Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948560 | XP_013451804.1 | 97.403 | 231 | 6 | 0 | 1 | 231 | 1 | 231 | 5.86e-160 | 455 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948560 | sp|Q9MA75|VIP1_ARATH | 46.691 | 272 | 94 | 9 | 8 | 231 | 6 | 274 | 2.17e-56 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0948560 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0948560 | Msa0985350 | 0.880941 | 3.624091e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948560 | MtrunA17_Chr6g0463571 | 97.403 | 231 | 6 | 0 | 1 | 231 | 1 | 231 | 5.39e-164 | 455 |
| Msa0948560 | MtrunA17_Chr5g0432701 | 53.521 | 213 | 70 | 7 | 26 | 231 | 49 | 239 | 1.06e-54 | 179 |
| Msa0948560 | MtrunA17_Chr3g0107491 | 45.148 | 237 | 84 | 9 | 26 | 231 | 36 | 257 | 3.94e-46 | 157 |
| Msa0948560 | MtrunA17_Chr4g0036071 | 56.442 | 163 | 63 | 3 | 76 | 231 | 279 | 440 | 1.79e-44 | 155 |
| Msa0948560 | MtrunA17_Chr3g0128781 | 48.058 | 206 | 81 | 6 | 28 | 231 | 7 | 188 | 4.26e-44 | 150 |
| Msa0948560 | MtrunA17_Chr2g0329551 | 62.222 | 135 | 40 | 3 | 107 | 231 | 168 | 301 | 2.08e-42 | 149 |
| Msa0948560 | MtrunA17_Chr1g0156051 | 50.296 | 169 | 69 | 5 | 74 | 231 | 303 | 467 | 7.05e-29 | 114 |
| Msa0948560 | MtrunA17_Chr1g0202051 | 34.483 | 203 | 117 | 5 | 31 | 228 | 11 | 202 | 2.08e-17 | 79.3 |
| Msa0948560 | MtrunA17_Chr2g0316551 | 50.667 | 75 | 37 | 0 | 149 | 223 | 206 | 280 | 1.75e-15 | 74.7 |
| Msa0948560 | MtrunA17_Chr2g0325131 | 50.667 | 75 | 37 | 0 | 149 | 223 | 189 | 263 | 6.82e-14 | 70.1 |
| Msa0948560 | MtrunA17_Chr2g0306581 | 65.306 | 49 | 17 | 0 | 139 | 187 | 1 | 49 | 1.15e-13 | 65.9 |
| Msa0948560 | MtrunA17_Chr4g0040891 | 48.000 | 75 | 39 | 0 | 149 | 223 | 192 | 266 | 2.23e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948560 | AT1G43700.1 | 46.691 | 272 | 94 | 9 | 8 | 231 | 6 | 274 | 2.21e-57 | 186 |
| Msa0948560 | AT2G40620.1 | 44.958 | 238 | 106 | 8 | 2 | 231 | 8 | 228 | 2.56e-44 | 152 |
| Msa0948560 | AT4G38900.2 | 54.190 | 179 | 59 | 5 | 73 | 231 | 299 | 474 | 5.78e-44 | 155 |
| Msa0948560 | AT4G38900.3 | 54.190 | 179 | 59 | 5 | 73 | 231 | 299 | 474 | 5.78e-44 | 155 |
| Msa0948560 | AT2G31370.5 | 66.154 | 130 | 34 | 3 | 109 | 229 | 151 | 279 | 9.94e-44 | 151 |
| Msa0948560 | AT2G31370.2 | 66.154 | 130 | 34 | 3 | 109 | 229 | 151 | 279 | 2.88e-43 | 150 |
| Msa0948560 | AT2G31370.4 | 66.154 | 130 | 34 | 3 | 109 | 229 | 151 | 279 | 2.88e-43 | 150 |
| Msa0948560 | AT2G31370.1 | 66.154 | 130 | 34 | 3 | 109 | 229 | 151 | 279 | 2.88e-43 | 150 |
| Msa0948560 | AT2G31370.7 | 66.154 | 130 | 34 | 3 | 109 | 229 | 151 | 279 | 2.88e-43 | 150 |
| Msa0948560 | AT2G31370.3 | 66.154 | 130 | 34 | 3 | 109 | 229 | 151 | 279 | 2.88e-43 | 150 |
| Msa0948560 | AT2G31370.6 | 66.154 | 130 | 34 | 3 | 109 | 229 | 151 | 279 | 2.88e-43 | 150 |
| Msa0948560 | AT2G21230.2 | 55.030 | 169 | 60 | 3 | 76 | 232 | 287 | 451 | 8.51e-43 | 150 |
| Msa0948560 | AT2G21230.3 | 55.030 | 169 | 60 | 3 | 76 | 232 | 287 | 451 | 2.53e-42 | 150 |
| Msa0948560 | AT4G38900.1 | 52.432 | 185 | 59 | 6 | 73 | 231 | 299 | 480 | 1.60e-41 | 149 |
| Msa0948560 | AT1G06070.1 | 61.364 | 132 | 42 | 2 | 109 | 231 | 159 | 290 | 1.19e-40 | 144 |
| Msa0948560 | AT2G21230.4 | 54.167 | 168 | 61 | 3 | 76 | 231 | 287 | 450 | 2.12e-40 | 145 |
| Msa0948560 | AT2G21230.1 | 54.167 | 168 | 61 | 3 | 76 | 231 | 287 | 450 | 2.12e-40 | 145 |
| Msa0948560 | AT1G06850.1 | 66.972 | 109 | 35 | 1 | 123 | 231 | 121 | 228 | 1.33e-39 | 139 |
| Msa0948560 | AT1G06850.2 | 72.152 | 79 | 21 | 1 | 123 | 201 | 121 | 198 | 1.34e-28 | 108 |
| Msa0948560 | AT2G13150.1 | 32.515 | 163 | 94 | 4 | 83 | 238 | 83 | 236 | 6.15e-16 | 75.1 |
| Msa0948560 | AT3G58120.2 | 45.349 | 86 | 47 | 0 | 149 | 234 | 200 | 285 | 6.38e-16 | 75.5 |
| Msa0948560 | AT2G42380.5 | 45.783 | 83 | 45 | 0 | 149 | 231 | 184 | 266 | 1.17e-15 | 74.7 |
| Msa0948560 | AT2G12940.1 | 32.000 | 150 | 94 | 4 | 83 | 229 | 82 | 226 | 4.15e-14 | 70.5 |
| Msa0948560 | AT2G42380.2 | 49.333 | 75 | 38 | 0 | 149 | 223 | 184 | 258 | 4.82e-14 | 70.5 |
| Msa0948560 | AT3G58120.1 | 49.333 | 75 | 38 | 0 | 149 | 223 | 200 | 274 | 1.04e-13 | 69.7 |
| Msa0948560 | AT2G12900.1 | 37.079 | 89 | 55 | 1 | 143 | 231 | 109 | 196 | 3.36e-13 | 67.8 |
| Msa0948560 | AT2G42380.3 | 64.444 | 45 | 16 | 0 | 149 | 193 | 184 | 228 | 1.16e-11 | 62.8 |
| Msa0948560 | AT2G42380.4 | 64.444 | 45 | 16 | 0 | 149 | 193 | 184 | 228 | 1.16e-11 | 62.8 |
Find 70 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACAGGATTCTTGCTAAT+AGG | 0.313599 | 6_3:-33051189 | Msa0948560:intron |
| TTGATCCTAAGAGAGCTAAA+AGG | 0.339939 | 6_3:-33052720 | Msa0948560:intron |
| TGATTTGACTGCTCAGAATA+AGG | 0.343859 | 6_3:-33048761 | Msa0948560:CDS |
| GTTTCTAAGTCAATTATAAC+TGG | 0.351222 | 6_3:+33053135 | None:intergenic |
| GGGTTAGGGTTTGGTGGTGA+AGG | 0.352329 | 6_3:-33052880 | Msa0948560:CDS |
| TTTGATGGGTTAGGGTTTGG+TGG | 0.386396 | 6_3:-33052886 | Msa0948560:CDS |
