AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0943490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0943490 MtrunA17_Chr6g0460381 90.863 197 16 1 1 195 2 198 1.69e-97 281
Msa0943490 MtrunA17_Chr6g0460461 63.087 149 52 1 1 149 1 146 1.33e-46 152
Msa0943490 MtrunA17_Chr6g0460411 62.416 149 53 1 1 149 1 146 1.09e-44 147
Msa0943490 MtrunA17_Chr2g0282741 38.043 92 52 2 1 92 3 89 7.58e-14 68.6
Msa0943490 MtrunA17_Chr2g0333221 44.706 85 36 2 2 81 70 148 9.40e-14 68.9
Msa0943490 MtrunA17_Chr4g0040501 40.698 86 47 1 1 86 3 84 1.27e-13 68.2
Msa0943490 MtrunA17_Chr2g0282761 37.363 91 51 2 1 89 3 89 1.60e-13 67.8
Msa0943490 MtrunA17_Chr2g0324921 35.238 105 50 2 1 91 3 103 1.29e-12 65.1
Msa0943490 MtrunA17_Chr7g0263971 47.059 68 32 1 2 69 369 432 3.90e-12 64.3
Msa0943490 MtrunA17_Chr4g0021141 38.235 68 37 1 2 69 22 84 5.93e-12 60.5
Msa0943490 MtrunA17_Chr4g0006391 42.029 69 36 1 1 69 3 67 6.10e-12 63.2
Msa0943490 MtrunA17_Chr4g0061421 50.000 64 31 1 3 66 9 71 8.12e-12 63.2
Msa0943490 MtrunA17_Chr7g0242951 44.928 69 32 2 1 69 26 88 1.13e-11 62.8
Msa0943490 MtrunA17_Chr3g0138471 43.077 65 33 1 1 65 3 63 1.68e-11 62.0
Msa0943490 MtrunA17_Chr7g0271891 41.791 67 38 1 3 69 17 82 1.74e-11 60.1
Msa0943490 MtrunA17_Chr3g0123861 43.243 74 36 1 2 75 82 149 2.32e-11 62.0
Msa0943490 MtrunA17_Chr8g0344721 46.154 65 34 1 2 65 10 74 9.61e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0943490 AT2G41000.1 46.875 192 89 3 1 189 2 183 1.05e-42 142
Msa0943490 AT2G41000.2 43.784 185 83 4 1 178 2 172 5.36e-34 120
Msa0943490 AT5G25530.2 32.258 124 77 2 1 124 3 119 3.48e-14 70.1
Msa0943490 AT1G80030.4 40.230 87 45 2 2 88 75 154 2.95e-13 67.8
Msa0943490 AT1G80030.2 40.230 87 45 2 2 88 75 154 3.44e-13 67.8
Msa0943490 AT1G80030.3 40.230 87 45 2 2 88 75 154 3.44e-13 67.8
Msa0943490 AT1G80030.1 40.230 87 45 2 2 88 75 154 3.44e-13 67.8
Msa0943490 AT1G10350.1 32.456 114 69 2 1 114 3 108 4.37e-13 67.0
Msa0943490 AT4G28480.2 38.372 86 49 1 1 86 3 84 4.71e-13 66.6
Msa0943490 AT5G01390.3 46.970 66 31 1 1 66 3 64 5.30e-13 65.9
Msa0943490 AT4G28480.1 37.931 87 50 1 1 87 3 85 5.71e-13 66.6
Msa0943490 AT5G01390.4 46.970 66 31 1 1 66 3 64 9.51e-13 65.1
Msa0943490 AT5G01390.2 46.970 66 31 1 1 66 3 64 1.29e-12 65.1
Msa0943490 AT3G08910.1 33.333 132 80 3 1 128 3 130 1.34e-12 65.5
Msa0943490 AT5G16650.1 42.029 69 35 1 2 70 11 74 1.34e-12 62.4
Msa0943490 AT5G01390.1 46.970 66 31 1 1 66 3 64 1.53e-12 65.5
Msa0943490 AT2G33735.1 44.118 68 33 1 2 69 22 84 2.75e-12 61.2
Msa0943490 AT2G33735.2 44.118 68 33 1 2 69 22 84 2.75e-12 61.2
Msa0943490 AT5G16650.2 42.029 69 35 1 2 70 11 74 3.42e-12 62.4
Msa0943490 AT4G39960.1 42.529 87 43 2 2 88 85 164 3.62e-12 64.7
Msa0943490 AT4G39960.2 42.529 87 43 2 2 88 85 164 3.62e-12 64.7
Msa0943490 AT2G22360.1 41.379 87 44 2 2 88 86 165 5.97e-12 63.9
Msa0943490 AT5G25530.1 30.303 132 77 3 1 124 3 127 1.31e-11 62.8
Msa0943490 AT1G59725.1 37.681 69 40 1 1 69 3 68 1.33e-11 62.8
Msa0943490 AT1G56300.1 40.299 67 39 1 3 69 14 79 1.41e-11 60.5
Msa0943490 AT1G56300.2 40.299 67 39 1 3 69 14 79 1.59e-11 59.3

Find 107 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATTGGAATTGGATTT+TGG 0.131469 6_3:+19301082 None:intergenic
CTCATCAAACCACCTAAATT+TGG 0.145054 6_3:+19297082 None:intergenic
ATTCAAGTGGAGAATCTTTA+TGG 0.183653 6_3:-19298144 Msa0943490:CDS
TGCTTTCTCAATGGTGTTCA+TGG 0.193983 6_3:+19297661 None:intergenic
AGTCACGCTGTCGTAGATTT+AGG 0.208884 6_3:-19297332 Msa0943490:three_prime_UTR
ATGGATCATTACAAGGTTCT+AGG 0.263008 6_3:-19301041 Msa0943490:CDS
CGGTGGCGGGCCGGTGGTGG+TGG 0.264231 6_3:-19300831 Msa0943490:CDS
GTTAGCATGTATTCCATATA+CGG 0.264525 6_3:-19297372 Msa0943490:three_prime_UTR
GATGATTGAGAATGCTTATC+TGG 0.265847 6_3:+19300951 None:intergenic
TTATGGAAGATGCAAAATTC+TGG 0.280003 6_3:-19298127 Msa0943490:CDS
ATAATGGAAGCTTTCAGTTT+TGG 0.281002 6_3:-19297535 Msa0943490:three_prime_UTR
GTATTCCATATACGGGATAT+TGG 0.286878 6_3:-19297364 Msa0943490:three_prime_UTR
CGAAACCCAATCCCAAATTT+AGG 0.300897 6_3:-19297094 Msa0943490:three_prime_UTR
TGGCGGGCCGGTGGTGGTGG+AGG 0.303703 6_3:-19300828 Msa0943490:CDS
GGGAGTGGAAGTGGTTATTA+TGG 0.315320 6_3:-19300732 Msa0943490:CDS
ATTGGATTAAAAGCAGTTAA+TGG 0.317244 6_3:-19297307 Msa0943490:three_prime_UTR
AGAATCCAATATCCCGTATA+TGG 0.336125 6_3:+19297359 None:intergenic
AGGTCTTCGCTTCTTAATCT+TGG 0.342811 6_3:-19300633 Msa0943490:CDS
GAAATTAGATTTGTGGAAGT+TGG 0.350924 6_3:-19297047 Msa0943490:three_prime_UTR
