Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942980 | XP_013451415.1 | 94.144 | 222 | 13 | 0 | 1 | 222 | 1 | 222 | 9.98e-156 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942980 | A0A072UI29 | 94.144 | 222 | 13 | 0 | 1 | 222 | 1 | 222 | 4.77e-156 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0548880 | Msa0942980 | -0.800454 | 1.430256e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942980 | MtrunA17_Chr6g0459581 | 94.144 | 222 | 13 | 0 | 1 | 222 | 1 | 222 | 9.18e-160 | 440 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942980 | AT5G02740.1 | 44.311 | 167 | 90 | 2 | 58 | 222 | 63 | 228 | 2.63e-48 | 158 |
| Msa0942980 | AT5G02740.2 | 43.802 | 121 | 66 | 1 | 58 | 176 | 63 | 183 | 2.44e-34 | 121 |
Find 63 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAAGTTATTATGTTTATT+TGG | 0.111275 | 6_3:-18296145 | Msa0942980:three_prime_UTR |
| CATGAAACTGTTTAAAATTA+TGG | 0.144296 | 6_3:-18296089 | Msa0942980:three_prime_UTR |
| GGAATACATTACATTGAAAT+TGG | 0.161036 | 6_3:+18298359 | None:intergenic |
| ATCTCAACCAAGCAATAATT+TGG | 0.224552 | 6_3:-18296044 | Msa0942980:three_prime_UTR |
| GTTGCATTGTTATTCAATTA+AGG | 0.235354 | 6_3:-18295992 | Msa0942980:three_prime_UTR |
| AAGCTCACAATTTGCAGATT+TGG | 0.261138 | 6_3:-18296691 | Msa0942980:CDS |
| CTTCCGTCAATATGTTTCTA+AGG | 0.276771 | 6_3:-18296635 | Msa0942980:intron |
| GACTCTGGACGATGTTAAAA+TGG | 0.290012 | 6_3:-18298402 | Msa0942980:CDS |
| AAAAGTTATTATGTTTATTT+GGG | 0.290289 | 6_3:-18296144 | Msa0942980:three_prime_UTR |
| GAAGGGTCGTTTGTACAAAT+TGG | 0.308196 | 6_3:-18297575 | Msa0942980:CDS |
| GGGTAATGAACCCGTTAAAA+TGG | 0.339380 | 6_3:-18296331 | Msa0942980:CDS |
| CTCTTGTCAGGTTTGACATA+TGG | 0.349933 | 6_3:-18298494 | Msa0942980:intron |
| CTTGGTTGAGATTCAAGATA+TGG | 0.356530 | 6_3:+18296055 | None:intergenic |
| AAATGTATTATAGATTGAAT+TGG | 0.382368 | 6_3:-18295952 | Msa0942980:three_prime_UTR |
| GAATACATTACATTGAAATT+GGG | 0.406056 | 6_3:+18298360 | None:intergenic |
| TGTTTAAAATTATGGCAAAC+TGG | 0.413523 | 6_3:-18296081 | Msa0942980:three_prime_UTR |
| GATATCATCCACTTCCTTGA+AGG | 0.414308 | 6_3:-18298434 | Msa0942980:CDS |
| AATGCATTCATTGCAAAGAA+TGG | 0.414470 | 6_3:-18296273 | Msa0942980:CDS |
| TCATCGCTTGAATCTTTGAA+TGG | 0.422254 | 6_3:+18296295 | None:intergenic |
| TTAGGGTTAATTGTGGAAGA+TGG | 0.433349 | 6_3:-18302352 | Msa0942980:intron |
| TATATACATGACAAGATGAT+AGG | 0.458075 | 6_3:+18295874 | None:intergenic |
| AGATGAATCATATTCATAAC+CGG | 0.458720 | 6_3:+18296656 | None:intergenic |
| TCAATTACCAAATTATTGCT+TGG | 0.464272 | 6_3:+18296037 | None:intergenic |
| GAGTCAAATTACAACCTTCA+AGG | 0.464292 | 6_3:+18298420 | None:intergenic |
| AATGTATTATAGATTGAATT+GGG | 0.468440 | 6_3:-18295951 | Msa0942980:three_prime_UTR |
| TAGGGTTAATTGTGGAAGAT+GGG | 0.481124 | 6_3:-18302351 | Msa0942980:exon |
| ATGCATTCATTGCAAAGAAT+GGG | 0.484499 | 6_3:-18296272 | Msa0942980:CDS |
| ATGCTATACGCGTGATCGGA+AGG | 0.491267 | 6_3:-18297597 | Msa0942980:CDS |
| AATTACAACCTTCAAGGAAG+TGG | 0.492625 | 6_3:+18298426 | None:intergenic |
| ATCAGATTGATCGTTCTCAA+TGG | 0.494096 | 6_3:-18297423 | Msa0942980:intron |
| GATTTGGATCAGATCGTGTC+CGG | 0.494292 | 6_3:-18296675 | Msa0942980:CDS |
| AGTGCATTTCAGAGAAGTAA+TGG | 0.496716 | 6_3:-18302285 | Msa0942980:CDS |
| TCAGATTGATCGTTCTCAAT+GGG | 0.498161 | 6_3:-18297422 | Msa0942980:intron |
| GACAATGCTATACGCGTGAT+CGG | 0.498822 | 6_3:-18297601 | Msa0942980:CDS |
| TGAAGGTTGTAATTTGACTC+TGG | 0.499348 | 6_3:-18298417 | Msa0942980:CDS |
| TTGTCATAGGCACTGTAAGT+AGG | 0.501149 | 6_3:+18297619 | None:intergenic |
| TCTGCAAATTGTGAGCTTCG+TGG | 0.502879 | 6_3:+18296696 | None:intergenic |
| GTCGTTTGTACAAATTGGAT+AGG | 0.503719 | 6_3:-18297570 | Msa0942980:CDS |
| CTTACAGTTCTTCCATCGTA+TGG | 0.504695 | 6_3:+18297388 | None:intergenic |
| TGTCAGGTTTGACATATGGT+AGG | 0.527487 | 6_3:-18298490 | Msa0942980:intron |
| TTCAGTAATTACAAGACTCA+TGG | 0.530153 | 6_3:-18296212 | Msa0942980:exon |
| CACGCGTATAGCATTGTCAT+AGG | 0.533599 | 6_3:+18297606 | None:intergenic |
| TGTCATAGGCACTGTAAGTA+GGG | 0.535421 | 6_3:+18297620 | None:intergenic |
| TAACCTTAGAAACATATTGA+CGG | 0.538571 | 6_3:+18296632 | None:intergenic |
| TGAAATGAGAAAAGAAGCGT+AGG | 0.539460 | 6_3:+18302613 | None:intergenic |
| GTTTATTTGGGATTTCGTAA+CGG | 0.544439 | 6_3:-18296132 | Msa0942980:three_prime_UTR |
| TCGTTTGTACAAATTGGATA+GGG | 0.546525 | 6_3:-18297569 | Msa0942980:intron |
| ACTCATGGTGATGGTTCTGT+AGG | 0.550697 | 6_3:-18296197 | Msa0942980:three_prime_UTR |
| TATACGCGTGATCGGAAGGA+AGG | 0.555284 | 6_3:-18297593 | Msa0942980:CDS |
| GACAAGATGATAGGTGCCAT+TGG | 0.560058 | 6_3:+18295883 | None:intergenic |
| TGTGAATTTAGGGTTAATTG+TGG | 0.569086 | 6_3:-18302359 | Msa0942980:intron |
| TTGACATATGGTAGGCTGAT+CGG | 0.575893 | 6_3:-18298482 | Msa0942980:CDS |
| GTTTGTTTCAGAGCTGGAGA+GGG | 0.593720 | 6_3:-18296351 | Msa0942980:intron |
| TTTCTGCTACGATCGCTGAA+AGG | 0.600652 | 6_3:+18302577 | None:intergenic |
| TGAAGCTGAAAAGCCACCAC+AGG | 0.618962 | 6_3:-18302238 | Msa0942980:CDS |
| GCAGTTGTTGAATCCTGTGG+TGG | 0.622224 | 6_3:+18302225 | None:intergenic |
| TGTTTGTTTCAGAGCTGGAG+AGG | 0.627343 | 6_3:-18296352 | Msa0942980:intron |
| AATTACAAGACTCATGGTGA+TGG | 0.631796 | 6_3:-18296206 | Msa0942980:three_prime_UTR |
| GTATCGAAATGCGATTGTTG+AGG | 0.635754 | 6_3:+18296241 | None:intergenic |
| ATACGCGTGATCGGAAGGAA+GGG | 0.636421 | 6_3:-18297592 | Msa0942980:CDS |