| GGTTAGGGTTTGGTGGTGAA+GGG | 0.395694 | 6_3:-33052879 | Msa0948560:CDS |
| TGCACAACTTACAGTCCTTC+AGG | 0.397567 | 6_3:-33051071 | Msa0948560:intron |
| CTGAGTGAGAACGGCGGTGG+TGG | 0.401141 | 6_3:+33053091 | None:intergenic |
| ACAGCGTCAGGGGACGGGAG+AGG | 0.412739 | 6_3:+33052991 | None:intergenic |
| TTGGAACTTGGAAGTGGTGG+TGG | 0.413409 | 6_3:+33053248 | None:intergenic |
| GAACTTGGAAGTGGTGGTGG+TGG | 0.419234 | 6_3:+33053251 | None:intergenic |
| GTTAGGGTTTGGTGGTGAAG+GGG | 0.427763 | 6_3:-33052878 | Msa0948560:CDS |
| CAGCGTCAGGGGACGGGAGA+GGG | 0.430362 | 6_3:+33052992 | None:intergenic |
| GAGATGGGGTTGTTTGAAGT+TGG | 0.453490 | 6_3:-33052796 | Msa0948560:CDS |
| AGGGGACGGGAGAGGGAGGT+TGG | 0.458623 | 6_3:+33052999 | None:intergenic |
| TTTGTGTTTGTGTTGGAACT+TGG | 0.461107 | 6_3:+33053236 | None:intergenic |
| TTATGAGTTTGTGTTTGTGT+TGG | 0.462086 | 6_3:+33053229 | None:intergenic |
| TCGATGGATGGGTCTGAGAT+GGG | 0.474377 | 6_3:-33052811 | Msa0948560:CDS |
| TTCGATGGATGGGTCTGAGA+TGG | 0.478441 | 6_3:-33052812 | Msa0948560:CDS |
| ATCGGGACAGCGTCAGGGGA+CGG | 0.485265 | 6_3:+33052985 | None:intergenic |
| GGTCCCACGTGATGGTGGCA+TGG | 0.493635 | 6_3:+33053113 | None:intergenic |
| AAGTCAATTATAACTGGTGG+TGG | 0.495733 | 6_3:+33053141 | None:intergenic |
| GTCCCCTGACGCTGTCCCGA+TGG | 0.496675 | 6_3:-33052983 | Msa0948560:CDS |
| AGAGGAAGGTGAGTAGACAT+AGG | 0.498750 | 6_3:-33052843 | Msa0948560:CDS |
| GGAGAAAGTTGAAGAGAGGA+AGG | 0.499134 | 6_3:-33052857 | Msa0948560:CDS |
| ATCGAAGTCGGACGGGTCGA+AGG | 0.500424 | 6_3:+33053026 | None:intergenic |
| CGTCGAAGTTTGCTGCGAAA+CGG | 0.501035 | 6_3:+33053058 | None:intergenic |
| GTGTTGGAACTTGGAAGTGG+TGG | 0.505022 | 6_3:+33053245 | None:intergenic |
| AGTGGTGGTGGTGGTTGAAG+TGG | 0.505855 | 6_3:+33053260 | None:intergenic |
| CGGTGGTGGGTCCCACGTGA+TGG | 0.512907 | 6_3:+33053105 | None:intergenic |
| AACTCGATATACAAGTGAGC+TGG | 0.519563 | 6_3:-33051137 | Msa0948560:CDS |
| GGGTTGTTTGAAGTTGGTGA+TGG | 0.524705 | 6_3:-33052790 | Msa0948560:CDS |
| TGGACTCATCAGAGTCCATC+GGG | 0.530528 | 6_3:+33052968 | None:intergenic |
| CATCGGGAAGTCAGCGTCAG+AGG | 0.531841 | 6_3:-33052947 | Msa0948560:CDS |
| TGAGTGAGAACGGCGGTGGT+GGG | 0.539319 | 6_3:+33053092 | None:intergenic |
| AAGGGGAGAAAGTTGAAGAG+AGG | 0.540706 | 6_3:-33052861 | Msa0948560:CDS |
| AGTTCAGCAAGTTTCTCAGC+CGG | 0.541555 | 6_3:+33052751 | None:intergenic |
| TTTGTGTTGGAACTTGGAAG+TGG | 0.541724 | 6_3:+33053242 | None:intergenic |
| TGGACTCTGATGAGTCCATC+GGG | 0.544487 | 6_3:-33052963 | Msa0948560:CDS |
| TGGTGGGTCCCACGTGATGG+TGG | 0.546686 | 6_3:+33053108 | None:intergenic |
| TGGAGATATCGAAGTCGGAC+GGG | 0.546734 | 6_3:+33053019 | None:intergenic |
| CGTCAGGGGACGGGAGAGGG+AGG | 0.547402 | 6_3:+33052995 | None:intergenic |
| AAGCTTTGCTTGTTGCTCGA+AGG | 0.549248 | 6_3:+33048717 | None:intergenic |
| AGGTATAGTAGTTCGATGGA+TGG | 0.550518 | 6_3:-33052823 | Msa0948560:CDS |
| AGTCCATCGGGACAGCGTCA+GGG | 0.559909 | 6_3:+33052980 | None:intergenic |
| GGAAGTCAGCGTCAGAGGGA+CGG | 0.567008 | 6_3:-33052942 | Msa0948560:CDS |
| GGTATAGTAGTTCGATGGAT+GGG | 0.582990 | 6_3:-33052822 | Msa0948560:CDS |
| AGTCGGACGGGTCGAAGGTG+AGG | 0.583026 | 6_3:+33053031 | None:intergenic |
| ATGGACTCTGATGAGTCCAT+CGG | 0.585619 | 6_3:-33052964 | Msa0948560:CDS |
| GCATCTCAGGAGTTTGTCTG+TGG | 0.588489 | 6_3:-33052920 | Msa0948560:CDS |
| ATGGACTCATCAGAGTCCAT+CGG | 0.588783 | 6_3:+33052967 | None:intergenic |
| TCTAAGTCAATTATAACTGG+TGG | 0.588904 | 6_3:+33053138 | None:intergenic |
| CTGCTGCACGATCGAAAGAG+AGG | 0.598234 | 6_3:-33051162 | Msa0948560:CDS |
| GATATACAAGTGAGCTGGAG+AGG | 0.598508 | 6_3:-33051132 | Msa0948560:CDS |
| AGGTGGTGTCTGAGTGAGAA+CGG | 0.599071 | 6_3:+33053082 | None:intergenic |
| ACATAGGTATAGTAGTTCGA+TGG | 0.599361 | 6_3:-33052827 | Msa0948560:CDS |
| CGATGGATGGGTCTGAGATG+GGG | 0.601831 | 6_3:-33052810 | Msa0948560:CDS |
| CAACAAGCAAAGCTTAGAGA+AGG | 0.603588 | 6_3:-33048709 | Msa0948560:CDS |
| TTGGAGATATCGAAGTCGGA+CGG | 0.611978 | 6_3:+33053018 | None:intergenic |
| GAAGTTTGCTGCGAAACGGA+AGG | 0.630495 | 6_3:+33053062 | None:intergenic |
| GAGGTTGGAGATATCGAAGT+CGG | 0.632312 | 6_3:+33053014 | None:intergenic |
| GAAACCATGCCACCATCACG+TGG | 0.635172 | 6_3:-33053117 | Msa0948560:CDS |
| TGGTGTGAAGAAATCTATGC+CGG | 0.640871 | 6_3:-33052770 | Msa0948560:CDS |
| TGTCTGAGTGAGAACGGCGG+TGG | 0.649339 | 6_3:+33053088 | None:intergenic |
| GTTTGCTGCGAAACGGAAGG+TGG | 0.671587 | 6_3:+33053065 | None:intergenic |
| ATTCTGAGCAGTCAAATCAG+TGG | 0.697438 | 6_3:+33048765 | None:intergenic |
| GGACTGTAAGTTGTGCAGAG+AGG | 0.716589 | 6_3:+33051077 | None:intergenic |
| AAACCATGCCACCATCACGT+GGG | 0.740666 | 6_3:-33053116 | Msa0948560:CDS |
| TGGTGTCTGAGTGAGAACGG+CGG | 0.821224 | 6_3:+33053085 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTAGTTTTTCTTA+TGG | - | chr6_3:33048830-33048849 | Msa0948560:intron | 10.0% |
| !!! | ATACAATTTTTTTTTTTAAG+AGG | + | chr6_3:33049728-33049747 | None:intergenic | 10.0% |