AGTGGGTCTGGTGGTGGTGG+TGG 0.352753 6_3:-19300705 Msa0943490:CDS
GTATGAATTGGAATTGGAAT+TGG 0.365192 6_3:+19301075 None:intergenic
TCATCAAACCACCTAAATTT+GGG 0.369666 6_3:+19297083 None:intergenic
ATATTACTGAGGTTGAAATC+TGG 0.370789 6_3:-19297194 Msa0943490:three_prime_UTR
TTCTTGTCCAGAGCTATATT+AGG 0.379393 6_3:-19298184 Msa0943490:intron
TCTCAGTATAGTTATGGATA+TGG 0.379723 6_3:-19300768 Msa0943490:CDS
TATCAGTCTCAGTATAGTTA+TGG 0.382531 6_3:-19300774 Msa0943490:CDS
AACCACCTAAATTTGGGATT+GGG 0.388063 6_3:+19297089 None:intergenic
AGAAGTGGGTCTGGTGGTGG+TGG 0.391572 6_3:-19300708 Msa0943490:CDS
GTCACGCTGTCGTAGATTTA+GGG 0.397873 6_3:-19297331 Msa0943490:three_prime_UTR
AAACCACCTAAATTTGGGAT+TGG 0.399641 6_3:+19297088 None:intergenic
GTTTAAGAAATAGTGAATAA+TGG 0.402577 6_3:-19297551 Msa0943490:three_prime_UTR
GGTAGAAGTGGGAGTGGGAG+TGG 0.402944 6_3:-19300747 Msa0943490:CDS
TACCGGTGGCGGGCCGGTGG+TGG 0.407341 6_3:-19300834 Msa0943490:CDS
TTGTGTTCTGAGAAAGGAAA+AGG 0.408165 6_3:+19301172 None:intergenic
GGTAGAAGTGGGTCTGGTGG+TGG 0.415092 6_3:-19300711 Msa0943490:CDS
TTTAATTACCGGTGGCGGGC+CGG 0.416158 6_3:-19300840 Msa0943490:CDS
AGTGGGAGTGGGAGTGGAAG+TGG 0.420037 6_3:-19300741 Msa0943490:CDS
AACTGCTAAATAAATGGAAC+AGG 0.427122 6_3:+19296827 None:intergenic
TGATCAAGAACGAATGGTTC+AGG 0.432345 6_3:-19297246 Msa0943490:three_prime_UTR
TATGGAAGATGCAAAATTCT+GGG 0.433386 6_3:-19298126 Msa0943490:CDS
GGAAAATTGTGTTCTGAGAA+AGG 0.437347 6_3:+19301166 None:intergenic
TATTATGGTAGAAGTGGGTC+TGG 0.450600 6_3:-19300717 Msa0943490:CDS
GGTGGTGGTGGAGGAAGTGC+CGG 0.451816 6_3:-19300819 Msa0943490:CDS
GCAGGTTTCTGAAGCGTATG+AGG 0.452788 6_3:-19300892 Msa0943490:CDS
CTGAGTTTAATTACCGGTGG+CGG 0.463016 6_3:-19300845 Msa0943490:CDS
TGAGTTTAATTACCGGTGGC+GGG 0.466806 6_3:-19300844 Msa0943490:CDS
CTGTCGTAGATTTAGGGGAT+TGG 0.468073 6_3:-19297325 Msa0943490:three_prime_UTR
AGACTGATAATAATAGTTAC+CGG 0.471216 6_3:+19300788 None:intergenic
AGTCCGATCTTGATCGTGTT+CGG 0.471830 6_3:-19297169 Msa0943490:three_prime_UTR
AAAAGGGAAAGAAAATTTCA+TGG 0.478059 6_3:+19301189 None:intergenic
TTACAATTGCACAAGTAACT+AGG 0.480406 6_3:+19297403 None:intergenic
ACCATTCGTTCTTGATCAGA+TGG 0.486440 6_3:+19297251 None:intergenic
AGTTATGGATATGGTAGAAG+TGG 0.488178 6_3:-19300759 Msa0943490:CDS
GATGGCTGAAATTAGATTTG+TGG 0.492102 6_3:-19297054 Msa0943490:three_prime_UTR
AACGCGCTGAGTTTAATTAC+CGG 0.497699 6_3:-19300851 Msa0943490:CDS
AGTTAATGGTGGGTGCAGTC+AGG 0.500033 6_3:-19297293 Msa0943490:three_prime_UTR
GGCACTTCCTCCACCACCAC+CGG 0.500036 6_3:+19300821 None:intergenic
GGAAGTGCCGGTGGAAGTGC+CGG 0.505000 6_3:-19300807 Msa0943490:CDS
TGCAACAATTCGATTCAAGC+AGG 0.505093 6_3:-19300910 Msa0943490:CDS
AATTACCGGTGGCGGGCCGG+TGG 0.505384 6_3:-19300837 Msa0943490:CDS
TGTGTTCTGAGAAAGGAAAA+GGG 0.505874 6_3:+19301173 None:intergenic
TTGCAATTTGCCTCACTAAG+TGG 0.506033 6_3:-19297440 Msa0943490:three_prime_UTR
AGTGGTTATTATGGTAGAAG+TGG 0.508960 6_3:-19300723 Msa0943490:CDS
CACCACCACCGGCCCGCCAC+CGG 0.520233 6_3:+19300832 None:intergenic
ACTGTTGCATGACAATCATA+TGG 0.522342 6_3:+19297016 None:intergenic
TGGATCATTACAAGGTTCTA+GGG 0.527018 6_3:-19301040 Msa0943490:CDS
CGTCCGAACACGATCAAGAT+CGG 0.529128 6_3:+19297166 None:intergenic
GGTTTCGTTGCAGTCAAAAG+TGG 0.534299 6_3:+19297110 None:intergenic
GTGGTTATTATGGTAGAAGT+GGG 0.540243 6_3:-19300722 Msa0943490:CDS
CAAATTTAGGTGGTTTGATG+AGG 0.540406 6_3:-19297081 Msa0943490:three_prime_UTR
GTGGTTTGATGAGGATCTGA+TGG 0.541368 6_3:-19297072 Msa0943490:three_prime_UTR
TACAAGTATACTTTCTACAT+TGG 0.542772 6_3:+19296937 None:intergenic
ATAGTTACCGGCACTTCCAC+CGG 0.548015 6_3:+19300800 None:intergenic
TACAATTGCACAAGTAACTA+GGG 0.549039 6_3:+19297404 None:intergenic
GGTGGTGGAGGAAGTGCCGG+TGG 0.554468 6_3:-19300816 Msa0943490:CDS
GGATTAAAAGCAGTTAATGG+TGG 0.554587 6_3:-19297304 Msa0943490:three_prime_UTR
TGAAGCGTATGAGGTTCTCA+TGG 0.556176 6_3:-19300883 Msa0943490:CDS
TCACGCTGTCGTAGATTTAG+GGG 0.558667 6_3:-19297330 Msa0943490:three_prime_UTR
CAGAGCTATATTAGGTGCGA+TGG 0.564743 6_3:-19298176 Msa0943490:CDS
TTAGCATGTATTCCATATAC+GGG 0.567478 6_3:-19297371 Msa0943490:three_prime_UTR
ATGGTTGTTGTTGATTCAAG+TGG 0.568671 6_3:-19298157 Msa0943490:CDS
TATGGTAGAAGTGGGTCTGG+TGG 0.569165 6_3:-19300714 Msa0943490:CDS
GGATATGGTAGAAGTGGGAG+TGG 0.570275 6_3:-19300753 Msa0943490:CDS
GAGAGCAGATAACTGAATCA+AGG 0.571592 6_3:+19297605 None:intergenic
ATTGCACAAGTAACTAGGGA+AGG 0.574247 6_3:+19297408 None:intergenic