| GTAGCAGTTGTTGAATCCTG+TGG | 0.646615 | 6_3:+18302222 | None:intergenic |
| GACATCGTTACTCCATACGA+TGG | 0.678013 | 6_3:-18297400 | Msa0942980:CDS |
| TGATAGGTGCCATTGGATGA+CGG | 0.683190 | 6_3:+18295890 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTAATTGTATGATA+TGG | + | chr6_3:18296470-18296489 | None:intergenic | 10.0% |
| !!! | TTTAAAATATCTTTGTAATT+TGG | - | chr6_3:18296911-18296930 | Msa0942980:intron | 10.0% |
| !!! | TATTTTCTCTTTTTTTAATT+AGG | - | chr6_3:18296994-18297013 | Msa0942980:intron | 10.0% |
| !!! | TATATATTTTCAATATCAAT+TGG | + | chr6_3:18297431-18297450 | None:intergenic | 10.0% |
| !! | ATATTTCAATTATACTAAAT+AGG | + | chr6_3:18299029-18299048 | None:intergenic | 10.0% |
| !!! | AGTATAATTTTACAAATTTA+TGG | - | chr6_3:18299724-18299743 | Msa0942980:intron | 10.0% |
| !! | AACATTAAACAAATTAAAAA+GGG | + | chr6_3:18302059-18302078 | None:intergenic | 10.0% |
| !! | AAACATTAAACAAATTAAAA+AGG | + | chr6_3:18302060-18302079 | None:intergenic | 10.0% |
| !! | TAAAAGTTATTATGTTTATT+TGG | - | chr6_3:18302319-18302338 | Msa0942980:CDS | 10.0% |
| !! | AAAAGTTATTATGTTTATTT+GGG | - | chr6_3:18302320-18302339 | Msa0942980:CDS | 10.0% |
| !!! | AATTGTTTTAAGACTTTAAT+GGG | - | chr6_3:18296385-18296404 | Msa0942980:intron | 15.0% |
| !!! | TTTAAAATATCTTTGTGATT+TGG | - | chr6_3:18296493-18296512 | Msa0942980:intron | 15.0% |
| !!! | ATTTTAAAATATCTGTGATT+TGG | - | chr6_3:18296710-18296729 | Msa0942980:CDS | 15.0% |
| !!! | TATTTTCTCTTGTTTTAATT+AGG | - | chr6_3:18296787-18296806 | Msa0942980:intron | 15.0% |
| !! | AAAAAAAAAAAAATTGGACA+CGG | + | chr6_3:18297279-18297298 | None:intergenic | 15.0% |
| !!! | AAGATTCTTTATTTTCTTTA+GGG | - | chr6_3:18298141-18298160 | Msa0942980:intron | 15.0% |
| !!! | CATATAGTTTTACAAATTTA+TGG | - | chr6_3:18299295-18299314 | Msa0942980:intron | 15.0% |
| !! | TAAATAATGTTATTAGTATC+AGG | + | chr6_3:18299896-18299915 | None:intergenic | 15.0% |
| !! | AAATGTATTATAGATTGAAT+TGG | - | chr6_3:18302512-18302531 | Msa0942980:intron | 15.0% |
| !! | AATGTATTATAGATTGAATT+GGG | - | chr6_3:18302513-18302532 | Msa0942980:intron | 15.0% |
| !!! | TTTTAGAAAATTTACCTGTT+CGG | + | chr6_3:18295916-18295935 | None:intergenic | 20.0% |
| !! | TATCAAGCAAAATGAAAAAT+GGG | + | chr6_3:18295967-18295986 | None:intergenic | 20.0% |
| !! | ATATTTATGGCGATAAAAAT+GGG | - | chr6_3:18296056-18296075 | Msa0942980:three_prime_UTR | 20.0% |
| !! | TACAAACAAATTCACAAAAA+GGG | + | chr6_3:18296302-18296321 | None:intergenic | 20.0% |
| !! | ATACAAACAAATTCACAAAA+AGG | + | chr6_3:18296303-18296322 | None:intergenic | 20.0% |
| !!! | TTAAAGTTATGTTGGATTTT+TGG | - | chr6_3:18296342-18296361 | Msa0942980:CDS | 20.0% |
| !!! | GAATTGTTTTAAGACTTTAA+TGG | - | chr6_3:18296384-18296403 | Msa0942980:intron | 20.0% |
| !!! | ATCTTTTATTTTTTTGGCTT+TGG | - | chr6_3:18296574-18296593 | Msa0942980:intron | 20.0% |
| !! | TTAAAATAAGTTGTATGACA+TGG | + | chr6_3:18296697-18296716 | None:intergenic | 20.0% |
| !!! | AGGATTGTTATTGTTAATAT+TGG | - | chr6_3:18296807-18296826 | Msa0942980:intron | 20.0% |
| !!! | GGATTGTTATTGTTAATATT+GGG | - | chr6_3:18296808-18296827 | Msa0942980:intron | 20.0% |
| !!! | GATTGTTATTGTTAATATTG+GGG | - | chr6_3:18296809-18296828 | Msa0942980:intron | 20.0% |
| !! | TTAAAATTAGTTGTACAACA+TGG | + | chr6_3:18296896-18296915 | None:intergenic | 20.0% |
| !! | AAAATATCTTTGTAATTTGG+TGG | - | chr6_3:18296914-18296933 | Msa0942980:intron | 20.0% |
| !!! | GGATTTTTGTTGTTAATATT+CGG | - | chr6_3:18297015-18297034 | Msa0942980:intron | 20.0% |
| !!! | GATTTTTGTTGTTAATATTC+GGG | - | chr6_3:18297016-18297035 | Msa0942980:intron | 20.0% |
| !!! | TAATGTCTTTTACTAAATAG+AGG | - | chr6_3:18298019-18298038 | Msa0942980:intron | 20.0% |
| !!! | AATTTTCCCTTATGATTATT+AGG | - | chr6_3:18298084-18298103 | Msa0942980:intron | 20.0% |
| !!! | GAAGATTCTTTATTTTCTTT+AGG | - | chr6_3:18298140-18298159 | Msa0942980:intron | 20.0% |
| !! | TTAAACATTTACAGTATGTT+TGG | - | chr6_3:18298183-18298202 | Msa0942980:intron | 20.0% |
| !! | TATGTTTGGATTGAATAATT+AGG | - | chr6_3:18298197-18298216 | Msa0942980:intron | 20.0% |
| !!! | TTTTACGATTTTACGATTAA+CGG | + | chr6_3:18298385-18298404 | None:intergenic | 20.0% |
| !!! | TCTTTTCCTAAAAATATGTA+AGG | + | chr6_3:18298891-18298910 | None:intergenic | 20.0% |
| !!! | TCATTTTTAAACCAATAAAG+TGG | + | chr6_3:18299580-18299599 | None:intergenic | 20.0% |
| !! | GAATGAAATATAAGCAAAAA+GGG | - | chr6_3:18299618-18299637 | Msa0942980:intron | 20.0% |
| !! | ACACATAAATATTGAAAACA+AGG | - | chr6_3:18299818-18299837 | Msa0942980:intron | 20.0% |
| !! | GAATACATTACATTGAAATT+GGG | + | chr6_3:18300107-18300126 | None:intergenic | 20.0% |
| !! | CTATTCCTAAAAAAAAACTA+AGG | - | chr6_3:18300646-18300665 | Msa0942980:intron | 20.0% |
| !!! | GATTTTTTCATTCTTTTCAT+TGG | - | chr6_3:18301017-18301036 | Msa0942980:intron | 20.0% |
| !! | ACAAAAAAATTGATTAGCAA+TGG | + | chr6_3:18301118-18301137 | None:intergenic | 20.0% |
| !! | AGAAAATAGTTATTCTTTGA+TGG | - | chr6_3:18301141-18301160 | Msa0942980:intron | 20.0% |
| !! | CTGTTAAATAATTCATCAAT+AGG | + | chr6_3:18301188-18301207 | None:intergenic | 20.0% |
| !!! | TATATTTTTCCTTTATTAGC+AGG | + | chr6_3:18301317-18301336 | None:intergenic | 20.0% |
| !!! | ATGATTTTTGATATAGATGA+TGG | - | chr6_3:18301373-18301392 | Msa0942980:intron | 20.0% |
| !!! | TTTAAACCATTGTTGTTAAA+TGG | + | chr6_3:18301646-18301665 | None:intergenic | 20.0% |
| !!! | TTTTGCTAGATTTTAATTGA+AGG | - | chr6_3:18301741-18301760 | Msa0942980:intron | 20.0% |