| !! | GTTAAACATATATATAATTT+AGG | + | chr6_3:33050073-33050092 | None:intergenic | 10.0% |
| !!! | TCATTTTGTTAAATTATTAT+TGG | - | chr6_3:33051441-33051460 | Msa0948560:intron | 10.0% |
| !! | TTATTTATCTACTAAATTCA+AGG | - | chr6_3:33049396-33049415 | Msa0948560:intron | 15.0% |
| !!! | ATTTGTGTTTTATTTTGTAA+TGG | - | chr6_3:33050390-33050409 | Msa0948560:intron | 15.0% |
| !!! | TTATTTTGTAATGGATAATT+TGG | - | chr6_3:33050399-33050418 | Msa0948560:intron | 15.0% |
| !! | AAAAAACATCTTAAAACAAA+GGG | + | chr6_3:33050453-33050472 | None:intergenic | 15.0% |
| !!! | CATAAATTTGATTTTATTTC+TGG | + | chr6_3:33052316-33052335 | None:intergenic | 15.0% |
| !!! | ACAAAATTTAGTAATTTTCT+TGG | - | chr6_3:33052681-33052700 | Msa0948560:intron | 15.0% |
| !!! | CACTTTTTATAATCACTTTT+TGG | - | chr6_3:33049349-33049368 | Msa0948560:intron | 20.0% |
| !! | ATGTAAGTTTAATGAATATG+TGG | - | chr6_3:33049493-33049512 | Msa0948560:intron | 20.0% |
| !!! | TAACTTCTTATAGTTTTTAC+AGG | + | chr6_3:33049852-33049871 | None:intergenic | 20.0% |
| !! | GAAAAAACATCTTAAAACAA+AGG | + | chr6_3:33050454-33050473 | None:intergenic | 20.0% |
| !! | GACTAAAATTCTATATATGT+TGG | + | chr6_3:33050581-33050600 | None:intergenic | 20.0% |
| !! | TTGTAACGCAAAATATATAT+AGG | + | chr6_3:33051328-33051347 | None:intergenic | 20.0% |
| !! | ATTTGTATGATAATCGATAA+GGG | + | chr6_3:33051672-33051691 | None:intergenic | 20.0% |
| !! | TATTAAGTGTTCAATGAAAT+AGG | - | chr6_3:33051707-33051726 | Msa0948560:intron | 20.0% |
| !! | ATTAAGTGTTCAATGAAATA+GGG | - | chr6_3:33051708-33051727 | Msa0948560:intron | 20.0% |
| !!! | AAAAAAAAACCTTTTTATCC+TGG | + | chr6_3:33052002-33052021 | None:intergenic | 20.0% |
| !! | AAGATACTGTGATTAATTTA+TGG | + | chr6_3:33052404-33052423 | None:intergenic | 20.0% |
| !!! | ACTTTGAAAAAGACATAAAT+AGG | + | chr6_3:33052531-33052550 | None:intergenic | 20.0% |
| !! | AACAAGATGATAAATAGTTT+AGG | - | chr6_3:33052630-33052649 | Msa0948560:intron | 20.0% |
| !! | TAAATAGTTTAGGCTATTAT+AGG | - | chr6_3:33052640-33052659 | Msa0948560:intron | 20.0% |
| !! | AAATCGTGAATCTAATATTA+TGG | + | chr6_3:33052889-33052908 | None:intergenic | 20.0% |
| !! | ATAATATTAGATTCACGATT+TGG | - | chr6_3:33052888-33052907 | Msa0948560:CDS | 20.0% |
| !! | AAAAATATCTATCTTAAGGA+TGG | + | chr6_3:33052960-33052979 | None:intergenic | 20.0% |
| !! | ACTCAAAAATATCTATCTTA+AGG | + | chr6_3:33052964-33052983 | None:intergenic | 20.0% |
| !! | TAAAAATTTAGATCATAGAG+TGG | + | chr6_3:33053106-33053125 | None:intergenic | 20.0% |
| !! | AAATGTGCAAAAGAATAAAA+AGG | - | chr6_3:33053192-33053211 | Msa0948560:five_prime_UTR | 20.0% |
| ! | GTTTCTAAGTCAATTATAAC+TGG | + | chr6_3:33048885-33048904 | None:intergenic | 25.0% |
| ! | ATATGTGGTATGATATATGA+TGG | - | chr6_3:33049508-33049527 | Msa0948560:intron | 25.0% |
| ! | AAATTGTATGTGTTTATGAC+CGG | - | chr6_3:33049739-33049758 | Msa0948560:intron | 25.0% |
| !! | AGTTAGGAGAGTATATTTAA+TGG | - | chr6_3:33049806-33049825 | Msa0948560:intron | 25.0% |
| ! | TTAACTAACCATCGTAATTA+GGG | + | chr6_3:33050224-33050243 | None:intergenic | 25.0% |
| ! | TTTAACTAACCATCGTAATT+AGG | + | chr6_3:33050225-33050244 | None:intergenic | 25.0% |
| ! | TCCTATAGATATGAAATTTC+TGG | - | chr6_3:33050304-33050323 | Msa0948560:intron | 25.0% |
| ! | ACCAGAAATTTCATATCTAT+AGG | + | chr6_3:33050308-33050327 | None:intergenic | 25.0% |
| ! | TGATAAATTGATTGTGTTTG+TGG | - | chr6_3:33050495-33050514 | Msa0948560:intron | 25.0% |
| !!! | AAAAAAGATAAAAGGGTGTT+TGG | - | chr6_3:33050762-33050781 | Msa0948560:intron | 25.0% |
| ! | TGTTTGGATTATGTAGAATT+TGG | - | chr6_3:33050778-33050797 | Msa0948560:intron | 25.0% |
| ! | AATGTTGTATGTTTGTTTAC+AGG | - | chr6_3:33050813-33050832 | Msa0948560:intron | 25.0% |
| ! | ATCTACATCATTGTTAAAGA+TGG | + | chr6_3:33051073-33051092 | None:intergenic | 25.0% |
| ! | ATGTAATCATGTGTCAATTT+CGG | + | chr6_3:33051412-33051431 | None:intergenic | 25.0% |
| ! | TTTGTATGATAATCGATAAG+GGG | + | chr6_3:33051671-33051690 | None:intergenic | 25.0% |
| ! | GATTTGTATGATAATCGATA+AGG | + | chr6_3:33051673-33051692 | None:intergenic | 25.0% |
| ! | ATGCAATCATAATCAAAATG+AGG | + | chr6_3:33051811-33051830 | None:intergenic | 25.0% |
| !! | TTTTCAAAACGTAGAAAGTA+GGG | + | chr6_3:33051894-33051913 | None:intergenic | 25.0% |
| !!! | ATCTTTTAGTTAGGAAAACA+TGG | + | chr6_3:33052112-33052131 | None:intergenic | 25.0% |
| !! | CCATATCGTATAAGATTTTT+CGG | - | chr6_3:33052202-33052221 | Msa0948560:intron | 25.0% |
| !! | CTTTTTATATGCCAATTTTG+TGG | - | chr6_3:33052421-33052440 | Msa0948560:intron | 25.0% |
| ! | ATTCCATTTAGTTACTTCTA+TGG | - | chr6_3:33052766-33052785 | Msa0948560:CDS | 25.0% |
| ! | ATTCCATAGAAGTAACTAAA+TGG | + | chr6_3:33052772-33052791 | None:intergenic | 25.0% |
| !!! | GATATTTTTGAGTAAACAAG+TGG | - | chr6_3:33052971-33052990 | Msa0948560:CDS | 25.0% |
| TTATGAGTTTGTGTTTGTGT+TGG | + | chr6_3:33048791-33048810 | None:intergenic | 30.0% | |