GATTAAAAGCAGTTAATGGT+GGG 0.574986 6_3:-19297303 Msa0943490:three_prime_UTR
GTTTCGTTGCAGTCAAAAGT+GGG 0.577550 6_3:+19297111 None:intergenic
GTTATGGATATGGTAGAAGT+GGG 0.577613 6_3:-19300758 Msa0943490:CDS
ATGAGGTTCTCATGGATGAT+CGG 0.580960 6_3:-19300875 Msa0943490:CDS
TAGAACCTTGTAATGATCCA+TGG 0.586987 6_3:+19301043 None:intergenic
TTCTTGATCAGATGGTTCAG+AGG 0.589867 6_3:+19297259 None:intergenic
AACCCAATCCCAAATTTAGG+TGG 0.593664 6_3:-19297091 Msa0943490:three_prime_UTR
ACCATCTGATCAAGAACGAA+TGG 0.594416 6_3:-19297252 Msa0943490:three_prime_UTR
GGAAGAGAGACCACTTAGTG+AGG 0.603834 6_3:+19297430 None:intergenic
ACACACCATGGATCATTACA+AGG 0.608867 6_3:-19301048 Msa0943490:exon
ATGGAAGATGCAAAATTCTG+GGG 0.612791 6_3:-19298125 Msa0943490:intron
CATTCGAGTGGCAAGTGAAG+CGG 0.614106 6_3:+19297583 None:intergenic
GGGTGTAGTCATCATGCAGT+CGG 0.626825 6_3:+19297131 None:intergenic
CGATCTTGATCGTGTTCGGA+CGG 0.628210 6_3:-19297165 Msa0943490:three_prime_UTR
TGATTGTCATGCAACAGTCG+AGG 0.633986 6_3:-19297011 Msa0943490:three_prime_UTR
GCAAATTGCAAGAGACAACA+AGG 0.635009 6_3:+19297452 None:intergenic
TCAGCAGTACAAGTACAAGT+AGG 0.639153 6_3:+19296869 None:intergenic
GGATATAGTATTCATATGTG+CGG 0.645647 6_3:-19297499 Msa0943490:three_prime_UTR
GCGCTGAGTTTAATTACCGG+TGG 0.645650 6_3:-19300848 Msa0943490:CDS
TTGCACAAGTAACTAGGGAA+GGG 0.651100 6_3:+19297409 None:intergenic
GATATGGTAGAAGTGGGAGT+GGG 0.662980 6_3:-19300752 Msa0943490:CDS
AACGTGAAGAAGCATTCGAG+TGG 0.683317 6_3:+19297571 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATATTTCATTAGTAT+GGG + chr6_3:19299208-19299227 None:intergenic 10.0%
!! TATAAAATATTTCATTAGTA+TGG + chr6_3:19299209-19299228 None:intergenic 10.0%
!!! TTTTTTATTTAATATTACTG+AGG - chr6_3:19300823-19300842 Msa0943490:CDS 10.0%
!!! ATAAATTTGGTGTTTTTATT+CGG - chr6_3:19297360-19297379 Msa0943490:three_prime_UTR 15.0%
!!! TTTTCTTTTAAATCAGATTT+GGG - chr6_3:19298585-19298604 Msa0943490:intron 15.0%
!! AATTATTCATAAGTTAGTCA+AGG - chr6_3:19297602-19297621 Msa0943490:three_prime_UTR 20.0%
!! AAAAATAAGTCAATTCAAAC+AGG - chr6_3:19297732-19297751 Msa0943490:intron 20.0%
!!! TTAAGTTTTATAAGACTGTT+TGG + chr6_3:19297983-19298002 None:intergenic 20.0%
!!! AATAATGTATGCTATCTTTT+TGG - chr6_3:19298413-19298432 Msa0943490:intron 20.0%
!!! GTTTTCTTTTAAATCAGATT+TGG - chr6_3:19298584-19298603 Msa0943490:intron 20.0%
!! ATAGTTTCTAATGATGAAAA+TGG - chr6_3:19298712-19298731 Msa0943490:intron 20.0%
!! AATATAATTCAAACTAAAGC+TGG + chr6_3:19298778-19298797 None:intergenic 20.0%
!! TTGACTAATTAATGTGTATT+AGG - chr6_3:19298796-19298815 Msa0943490:intron 20.0%
!! AACCAAATTTAAATGAGAAA+AGG - chr6_3:19299466-19299485 Msa0943490:intron 20.0%
!!! AACCTTTTCTCATTTAAATT+TGG + chr6_3:19299471-19299490 None:intergenic 20.0%
!!! ACATATTTTTGTTGAAGAAA+AGG - chr6_3:19299653-19299672 Msa0943490:intron 20.0%
!! ATTTGAGCATCAATAATTTA+AGG + chr6_3:19299744-19299763 None:intergenic 20.0%
!! GTTTAAGAAATAGTGAATAA+TGG - chr6_3:19300477-19300496 Msa0943490:intron 20.0%
! AAAAGGGAAAGAAAATTTCA+TGG + chr6_3:19296842-19296861 None:intergenic 25.0%
!! GTTTTTGTATGAATTGGAAT+TGG + chr6_3:19296962-19296981 None:intergenic 25.0%
!! AATTGTTGCATTTTCTCTAA+CGG + chr6_3:19297108-19297127 None:intergenic 25.0%
! AGACTGATAATAATAGTTAC+CGG + chr6_3:19297243-19297262 None:intergenic 25.0%
!!! TGTTTTTATTCGGATTTTGA+CGG - chr6_3:19297370-19297389 Msa0943490:three_prime_UTR 25.0%
! TCGTTATGAAAAAACAACTT+AGG - chr6_3:19297625-19297644 Msa0943490:CDS 25.0%
!!! TAAGTTTTATGAGACTGTTT+GGG + chr6_3:19297832-19297851 None:intergenic 25.0%
!! AGTCTTATAAAACTTAAGTC+AGG - chr6_3:19297986-19298005 Msa0943490:intron 25.0%
!!! GTCTGTTTTGAATGTTATAT+AGG + chr6_3:19298061-19298080 None:intergenic 25.0%
! GTTCTTTAGATAAGAGAAAA+AGG - chr6_3:19298105-19298124 Msa0943490:intron 25.0%
!! TATGCTATCTTTTTGGATTT+GGG - chr6_3:19298420-19298439 Msa0943490:intron 25.0%
!! CTATCATTTTATTCAGGAAA+TGG + chr6_3:19298476-19298495 None:intergenic 25.0%
! CATTTCCTGAATAAAATGAT+AGG - chr6_3:19298474-19298493 Msa0943490:intron 25.0%
!! TGTTTCCTATCATTTTATTC+AGG + chr6_3:19298482-19298501 None:intergenic 25.0%
! AATCACTATAGTTAGCAAAT+CGG + chr6_3:19298650-19298669 None:intergenic 25.0%
!! TTTGACTTCATATATGATCT+CGG - chr6_3:19299026-19299045 Msa0943490:intron 25.0%
! GTGTAAGTTACTATATTCAA+TGG - chr6_3:19299160-19299179 Msa0943490:intron 25.0%
! TCTCAAAATTGATATGGATA+CGG + chr6_3:19300015-19300034 None:intergenic 25.0%