| !!! | CATGAAACTGTTTAAAATTA+TGG | - | chr6_3:18302375-18302394 | Msa0942980:intron | 20.0% |
| ! | CTATCAAGCAAAATGAAAAA+TGG | + | chr6_3:18295968-18295987 | None:intergenic | 25.0% |
| ! | GATATTTATGGCGATAAAAA+TGG | - | chr6_3:18296055-18296074 | Msa0942980:three_prime_UTR | 25.0% |
| !!! | TTGTTTTGTGATGTGAATTT+AGG | - | chr6_3:18296094-18296113 | Msa0942980:three_prime_UTR | 25.0% |
| !! | TGTTTTGTGATGTGAATTTA+GGG | - | chr6_3:18296095-18296114 | Msa0942980:three_prime_UTR | 25.0% |
| !!! | GCTTGATTTTAAAGTTATGT+TGG | - | chr6_3:18296334-18296353 | Msa0942980:CDS | 25.0% |
| !! | AAAATATCTTTGTGATTTGG+TGG | - | chr6_3:18296496-18296515 | Msa0942980:intron | 25.0% |
| !!! | CAGTGCATCTTTTATTTTTT+TGG | - | chr6_3:18296568-18296587 | Msa0942980:intron | 25.0% |
| !! | TTTTATACTGTCATCGAATA+AGG | - | chr6_3:18296658-18296677 | Msa0942980:CDS | 25.0% |
| !! | TTAAAATATCTGTGATTTGG+TGG | - | chr6_3:18296713-18296732 | Msa0942980:CDS | 25.0% |
| !! | ACAATTTGCTCAACAAATAA+GGG | + | chr6_3:18297131-18297150 | None:intergenic | 25.0% |
| !! | AACAATTTGCTCAACAAATA+AGG | + | chr6_3:18297132-18297151 | None:intergenic | 25.0% |
| !! | TTTTCAATATCAATTGGACA+CGG | + | chr6_3:18297425-18297444 | None:intergenic | 25.0% |
| ! | AAAGTAAAGGATCTATTCTA+AGG | + | chr6_3:18297559-18297578 | None:intergenic | 25.0% |
| ! | CTATTTGTCTCAAAAAGTAA+AGG | + | chr6_3:18297572-18297591 | None:intergenic | 25.0% |
| ! | TCCTAGAATTATGTATGTAA+GGG | - | chr6_3:18297683-18297702 | Msa0942980:intron | 25.0% |
| !! | TGTCATTTATGAATACCTAA+CGG | - | chr6_3:18298050-18298069 | Msa0942980:intron | 25.0% |
| ! | TTTGGATTGAATAATTAGGA+GGG | - | chr6_3:18298201-18298220 | Msa0942980:intron | 25.0% |
| ! | AACATTAATCGTAAAATCGT+AGG | + | chr6_3:18298301-18298320 | None:intergenic | 25.0% |
| !! | TATGAATTTTGTACAATCCT+AGG | - | chr6_3:18298798-18298817 | Msa0942980:intron | 25.0% |
| ! | GAATAACTTAAGAAATGCTA+TGG | + | chr6_3:18298967-18298986 | None:intergenic | 25.0% |
| ! | AAATATTGATCACCAATTGT+TGG | - | chr6_3:18299104-18299123 | Msa0942980:intron | 25.0% |
| ! | AATATTGATCACCAATTGTT+GGG | - | chr6_3:18299105-18299124 | Msa0942980:intron | 25.0% |
| ! | ATAAAAGATCGTAAACATGA+GGG | - | chr6_3:18299211-18299230 | Msa0942980:intron | 25.0% |
| !!! | ACATGTGAATTTTGAAAACA+AGG | - | chr6_3:18299377-18299396 | Msa0942980:intron | 25.0% |
| ! | ATCATCATCATTATCATTGT+TGG | - | chr6_3:18299502-18299521 | Msa0942980:intron | 25.0% |
| ! | TTAAACCAATAAAGTGGTTT+GGG | + | chr6_3:18299574-18299593 | None:intergenic | 25.0% |
| ! | TTTAAACCAATAAAGTGGTT+TGG | + | chr6_3:18299575-18299594 | None:intergenic | 25.0% |
| ! | TGCTTATATTTCATTCCAAA+GGG | + | chr6_3:18299614-18299633 | None:intergenic | 25.0% |
| ! | TTGCTTATATTTCATTCCAA+AGG | + | chr6_3:18299615-18299634 | None:intergenic | 25.0% |
| ! | GGAATGAAATATAAGCAAAA+AGG | - | chr6_3:18299617-18299636 | Msa0942980:intron | 25.0% |
| ! | AAAAGGGTTATTATTGTATG+CGG | - | chr6_3:18299634-18299653 | Msa0942980:intron | 25.0% |
| ! | AGTTAAAAAGTCAATGTATG+TGG | + | chr6_3:18299673-18299692 | None:intergenic | 25.0% |
| !! | TAGCTTATATTTTATTCCAG+AGG | - | chr6_3:18299700-18299719 | Msa0942980:intron | 25.0% |
| !! | AGCTTATATTTTATTCCAGA+GGG | - | chr6_3:18299701-18299720 | Msa0942980:intron | 25.0% |
| ! | GGAATACATTACATTGAAAT+TGG | + | chr6_3:18300108-18300127 | None:intergenic | 25.0% |
| ! | CCTAAAAAAAAGACAAAAGA+CGG | + | chr6_3:18300129-18300148 | None:intergenic | 25.0% |
| ! | CGTAATGAAAAACTAAACAT+CGG | + | chr6_3:18300272-18300291 | None:intergenic | 25.0% |
| ! | TTTCACAAAAACCATATGAT+TGG | - | chr6_3:18300292-18300311 | Msa0942980:intron | 25.0% |
| ! | TTTAAATTCTGCTACACTAT+AGG | - | chr6_3:18300356-18300375 | Msa0942980:intron | 25.0% |
| ! | TTAAATTCTGCTACACTATA+GGG | - | chr6_3:18300357-18300376 | Msa0942980:intron | 25.0% |
| ! | TATTTGACAATACTGAATAC+AGG | - | chr6_3:18300501-18300520 | Msa0942980:intron | 25.0% |
| ! | ATTTGACAATACTGAATACA+GGG | - | chr6_3:18300502-18300521 | Msa0942980:intron | 25.0% |
| ! | GTATATCATGAAACAGAAAA+AGG | - | chr6_3:18300566-18300585 | Msa0942980:intron | 25.0% |
| ! | TGTATAAGCTATACAACTTA+TGG | - | chr6_3:18300619-18300638 | Msa0942980:intron | 25.0% |
| !!! | GATGTCCTTAGTTTTTTTTT+AGG | + | chr6_3:18300654-18300673 | None:intergenic | 25.0% |
| ! | TTAAGATGAGACAAATTTAG+CGG | + | chr6_3:18300762-18300781 | None:intergenic | 25.0% |
| !!! | TATTTTTTTCCCCTTTCTTT+TGG | + | chr6_3:18300946-18300965 | None:intergenic | 25.0% |
| ! | AGAAAGGGGAAAAAAATAAA+AGG | - | chr6_3:18300948-18300967 | Msa0942980:intron | 25.0% |
| ! | GAAAGGGGAAAAAAATAAAA+GGG | - | chr6_3:18300949-18300968 | Msa0942980:intron | 25.0% |
| ! | AAAGGGGAAAAAAATAAAAG+GGG | - | chr6_3:18300950-18300969 | Msa0942980:intron | 25.0% |
| !! | TCATTGAATCAAAGTATCAT+AGG | + | chr6_3:18301357-18301376 | None:intergenic | 25.0% |
| ! | TTATTAAAATTCCCATAAGC+AGG | - | chr6_3:18301588-18301607 | Msa0942980:intron | 25.0% |
| ! | TGCATTAAACAGAATCATAT+AGG | + | chr6_3:18301670-18301689 | None:intergenic | 25.0% |
| ! | AGATGAATCATATTCATAAC+CGG | + | chr6_3:18301811-18301830 | None:intergenic | 25.0% |
| ! | TAACCTTAGAAACATATTGA+CGG | + | chr6_3:18301835-18301854 | None:intergenic | 25.0% |
| !! | TGTTTAAAATTATGGCAAAC+TGG | - | chr6_3:18302383-18302402 | Msa0942980:intron | 25.0% |
| ! | TCAATTACCAAATTATTGCT+TGG | + | chr6_3:18302430-18302449 | None:intergenic | 25.0% |
| !! | GTTGCATTGTTATTCAATTA+AGG | - | chr6_3:18302472-18302491 | Msa0942980:intron | 25.0% |