| TCTAAGTCAATTATAACTGG+TGG | + | chr6_3:33048882-33048901 | None:intergenic | 30.0% | |
| !!! | TGGATTCAGAGTTTTTTGAT+GGG | - | chr6_3:33049117-33049136 | Msa0948560:intron | 30.0% |
| !!! | ATAAACCTTTTAGCTCTCTT+AGG | + | chr6_3:33049305-33049324 | None:intergenic | 30.0% |
| ! | TATATGATGGAACATTACGA+CGG | - | chr6_3:33049521-33049540 | Msa0948560:intron | 30.0% |
| GTTAAGCAACATTGAGTTTA+GGG | - | chr6_3:33049627-33049646 | Msa0948560:intron | 30.0% | |
| ! | GACTTGTAGATTTTGTAGTT+AGG | - | chr6_3:33049790-33049809 | Msa0948560:intron | 30.0% |
| ! | TAGGAGAGTATATTTAATGG+AGG | - | chr6_3:33049809-33049828 | Msa0948560:intron | 30.0% |
| ! | AGGAGAGTATATTTAATGGA+GGG | - | chr6_3:33049810-33049829 | Msa0948560:intron | 30.0% |
| ! | AGTCTTGTACTGAAGTATAT+CGG | - | chr6_3:33050025-33050044 | Msa0948560:intron | 30.0% |
| TAACAAATCTGTGAATCAGT+TGG | - | chr6_3:33050089-33050108 | Msa0948560:intron | 30.0% | |
| AGTCTCATACTAAAGTTTCT+TGG | - | chr6_3:33050167-33050186 | Msa0948560:intron | 30.0% | |
| GTCTCATACTAAAGTTTCTT+GGG | - | chr6_3:33050168-33050187 | Msa0948560:intron | 30.0% | |
| CGATTCTAAGTTTAGAAGTT+TGG | - | chr6_3:33050267-33050286 | Msa0948560:intron | 30.0% | |
| AAGTTTAGAAGTTTGGATTC+TGG | - | chr6_3:33050274-33050293 | Msa0948560:intron | 30.0% | |
| ATCAAATTCACAAACACCAT+TGG | + | chr6_3:33050343-33050362 | None:intergenic | 30.0% | |
| !! | TTGTGGTTGATTCTAAGATT+AGG | - | chr6_3:33050512-33050531 | Msa0948560:intron | 30.0% |
| !! | TGTGGTTGATTCTAAGATTA+GGG | - | chr6_3:33050513-33050532 | Msa0948560:intron | 30.0% |
| ! | AAGATTAGGGGTTTGAATTT+TGG | - | chr6_3:33050526-33050545 | Msa0948560:intron | 30.0% |
| ! | TTTTGGACCTATATTTCAGA+TGG | - | chr6_3:33050543-33050562 | Msa0948560:intron | 30.0% |
| ! | GGATTTACCATCTGAAATAT+AGG | + | chr6_3:33050553-33050572 | None:intergenic | 30.0% |
| TATTTCAGATGGTAAATCCT+AGG | - | chr6_3:33050554-33050573 | Msa0948560:intron | 30.0% | |
| ATTCTATATATGTTGGTCCT+AGG | + | chr6_3:33050574-33050593 | None:intergenic | 30.0% | |
| TTTACAGGATTCTTGCTAAT+AGG | - | chr6_3:33050828-33050847 | Msa0948560:intron | 30.0% | |
| AAAGGAAATAACATACCTGA+AGG | + | chr6_3:33050964-33050983 | None:intergenic | 30.0% | |
| TTCAGAACAGTGAAATGAAA+AGG | + | chr6_3:33050982-33051001 | None:intergenic | 30.0% | |
| TGTTTGTAACATGTTCTTGT+TGG | - | chr6_3:33051031-33051050 | Msa0948560:intron | 30.0% | |
| ACATCATTGTTAAAGATGGA+GGG | + | chr6_3:33051069-33051088 | None:intergenic | 30.0% | |
| TACATCATTGTTAAAGATGG+AGG | + | chr6_3:33051070-33051089 | None:intergenic | 30.0% | |
| GGTAGGTATTTATGTCTATA+TGG | - | chr6_3:33051220-33051239 | Msa0948560:intron | 30.0% | |
| GAAAAGTTCAGATGATATGT+AGG | + | chr6_3:33051557-33051576 | None:intergenic | 30.0% | |
| ! | TCACATTCCTCTTTTATCAA+AGG | - | chr6_3:33051586-33051605 | Msa0948560:intron | 30.0% |
| ! | CACATTCCTCTTTTATCAAA+GGG | - | chr6_3:33051587-33051606 | Msa0948560:intron | 30.0% |
| ! | ACATTCCTCTTTTATCAAAG+GGG | - | chr6_3:33051588-33051607 | Msa0948560:intron | 30.0% |
| AATTACCCCTTTGATAAAAG+AGG | + | chr6_3:33051596-33051615 | None:intergenic | 30.0% | |
| TTAAGTAGTCTCAGGTTTAA+TGG | + | chr6_3:33051771-33051790 | None:intergenic | 30.0% | |
| ! | CTTTTCAAAACGTAGAAAGT+AGG | + | chr6_3:33051895-33051914 | None:intergenic | 30.0% |
| ! | TCCACAAAATTTTACGTAGA+TGG | - | chr6_3:33051969-33051988 | Msa0948560:intron | 30.0% |
| ! | ACCATCTACGTAAAATTTTG+TGG | + | chr6_3:33051973-33051992 | None:intergenic | 30.0% |
| TAAGTCAAGGAAAATAGGAT+TGG | + | chr6_3:33052041-33052060 | None:intergenic | 30.0% | |
| ATAGCTAAGTCAAGGAAAAT+AGG | + | chr6_3:33052046-33052065 | None:intergenic | 30.0% | |
| ATGATTGTATAGCTAAGTCA+AGG | + | chr6_3:33052054-33052073 | None:intergenic | 30.0% | |
| AATCTTATACGATATGGTGA+AGG | + | chr6_3:33052199-33052218 | None:intergenic | 30.0% | |
| CCGAAAAATCTTATACGATA+TGG | + | chr6_3:33052205-33052224 | None:intergenic | 30.0% | |
| TATGTAACAACTAACTGTAG+TGG | - | chr6_3:33052332-33052351 | Msa0948560:intron | 30.0% | |
| TCATCACAATACCACAAAAT+TGG | + | chr6_3:33052435-33052454 | None:intergenic | 30.0% | |
| TTCTACTAAAGTGACGTAAA+AGG | + | chr6_3:33052495-33052514 | None:intergenic | 30.0% | |
| CTTAAAACGACAACTACAAA+GGG | - | chr6_3:33052717-33052736 | Msa0948560:intron | 30.0% | |
| TTAAAACGACAACTACAAAG+GGG | - | chr6_3:33052718-33052737 | Msa0948560:intron | 30.0% | |
| GTTACTTCTATGGAATACAT+TGG | - | chr6_3:33052776-33052795 | Msa0948560:CDS | 30.0% | |
| TCACTAGTCAGAAAACTAAA+AGG | + | chr6_3:33052813-33052832 | None:intergenic | 30.0% | |
| TAAACAAGTGGTAATTATCC+AGG | - | chr6_3:33052983-33053002 | Msa0948560:CDS | 30.0% | |
| TATGTAATCCAACAAACCAA+GGG | + | chr6_3:33053027-33053046 | None:intergenic | 30.0% | |
| ATATGTAATCCAACAAACCA+AGG | + | chr6_3:33053028-33053047 | None:intergenic | 30.0% | |
| ATAATTGTTGCCTTTACATG+TGG | - | chr6_3:33053055-33053074 | Msa0948560:CDS | 30.0% | |
