Msa0939270

M. sativa cultivar zhongmu-4 / Msa0939270

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0939270	sp\|V9M398\|RUN1_VITRO	41.274	785	397	11	93	834	24	787	8.70e-176	555

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0939270	A0A072U7H9	88.042	1037	116	2	89	1118	22	1057	0.0	1814

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TFs/TRs:

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Gene ID	Type	Classification
Msa0939270	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0906900	Msa0939270	0.857705	1.360536e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0939270	MtrunA17_Chr6g0455211	80.534	1048	186	5	68	1103	17	1058	0.0	1721
Msa0939270	MtrunA17_Chr6g0454951	78.411	1070	181	5	97	1118	83	1150	0.0	1689
Msa0939270	MtrunA17_Chr6g0454851	80.614	1042	173	6	97	1112	90	1128	0.0	1687
Msa0939270	MtrunA17_Chr6g0454821	78.571	1036	183	9	85	1092	31	1055	0.0	1603
Msa0939270	MtrunA17_Chr6g0454971	73.644	1051	235	7	96	1118	49	1085	0.0	1543
Msa0939270	MtrunA17_Chr6g0455191	72.238	1059	249	5	96	1118	317	1366	0.0	1505
Msa0939270	MtrunA17_Chr6g0455191	54.438	169	63	2	98	259	66	227	9.00e-42	167
Msa0939270	MtrunA17_Chr6g0455131	70.420	1048	278	6	96	1114	87	1131	0.0	1482
Msa0939270	MtrunA17_Chr4g0005851	68.569	1069	278	6	95	1114	36	1095	0.0	1454
Msa0939270	MtrunA17_Chr4g0005871	65.832	1118	297	10	50	1114	97	1182	0.0	1425

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0939270	AT5G36930.4	37.159	1063	589	19	97	1098	15	1059	0.0	616
Msa0939270	AT5G36930.2	37.159	1063	589	19	97	1098	18	1062	0.0	616
Msa0939270	AT5G36930.1	37.159	1063	589	19	97	1098	15	1059	0.0	616
Msa0939270	AT5G36930.3	37.159	1063	589	19	97	1098	15	1059	0.0	616
Msa0939270	AT5G17680.1	38.032	752	420	12	92	825	14	737	4.77e-154	493
Msa0939270	AT5G17680.2	37.981	753	420	12	92	825	14	738	7.00e-154	493
Msa0939270	AT1G27170.1	35.714	798	446	10	94	836	12	797	1.09e-153	494
Msa0939270	AT1G27180.5	33.935	831	465	16	87	849	3	817	1.42e-144	470
Msa0939270	AT1G27180.8	33.935	831	465	16	87	849	3	817	1.42e-144	470
Msa0939270	AT1G27180.1	33.935	831	465	16	87	849	167	981	4.00e-143	469