| ! | TATATACATGACAAGATGAT+AGG | + | chr6_3:18302593-18302612 | None:intergenic | 25.0% |
| ! | AGCAAAATGAAAAATGGGTT+GGG | + | chr6_3:18295962-18295981 | None:intergenic | 30.0% |
| AAGCAAAATGAAAAATGGGT+TGG | + | chr6_3:18295963-18295982 | None:intergenic | 30.0% | |
| ! | TGTGAATTTAGGGTTAATTG+TGG | - | chr6_3:18296105-18296124 | Msa0942980:three_prime_UTR | 30.0% |
| GAATTGGTTGTATGCAAAAA+AGG | + | chr6_3:18296272-18296291 | None:intergenic | 30.0% | |
| ! | TTTTTGCATACAACCAATTC+AGG | - | chr6_3:18296272-18296291 | Msa0942980:CDS | 30.0% |
| TGTTAGCTCAAAAACCAAAA+GGG | + | chr6_3:18297089-18297108 | None:intergenic | 30.0% | |
| ATGTTAGCTCAAAAACCAAA+AGG | + | chr6_3:18297090-18297109 | None:intergenic | 30.0% | |
| !! | TACATACATAATTCTAGGAC+AGG | + | chr6_3:18297682-18297701 | None:intergenic | 30.0% |
| GTCCTAGAATTATGTATGTA+AGG | - | chr6_3:18297682-18297701 | Msa0942980:intron | 30.0% | |
| ACCCTTACATACATAATTCT+AGG | + | chr6_3:18297687-18297706 | None:intergenic | 30.0% | |
| ! | TGATTTGCATTATCATCAGA+AGG | - | chr6_3:18297742-18297761 | Msa0942980:intron | 30.0% |
| TCCTTGTATTTCTCCAATAT+AGG | - | chr6_3:18297971-18297990 | Msa0942980:intron | 30.0% | |
| CCTTGTATTTCTCCAATATA+GGG | - | chr6_3:18297972-18297991 | Msa0942980:intron | 30.0% | |
| TTCCATATTCTTCCCTATAT+TGG | + | chr6_3:18297987-18298006 | None:intergenic | 30.0% | |
| TTTCCCTTATGATTATTAGG+AGG | - | chr6_3:18298087-18298106 | Msa0942980:intron | 30.0% | |
| CTTCCTCCTAATAATCATAA+GGG | + | chr6_3:18298093-18298112 | None:intergenic | 30.0% | |
| TCTTCCTCCTAATAATCATA+AGG | + | chr6_3:18298094-18298113 | None:intergenic | 30.0% | |
| GTTTGGATTGAATAATTAGG+AGG | - | chr6_3:18298200-18298219 | Msa0942980:intron | 30.0% | |
| ATAATTAGGAGGGAAAAGAT+TGG | - | chr6_3:18298211-18298230 | Msa0942980:intron | 30.0% | |
| TAATTAGGAGGGAAAAGATT+GGG | - | chr6_3:18298212-18298231 | Msa0942980:intron | 30.0% | |
| GATATAGTCATAATCCTTCA+AGG | + | chr6_3:18298325-18298344 | None:intergenic | 30.0% | |
| !! | ATTTCACTGATTTAGGATTC+TGG | + | chr6_3:18298347-18298366 | None:intergenic | 30.0% |
| !! | ATACAGGATTTCACTGATTT+AGG | + | chr6_3:18298354-18298373 | None:intergenic | 30.0% |
| ACTCACATAACATAACAACA+TGG | + | chr6_3:18298694-18298713 | None:intergenic | 30.0% | |
| GCATATAAAATAGCATACGT+AGG | + | chr6_3:18298764-18298783 | None:intergenic | 30.0% | |
| ATACAACAGCAATGATTTGA+AGG | + | chr6_3:18298941-18298960 | None:intergenic | 30.0% | |
| TTTGAATTAAGTAGAACACC+TGG | - | chr6_3:18299079-18299098 | Msa0942980:intron | 30.0% | |
| ! | TTGGTGATCAATATTTATCC+AGG | + | chr6_3:18299100-18299119 | None:intergenic | 30.0% |
| ATATTGATCACCAATTGTTG+GGG | - | chr6_3:18299106-18299125 | Msa0942980:intron | 30.0% | |
| TTTCTATTATCCCCAACAAT+TGG | + | chr6_3:18299119-18299138 | None:intergenic | 30.0% | |
| ! | CAATGATAAAGATGATAGTG+AGG | + | chr6_3:18299144-18299163 | None:intergenic | 30.0% |
| !!! | TCAGGTTCAAGTTTTTAAGT+AGG | - | chr6_3:18299176-18299195 | Msa0942980:intron | 30.0% |
| !!! | CAGGTTCAAGTTTTTAAGTA+GGG | - | chr6_3:18299177-18299196 | Msa0942980:intron | 30.0% |
| GATAAAAGATCGTAAACATG+AGG | - | chr6_3:18299210-18299229 | Msa0942980:intron | 30.0% | |
| AACACCTTGTTAATAGATAG+CGG | + | chr6_3:18299430-18299449 | None:intergenic | 30.0% | |
| ! | CAATGATAATGATGATGATG+AGG | + | chr6_3:18299501-18299520 | None:intergenic | 30.0% |
| TTTAACCCAAACCACTTTAT+TGG | - | chr6_3:18299566-18299585 | Msa0942980:intron | 30.0% | |
| TTGTAAAATTATACTCCCTC+TGG | + | chr6_3:18299719-18299738 | None:intergenic | 30.0% | |
| ! | CCGTCTTTTGTCTTTTTTTT+AGG | - | chr6_3:18300126-18300145 | Msa0942980:intron | 30.0% |
| CCATGTTATGACTATCAAAA+TGG | + | chr6_3:18300152-18300171 | None:intergenic | 30.0% | |
| !! | CCATTTTGATAGTCATAACA+TGG | - | chr6_3:18300149-18300168 | Msa0942980:intron | 30.0% |
| !! | TTTTGATAGTCATAACATGG+CGG | - | chr6_3:18300152-18300171 | Msa0942980:intron | 30.0% |
| AAAAAAGATGCCATTCACTT+AGG | + | chr6_3:18300207-18300226 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTTCAAAGCTCTT+TGG | - | chr6_3:18300225-18300244 | Msa0942980:intron | 30.0% |
| ACAACATAACTCCAATCATA+TGG | + | chr6_3:18300306-18300325 | None:intergenic | 30.0% | |
| TTCTGTTTCATGATATACCT+CGG | + | chr6_3:18300564-18300583 | None:intergenic | 30.0% | |
| !! | TTGAAGTTTTTGCTATGATC+AGG | - | chr6_3:18300810-18300829 | Msa0942980:intron | 30.0% |
| TCGTTTGTACAAATTGGATA+GGG | - | chr6_3:18300895-18300914 | Msa0942980:intron | 30.0% | |
| TTGAAAATTATAGTCACACG+CGG | - | chr6_3:18301208-18301227 | Msa0942980:intron | 30.0% | |
| !!! | ACCATTGCTTTTTCAATCAA+TGG | - | chr6_3:18301263-18301282 | Msa0942980:intron | 30.0% |
| TGATTTGAACTGGCAATATT+TGG | + | chr6_3:18301451-18301470 | None:intergenic | 30.0% | |
| !! | TTGACAACATTGATTTGAAC+TGG | + | chr6_3:18301461-18301480 | None:intergenic | 30.0% |
| TCACAGATTGCTTAAATAAG+CGG | - | chr6_3:18301481-18301500 | Msa0942980:intron | 30.0% | |
| ! | AAACCATTGTTGTTAAATGG+CGG | + | chr6_3:18301643-18301662 | None:intergenic | 30.0% |
| ! | TTACAATTCTCTGAAGATGA+TGG | - | chr6_3:18302084-18302103 | Msa0942980:intron | 30.0% |
| !!! | ACGTATTGTTGCCATTTTAA+CGG | + | chr6_3:18302147-18302166 | None:intergenic | 30.0% |
| AATGCATTCATTGCAAAGAA+TGG | - | chr6_3:18302191-18302210 | Msa0942980:intron | 30.0% | |
| ATGCATTCATTGCAAAGAAT+GGG | - | chr6_3:18302192-18302211 | Msa0942980:intron | 30.0% | |