| CATCTAAAAACCACATGTAA+AGG | + | chr6_3:33053068-33053087 | None:intergenic | 30.0% | |
| !! | CTTTACATGTGGTTTTTAGA+TGG | - | chr6_3:33053066-33053085 | Msa0948560:CDS | 30.0% |
| ATTTAGATCATAGAGTGGTT+GGG | + | chr6_3:33053101-33053120 | None:intergenic | 30.0% | |
| AATTTAGATCATAGAGTGGT+TGG | + | chr6_3:33053102-33053121 | None:intergenic | 30.0% | |
| TTTGTGTTTGTGTTGGAACT+TGG | + | chr6_3:33048784-33048803 | None:intergenic | 35.0% | |
| ! | GGTTTTCTTGTGAAGTTGTT+TGG | + | chr6_3:33048858-33048877 | None:intergenic | 35.0% |
| AAGTCAATTATAACTGGTGG+TGG | + | chr6_3:33048879-33048898 | None:intergenic | 35.0% | |
| !!! | GTGGATTCAGAGTTTTTTGA+TGG | - | chr6_3:33049116-33049135 | Msa0948560:intron | 35.0% |
| !!! | TCAGAGTTTTTTGATGGGTT+AGG | - | chr6_3:33049122-33049141 | Msa0948560:intron | 35.0% |
| !!! | CAGAGTTTTTTGATGGGTTA+GGG | - | chr6_3:33049123-33049142 | Msa0948560:intron | 35.0% |
| !!! | TTTTTTGATGGGTTAGGGTT+TGG | - | chr6_3:33049128-33049147 | Msa0948560:intron | 35.0% |
| ACATAGGTATAGTAGTTCGA+TGG | - | chr6_3:33049190-33049209 | Msa0948560:intron | 35.0% | |
| TTGATCCTAAGAGAGCTAAA+AGG | - | chr6_3:33049297-33049316 | Msa0948560:intron | 35.0% | |
| TGAGATAGTAGGATAAGACT+TGG | - | chr6_3:33049566-33049585 | Msa0948560:intron | 35.0% | |
| AATCTGTAGTTTGACTCAGT+TGG | - | chr6_3:33049605-33049624 | Msa0948560:intron | 35.0% | |
| GGTTAAGCAACATTGAGTTT+AGG | - | chr6_3:33049626-33049645 | Msa0948560:intron | 35.0% | |
| TTAATGGAGGGTTGTCAAAT+AGG | - | chr6_3:33049822-33049841 | Msa0948560:intron | 35.0% | |
| TAATGGAGGGTTGTCAAATA+GGG | - | chr6_3:33049823-33049842 | Msa0948560:intron | 35.0% | |
| GTCTTGTACTGAAGTATATC+GGG | - | chr6_3:33050026-33050045 | Msa0948560:intron | 35.0% | |
| GTCAAATACCCTAATTACGA+TGG | - | chr6_3:33050213-33050232 | Msa0948560:intron | 35.0% | |
| TGGTCAATGACTAAAACCAA+TGG | - | chr6_3:33050324-33050343 | Msa0948560:intron | 35.0% | |
| !! | GTGGTTGATTCTAAGATTAG+GGG | - | chr6_3:33050514-33050533 | Msa0948560:intron | 35.0% |
| TTGTAACATGTTCTTGTTGG+TGG | - | chr6_3:33051034-33051053 | Msa0948560:intron | 35.0% | |
| !! | ATGTTCTTGTTGGTGGTTTA+TGG | - | chr6_3:33051041-33051060 | Msa0948560:intron | 35.0% |
| !!! | CTGTCTAATTTTGAGTTGTG+CGG | - | chr6_3:33051099-33051118 | Msa0948560:CDS | 35.0% |
| GCATATCCTTGGTATTATGT+GGG | + | chr6_3:33051143-33051162 | None:intergenic | 35.0% | |
| TGCATATCCTTGGTATTATG+TGG | + | chr6_3:33051144-33051163 | None:intergenic | 35.0% | |
| ATGCATGTATGCATGTGTAT+AGG | - | chr6_3:33051159-33051178 | Msa0948560:CDS | 35.0% | |
| ATGCATGTATGCATGTGTAT+AGG | - | chr6_3:33051159-33051178 | Msa0948560:CDS | 35.0% | |
| TATGCATGTGTATAGGTACT+AGG | - | chr6_3:33051199-33051218 | Msa0948560:intron | 35.0% | |
| GTTTCAGATTAAGTAGTCTC+AGG | + | chr6_3:33051779-33051798 | None:intergenic | 35.0% | |
| ! | ATTATCCGTCTTCTGTTTTG+TGG | - | chr6_3:33051829-33051848 | Msa0948560:intron | 35.0% |
| CTAAACCACAAAACAGAAGA+CGG | + | chr6_3:33051837-33051856 | None:intergenic | 35.0% | |
| TGGAAATACAAGCACGAAAT+TGG | + | chr6_3:33051953-33051972 | None:intergenic | 35.0% | |
| ! | AATTTTACGTAGATGGTCCT+AGG | - | chr6_3:33051976-33051995 | Msa0948560:intron | 35.0% |
| TCAAGGAAAATAGGATTGGA+TGG | + | chr6_3:33052037-33052056 | None:intergenic | 35.0% | |
| !! | CTGCAGTACATCTTTTAGTT+AGG | + | chr6_3:33052121-33052140 | None:intergenic | 35.0% |
| CCTACTTCAACGATGTAAAA+TGG | + | chr6_3:33052231-33052250 | None:intergenic | 35.0% | |
| ! | CCATTTTACATCGTTGAAGT+AGG | - | chr6_3:33052228-33052247 | Msa0948560:intron | 35.0% |
| TTTACATCGTTGAAGTAGGT+TGG | - | chr6_3:33052232-33052251 | Msa0948560:intron | 35.0% | |
| ! | TTTTCTGATCCATAATCCGA+TGG | - | chr6_3:33052259-33052278 | Msa0948560:intron | 35.0% |
| !!! | CCTTTGTAGTTGTCGTTTTA+AGG | + | chr6_3:33052719-33052738 | None:intergenic | 35.0% |
| CCTTAAAACGACAACTACAA+AGG | - | chr6_3:33052716-33052735 | Msa0948560:intron | 35.0% | |
| TGACTAGTGACTATGTTAGA+GGG | - | chr6_3:33052823-33052842 | Msa0948560:CDS | 35.0% | |
| AGGGCTTTCTTCCATAATAT+TGG | - | chr6_3:33052842-33052861 | Msa0948560:CDS | 35.0% | |
| GGGCTTTCTTCCATAATATT+GGG | - | chr6_3:33052843-33052862 | Msa0948560:CDS | 35.0% | |
| TCCATAATATTGGGAGAGAT+TGG | - | chr6_3:33052852-33052871 | Msa0948560:CDS | 35.0% | |
| CCAAGATTCAAATCGTGAAT+CGG | + | chr6_3:33052926-33052945 | None:intergenic | 35.0% | |
| ATGTAATCCAACAAACCAAG+GGG | + | chr6_3:33053026-33053045 | None:intergenic | 35.0% | |
| !! | CATGTGGTTTTTAGATGGAT+AGG | - | chr6_3:33053071-33053090 | Msa0948560:CDS | 35.0% |
| TGATTTGACTGCTCAGAATA+AGG | - | chr6_3:33053256-33053275 | Msa0948560:five_prime_UTR | 35.0% | |
| TTTGTGTTGGAACTTGGAAG+TGG | + | chr6_3:33048778-33048797 | None:intergenic | 40.0% | |
| AGGTATAGTAGTTCGATGGA+TGG | - | chr6_3:33049194-33049213 | Msa0948560:intron | 40.0% | |
| GGTATAGTAGTTCGATGGAT+GGG | - | chr6_3:33049195-33049214 | Msa0948560:intron | 40.0% | |
| TGGTGTGAAGAAATCTATGC+CGG | - | chr6_3:33049247-33049266 | Msa0948560:intron | 40.0% | |