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Find 223 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCGTGGAGAAGCAC+GGG	0.560733	6_3:-11316948	Msa0939270:CDS
AAAATACAAAGCATTGAAAG+CGG	0.619815	6_3:-11315595	Msa0939270:CDS
AAACTTCCCTAATATTTGCA+AGG	0.558735	6_3:+11315689	None:intergenic
AAAGAAATGGATCTGCGCAA+AGG	0.628348	6_3:-11317003	None:intergenic
AAAGACTTCGAAGACTTGGA+AGG	0.652921	6_3:+11312254	None:intergenic
AAAGCCTGATGTTCAACTTG+TGG	0.670514	6_3:+11316841	None:intergenic
AAAGGGAACAAAAGCTATTA+AGG	0.191288	6_3:-11314654	Msa0939270:intron
AAATAAGATTGAGAAGGATG+AGG	0.576615	6_3:-11316362	Msa0939270:CDS
AAATCTATTTACAATAAAAT+TGG	0.219575	6_3:-11315736	Msa0939270:CDS
AAATGTAGTTGAGTATTCTG+GGG	0.645193	6_3:-11315290	Msa0939270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTATAGTATCATCCTCTTC+AGG	+	chr6_3:11310803-11310822	None:intergenic	30.0%
TTTGTTTCCAAATCGATCAT+GGG	+	chr6_3:11310831-11310850	None:intergenic	30.0%
ATTTGTTTCCAAATCGATCA+TGG	+	chr6_3:11310832-11310851	None:intergenic	30.0%
GAACACTTCATTCTTAATAG+CGG	+	chr6_3:11310894-11310913	None:intergenic	30.0%
TGATGGAATTAAAGTCTTCA+AGG	-	chr6_3:11310979-11310998	Msa0939270:CDS	30.0%
AAATAAGATTGAGAAGGATG+AGG	-	chr6_3:11311252-11311271	Msa0939270:intron	30.0%
ATCAAAAATACCTCGAGTTT+AGG	+	chr6_3:11311360-11311379	None:intergenic	30.0%
TCTAGTTAGAATTCAAACCT+TGG	+	chr6_3:11311530-11311549	None:intergenic	30.0%
AAATTGTTGACCATTGAAAG+AGG	+	chr6_3:11311561-11311580	None:intergenic	30.0%
TTTATGTAGGAATGAAAGTG+AGG	-	chr6_3:11311661-11311680	Msa0939270:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	11310617	11317019	11310617	ID=Msa0939270;Name=Msa0939270
chr6_3	mRNA	11310617	11317019	11310617	ID=Msa0939270-mRNA-1;Parent=Msa0939270;Name=Msa0939270-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|0.25\|0\|1\|1\|1\|5\|0\|1118
chr6_3	exon	11316289	11317019	11316289	ID=Msa0939270-mRNA-1:exon:3708;Parent=Msa0939270-mRNA-1
chr6_3	exon	11314856	11315966	11314856	ID=Msa0939270-mRNA-1:exon:3707;Parent=Msa0939270-mRNA-1
chr6_3	exon	11314397	11314672	11314397	ID=Msa0939270-mRNA-1:exon:3706;Parent=Msa0939270-mRNA-1
chr6_3	exon	11312057	11312830	11312057	ID=Msa0939270-mRNA-1:exon:3705;Parent=Msa0939270-mRNA-1
chr6_3	exon	11310617	11311081	11310617	ID=Msa0939270-mRNA-1:exon:3704;Parent=Msa0939270-mRNA-1
chr6_3	CDS	11316289	11317019	11316289	ID=Msa0939270-mRNA-1:cds;Parent=Msa0939270-mRNA-1
chr6_3	CDS	11314856	11315966	11314856	ID=Msa0939270-mRNA-1:cds;Parent=Msa0939270-mRNA-1
chr6_3	CDS	11314397	11314672	11314397	ID=Msa0939270-mRNA-1:cds;Parent=Msa0939270-mRNA-1
chr6_3	CDS	11312057	11312830	11312057	ID=Msa0939270-mRNA-1:cds;Parent=Msa0939270-mRNA-1
chr6_3	CDS	11310617	11311081	11310617	ID=Msa0939270-mRNA-1:cds;Parent=Msa0939270-mRNA-1