| TTCAGTAATTACAAGACTCA+TGG | - | chr6_3:18302252-18302271 | Msa0942980:CDS | 30.0% | |
| ! | GTTTATTTGGGATTTCGTAA+CGG | - | chr6_3:18302332-18302351 | Msa0942980:CDS | 30.0% |
| ATCTCAACCAAGCAATAATT+TGG | - | chr6_3:18302420-18302439 | Msa0942980:intron | 30.0% | |
| TTAGGGTTAATTGTGGAAGA+TGG | - | chr6_3:18296112-18296131 | Msa0942980:three_prime_UTR | 35.0% | |
| TAGGGTTAATTGTGGAAGAT+GGG | - | chr6_3:18296113-18296132 | Msa0942980:three_prime_UTR | 35.0% | |
| AGTGCATTTCAGAGAAGTAA+TGG | - | chr6_3:18296179-18296198 | Msa0942980:three_prime_UTR | 35.0% | |
| !! | TCAGAGAAGTAATGGTTTTG+TGG | - | chr6_3:18296187-18296206 | Msa0942980:three_prime_UTR | 35.0% |
| TTGGTTGTATGCAAAAAAGG+AGG | + | chr6_3:18296269-18296288 | None:intergenic | 35.0% | |
| ! | CAAAAAGGGTATACCTGAAT+TGG | + | chr6_3:18296288-18296307 | None:intergenic | 35.0% |
| TGTATGATATGGCAGATTGA+TGG | + | chr6_3:18296459-18296478 | None:intergenic | 35.0% | |
| !!! | TTGGCTTTGGTTTTTGTGAA+AGG | - | chr6_3:18296587-18296606 | Msa0942980:intron | 35.0% |
| !! | GATTTGGTGGAATACATCAT+TGG | - | chr6_3:18296726-18296745 | Msa0942980:intron | 35.0% |
| TAATATTGGGGAAATTGCAC+TGG | - | chr6_3:18296821-18296840 | Msa0942980:intron | 35.0% | |
| ! | GCAGATTGATGGTTTCTTAT+CGG | + | chr6_3:18296874-18296893 | None:intergenic | 35.0% |
| GAGAAAATAGAAGATGCACT+TGG | + | chr6_3:18296776-18296795 | None:intergenic | 35.0% | |
| ! | AATGACACATACAACCCTTT+TGG | - | chr6_3:18297072-18297091 | Msa0942980:intron | 35.0% |
| ATTTGCTCAACAAATAAGGG+TGG | + | chr6_3:18297128-18297147 | None:intergenic | 35.0% | |
| ! | ATTCTCTCTGGTGTCAATTT+AGG | + | chr6_3:18297327-18297346 | None:intergenic | 35.0% |
| AAATATCTGACCAATAGCAG+GGG | + | chr6_3:18297520-18297539 | None:intergenic | 35.0% | |
| GAAATATCTGACCAATAGCA+GGG | + | chr6_3:18297521-18297540 | None:intergenic | 35.0% | |
| AGAAATATCTGACCAATAGC+AGG | + | chr6_3:18297522-18297541 | None:intergenic | 35.0% | |
| AAGTATATCCTATACGACAC+TGG | + | chr6_3:18297896-18297915 | None:intergenic | 35.0% | |
| GTGTCGTATAGGATATACTT+TGG | - | chr6_3:18297896-18297915 | Msa0942980:intron | 35.0% | |
| CCCTATATTGGAGAAATACA+AGG | + | chr6_3:18297975-18297994 | None:intergenic | 35.0% | |
| CTCCAATATAGGGAAGAATA+TGG | - | chr6_3:18297982-18298001 | Msa0942980:intron | 35.0% | |
| AATTGCACTAATCATCCGTT+AGG | + | chr6_3:18298068-18298087 | None:intergenic | 35.0% | |
| CTACGCATTGTAGTCAAAAT+GGG | - | chr6_3:18298258-18298277 | Msa0942980:intron | 35.0% | |
| TACGCATTGTAGTCAAAATG+GGG | - | chr6_3:18298259-18298278 | Msa0942980:intron | 35.0% | |
| TACGATTAATGTTGCCTTGA+AGG | - | chr6_3:18298308-18298327 | Msa0942980:intron | 35.0% | |
| ! | ATTAACGGATGCGATTATAC+AGG | + | chr6_3:18298370-18298389 | None:intergenic | 35.0% |
| AATCGTAAAATCCACGATCT+TGG | - | chr6_3:18298395-18298414 | Msa0942980:CDS | 35.0% | |
| ! | ATGGATCGATTTCAAATCGT+GGG | - | chr6_3:18298484-18298503 | Msa0942980:CDS | 35.0% |
| GTCTCACAAGTTACTAAAAC+AGG | + | chr6_3:18298550-18298569 | None:intergenic | 35.0% | |
| ! | TAGTAACTTGTGAGACTTTC+TGG | - | chr6_3:18298554-18298573 | Msa0942980:intron | 35.0% |
| CTAGTTTAAGTGCATCATGT+TGG | - | chr6_3:18298591-18298610 | Msa0942980:intron | 35.0% | |
| AGAATCGTTACATGAATCCT+AGG | + | chr6_3:18298818-18298837 | None:intergenic | 35.0% | |
| CCTAAAAATATGTAAGGCGT+AGG | + | chr6_3:18298885-18298904 | None:intergenic | 35.0% | |
| ! | CCTACGCCTTACATATTTTT+AGG | - | chr6_3:18298882-18298901 | Msa0942980:intron | 35.0% |
| CAAGTGACAACTAAATGCTA+TGG | + | chr6_3:18298989-18299008 | None:intergenic | 35.0% | |
| AAACTTGAACCTGACTACAT+TGG | + | chr6_3:18299170-18299189 | None:intergenic | 35.0% | |
| ! | TACGATCTTTTATCAGCCTA+CGG | + | chr6_3:18299204-18299223 | None:intergenic | 35.0% |
| TCGTAACACGATTCATAAGT+AGG | - | chr6_3:18299234-18299253 | Msa0942980:intron | 35.0% | |
| ACACGATTCATAAGTAGGAT+TGG | - | chr6_3:18299239-18299258 | Msa0942980:intron | 35.0% | |
| ! | GATTCATAAGTAGGATTGGT+TGG | - | chr6_3:18299243-18299262 | Msa0942980:intron | 35.0% |
| ! | AGGTGTTCACTCTTTAGTTT+AGG | - | chr6_3:18299443-18299462 | Msa0942980:intron | 35.0% |
| ! | GTTTAGGTTCTATTCATGCA+AGG | - | chr6_3:18299459-18299478 | Msa0942980:intron | 35.0% |
| TATGCGTGAATAGACATACT+GGG | + | chr6_3:18299536-18299555 | None:intergenic | 35.0% | |
| ATGAAAATGCATACTCCCTT+TGG | - | chr6_3:18299596-18299615 | Msa0942980:intron | 35.0% | |
| AATTACAACCTTCAAGGAAG+TGG | + | chr6_3:18300041-18300060 | None:intergenic | 35.0% | |
| GAGTCAAATTACAACCTTCA+AGG | + | chr6_3:18300047-18300066 | None:intergenic | 35.0% | |
| TGAAGGTTGTAATTTGACTC+TGG | - | chr6_3:18300047-18300066 | Msa0942980:intron | 35.0% | |
| GCATTTATTGCCTAAGTGAA+TGG | - | chr6_3:18300194-18300213 | Msa0942980:intron | 35.0% | |
| TTGTCAAATAACGACTACAG+TGG | + | chr6_3:18300491-18300510 | None:intergenic | 35.0% | |
| CATGATATACCTCGGTAATT+GGG | + | chr6_3:18300556-18300575 | None:intergenic | 35.0% | |
| TCATGATATACCTCGGTAAT+TGG | + | chr6_3:18300557-18300576 | None:intergenic | 35.0% | |
| TAAGCACATGTGAGAATGTT+CGG | + | chr6_3:18300702-18300721 | None:intergenic | 35.0% | |
| GTCGTTTGTACAAATTGGAT+AGG | - | chr6_3:18300894-18300913 | Msa0942980:intron | 35.0% | |
| TATACCTCTTGCCAAAAGAA+AGG | - | chr6_3:18300932-18300951 | Msa0942980:intron | 35.0% | |
| ATACCTCTTGCCAAAAGAAA+GGG | - | chr6_3:18300933-18300952 | Msa0942980:intron | 35.0% | |
| ! | TTTCTTCCTTCGTTTTCACT+TGG | - | chr6_3:18300985-18301004 | Msa0942980:intron | 35.0% |