| CTATCTCAGATCAGCTACAT+GGG | + | chr6_3:33049554-33049573 | None:intergenic | 40.0% | |
| ACTATCTCAGATCAGCTACA+TGG | + | chr6_3:33049555-33049574 | None:intergenic | 40.0% | |
| ! | TGTAGCTGATCTGAGATAGT+AGG | - | chr6_3:33049555-33049574 | Msa0948560:intron | 40.0% |
| AAGCAACATTGAGTTTAGGG+TGG | - | chr6_3:33049630-33049649 | Msa0948560:intron | 40.0% | |
| ! | AGCAACATTGAGTTTAGGGT+GGG | - | chr6_3:33049631-33049650 | Msa0948560:intron | 40.0% |
| ! | TATGTGTTTATGACCGGCTT+AGG | - | chr6_3:33049745-33049764 | Msa0948560:intron | 40.0% |
| ! | ATGTGTTTATGACCGGCTTA+GGG | - | chr6_3:33049746-33049765 | Msa0948560:intron | 40.0% |
| ATGAAGTTTACCCCACTTTG+TGG | - | chr6_3:33049920-33049939 | Msa0948560:intron | 40.0% | |
| TGAAGTTTACCCCACTTTGT+GGG | - | chr6_3:33049921-33049940 | Msa0948560:intron | 40.0% | |
| AAGTATATCGGGATACTCTG+AGG | - | chr6_3:33050037-33050056 | Msa0948560:intron | 40.0% | |
| TGTGAATCAGTTGGTTAAGC+AGG | - | chr6_3:33050098-33050117 | Msa0948560:intron | 40.0% | |
| GTGAATCAGTTGGTTAAGCA+GGG | - | chr6_3:33050099-33050118 | Msa0948560:intron | 40.0% | |
| GGATACTATGACGAACATCT+GGG | - | chr6_3:33050189-33050208 | Msa0948560:intron | 40.0% | |
| AACTCGATATACAAGTGAGC+TGG | - | chr6_3:33050880-33050899 | Msa0948560:intron | 40.0% | |
| TGTGCGGTCATAACTGTTTA+TGG | - | chr6_3:33051115-33051134 | Msa0948560:CDS | 40.0% | |
| ATGGAACCCACATAATACCA+AGG | - | chr6_3:33051134-33051153 | Msa0948560:CDS | 40.0% | |
| CATGCATACATGCATATCCT+TGG | + | chr6_3:33051154-33051173 | None:intergenic | 40.0% | |
| ATGCATGTGTATAGGTACCA+AGG | - | chr6_3:33051167-33051186 | Msa0948560:CDS | 40.0% | |
| CATGCATACATGCATATCCT+TGG | + | chr6_3:33051154-33051173 | None:intergenic | 40.0% | |
| CATGTGTATAGGTACTAGGT+AGG | - | chr6_3:33051203-33051222 | Msa0948560:intron | 40.0% | |
| AGTACAGTGTCCAAATGCAA+GGG | + | chr6_3:33051510-33051529 | None:intergenic | 40.0% | |
| CTGTACTCATAACTCTGAAC+TGG | - | chr6_3:33051523-33051542 | Msa0948560:intron | 40.0% | |
| TGGTTCACAATCAGAATCAG+TGG | + | chr6_3:33051751-33051770 | None:intergenic | 40.0% | |
| ! | AAACCTTTTTATCCTGGCCT+AGG | + | chr6_3:33051996-33052015 | None:intergenic | 40.0% |
| TGAAGGCTCGACTTATAATC+AGG | + | chr6_3:33052182-33052201 | None:intergenic | 40.0% | |
| AGTGACGTAAAAGGATCAGA+TGG | + | chr6_3:33052486-33052505 | None:intergenic | 40.0% | |
| CTGACTAGTGACTATGTTAG+AGG | - | chr6_3:33052822-33052841 | Msa0948560:CDS | 40.0% | |
| GCCAATCTCTCCCAATATTA+TGG | + | chr6_3:33052856-33052875 | None:intergenic | 40.0% | |
| CCGATTCACGATTTGAATCT+TGG | - | chr6_3:33052923-33052942 | Msa0948560:CDS | 40.0% | |
| !! | GTGGTTTTTAGATGGATAGG+TGG | - | chr6_3:33053074-33053093 | Msa0948560:CDS | 40.0% |
| ATTCTGAGCAGTCAAATCAG+TGG | + | chr6_3:33053255-33053274 | None:intergenic | 40.0% | |
| CAACAAGCAAAGCTTAGAGA+AGG | - | chr6_3:33053308-33053327 | Msa0948560:five_prime_UTR | 40.0% | |
| !!! | GAGAGAGTTTTCAGGTGGTT+GGG | + | chr6_3:33048720-33048739 | None:intergenic | 45.0% |
| !!! | AGAGAGAGTTTTCAGGTGGT+TGG | + | chr6_3:33048721-33048740 | None:intergenic | 45.0% |
| !! | AGAGAGAGAGAGTTTTCAGG+TGG | + | chr6_3:33048725-33048744 | None:intergenic | 45.0% |
| ! | GAGAGAGAGAGAGAGTTTTC+AGG | + | chr6_3:33048728-33048747 | None:intergenic | 45.0% |
| TTGGAGATATCGAAGTCGGA+CGG | + | chr6_3:33049002-33049021 | None:intergenic | 45.0% | |
| GAGGTTGGAGATATCGAAGT+CGG | + | chr6_3:33049006-33049025 | None:intergenic | 45.0% | |
| ATGGACTCATCAGAGTCCAT+CGG | + | chr6_3:33049053-33049072 | None:intergenic | 45.0% | |
| ATGGACTCTGATGAGTCCAT+CGG | - | chr6_3:33049053-33049072 | Msa0948560:intron | 45.0% | |
| !! | TTTGATGGGTTAGGGTTTGG+TGG | - | chr6_3:33049131-33049150 | Msa0948560:intron | 45.0% |
| AAGGGGAGAAAGTTGAAGAG+AGG | - | chr6_3:33049156-33049175 | Msa0948560:intron | 45.0% | |
| GGAGAAAGTTGAAGAGAGGA+AGG | - | chr6_3:33049160-33049179 | Msa0948560:intron | 45.0% | |
| AGAGGAAGGTGAGTAGACAT+AGG | - | chr6_3:33049174-33049193 | Msa0948560:intron | 45.0% | |
| ! | GAGATGGGGTTGTTTGAAGT+TGG | - | chr6_3:33049221-33049240 | Msa0948560:intron | 45.0% |
| !! | GGGTTGTTTGAAGTTGGTGA+TGG | - | chr6_3:33049227-33049246 | Msa0948560:intron | 45.0% |
| AGTTCAGCAAGTTTCTCAGC+CGG | + | chr6_3:33049269-33049288 | None:intergenic | 45.0% | |
| ! | GCAACATTGAGTTTAGGGTG+GGG | - | chr6_3:33049632-33049651 | Msa0948560:intron | 45.0% |
| ! | CAACATTGAGTTTAGGGTGG+GGG | - | chr6_3:33049633-33049652 | Msa0948560:intron | 45.0% |
| ! | AACATTGAGTTTAGGGTGGG+GGG | - | chr6_3:33049634-33049653 | Msa0948560:intron | 45.0% |
| CGAATAGGTATTTGGCAACC+AGG | + | chr6_3:33049699-33049718 | None:intergenic | 45.0% | |
| TGCCAAATACCTATTCGCGT+TGG | - | chr6_3:33049702-33049721 | Msa0948560:intron | 45.0% | |
| TTTAAGAGGCCAACGCGAAT+AGG | + | chr6_3:33049714-33049733 | None:intergenic | 45.0% | |
| AAGCGTTATCCCACAAAGTG+GGG | + | chr6_3:33049933-33049952 | None:intergenic | 45.0% | |