Gene Sequence

>Msa0939270

ATGGATCTGCGCAAAGGTCCGTGGAGTCCAGAAGAAGATGAAGCACTTCAAAAGCTCGTGGAGAAGCACGGGCCGAGAAACTGGTCGACTATAAGCAAATCGATACCAGGCCGGTCAGTGAAATCATGCAGGTTACACTGGTGTAATCTGCATTCACCACAAGTTGAACATCAGGCTTTTACGCCTGAAGAGGATGATACTATAATCAGAGCCCATGATCGATTTGGAAACAAATGGGCTACAATAGCCAGGCTTTTATCGGGCCGAACTGATACCGCTATTAAGAATGAAGTGTTCCTAAGTTTTCGAGGGGAAGACACTCGTTCATCCTTCACTTCACATCTATATGCAGCTCTTCAAAATGATGGAATTAAAGTCTTCAAGGACGATGATTCACTTCAAAGTGGAGATCACATTTCAACATCACTATTGCAATCAATTGACCGATCTCAAATTTCTCTTATTGTTTTCTCCACTAATTATGCTGAATCTCGATGGTGTTTGGAAGAGTTGATTCAAATAATGAAGTGTCACAGATCTGGTGGCCAACTTGTTTTACCGGTCTTCTACCATGTAGATCCATCTGAAGTACGTCATCAAACCGGTGAATTCGGAAAATCTTTTCAAAATCTTCTAAATAAGATTGAGAAGGATGAGGATGAGGATGAGGATGAGCAGGAATATGATGAGTTGTGGAGAGCAGCACTTCGTGAGGCAGCTGGTCTTGCTGGGAATGAAAGTGAGGCTATCCAGGACATTGTTGAAAATGTTGCGCATAAGCTTGACAAGACAGACTTGTTTATTGCTAATAATCCAGTGGGAGTTGAATCTCGAGTGCAAGATATGATTCAACTGCTGGACCAAGATATACAACAATCAAATGATGTTCTCCTATTAGGGATGTGGGGTATGGGGGGAGTTGGTAAAACAACCATTGCTAAATCTATTTACAATAAAATTGGCCGGAATTTTGAAGGTAGAAGCTTCCTTGCAAATATTAGGGAAGTTTGGGATGAGAATGCTGGAAAAGTGAATTTACAAGAACAACTTCTGTTCGACATCTGCAAAGATAAGACAACCAAAATACAAAGCATTGAAAGCGGAAAAATCATATTAAAGGATAGACTCAGCCGTAAAAGAGTACTAATTTTACTTGATGATGTTAATACATTGGACCAACTAAATGCTTTGTGCGGAAGTCATAAATGGTTTGGTCCGAGGAGTAGAATAATCATTACCACAAGGGATAAACATATACTTAGTGGGAATAGGGTTAATAAAGTATTTAAAATGAAACACATGGATGAAAGTGAATCAATTGAGCTATTTAGTTGGCATGCATTCAAGCAAGCGAGTCCTACAAAAGATTTTGCTGAAATTTCTAGAAATGTAGTTGAGTATTCTGGGGGATTGCCACTAGCTTTGGAAATCCTTGGGTCATATTTGTTTGATAGAGGGGTAACAGAATGGAAAAGTGTATTGGACAAACTCAAAAGAATTCCTAATAATCAAGTACAAAAGAAGTTAAGAATAAGCTATGATGCTTTAAATGATGACACTGAGAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGACCGAAATGACGTTACACTTATATTAAATGGATGTGGACTTTTTGCTGAAATTGGAATAAGTATCCTTGTTGAGCGAAGTCTTATAACTGTTGATGATAAGAACAAACTTGGAATGCATGATTTGTTGCGAGATATGGGAAGAGAAATCATTCGTGAGAAATCACCAGAGGAGCTCGAGGAGCGTTGCAGGTTGTGGTTTCATGACGATGTGCTTCATGTATTGTCAGAACATACGGGAACAAAAGCTATTAAGGGGCTGGCTTTGAAGTTGCCAAGATCCAATGAAAAATGTTTTAGTACTAAAGCATTCAAGAAGATGAAGAGACTTAGATTGCTTCAACTTTCTGGAGTAAAACTTGATGGAGATTTTGAATATCTTTCGAGAAATCTGAAATGGCTGTCTTGGAATGGATTTTCTTTAACACATATACCTAACAACTTTCATAGAGAAAATTTAGTTTCCATCGAGTTACAGAATAGCAATGTCAGTCTTTTATGGAAAGAGGACCAGAGGATGGAAAAGCTGAAAATTCTAAATCTTAGTCATTCTCATTGTCTGACGCACACCCCTGACTTTTCATACTTGCCTAATCTTGAGAAGCTGGTACTCAAAGATTGTCCAATATTGTCTGAGGTTTCTCCTACCATTGGAGATCTCACTGAAATACTTCTAATAGATTTGGAAGATTGTGTTAGCCTTCATAGCCTTCCAAGAAGCATCTATAAGTTGAAATCTTTGAAAATACTCATTCTTTCTGGGTGTTTAATGATTGACAAGTTGGAAGACGACTTGGAACAAATGGAATCATTAACCACTCTTCTAGCAAACAACACTGCAATAACAACAGTGCCCTTTTCAGTAGTAAGGTCAAAAAGCATTGGATATATCTCTCTATGTGGCTATGAAGGACTTTCGCATGATGTGTTTCCATCTATCATCTGGTCTTGGATGTCACCAACAAATAATCTCCCACCCCTATTTCAAACATCTAATATCATGTCATCTCTTGTTCCTCTAGATGTACCACATAGTAGTTCCCACGAACTATCATCGATTTCCATGTACCTTCCAAGTCTTCGAAGTCTTTGGGTGGATTGCAGTTCAGAACGTCAACTTTCTCATGATGCAGCAATAATTTTAGATGCCTTGCATACCATAAATCGTAAGGAGTTGGAACCAACTGCAACTACGTCACAAGTATCAAAACATTCCTTGAAGTCTCTTTTAATTCAAATTGGAATCAATTGCCAAGCCACTAATATTCTAAAAGATATAATTTTACAGAATATAGATGTCAATAGGAGTGGTGGTTGTTTGCTTCCTGGTGATAGTTATCCAAATTGGTTAACCTTTCTTTCGGAAGGTTCTTCTGTAACTTTAGAAGTCCCTCAAGTGGAAGGGCGTAAGTTGAAGACAATGATGTGCATTGTCTATACTTCAACCCCAGATAACATAACATCAAGTGGCCTTAAAAATGTGTTAGTGAAAAATTACACAAAGGCCACCATTCAGCTCTATAAGAGCGAGGCATTAGTCTCCTTTGAAGATGAGGAGGCTCTGAGGGCAGTATCAAGTATAGAACCCGGTAACAAAATGGAGGTCGTTGTTGTTTTTGAGAACAGTTTCATTGTGAAAAAGACAGCAGTTTATCTCGTATACGATGAACCATCTGTCAAGAGATTCTCTACTGAAGAGGAGCCCACTGATGACTTCAATCAGAACCGAAAGAAGAAAAACCGAGTGAAATGA