! ATCAACTCTCAAAATTGATA+TGG + chr6_3:19300021-19300040 None:intergenic 25.0%
!!! TTTTGAGAGTTGATATTAGT+TGG - chr6_3:19300027-19300046 Msa0943490:intron 25.0%
! ATTGGATTAAAAGCAGTTAA+TGG - chr6_3:19300721-19300740 Msa0943490:CDS 25.0%
! TACAAGTATACTTTCTACAT+TGG + chr6_3:19301094-19301113 None:intergenic 25.0%
! AGGGTTTTTGAATTTTCTTG+CGG + chr6_3:19296909-19296928 None:intergenic 30.0%
!!! GGGATGGAATTTTGATTTTA+GGG + chr6_3:19296928-19296947 None:intergenic 30.0%
!!! TGGGATGGAATTTTGATTTT+AGG + chr6_3:19296929-19296948 None:intergenic 30.0%
! TGGAATTGGAATTGGATTTT+GGG + chr6_3:19296948-19296967 None:intergenic 30.0%
! TTGGAATTGGAATTGGATTT+TGG + chr6_3:19296949-19296968 None:intergenic 30.0%
GTATGAATTGGAATTGGAAT+TGG + chr6_3:19296956-19296975 None:intergenic 30.0%
!! TGGTGTGTTTTTGTATGAAT+TGG + chr6_3:19296968-19296987 None:intergenic 30.0%
ATTCATACAAAAACACACCA+TGG - chr6_3:19296968-19296987 Msa0943490:three_prime_UTR 30.0%
TATCAGTCTCAGTATAGTTA+TGG - chr6_3:19297254-19297273 Msa0943490:three_prime_UTR 30.0%
TCTCAGTATAGTTATGGATA+TGG - chr6_3:19297260-19297279 Msa0943490:three_prime_UTR 30.0%
! TGAGTGGAATTTTCGAATTA+CGG - chr6_3:19297459-19297478 Msa0943490:three_prime_UTR 30.0%
! GAATTACGGAGATTTTTGTT+TGG - chr6_3:19297473-19297492 Msa0943490:three_prime_UTR 30.0%
TTCATAAGTTCTCCAAGTTA+GGG + chr6_3:19297759-19297778 None:intergenic 30.0%
TTTCATAAGTTCTCCAAGTT+AGG + chr6_3:19297760-19297779 None:intergenic 30.0%
!! CTAAGTTTTATGAGACTGTT+TGG + chr6_3:19297833-19297852 None:intergenic 30.0%
! AGACTCTAAAGACAAAATTG+TGG - chr6_3:19297892-19297911 Msa0943490:intron 30.0%
! GACTCTAAAGACAAAATTGT+GGG - chr6_3:19297893-19297912 Msa0943490:intron 30.0%
! ACTCTAAAGACAAAATTGTG+GGG - chr6_3:19297894-19297913 Msa0943490:intron 30.0%
AATAAGTGGGAAATAGCTTA+TGG - chr6_3:19297926-19297945 Msa0943490:intron 30.0%
!!! TTTTGTTTTTAGGGCTTGTT+TGG + chr6_3:19298030-19298049 None:intergenic 30.0%
AGCCCTAAAAACAAAATTTG+AGG - chr6_3:19298034-19298053 Msa0943490:intron 30.0%
GCCCTAAAAACAAAATTTGA+GGG - chr6_3:19298035-19298054 Msa0943490:intron 30.0%
!!! GCCCTCAAATTTTGTTTTTA+GGG + chr6_3:19298039-19298058 None:intergenic 30.0%
TTATAAACATTCACTCTCCT+CGG - chr6_3:19298234-19298253 Msa0943490:intron 30.0%
!! TAATTGAAAGGTGTCTCAAT+GGG + chr6_3:19298315-19298334 None:intergenic 30.0%
!! TTAATTGAAAGGTGTCTCAA+TGG + chr6_3:19298316-19298335 None:intergenic 30.0%
ATTGAGACACCTTTCAATTA+AGG - chr6_3:19298315-19298334 Msa0943490:intron 30.0%
!! CAGTTTTGTCCTTAATTGAA+AGG + chr6_3:19298327-19298346 None:intergenic 30.0%
TTCAATTAAGGACAAAACTG+AGG - chr6_3:19298327-19298346 Msa0943490:intron 30.0%
TCAATTAAGGACAAAACTGA+GGG - chr6_3:19298328-19298347 Msa0943490:intron 30.0%
! GTATGCTATCTTTTTGGATT+TGG - chr6_3:19298419-19298438 Msa0943490:intron 30.0%
ACCGTTTAATGAAAACTAGA+CGG + chr6_3:19298626-19298645 None:intergenic 30.0%
TTTCATGACCATAGGAAATT+CGG - chr6_3:19298676-19298695 Msa0943490:intron 30.0%
TGATGAAAATGGAAAACACA+CGG - chr6_3:19298723-19298742 Msa0943490:intron 30.0%
TATTATAGCCTATAAAGTGC+AGG + chr6_3:19298753-19298772 None:intergenic 30.0%
! CATTGTTCCATTTTCAAACA+TGG - chr6_3:19298875-19298894 Msa0943490:intron 30.0%
AGAATCATATCATGCATCTA+TGG - chr6_3:19298909-19298928 Msa0943490:intron 30.0%
! GTTATTATTGTGACTTGTGA+GGG + chr6_3:19299063-19299082 None:intergenic 30.0%
TCAAGAACAAAAATCTAGTC+AGG + chr6_3:19299085-19299104 None:intergenic 30.0%
CTATATAGACATTGACCAAA+GGG + chr6_3:19299141-19299160 None:intergenic 30.0%
ACTATATAGACATTGACCAA+AGG + chr6_3:19299142-19299161 None:intergenic 30.0%
!! CAAACTTCTTTTTCATGTCT+TGG - chr6_3:19299236-19299255 Msa0943490:intron 30.0%
AAGATTTAAAGATCAGTCTC+GGG + chr6_3:19299273-19299292 None:intergenic 30.0%
CAAGATTTAAAGATCAGTCT+CGG + chr6_3:19299274-19299293 None:intergenic 30.0%
AGCAATCTCAGAATGAAATT+GGG + chr6_3:19299313-19299332 None:intergenic 30.0%
AAGCAATCTCAGAATGAAAT+TGG + chr6_3:19299314-19299333 None:intergenic 30.0%
TGCATGAAATATCCACATTA+TGG - chr6_3:19299333-19299352 Msa0943490:intron 30.0%
GCATGAAATATCCACATTAT+GGG - chr6_3:19299334-19299353 Msa0943490:intron 30.0%
ATGCAATATTGAGATACTTC+AGG - chr6_3:19299419-19299438 Msa0943490:intron 30.0%
TTATTGTGAAGATGGAAGAA+TGG + chr6_3:19299543-19299562 None:intergenic 30.0%
ATTACAGGTTATTGTGAAGA+TGG + chr6_3:19299551-19299570 None:intergenic 30.0%
!!! GGTTAGTTTTCATGAATTAC+AGG + chr6_3:19299566-19299585 None:intergenic 30.0%
AAATATGTCACACTAATGCA+AGG + chr6_3:19299641-19299660 None:intergenic 30.0%