| CAAGCGTTATCCCACAAAGT+GGG | + | chr6_3:33049934-33049953 | None:intergenic | 45.0% | |
| TCAAGCGTTATCCCACAAAG+TGG | + | chr6_3:33049935-33049954 | None:intergenic | 45.0% | |
| TAGCCAATCTGTGACTCAGT+TGG | - | chr6_3:33049966-33049985 | Msa0948560:intron | 45.0% | |
| TAGCCAACTGAGTCACAGAT+TGG | + | chr6_3:33049972-33049991 | None:intergenic | 45.0% | |
| GGGATACTATGACGAACATC+TGG | - | chr6_3:33050188-33050207 | Msa0948560:intron | 45.0% | |
| GATATACAAGTGAGCTGGAG+AGG | - | chr6_3:33050885-33050904 | Msa0948560:intron | 45.0% | |
| TGCACAACTTACAGTCCTTC+AGG | - | chr6_3:33050946-33050965 | Msa0948560:intron | 45.0% | |
| GAGTACAGTGTCCAAATGCA+AGG | + | chr6_3:33051511-33051530 | None:intergenic | 45.0% | |
| !! | AAAGGAGTGCCATCGGATTA+TGG | + | chr6_3:33052271-33052290 | None:intergenic | 45.0% |
| ACTACAAAGGGGAGCAATGT+CGG | - | chr6_3:33052729-33052748 | Msa0948560:CDS | 45.0% | |
| GAGCAATGTCGGAATTCTCA+AGG | - | chr6_3:33052740-33052759 | Msa0948560:CDS | 45.0% | |
| TGAAATTAACAGCGTGCGAG+AGG | + | chr6_3:33053155-33053174 | None:intergenic | 45.0% | |
| ! | AAGCTTTGCTTGTTGCTCGA+AGG | + | chr6_3:33053303-33053322 | None:intergenic | 45.0% |
| !! | TTAAACATATATATAATTTA+GGG | + | chr6_3:33050072-33050091 | None:intergenic | 5.0% |
| !! | AATTAAAAAAAAAAGATAAA+AGG | - | chr6_3:33050754-33050773 | Msa0948560:intron | 5.0% |
| !! | ATTAAAAAAAAAAGATAAAA+GGG | - | chr6_3:33050755-33050774 | Msa0948560:intron | 5.0% |
| TTGGAACTTGGAAGTGGTGG+TGG | + | chr6_3:33048772-33048791 | None:intergenic | 50.0% | |
| GTGTTGGAACTTGGAAGTGG+TGG | + | chr6_3:33048775-33048794 | None:intergenic | 50.0% | |
| AAACCATGCCACCATCACGT+GGG | - | chr6_3:33048901-33048920 | Msa0948560:intron | 50.0% | |
| AGGTGGTGTCTGAGTGAGAA+CGG | + | chr6_3:33048938-33048957 | None:intergenic | 50.0% | |
| !! | GAAGTTTGCTGCGAAACGGA+AGG | + | chr6_3:33048958-33048977 | None:intergenic | 50.0% |
| !! | CGTCGAAGTTTGCTGCGAAA+CGG | + | chr6_3:33048962-33048981 | None:intergenic | 50.0% |
| TGGAGATATCGAAGTCGGAC+GGG | + | chr6_3:33049001-33049020 | None:intergenic | 50.0% | |
| TGGACTCATCAGAGTCCATC+GGG | + | chr6_3:33049052-33049071 | None:intergenic | 50.0% | |
| TGGACTCTGATGAGTCCATC+GGG | - | chr6_3:33049054-33049073 | Msa0948560:intron | 50.0% | |
| GCATCTCAGGAGTTTGTCTG+TGG | - | chr6_3:33049097-33049116 | Msa0948560:intron | 50.0% | |
| !! | GGTTAGGGTTTGGTGGTGAA+GGG | - | chr6_3:33049138-33049157 | Msa0948560:intron | 50.0% |
| !! | GTTAGGGTTTGGTGGTGAAG+GGG | - | chr6_3:33049139-33049158 | Msa0948560:intron | 50.0% |
| TTCGATGGATGGGTCTGAGA+TGG | - | chr6_3:33049205-33049224 | Msa0948560:intron | 50.0% | |
| ! | TCGATGGATGGGTCTGAGAT+GGG | - | chr6_3:33049206-33049225 | Msa0948560:intron | 50.0% |
| !! | GGTTTGTTGGGGGTACTCTA+AGG | - | chr6_3:33049669-33049688 | Msa0948560:intron | 50.0% |
| GGCCAACGCGAATAGGTATT+TGG | + | chr6_3:33049707-33049726 | None:intergenic | 50.0% | |
| ! | TGTTTATGACCGGCTTAGGG+AGG | - | chr6_3:33049749-33049768 | Msa0948560:intron | 50.0% |
| TTAAGCAGGGCTGAGTCTGT+GGG | - | chr6_3:33050112-33050131 | Msa0948560:intron | 50.0% | |
| GGACTGTAAGTTGTGCAGAG+AGG | + | chr6_3:33050943-33050962 | None:intergenic | 50.0% | |
| GCGTTACAACCCATGAAGCA+CGG | - | chr6_3:33051339-33051358 | Msa0948560:intron | 50.0% | |
| AACGAGTGTCCGTGCTTCAT+GGG | + | chr6_3:33051351-33051370 | None:intergenic | 50.0% | |
| TAACGAGTGTCCGTGCTTCA+TGG | + | chr6_3:33051352-33051371 | None:intergenic | 50.0% | |
| ATGAAGCACGGACACTCGTT+AGG | - | chr6_3:33051351-33051370 | Msa0948560:intron | 50.0% | |
| GTGTGTGCTTCCCTTGCATT+TGG | - | chr6_3:33051497-33051516 | Msa0948560:intron | 50.0% | |
| GGTCCTAGGCCAGGATAAAA+AGG | - | chr6_3:33051990-33052009 | Msa0948560:intron | 50.0% | |
| !! | ACCATGGAAAGGAGTGCCAT+CGG | + | chr6_3:33052278-33052297 | None:intergenic | 50.0% |
| !! | CTAACTGTAGTGGACGCTAC+TGG | - | chr6_3:33052342-33052361 | Msa0948560:intron | 50.0% |
| ACAAACCAAGGGGACCATGT+GGG | + | chr6_3:33053016-33053035 | None:intergenic | 50.0% | |
| AACAAACCAAGGGGACCATG+TGG | + | chr6_3:33053017-33053036 | None:intergenic | 50.0% | |
| !! | ACATGGTCCCCTTGGTTTGT+TGG | - | chr6_3:33053016-33053035 | Msa0948560:CDS | 50.0% |
| !! | AGTGGTGGTGGTGGTTGAAG+TGG | + | chr6_3:33048760-33048779 | None:intergenic | 55.0% |
| !! | GAACTTGGAAGTGGTGGTGG+TGG | + | chr6_3:33048769-33048788 | None:intergenic | 55.0% |
| GAAACCATGCCACCATCACG+TGG | - | chr6_3:33048900-33048919 | Msa0948560:intron | 55.0% | |
| TGGTGTCTGAGTGAGAACGG+CGG | + | chr6_3:33048935-33048954 | None:intergenic | 55.0% | |
| ! | GTTTGCTGCGAAACGGAAGG+TGG | + | chr6_3:33048955-33048974 | None:intergenic | 55.0% |
| ATCGGGAAGTCAGCGTCAGA+GGG | - | chr6_3:33049071-33049090 | Msa0948560:intron | 55.0% | |
| !! | GGGTTAGGGTTTGGTGGTGA+AGG | - | chr6_3:33049137-33049156 | Msa0948560:intron | 55.0% |
| ! | CGATGGATGGGTCTGAGATG+GGG | - | chr6_3:33049207-33049226 | Msa0948560:intron | 55.0% |
| ! | ATTGAGTTTAGGGTGGGGGG+AGG | - | chr6_3:33049637-33049656 | Msa0948560:intron | 55.0% |