Protein sequence

>Msa0939270

MDLRKGPWSPEEDEALQKLVEKHGPRNWSTISKSIPGRSVKSCRLHWCNLHSPQVEHQAFTPEEDDTIIRAHDRFGNKWATIARLLSGRTDTAIKNEVFLSFRGEDTRSSFTSHLYAALQNDGIKVFKDDDSLQSGDHISTSLLQSIDRSQISLIVFSTNYAESRWCLEELIQIMKCHRSGGQLVLPVFYHVDPSEVRHQTGEFGKSFQNLLNKIEKDEDEDEDEQEYDELWRAALREAAGLAGNESEAIQDIVENVAHKLDKTDLFIANNPVGVESRVQDMIQLLDQDIQQSNDVLLLGMWGMGGVGKTTIAKSIYNKIGRNFEGRSFLANIREVWDENAGKVNLQEQLLFDICKDKTTKIQSIESGKIILKDRLSRKRVLILLDDVNTLDQLNALCGSHKWFGPRSRIIITTRDKHILSGNRVNKVFKMKHMDESESIELFSWHAFKQASPTKDFAEISRNVVEYSGGLPLALEILGSYLFDRGVTEWKSVLDKLKRIPNNQVQKKLRISYDALNDDTEKEIFLDIACFFIGMDRNDVTLILNGCGLFAEIGISILVERSLITVDDKNKLGMHDLLRDMGREIIREKSPEELEERCRLWFHDDVLHVLSEHTGTKAIKGLALKLPRSNEKCFSTKAFKKMKRLRLLQLSGVKLDGDFEYLSRNLKWLSWNGFSLTHIPNNFHRENLVSIELQNSNVSLLWKEDQRMEKLKILNLSHSHCLTHTPDFSYLPNLEKLVLKDCPILSEVSPTIGDLTEILLIDLEDCVSLHSLPRSIYKLKSLKILILSGCLMIDKLEDDLEQMESLTTLLANNTAITTVPFSVVRSKSIGYISLCGYEGLSHDVFPSIIWSWMSPTNNLPPLFQTSNIMSSLVPLDVPHSSSHELSSISMYLPSLRSLWVDCSSERQLSHDAAIILDALHTINRKELEPTATTSQVSKHSLKSLLIQIGINCQATNILKDIILQNIDVNRSGGCLLPGDSYPNWLTFLSEGSSVTLEVPQVEGRKLKTMMCIVYTSTPDNITSSGLKNVLVKNYTKATIQLYKSEALVSFEDEEALRAVSSIEPGNKMEVVVVFENSFIVKKTAVYLVYDEPSVKRFSTEEEPTDDFNQNRKKKNRVK*