! ATATTTTTCCGATAACCTGA+TGG - chr6_3:19299817-19299836 Msa0943490:intron 30.0%
ATTCAAGTGGAGAATCTTTA+TGG - chr6_3:19299884-19299903 Msa0943490:intron 30.0%
TTATGGAAGATGCAAAATTC+TGG - chr6_3:19299901-19299920 Msa0943490:intron 30.0%
TATGGAAGATGCAAAATTCT+GGG - chr6_3:19299902-19299921 Msa0943490:intron 30.0%
AACAAAGGAATCATTATGCT+GGG + chr6_3:19299986-19300005 None:intergenic 30.0%
AAACAAAGGAATCATTATGC+TGG + chr6_3:19299987-19300006 None:intergenic 30.0%
AAGGTAACTGAAATCAATAC+TGG + chr6_3:19300180-19300199 None:intergenic 30.0%
! ATAACATTGCAAAAGTGCAA+AGG + chr6_3:19300319-19300338 None:intergenic 30.0%
! ATACACTTTTGCTTTCTCAA+TGG + chr6_3:19300379-19300398 None:intergenic 30.0%
!! ATAATGGAAGCTTTCAGTTT+TGG - chr6_3:19300493-19300512 Msa0943490:intron 30.0%
! TAATGGAAGCTTTCAGTTTT+GGG - chr6_3:19300494-19300513 Msa0943490:intron 30.0%
GGATATAGTATTCATATGTG+CGG - chr6_3:19300529-19300548 Msa0943490:intron 30.0%
TACAATTGCACAAGTAACTA+GGG + chr6_3:19300627-19300646 None:intergenic 30.0%
TTACAATTGCACAAGTAACT+AGG + chr6_3:19300628-19300647 None:intergenic 30.0%
GTTAGCATGTATTCCATATA+CGG - chr6_3:19300656-19300675 Msa0943490:CDS 30.0%
TTAGCATGTATTCCATATAC+GGG - chr6_3:19300657-19300676 Msa0943490:CDS 30.0%
GATTAAAAGCAGTTAATGGT+GGG - chr6_3:19300725-19300744 Msa0943490:CDS 30.0%
ATATTACTGAGGTTGAAATC+TGG - chr6_3:19300834-19300853 Msa0943490:CDS 30.0%
TCATCAAACCACCTAAATTT+GGG + chr6_3:19300948-19300967 None:intergenic 30.0%
GAAATTAGATTTGTGGAAGT+TGG - chr6_3:19300981-19301000 Msa0943490:CDS 30.0%
!! TGTGTTCTGAGAAAGGAAAA+GGG + chr6_3:19296858-19296877 None:intergenic 35.0%
!! TTGTGTTCTGAGAAAGGAAA+AGG + chr6_3:19296859-19296878 None:intergenic 35.0%
!! GGAAAATTGTGTTCTGAGAA+AGG + chr6_3:19296865-19296884 None:intergenic 35.0%
! TTTCTTGAGGGAATTTTCTC+GGG + chr6_3:19296886-19296905 None:intergenic 35.0%
! GTTTCTTGAGGGAATTTTCT+CGG + chr6_3:19296887-19296906 None:intergenic 35.0%
! ATTTTCTTGCGGTTTCTTGA+GGG + chr6_3:19296898-19296917 None:intergenic 35.0%
! AATTTTCTTGCGGTTTCTTG+AGG + chr6_3:19296899-19296918 None:intergenic 35.0%
!! ATTGGAATTGGATTTTGGGA+TGG + chr6_3:19296944-19296963 None:intergenic 35.0%
TAGAACCTTGTAATGATCCA+TGG + chr6_3:19296988-19297007 None:intergenic 35.0%
ATGGATCATTACAAGGTTCT+AGG - chr6_3:19296987-19297006 Msa0943490:three_prime_UTR 35.0%
TGGATCATTACAAGGTTCTA+GGG - chr6_3:19296988-19297007 Msa0943490:three_prime_UTR 35.0%
GATGATTGAGAATGCTTATC+TGG + chr6_3:19297080-19297099 None:intergenic 35.0%
AGTTATGGATATGGTAGAAG+TGG - chr6_3:19297269-19297288 Msa0943490:three_prime_UTR 35.0%
GTTATGGATATGGTAGAAGT+GGG - chr6_3:19297270-19297289 Msa0943490:three_prime_UTR 35.0%
AGTGGTTATTATGGTAGAAG+TGG - chr6_3:19297305-19297324 Msa0943490:three_prime_UTR 35.0%
GTGGTTATTATGGTAGAAGT+GGG - chr6_3:19297306-19297325 Msa0943490:three_prime_UTR 35.0%
!! TGTCTTGTTGTTTGTTTGAG+TGG - chr6_3:19297443-19297462 Msa0943490:three_prime_UTR 35.0%
TGCAAATAACCTTCCAAACA+AGG + chr6_3:19297544-19297563 None:intergenic 35.0%
TCATAAGTTCTCCAAGTTAG+GGG + chr6_3:19297758-19297777 None:intergenic 35.0%
! CTCTAAAGACAAAATTGTGG+GGG - chr6_3:19297895-19297914 Msa0943490:intron 35.0%
TGGGGGATTATGAAAATAAG+TGG - chr6_3:19297912-19297931 Msa0943490:intron 35.0%
GGGGGATTATGAAAATAAGT+GGG - chr6_3:19297913-19297932 Msa0943490:intron 35.0%
!!! GGCCCTCAAATTTTGTTTTT+AGG + chr6_3:19298040-19298059 None:intergenic 35.0%
! AACAATGCACAGATTTTCTG+AGG + chr6_3:19298088-19298107 None:intergenic 35.0%
ATTAAGGCTAAGGAGCTAAA+GGG + chr6_3:19298158-19298177 None:intergenic 35.0%
AATTAAGGCTAAGGAGCTAA+AGG + chr6_3:19298159-19298178 None:intergenic 35.0%
!! TTTAGCTCCTTAGCCTTAAT+TGG - chr6_3:19298158-19298177 Msa0943490:CDS 35.0%
!! TTAGCTCCTTAGCCTTAATT+GGG - chr6_3:19298159-19298178 Msa0943490:CDS 35.0%
TGCTCACATATGATTTGACT+TGG - chr6_3:19298351-19298370 Msa0943490:intron 35.0%
GATTTGGGAAATCCTAATGT+AGG - chr6_3:19298600-19298619 Msa0943490:intron 35.0%
!!! GCCGTCTAGTTTTCATTAAA+CGG - chr6_3:19298622-19298641 Msa0943490:intron 35.0%
TTCATGACCATAGGAAATTC+GGG - chr6_3:19298677-19298696 Msa0943490:intron 35.0%
! TGTTCCATTTTCAAACATGG+TGG - chr6_3:19298878-19298897 Msa0943490:intron 35.0%
TCATATCATGCATCTATGGT+TGG - chr6_3:19298913-19298932 Msa0943490:intron 35.0%
! GGTTATTATTGTGACTTGTG+AGG + chr6_3:19299064-19299083 None:intergenic 35.0%
TTCTCAGTGTGAAATAAGTC+TGG - chr6_3:19299106-19299125 Msa0943490:intron 35.0%
AGAAACTAGTTCCCATAATG+TGG + chr6_3:19299348-19299367 None:intergenic 35.0%