| ! | CATTTTCCAAGTGAAAACGA+AGG | + | chr6_3:18300994-18301013 | None:intergenic | 35.0% |
| ATCAGATTGATCGTTCTCAA+TGG | - | chr6_3:18301041-18301060 | Msa0942980:intron | 35.0% | |
| TCAGATTGATCGTTCTCAAT+GGG | - | chr6_3:18301042-18301061 | Msa0942980:intron | 35.0% | |
| TGAAAATTATAGTCACACGC+GGG | - | chr6_3:18301209-18301228 | Msa0942980:intron | 35.0% | |
| ! | GCCATTGATTGAAAAAGCAA+TGG | + | chr6_3:18301267-18301286 | None:intergenic | 35.0% |
| AGTCGAATTCCTGCTAATAA+AGG | - | chr6_3:18301305-18301324 | Msa0942980:intron | 35.0% | |
| !! | TTGTTAAATGGCGGATATAG+TGG | + | chr6_3:18301634-18301653 | None:intergenic | 35.0% |
| TATCCGCCATTTAACAACAA+TGG | - | chr6_3:18301637-18301656 | Msa0942980:intron | 35.0% | |
| AAGCTCACAATTTGCAGATT+TGG | - | chr6_3:18301773-18301792 | Msa0942980:intron | 35.0% | |
| ! | CTTCCGTCAATATGTTTCTA+AGG | - | chr6_3:18301829-18301848 | Msa0942980:intron | 35.0% |
| TTCTTAACATGTGCCTTTGA+GGG | + | chr6_3:18301904-18301923 | None:intergenic | 35.0% | |
| TTTCTTAACATGTGCCTTTG+AGG | + | chr6_3:18301905-18301924 | None:intergenic | 35.0% | |
| AACTTTGCATTGGGAAACAT+AGG | + | chr6_3:18301986-18302005 | None:intergenic | 35.0% | |
| AAAAGGGGTAACTTTGCATT+GGG | + | chr6_3:18301995-18302014 | None:intergenic | 35.0% | |
| ! | AATGCAAAGTTACCCCTTTT+GGG | - | chr6_3:18301995-18302014 | Msa0942980:intron | 35.0% |
| ACATGTTAAGGAACCCAAAA+GGG | + | chr6_3:18302011-18302030 | None:intergenic | 35.0% | |
| !! | CATGTTAACTTGTGTCCTAA+GGG | + | chr6_3:18302035-18302054 | None:intergenic | 35.0% |
| !! | TCATGTTAACTTGTGTCCTA+AGG | + | chr6_3:18302036-18302055 | None:intergenic | 35.0% |
| ! | TACTTTGTTTGTTTCAGAGC+TGG | - | chr6_3:18302107-18302126 | Msa0942980:intron | 35.0% |
| !!! | CGTATTGTTGCCATTTTAAC+GGG | + | chr6_3:18302146-18302165 | None:intergenic | 35.0% |
| TCATCGCTTGAATCTTTGAA+TGG | + | chr6_3:18302172-18302191 | None:intergenic | 35.0% | |
| AATTACAAGACTCATGGTGA+TGG | - | chr6_3:18302258-18302277 | Msa0942980:CDS | 35.0% | |
| ! | AACGGCTTTTGTTAATGAGA+TGG | - | chr6_3:18302350-18302369 | Msa0942980:exon | 35.0% |
| CTTGGTTGAGATTCAAGATA+TGG | + | chr6_3:18302412-18302431 | None:intergenic | 35.0% | |
| GGAATATACAAGCTGCTCAT+TGG | - | chr6_3:18296517-18296536 | Msa0942980:intron | 40.0% | |
| TGTATGACATGGCAGATTGA+TGG | + | chr6_3:18296686-18296705 | None:intergenic | 40.0% | |
| TGTACAACATGGCAGATTGA+TGG | + | chr6_3:18296885-18296904 | None:intergenic | 40.0% | |
| ! | TCTCTGGTGTCAATTTAGGT+GGG | + | chr6_3:18297323-18297342 | None:intergenic | 40.0% |
| AACACCTGTTAGAAACGTCT+TGG | - | chr6_3:18297470-18297489 | Msa0942980:intron | 40.0% | |
| GGGAAGAATATGGAACATAG+AGG | - | chr6_3:18297992-18298011 | Msa0942980:intron | 40.0% | |
| !!! | CCATTTTGACTACAATGCGT+AGG | + | chr6_3:18298260-18298279 | None:intergenic | 40.0% |
| CCTACGCATTGTAGTCAAAA+TGG | - | chr6_3:18298257-18298276 | Msa0942980:intron | 40.0% | |
| TAAAATCCACGATCTTGGAG+TGG | - | chr6_3:18298400-18298419 | Msa0942980:CDS | 40.0% | |
| ! | GATGGATCGATTTCAAATCG+TGG | - | chr6_3:18298483-18298502 | Msa0942980:CDS | 40.0% |
| AGAAACCCGTTTCAGTAACT+CGG | - | chr6_3:18298511-18298530 | Msa0942980:intron | 40.0% | |
| TGCAACTTTACCTCCTCTTA+CGG | - | chr6_3:18298844-18298863 | Msa0942980:intron | 40.0% | |
| TAGTCAAAATCCGTAAGAGG+AGG | + | chr6_3:18298857-18298876 | None:intergenic | 40.0% | |
| AGGTAGTCAAAATCCGTAAG+AGG | + | chr6_3:18298860-18298879 | None:intergenic | 40.0% | |
| AAATATGTAAGGCGTAGGAG+AGG | + | chr6_3:18298880-18298899 | None:intergenic | 40.0% | |
| AATAGGACACTGCTACGTAT+TGG | + | chr6_3:18299012-18299031 | None:intergenic | 40.0% | |
| TCATTGTTGCCAATGTAGTC+AGG | - | chr6_3:18299158-18299177 | Msa0942980:intron | 40.0% | |
| !!! | AGTTTTTAAGTAGGGTCCGT+AGG | - | chr6_3:18299185-18299204 | Msa0942980:intron | 40.0% |
| ! | GATTGGTTGGTTGTTGATAC+TGG | - | chr6_3:18299256-18299275 | Msa0942980:intron | 40.0% |
| TATGTGTGCGCGTTTACATT+TGG | - | chr6_3:18299343-18299362 | Msa0942980:intron | 40.0% | |
| GTCACCGCTATCTATTAACA+AGG | - | chr6_3:18299423-18299442 | Msa0942980:intron | 40.0% | |
| GTATGCGTGAATAGACATAC+TGG | + | chr6_3:18299537-18299556 | None:intergenic | 40.0% | |
| ! | TGTTTTCCCATTCTCTTGTC+AGG | - | chr6_3:18299958-18299977 | Msa0942980:intron | 40.0% |
| GTCAAACCTGACAAGAGAAT+GGG | + | chr6_3:18299967-18299986 | None:intergenic | 40.0% | |
| TGTCAAACCTGACAAGAGAA+TGG | + | chr6_3:18299968-18299987 | None:intergenic | 40.0% | |
| CTCTTGTCAGGTTTGACATA+TGG | - | chr6_3:18299970-18299989 | Msa0942980:intron | 40.0% | |
| TGTCAGGTTTGACATATGGT+AGG | - | chr6_3:18299974-18299993 | Msa0942980:intron | 40.0% | |
| TTGACATATGGTAGGCTGAT+CGG | - | chr6_3:18299982-18300001 | Msa0942980:intron | 40.0% | |
| GATATCATCCACTTCCTTGA+AGG | - | chr6_3:18300030-18300049 | Msa0942980:intron | 40.0% | |
| GACTCTGGACGATGTTAAAA+TGG | - | chr6_3:18300062-18300081 | Msa0942980:intron | 40.0% | |
| TGGAGTTATGTTGTCAATCG+CGG | - | chr6_3:18300312-18300331 | Msa0942980:intron | 40.0% | |
| AGAATGTTCGGGAGAACTTA+TGG | + | chr6_3:18300690-18300709 | None:intergenic | 40.0% | |
| AAGCACATGTGAGAATGTTC+GGG | + | chr6_3:18300701-18300720 | None:intergenic | 40.0% | |
| AGACAAATTTAGCGGCTGTT+TGG | + | chr6_3:18300754-18300773 | None:intergenic | 40.0% | |
| ! | TGTCATAGGCACTGTAAGTA+GGG | + | chr6_3:18300847-18300866 | None:intergenic | 40.0% |
| ! | TTGTCATAGGCACTGTAAGT+AGG | + | chr6_3:18300848-18300867 | None:intergenic | 40.0% |