ATGAGACTCAGTATCATGAT+TGG + chr6_3:19299587-19299606 None:intergenic 35.0%
!! AGTGGTGGGTATGATAAATA+TGG + chr6_3:19299707-19299726 None:intergenic 35.0%
ATATTTATCATACCCACCAC+TGG - chr6_3:19299706-19299725 Msa0943490:intron 35.0%
AGAATCTTCCATCAGGTTAT+CGG + chr6_3:19299828-19299847 None:intergenic 35.0%
TTCTTGTCCAGAGCTATATT+AGG - chr6_3:19299844-19299863 Msa0943490:intron 35.0%
!! ATGGTTGTTGTTGATTCAAG+TGG - chr6_3:19299871-19299890 Msa0943490:intron 35.0%
ATGGAAGATGCAAAATTCTG+GGG - chr6_3:19299903-19299922 Msa0943490:intron 35.0%
!!! AAAATTCTGGGGTAAGCTTT+TGG - chr6_3:19299914-19299933 Msa0943490:intron 35.0%
TGGATACGGAAATGAAACAA+AGG + chr6_3:19300001-19300020 None:intergenic 35.0%
CTGCACATAAAGTTAACGAA+GGG + chr6_3:19300278-19300297 None:intergenic 35.0%
! AATGGAAGCTTTCAGTTTTG+GGG - chr6_3:19300495-19300514 Msa0943490:intron 35.0%
GTATTCCATATACGGGATAT+TGG - chr6_3:19300664-19300683 Msa0943490:CDS 35.0%
AGAATCCAATATCCCGTATA+TGG + chr6_3:19300672-19300691 None:intergenic 35.0%
GGATTAAAAGCAGTTAATGG+TGG - chr6_3:19300724-19300743 Msa0943490:CDS 35.0%
! AACCACCTAAATTTGGGATT+GGG + chr6_3:19300942-19300961 None:intergenic 35.0%
! AAACCACCTAAATTTGGGAT+TGG + chr6_3:19300943-19300962 None:intergenic 35.0%
CTCATCAAACCACCTAAATT+TGG + chr6_3:19300949-19300968 None:intergenic 35.0%
CAAATTTAGGTGGTTTGATG+AGG - chr6_3:19300947-19300966 Msa0943490:CDS 35.0%
GATGGCTGAAATTAGATTTG+TGG - chr6_3:19300974-19300993 Msa0943490:CDS 35.0%
ACTGTTGCATGACAATCATA+TGG + chr6_3:19301015-19301034 None:intergenic 35.0%
ACACACCATGGATCATTACA+AGG - chr6_3:19296980-19296999 Msa0943490:three_prime_UTR 40.0%
TGCAACAATTCGATTCAAGC+AGG - chr6_3:19297118-19297137 Msa0943490:three_prime_UTR 40.0%
ATGAGGTTCTCATGGATGAT+CGG - chr6_3:19297153-19297172 Msa0943490:three_prime_UTR 40.0%
AACGCGCTGAGTTTAATTAC+CGG - chr6_3:19297177-19297196 Msa0943490:three_prime_UTR 40.0%
TATTATGGTAGAAGTGGGTC+TGG - chr6_3:19297311-19297330 Msa0943490:three_prime_UTR 40.0%
AGGTCTTCGCTTCTTAATCT+TGG - chr6_3:19297395-19297414 Msa0943490:three_prime_UTR 40.0%
CTGAATGTCTTCAATTCACC+AGG - chr6_3:19297515-19297534 Msa0943490:three_prime_UTR 40.0%
CTAAGGAGCTAAAGGGATAT+CGG + chr6_3:19298151-19298170 None:intergenic 40.0%
!! TAGCTCCTTAGCCTTAATTG+GGG - chr6_3:19298160-19298179 Msa0943490:CDS 40.0%
TACACGTTGTATGTGAATCG+AGG - chr6_3:19298200-19298219 Msa0943490:intron 40.0%
TGTATGTGAATCGAGGCTAA+AGG - chr6_3:19298207-19298226 Msa0943490:intron 40.0%
TGGACAATTTCTCAGAAACG+TGG - chr6_3:19298371-19298390 Msa0943490:intron 40.0%
GGTAACCATTGATGCTTAGT+TGG - chr6_3:19298441-19298460 Msa0943490:intron 40.0%
TGCAACCAACTAAGCATCAA+TGG + chr6_3:19298449-19298468 None:intergenic 40.0%
AAAACTAGACGGCCTACATT+AGG + chr6_3:19298615-19298634 None:intergenic 40.0%
TTGTGTGCTTTCATGACCAT+AGG - chr6_3:19298668-19298687 Msa0943490:intron 40.0%
TTTCAGACCCGAATTTCCTA+TGG + chr6_3:19298687-19298706 None:intergenic 40.0%
AAGTACACAGACTGCACTTA+TGG + chr6_3:19298840-19298859 None:intergenic 40.0%
! TCCATTTTCAAACATGGTGG+TGG - chr6_3:19298881-19298900 Msa0943490:intron 40.0%
ACCACCACCATGTTTGAAAA+TGG + chr6_3:19298885-19298904 None:intergenic 40.0%
TCAAAGCAAAGACTAGAGAC+TGG + chr6_3:19298956-19298975 None:intergenic 40.0%
! ATTATTGTGACTTGTGAGGG+AGG + chr6_3:19299060-19299079 None:intergenic 40.0%
ATCACATAGATAACCACCAC+TGG - chr6_3:19299497-19299516 Msa0943490:intron 40.0%
AGAATGGTCAACAATCCTTG+TGG + chr6_3:19299527-19299546 None:intergenic 40.0%
! TAGAAGAGCACATTGAACTC+AGG - chr6_3:19299679-19299698 Msa0943490:intron 40.0%
!! AGTTCTTTAAAGCCAGTGGT+GGG + chr6_3:19299721-19299740 None:intergenic 40.0%
!! AAGGAGTTCTTTAAAGCCAG+TGG + chr6_3:19299725-19299744 None:intergenic 40.0%
GTTTCTTGTCATTGATCGCA+TGG - chr6_3:19300133-19300152 Msa0943490:intron 40.0%
CAGTTACCTTGCTAACAGTT+TGG - chr6_3:19300190-19300209 Msa0943490:intron 40.0%
TGAAAGCCAAACTGTTAGCA+AGG + chr6_3:19300199-19300218 None:intergenic 40.0%
CACATAAAGTTAACGAAGGG+AGG + chr6_3:19300275-19300294 None:intergenic 40.0%
GCTGCACATAAAGTTAACGA+AGG + chr6_3:19300279-19300298 None:intergenic 40.0%
TGCTTTCTCAATGGTGTTCA+TGG + chr6_3:19300370-19300389 None:intergenic 40.0%
GAGAGCAGATAACTGAATCA+AGG + chr6_3:19300426-19300445 None:intergenic 40.0%
!!! AGTTTTGGGGATTGATTGCA+TGG - chr6_3:19300508-19300527 Msa0943490:intron 40.0%
GCAAATTGCAAGAGACAACA+AGG + chr6_3:19300579-19300598 None:intergenic 40.0%
TTGCAATTTGCCTCACTAAG+TGG - chr6_3:19300588-19300607 Msa0943490:intron 40.0%
TTGCACAAGTAACTAGGGAA+GGG + chr6_3:19300622-19300641 None:intergenic 40.0%
ATTGCACAAGTAACTAGGGA+AGG + chr6_3:19300623-19300642 None:intergenic 40.0%
TTCTTGATCAGATGGTTCAG+AGG + chr6_3:19300772-19300791 None:intergenic 40.0%
ACCATCTGATCAAGAACGAA+TGG - chr6_3:19300776-19300795 Msa0943490:CDS 40.0%
ACCATTCGTTCTTGATCAGA+TGG + chr6_3:19300780-19300799 None:intergenic 40.0%
TGATCAAGAACGAATGGTTC+AGG - chr6_3:19300782-19300801 Msa0943490:CDS 40.0%
GTTTCGTTGCAGTCAAAAGT+GGG + chr6_3:19300920-19300939 None:intergenic 40.0%
CGAAACCCAATCCCAAATTT+AGG - chr6_3:19300934-19300953 Msa0943490:CDS 40.0%
AACCCAATCCCAAATTTAGG+TGG - chr6_3:19300937-19300956 Msa0943490:CDS 40.0%
TCAGCAGTACAAGTACAAGT+AGG + chr6_3:19301162-19301181 None:intergenic 40.0%
TGAAGCGTATGAGGTTCTCA+TGG - chr6_3:19297145-19297164 Msa0943490:three_prime_UTR 45.0%
CTGAGTTTAATTACCGGTGG+CGG - chr6_3:19297183-19297202 Msa0943490:three_prime_UTR 45.0%
TGAGTTTAATTACCGGTGGC+GGG - chr6_3:19297184-19297203 Msa0943490:three_prime_UTR 45.0%
GATATGGTAGAAGTGGGAGT+GGG - chr6_3:19297276-19297295 Msa0943490:three_prime_UTR 45.0%
GGGAGTGGAAGTGGTTATTA+TGG - chr6_3:19297296-19297315 Msa0943490:three_prime_UTR 45.0%
! GGTGGTTTGGGGGATAAATT+TGG - chr6_3:19297347-19297366 Msa0943490:three_prime_UTR 45.0%
!! TTATTCGGATTTTGACGGCG+AGG - chr6_3:19297375-19297394 Msa0943490:three_prime_UTR 45.0%
ATTCACCAGGAGACCTTGTT+TGG - chr6_3:19297528-19297547 Msa0943490:three_prime_UTR 45.0%
ATTCAAACAGGCCCCTAACT+TGG - chr6_3:19297744-19297763 Msa0943490:intron 45.0%
AAGGCTTAAAGTCATGCACG+AGG - chr6_3:19298124-19298143 Msa0943490:intron 45.0%
AGGCTTAAAGTCATGCACGA+GGG - chr6_3:19298125-19298144 Msa0943490:intron 45.0%
CAGTACCCCAATTAAGGCTA+AGG + chr6_3:19298168-19298187 None:intergenic 45.0%
TCGAGACAGTACCCCAATTA+AGG + chr6_3:19298174-19298193 None:intergenic 45.0%
TAAACATTCACTCTCCTCGG+TGG - chr6_3:19298237-19298256 Msa0943490:intron 45.0%
AAACATTCACTCTCCTCGGT+GGG - chr6_3:19298238-19298257 Msa0943490:intron 45.0%
!! GGTGGGGTGTCTTTTAACTA+CGG - chr6_3:19298255-19298274 Msa0943490:intron 45.0%
!! CTTTTAACTACGGACGACGT+CGG - chr6_3:19298265-19298284 Msa0943490:intron 45.0%
!! GGACGACGTCGGTTTATAAA+CGG - chr6_3:19298276-19298295 Msa0943490:intron 45.0%
ACGGAACACCTGCACTTTAT+AGG - chr6_3:19298742-19298761 Msa0943490:intron 45.0%
GTCTGGACTGAAAATCCCTT+TGG - chr6_3:19299123-19299142 Msa0943490:intron 45.0%
!! GAGTTCTTTAAAGCCAGTGG+TGG + chr6_3:19299722-19299741 None:intergenic 45.0%
CTGGACAAGAATCTTCCATC+AGG + chr6_3:19299835-19299854 None:intergenic 45.0%
CATCGCACCTAATATAGCTC+TGG + chr6_3:19299854-19299873 None:intergenic 45.0%
CAGAGCTATATTAGGTGCGA+TGG - chr6_3:19299852-19299871 Msa0943490:intron 45.0%
TGCTGGGACATGGTATTTGA+AGG + chr6_3:19299970-19299989 None:intergenic 45.0%
GGAATCATTATGCTGGGACA+TGG + chr6_3:19299980-19299999 None:intergenic 45.0%
!! AACGTGAAGAAGCATTCGAG+TGG + chr6_3:19300460-19300479 None:intergenic 45.0%
AGTCACGCTGTCGTAGATTT+AGG - chr6_3:19300696-19300715 Msa0943490:CDS 45.0%
GTCACGCTGTCGTAGATTTA+GGG - chr6_3:19300697-19300716 Msa0943490:CDS 45.0%
TCACGCTGTCGTAGATTTAG+GGG - chr6_3:19300698-19300717 Msa0943490:CDS 45.0%
CTGTCGTAGATTTAGGGGAT+TGG - chr6_3:19300703-19300722 Msa0943490:CDS 45.0%
AGTCCGATCTTGATCGTGTT+CGG - chr6_3:19300859-19300878 Msa0943490:CDS 45.0%
GGTTTCGTTGCAGTCAAAAG+TGG + chr6_3:19300921-19300940 None:intergenic 45.0%
GTGGTTTGATGAGGATCTGA+TGG - chr6_3:19300956-19300975 Msa0943490:CDS 45.0%
TGATTGTCATGCAACAGTCG+AGG - chr6_3:19301017-19301036 Msa0943490:CDS 45.0%
!! AATAATTATTTATTTGAATA+AGG + chr6_3:19297589-19297608 None:intergenic 5.0%
!! GCAGGTTTCTGAAGCGTATG+AGG - chr6_3:19297136-19297155 Msa0943490:three_prime_UTR 50.0%
GCGCTGAGTTTAATTACCGG+TGG - chr6_3:19297180-19297199 Msa0943490:three_prime_UTR 50.0%
ATAGTTACCGGCACTTCCAC+CGG + chr6_3:19297231-19297250 None:intergenic 50.0%
GGATATGGTAGAAGTGGGAG+TGG - chr6_3:19297275-19297294 Msa0943490:three_prime_UTR 50.0%
TATGGTAGAAGTGGGTCTGG+TGG - chr6_3:19297314-19297333 Msa0943490:three_prime_UTR 50.0%
! ACCAGGAGACCTTGTTTGGA+AGG - chr6_3:19297532-19297551 Msa0943490:three_prime_UTR 50.0%
ACCTTCCAAACAAGGTCTCC+TGG + chr6_3:19297536-19297555 None:intergenic 50.0%
AACATTCACTCTCCTCGGTG+GGG - chr6_3:19298239-19298258 Msa0943490:intron 50.0%
AGTTAAAAGACACCCCACCG+AGG + chr6_3:19298254-19298273 None:intergenic 50.0%
CATTCGAGTGGCAAGTGAAG+CGG + chr6_3:19300448-19300467 None:intergenic 50.0%
GGAAGAGAGACCACTTAGTG+AGG + chr6_3:19300601-19300620 None:intergenic 50.0%