| GAAGGGTCGTTTGTACAAAT+TGG | - | chr6_3:18300889-18300908 | Msa0942980:intron | 40.0% | |
| TACCTCTTGCCAAAAGAAAG+GGG | - | chr6_3:18300934-18300953 | Msa0942980:intron | 40.0% | |
| CTTACAGTTCTTCCATCGTA+TGG | + | chr6_3:18301079-18301098 | None:intergenic | 40.0% | |
| ACACGCGGGATAATAAACTA+TGG | - | chr6_3:18301223-18301242 | Msa0942980:intron | 40.0% | |
| ATGGCTATTCCTCATTTCAG+AGG | - | chr6_3:18301282-18301301 | Msa0942980:intron | 40.0% | |
| !! | AATTCGACTCCTCTGAAATG+AGG | + | chr6_3:18301294-18301313 | None:intergenic | 40.0% |
| GCTATAGCATTGTAACGTAG+CGG | + | chr6_3:18301519-18301538 | None:intergenic | 40.0% | |
| !! | ATGTTAACTTGTGCCCTCAA+AGG | - | chr6_3:18301888-18301907 | Msa0942980:intron | 40.0% |
| CAAAAGGGGTAACTTTGCAT+TGG | + | chr6_3:18301996-18302015 | None:intergenic | 40.0% | |
| ! | CAATGCAAAGTTACCCCTTT+TGG | - | chr6_3:18301994-18302013 | Msa0942980:intron | 40.0% |
| CATGTTAAGGAACCCAAAAG+GGG | + | chr6_3:18302010-18302029 | None:intergenic | 40.0% | |
| CACATGTTAAGGAACCCAAA+AGG | + | chr6_3:18302012-18302031 | None:intergenic | 40.0% | |
| GGGTAATGAACCCGTTAAAA+TGG | - | chr6_3:18302133-18302152 | Msa0942980:intron | 40.0% | |
| GTATCGAAATGCGATTGTTG+AGG | + | chr6_3:18302226-18302245 | None:intergenic | 40.0% | |
| ! | AGTTTTACACCGTCATCCAA+TGG | - | chr6_3:18302565-18302584 | Msa0942980:intron | 40.0% |
| TTTCTGCTACGATCGCTGAA+AGG | + | chr6_3:18295890-18295909 | None:intergenic | 45.0% | |
| CGTAGCAGAAAAAACCGAAC+AGG | - | chr6_3:18295899-18295918 | Msa0942980:three_prime_UTR | 45.0% | |
| GTAGCAGTTGTTGAATCCTG+TGG | + | chr6_3:18296245-18296264 | None:intergenic | 45.0% | |
| ! | AGACTTTAATGGGCATGCAC+TGG | - | chr6_3:18296395-18296414 | Msa0942980:intron | 45.0% |
| CAACAAATAAGGGTGGTGAC+TGG | + | chr6_3:18297121-18297140 | None:intergenic | 45.0% | |
| CATCTCCTAAGTGATGTGTC+AGG | - | chr6_3:18297182-18297201 | Msa0942980:intron | 45.0% | |
| ACATGCCTGACACATCACTT+AGG | + | chr6_3:18297190-18297209 | None:intergenic | 45.0% | |
| TTCAAGGTGTGTCCAAGAAG+TGG | + | chr6_3:18297236-18297255 | None:intergenic | 45.0% | |
| GAGTGTCTGGCACATATTCA+AGG | + | chr6_3:18297252-18297271 | None:intergenic | 45.0% | |
| ! | CTCTCTGGTGTCAATTTAGG+TGG | + | chr6_3:18297324-18297343 | None:intergenic | 45.0% |
| GTCTCAGGTTTGATTCTCTC+TGG | + | chr6_3:18297339-18297358 | None:intergenic | 45.0% | |
| ! | GTGGTATTAGCTTGGGATCT+GGG | + | chr6_3:18297380-18297399 | None:intergenic | 45.0% |
| ! | AGTGGTATTAGCTTGGGATC+TGG | + | chr6_3:18297381-18297400 | None:intergenic | 45.0% |
| GATCCCAAGCTAATACCACT+AGG | - | chr6_3:18297381-18297400 | Msa0942980:intron | 45.0% | |
| ! | TGGCCTAGTGGTATTAGCTT+GGG | + | chr6_3:18297387-18297406 | None:intergenic | 45.0% |
| TTGGCCTAGTGGTATTAGCT+TGG | + | chr6_3:18297388-18297407 | None:intergenic | 45.0% | |
| GCATCCAAGACGTTTCTAAC+AGG | + | chr6_3:18297477-18297496 | None:intergenic | 45.0% | |
| ATTGTGCTCCAGTGTCGTAT+AGG | - | chr6_3:18297885-18297904 | Msa0942980:intron | 45.0% | |
| AGGAGGGAAAAGATTGGGTT+TGG | - | chr6_3:18298217-18298236 | Msa0942980:intron | 45.0% | |
| GGAGGGAAAAGATTGGGTTT+GGG | - | chr6_3:18298218-18298237 | Msa0942980:intron | 45.0% | |
| ! | ACTCTAGGGGTTAGGAAAGA+TGG | - | chr6_3:18298465-18298484 | Msa0942980:CDS | 45.0% |
| GAAACCCGTTTCAGTAACTC+GGG | - | chr6_3:18298512-18298531 | Msa0942980:intron | 45.0% | |
| TTGACCCGAGTTACTGAAAC+GGG | + | chr6_3:18298519-18298538 | None:intergenic | 45.0% | |
| CTTGACCCGAGTTACTGAAA+CGG | + | chr6_3:18298520-18298539 | None:intergenic | 45.0% | |
| TAAGTGCATCATGTTGGTGC+TGG | - | chr6_3:18298597-18298616 | Msa0942980:intron | 45.0% | |
| ACCTAGTCGCTGCTATCTAT+TGG | - | chr6_3:18299859-18299878 | Msa0942980:intron | 45.0% | |
| !! | TCGCTGCTATCTATTGGCTT+TGG | - | chr6_3:18299865-18299884 | Msa0942980:intron | 45.0% |
| ! | ATGTTGTCAATCGCGGATTG+CGG | - | chr6_3:18300319-18300338 | Msa0942980:intron | 45.0% |
| !! | AACGACTACAGTGGTGCTAT+AGG | + | chr6_3:18300482-18300501 | None:intergenic | 45.0% |
| GCAAATGATCCCAATTACCG+AGG | - | chr6_3:18300544-18300563 | Msa0942980:intron | 45.0% | |
| CACGCGTATAGCATTGTCAT+AGG | + | chr6_3:18300861-18300880 | None:intergenic | 45.0% | |
| GACAATGCTATACGCGTGAT+CGG | - | chr6_3:18300863-18300882 | Msa0942980:intron | 45.0% | |
| ! | TTCCCCTTTCTTTTGGCAAG+AGG | + | chr6_3:18300939-18300958 | None:intergenic | 45.0% |
| GACATCGTTACTCCATACGA+TGG | - | chr6_3:18301064-18301083 | Msa0942980:intron | 45.0% | |
| TCTGCAAATTGTGAGCTTCG+TGG | + | chr6_3:18301771-18301790 | None:intergenic | 45.0% | |
| GATTTGGATCAGATCGTGTC+CGG | - | chr6_3:18301789-18301808 | Msa0942980:intron | 45.0% | |
| GTTCCTTAACATGTGCCCTT+AGG | - | chr6_3:18302017-18302036 | Msa0942980:intron | 45.0% | |
| ! | TGTCCTAAGGGCACATGTTA+AGG | + | chr6_3:18302023-18302042 | None:intergenic | 45.0% |
| TGTTTGTTTCAGAGCTGGAG+AGG | - | chr6_3:18302112-18302131 | Msa0942980:intron | 45.0% | |
| GTTTGTTTCAGAGCTGGAGA+GGG | - | chr6_3:18302113-18302132 | Msa0942980:intron | 45.0% | |
| !! | ACTCATGGTGATGGTTCTGT+AGG | - | chr6_3:18302267-18302286 | Msa0942980:CDS | 45.0% |
| !! | TGATAGGTGCCATTGGATGA+CGG | + | chr6_3:18302577-18302596 | None:intergenic | 45.0% |
| ! | GACAAGATGATAGGTGCCAT+TGG | + | chr6_3:18302584-18302603 | None:intergenic | 45.0% |
| !!! | AATTTTTATATTGATATTTA+TGG | - | chr6_3:18296043-18296062 | Msa0942980:three_prime_UTR | 5.0% |
| !! | CAAAAAAAAAAAAAAAAAAT+TGG | + | chr6_3:18297285-18297304 | None:intergenic | 5.0% |