!! AGTTAATGGTGGGTGCAGTC+AGG - chr6_3:19300735-19300754 Msa0943490:CDS 50.0%
CGTCCGAACACGATCAAGAT+CGG + chr6_3:19300865-19300884 None:intergenic 50.0%
CGATCTTGATCGTGTTCGGA+CGG - chr6_3:19300863-19300882 Msa0943490:CDS 50.0%
GGGTGTAGTCATCATGCAGT+CGG + chr6_3:19300900-19300919 None:intergenic 50.0%
!! TTTAATTACCGGTGGCGGGC+CGG - chr6_3:19297188-19297207 Msa0943490:three_prime_UTR 55.0%
! CACGTGCTTTGATGACTGCG+AGG + chr6_3:19298528-19298547 None:intergenic 55.0%
! TGTGACTTGTGAGGGAGGTG+AGG + chr6_3:19299055-19299074 None:intergenic 55.0%
CAATCCTTGTGGCTGACCAG+TGG + chr6_3:19299516-19299535 None:intergenic 55.0%
GGTAGAAGTGGGAGTGGGAG+TGG - chr6_3:19297281-19297300 Msa0943490:three_prime_UTR 60.0%
AGTGGGAGTGGGAGTGGAAG+TGG - chr6_3:19297287-19297306 Msa0943490:three_prime_UTR 60.0%
GGTAGAAGTGGGTCTGGTGG+TGG - chr6_3:19297317-19297336 Msa0943490:three_prime_UTR 60.0%
!! AGAAGTGGGTCTGGTGGTGG+TGG - chr6_3:19297320-19297339 Msa0943490:three_prime_UTR 60.0%
!! TGGTGGTGGTGGTGGTGGTT+TGG - chr6_3:19297334-19297353 Msa0943490:three_prime_UTR 60.0%
!! GGTGGTGGTGGTGGTGGTTT+GGG - chr6_3:19297335-19297354 Msa0943490:three_prime_UTR 60.0%
!! GTGGTGGTGGTGGTGGTTTG+GGG - chr6_3:19297336-19297355 Msa0943490:three_prime_UTR 60.0%
!! TGGTGGTGGTGGTGGTTTGG+GGG - chr6_3:19297337-19297356 Msa0943490:three_prime_UTR 60.0%
ACCACCACTGGTCAGCCACA+AGG - chr6_3:19299509-19299528 Msa0943490:intron 60.0%
TCCTTGTGGCTGACCAGTGG+TGG + chr6_3:19299513-19299532 None:intergenic 60.0%
GGCACTTCCTCCACCACCAC+CGG + chr6_3:19297210-19297229 None:intergenic 65.0%
!! GGTGGTGGTGGAGGAAGTGC+CGG - chr6_3:19297209-19297228 Msa0943490:three_prime_UTR 65.0%
!! GGAAGTGCCGGTGGAAGTGC+CGG - chr6_3:19297221-19297240 Msa0943490:three_prime_UTR 65.0%
!! AGTGGGTCTGGTGGTGGTGG+TGG - chr6_3:19297323-19297342 Msa0943490:three_prime_UTR 65.0%
!! TCTGGTGGTGGTGGTGGTGG+TGG - chr6_3:19297329-19297348 Msa0943490:three_prime_UTR 65.0%
!! AATTACCGGTGGCGGGCCGG+TGG - chr6_3:19297191-19297210 Msa0943490:three_prime_UTR 70.0%
!! GGTGGTGGAGGAAGTGCCGG+TGG - chr6_3:19297212-19297231 Msa0943490:three_prime_UTR 70.0%
!! GGGTCTGGTGGTGGTGGTGG+TGG - chr6_3:19297326-19297345 Msa0943490:three_prime_UTR 70.0%
!!! TACCGGTGGCGGGCCGGTGG+TGG - chr6_3:19297194-19297213 Msa0943490:three_prime_UTR 80.0%
! CACCACCACCGGCCCGCCAC+CGG + chr6_3:19297199-19297218 None:intergenic 80.0%
!!! TGGCGGGCCGGTGGTGGTGG+AGG - chr6_3:19297200-19297219 Msa0943490:three_prime_UTR 80.0%
!!! CGGTGGCGGGCCGGTGGTGG+TGG - chr6_3:19297197-19297216 Msa0943490:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 19296837 19301213 19296837 ID=Msa0943490;Name=Msa0943490
chr6_3 mRNA 19296837 19301213 19296837 ID=Msa0943490-mRNA-1;Parent=Msa0943490;Name=Msa0943490-mRNA-1;_AED=0.14;_eAED=0.14;_QI=150|1|1|1|0.5|0.66|3|785|195
chr6_3 exon 19296837 19297699 19296837 ID=Msa0943490-mRNA-1:exon:5761;Parent=Msa0943490-mRNA-1
chr6_3 exon 19298126 19298195 19298126 ID=Msa0943490-mRNA-1:exon:5760;Parent=Msa0943490-mRNA-1
chr6_3 exon 19300624 19301213 19300624 ID=Msa0943490-mRNA-1:exon:5759;Parent=Msa0943490-mRNA-1
chr6_3 five_prime_UTR 19301064 19301213 19301064 ID=Msa0943490-mRNA-1:five_prime_utr;Parent=Msa0943490-mRNA-1
chr6_3 CDS 19300624 19301063 19300624 ID=Msa0943490-mRNA-1:cds;Parent=Msa0943490-mRNA-1
chr6_3 CDS 19298126 19298195 19298126 ID=Msa0943490-mRNA-1:cds;Parent=Msa0943490-mRNA-1
chr6_3 CDS 19297622 19297699 19297622 ID=Msa0943490-mRNA-1:cds;Parent=Msa0943490-mRNA-1
chr6_3 three_prime_UTR 19296837 19297621 19296837 ID=Msa0943490-mRNA-1:three_prime_utr;Parent=Msa0943490-mRNA-1
Gene Sequence

>Msa0943490

ATGGATCATTACAAGGTTCTAGGGTTACACAAAACAGCATCAAAAGAAGAAATCAAAATCGCATTCAAGAAACTCGCGTTTCAATTTCATCCAGATAAGCATTCTCAATCATCTAAATCCGTTAGAGAAAATGCAACAATTCGATTCAAGCAGGTTTCTGAAGCGTATGAGGTTCTCATGGATGATCGGAAACGCGCTGAGTTTAATTACCGGTGGCGGGCCGGTGGTGGTGGAGGAAGTGCCGGTGGAAGTGCCGGTAACTATTATTATCAGTCTCAGTATAGTTATGGATATGGTAGAAGTGGGAGTGGGAGTGGAAGTGGTTATTATGGTAGAAGTGGGTCTGGTGGTGGTGGTGGTGGTGGTTTGGGGGATAAATTTGGTGTTTTTATTCGGATTTTGACGGCGAGGTCTTCGCTTCTTAATCTTGGATTCGCAGCAGCTATATTAGGTGCGATGGTTGTTGTTGATTCAAGTGGAGAATCTTTATGGAAGATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAACACCATTGAGAAAGCAAAAGTGTATAAAAAAGATAACACGAATGAACATCCTTGA
Protein sequence

>Msa0943490

MDHYKVLGLHKTASKEEIKIAFKKLAFQFHPDKHSQSSKSVRENATIRFKQVSEAYEVLMDDRKRAEFNYRWRAGGGGGSAGGSAGNYYYQSQYSYGYGRSGSGSGSGYYGRSGSGGGGGGGLGDKFGVFIRILTARSSLLNLGFAAAILGAMVVVDSSGESLWKMQNSGKSFEEAMNTIEKAKVYKKDNTNEHP*