| !!! | AATATAAATTTTGAAATTAT+TGG | - | chr6_3:18299044-18299063 | Msa0942980:intron | 5.0% |
| !!! | GTATATATTATTTTTTTAAT+TGG | - | chr6_3:18301862-18301881 | Msa0942980:intron | 5.0% |
| TGAAGCTGAAAAGCCACCAC+AGG | - | chr6_3:18296226-18296245 | Msa0942980:exon | 50.0% | |
| GCAGTTGTTGAATCCTGTGG+TGG | + | chr6_3:18296242-18296261 | None:intergenic | 50.0% | |
| ! | CTTTAATGGGCATGCACTGG+CGG | - | chr6_3:18296398-18296417 | Msa0942980:intron | 50.0% |
| AGGCATGTTAGACGCGATTC+AGG | - | chr6_3:18297202-18297221 | Msa0942980:intron | 50.0% | |
| GTGTGTCCAAGAAGTGGTGT+CGG | + | chr6_3:18297230-18297249 | None:intergenic | 50.0% | |
| !! | TGGACACGGTTAAGAGTGTC+TGG | + | chr6_3:18297265-18297284 | None:intergenic | 50.0% |
| GAATCAAACCTGAGACCTCG+AGG | - | chr6_3:18297343-18297362 | Msa0942980:intron | 50.0% | |
| TGGACACGGTTAACCCACTT+GGG | + | chr6_3:18297411-18297430 | None:intergenic | 50.0% | |
| TTGGACACGGTTAACCCACT+TGG | + | chr6_3:18297412-18297431 | None:intergenic | 50.0% | |
| TACCACTGCAACCTGGAATG+CGG | + | chr6_3:18298429-18298448 | None:intergenic | 50.0% | |
| GCCAATAGATAGCAGCGACT+AGG | + | chr6_3:18299863-18299882 | None:intergenic | 50.0% | |
| ATGCTATACGCGTGATCGGA+AGG | - | chr6_3:18300867-18300886 | Msa0942980:intron | 50.0% | |
| TATACGCGTGATCGGAAGGA+AGG | - | chr6_3:18300871-18300890 | Msa0942980:intron | 50.0% | |
| ATACGCGTGATCGGAAGGAA+GGG | - | chr6_3:18300872-18300891 | Msa0942980:intron | 50.0% | |
| GCTGTAGCACACCTGCTTAT+GGG | + | chr6_3:18301602-18301621 | None:intergenic | 50.0% | |
| TCAAACCTGAGACCTCGAGG+AGG | - | chr6_3:18297346-18297365 | Msa0942980:intron | 55.0% | |
| TACCACTAGGCCAACCCAAG+TGG | - | chr6_3:18297394-18297413 | Msa0942980:CDS | 55.0% | |
| ACCACTAGGCCAACCCAAGT+GGG | - | chr6_3:18297395-18297414 | Msa0942980:CDS | 55.0% | |
| CACGGTTAACCCACTTGGGT+TGG | + | chr6_3:18297407-18297426 | None:intergenic | 55.0% | |
| ACTGAGCTGACCCCTGCTAT+TGG | - | chr6_3:18297507-18297526 | Msa0942980:intron | 55.0% | |
| CGGAATCCACTCCAAGATCG+TGG | + | chr6_3:18298409-18298428 | None:intergenic | 55.0% | |
| ! | TGGAGTGGATTCCGCATTCC+AGG | - | chr6_3:18298415-18298434 | Msa0942980:CDS | 55.0% |
| TTCCGCATTCCAGGTTGCAG+TGG | - | chr6_3:18298424-18298443 | Msa0942980:CDS | 55.0% | |
| CGACTTCTACCACTGCAACC+TGG | + | chr6_3:18298436-18298455 | None:intergenic | 55.0% | |
| TGCAGTGGTAGAAGTCGCGA+CGG | - | chr6_3:18298439-18298458 | Msa0942980:CDS | 55.0% | |
| CGCTGTAGCACACCTGCTTA+TGG | + | chr6_3:18301603-18301622 | None:intergenic | 55.0% | |
| !! | CAGGCACCGACACCACTTCT+TGG | - | chr6_3:18297221-18297240 | Msa0942980:intron | 60.0% |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | + | chr6_3:18297399-18297418 | None:intergenic | 60.0% |
| CAGGGGTCAGCTCAGTCTCT+TGG | + | chr6_3:18297503-18297522 | None:intergenic | 60.0% | |
| AAGTCGCGACGGTGCACTCT+AGG | - | chr6_3:18298450-18298469 | Msa0942980:CDS | 60.0% | |
| AGTCGCGACGGTGCACTCTA+GGG | - | chr6_3:18298451-18298470 | Msa0942980:CDS | 60.0% | |
| ! | GACGGTGCACTCTAGGGGTT+AGG | - | chr6_3:18298457-18298476 | Msa0942980:CDS | 60.0% |
| GTGCTCCTCCTCGAGGTCTC+AGG | + | chr6_3:18297354-18297373 | None:intergenic | 65.0% | |
| ! | TGGGAGTGTGCTCCTCCTCG+AGG | + | chr6_3:18297361-18297380 | None:intergenic | 65.0% |
| GTCGCGACGGTGCACTCTAG+GGG | - | chr6_3:18298452-18298471 | Msa0942980:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 18295854 | 18302632 | 18295854 | ID=Msa0942980;Name=Msa0942980 |
| chr6_3 | mRNA | 18295854 | 18302632 | 18295854 | ID=Msa0942980-mRNA-1;Parent=Msa0942980;Name=Msa0942980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=82|1|1|1|0.83|0.71|7|373|222 |
| chr6_3 | exon | 18295854 | 18296362 | 18295854 | ID=Msa0942980-mRNA-1:exon:5514;Parent=Msa0942980-mRNA-1 |
| chr6_3 | exon | 18296636 | 18296736 | 18296636 | ID=Msa0942980-mRNA-1:exon:5513;Parent=Msa0942980-mRNA-1 |
| chr6_3 | exon | 18297393 | 18297440 | 18297393 | ID=Msa0942980-mRNA-1:exon:5512;Parent=Msa0942980-mRNA-1 |
| chr6_3 | exon | 18297570 | 18297654 | 18297570 | ID=Msa0942980-mRNA-1:exon:5511;Parent=Msa0942980-mRNA-1 |
| chr6_3 | exon | 18298371 | 18298506 | 18298371 | ID=Msa0942980-mRNA-1:exon:5510;Parent=Msa0942980-mRNA-1 |
| chr6_3 | exon | 18302193 | 18302370 | 18302193 | ID=Msa0942980-mRNA-1:exon:5509;Parent=Msa0942980-mRNA-1 |
| chr6_3 | exon | 18302566 | 18302632 | 18302566 | ID=Msa0942980-mRNA-1:exon:5508;Parent=Msa0942980-mRNA-1 |
| chr6_3 | five_prime_UTR | 18302566 | 18302632 | 18302566 | ID=Msa0942980-mRNA-1:five_prime_utr;Parent=Msa0942980-mRNA-1 |
| chr6_3 | five_prime_UTR | 18302356 | 18302370 | 18302356 | ID=Msa0942980-mRNA-1:five_prime_utr;Parent=Msa0942980-mRNA-1 |
| chr6_3 | CDS | 18302193 | 18302355 | 18302193 | ID=Msa0942980-mRNA-1:cds;Parent=Msa0942980-mRNA-1 |
| chr6_3 | CDS | 18298371 | 18298506 | 18298371 | ID=Msa0942980-mRNA-1:cds;Parent=Msa0942980-mRNA-1 |
| chr6_3 | CDS | 18297570 | 18297654 | 18297570 | ID=Msa0942980-mRNA-1:cds;Parent=Msa0942980-mRNA-1 |
| chr6_3 | CDS | 18297393 | 18297440 | 18297393 | ID=Msa0942980-mRNA-1:cds;Parent=Msa0942980-mRNA-1 |
| chr6_3 | CDS | 18296636 | 18296736 | 18296636 | ID=Msa0942980-mRNA-1:cds;Parent=Msa0942980-mRNA-1 |
| chr6_3 | CDS | 18296227 | 18296362 | 18296227 | ID=Msa0942980-mRNA-1:cds;Parent=Msa0942980-mRNA-1 |
| chr6_3 | three_prime_UTR | 18295854 | 18296226 | 18295854 | ID=Msa0942980-mRNA-1:three_prime_utr;Parent=Msa0942980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