| ! | TTGAGTTTAGGGTGGGGGGA+GGG | - | chr6_3:33049638-33049657 | Msa0948560:intron | 55.0% |
| !! | AGGGGGCACTGAGGTTTGTT+GGG | - | chr6_3:33049657-33049676 | Msa0948560:intron | 55.0% |
| ! | TATGACCGGCTTAGGGAGGT+TGG | - | chr6_3:33049753-33049772 | Msa0948560:intron | 55.0% |
| ! | ATGACCGGCTTAGGGAGGTT+GGG | - | chr6_3:33049754-33049773 | Msa0948560:intron | 55.0% |
| CATACCCAACCTCCCTAAGC+CGG | + | chr6_3:33049761-33049780 | None:intergenic | 55.0% | |
| GCTTAGGGAGGTTGGGTATG+TGG | - | chr6_3:33049761-33049780 | Msa0948560:intron | 55.0% | |
| GTTAAGCAGGGCTGAGTCTG+TGG | - | chr6_3:33050111-33050130 | Msa0948560:intron | 55.0% | |
| TAAGCAGGGCTGAGTCTGTG+GGG | - | chr6_3:33050113-33050132 | Msa0948560:intron | 55.0% | |
| CTGCTGCACGATCGAAAGAG+AGG | - | chr6_3:33050855-33050874 | Msa0948560:intron | 55.0% | |
| GCACGGACACTCGTTAGGTT+AGG | - | chr6_3:33051356-33051375 | Msa0948560:intron | 55.0% | |
| TCGTTAGGTTAGGCGTGTCC+CGG | - | chr6_3:33051366-33051385 | Msa0948560:intron | 55.0% | |
| ! | TCCCGGTGTCGAACATGCAT+CGG | - | chr6_3:33051383-33051402 | Msa0948560:intron | 55.0% |
| ACCGATGCATGTTCGACACC+GGG | + | chr6_3:33051387-33051406 | None:intergenic | 55.0% | |
| CACCGATGCATGTTCGACAC+CGG | + | chr6_3:33051388-33051407 | None:intergenic | 55.0% | |
| ! | TGCAAGGGAAGCACACACAC+TGG | + | chr6_3:33051495-33051514 | None:intergenic | 55.0% |
| TACGTAGATGGTCCTAGGCC+AGG | - | chr6_3:33051981-33052000 | Msa0948560:intron | 55.0% | |
| TCCGATGGCACTCCTTTCCA+TGG | - | chr6_3:33052274-33052293 | Msa0948560:intron | 55.0% | |
| CACTCCTTTCCATGGTGCAG+CGG | - | chr6_3:33052282-33052301 | Msa0948560:intron | 55.0% | |
| ATCCAGGCATCCAACCCACA+TGG | - | chr6_3:33052999-33053018 | Msa0948560:CDS | 55.0% | |
| TGAGTGAGAACGGCGGTGGT+GGG | + | chr6_3:33048928-33048947 | None:intergenic | 60.0% | |
| TGTCTGAGTGAGAACGGCGG+TGG | + | chr6_3:33048932-33048951 | None:intergenic | 60.0% | |
| ATCGAAGTCGGACGGGTCGA+AGG | + | chr6_3:33048994-33049013 | None:intergenic | 60.0% | |
| AGTCCATCGGGACAGCGTCA+GGG | + | chr6_3:33049040-33049059 | None:intergenic | 60.0% | |
| !! | CTCTGACGCTGACTTCCCGA+TGG | + | chr6_3:33049072-33049091 | None:intergenic | 60.0% |
| CATCGGGAAGTCAGCGTCAG+AGG | - | chr6_3:33049070-33049089 | Msa0948560:intron | 60.0% | |
| GGAAGTCAGCGTCAGAGGGA+CGG | - | chr6_3:33049075-33049094 | Msa0948560:intron | 60.0% | |
| ! | TGAGTTTAGGGTGGGGGGAG+GGG | - | chr6_3:33049639-33049658 | Msa0948560:intron | 60.0% |
| !! | GAGGGGGCACTGAGGTTTGT+TGG | - | chr6_3:33049656-33049675 | Msa0948560:intron | 60.0% |
| !! | GGGGGCACTGAGGTTTGTTG+GGG | - | chr6_3:33049658-33049677 | Msa0948560:intron | 60.0% |
| !! | GGGGCACTGAGGTTTGTTGG+GGG | - | chr6_3:33049659-33049678 | Msa0948560:intron | 60.0% |
| !! | GGGGTACTCTAAGGTGTGCC+TGG | - | chr6_3:33049678-33049697 | Msa0948560:intron | 60.0% |
| AAGCAGGGCTGAGTCTGTGG+GGG | - | chr6_3:33050114-33050133 | Msa0948560:intron | 60.0% | |
| CATGCCGCTGCACCATGGAA+AGG | + | chr6_3:33052289-33052308 | None:intergenic | 60.0% | |
| !! | GACCATGTGGGTTGGATGCC+TGG | + | chr6_3:33053004-33053023 | None:intergenic | 60.0% |
| TCCAACCCACATGGTCCCCT+TGG | - | chr6_3:33053008-33053027 | Msa0948560:CDS | 60.0% | |
| ACCAAGGGGACCATGTGGGT+TGG | + | chr6_3:33053012-33053031 | None:intergenic | 60.0% | |
| !! | GGTCCCACGTGATGGTGGCA+TGG | + | chr6_3:33048907-33048926 | None:intergenic | 65.0% |
| ! | TGGTGGGTCCCACGTGATGG+TGG | + | chr6_3:33048912-33048931 | None:intergenic | 65.0% |
| CTGAGTGAGAACGGCGGTGG+TGG | + | chr6_3:33048929-33048948 | None:intergenic | 65.0% | |
| AGTCGGACGGGTCGAAGGTG+AGG | + | chr6_3:33048989-33049008 | None:intergenic | 65.0% | |
| ATCGGGACAGCGTCAGGGGA+CGG | + | chr6_3:33049035-33049054 | None:intergenic | 65.0% | |
| GTCCATCGGGACAGCGTCAG+GGG | + | chr6_3:33049039-33049058 | None:intergenic | 65.0% | |
| GAGTCCATCGGGACAGCGTC+AGG | + | chr6_3:33049041-33049060 | None:intergenic | 65.0% | |
| CGTCAGAGGGACGGCATCTC+AGG | - | chr6_3:33049084-33049103 | Msa0948560:intron | 65.0% | |
| ! | GAGTTTAGGGTGGGGGGAGG+GGG | - | chr6_3:33049640-33049659 | Msa0948560:intron | 65.0% |
| AGCAGGGCTGAGTCTGTGGG+GGG | - | chr6_3:33050115-33050134 | Msa0948560:intron | 65.0% | |
| AGTCTGTGGGGGGAGGACTG+AGG | - | chr6_3:33050125-33050144 | Msa0948560:intron | 65.0% | |
| GCACTCATGCCGCTGCACCA+TGG | + | chr6_3:33052294-33052313 | None:intergenic | 65.0% | |
| !! | CGGTGGTGGGTCCCACGTGA+TGG | + | chr6_3:33048915-33048934 | None:intergenic | 70.0% |
| AGGGGACGGGAGAGGGAGGT+TGG | + | chr6_3:33049021-33049040 | None:intergenic | 70.0% | |
| CAGCGTCAGGGGACGGGAGA+GGG | + | chr6_3:33049028-33049047 | None:intergenic | 70.0% | |
| ACAGCGTCAGGGGACGGGAG+AGG | + | chr6_3:33049029-33049048 | None:intergenic | 70.0% | |
| TCGGGACAGCGTCAGGGGAC+GGG | + | chr6_3:33049034-33049053 | None:intergenic | 70.0% | |
| GTCCCCTGACGCTGTCCCGA+TGG | - | chr6_3:33049034-33049053 | Msa0948560:intron | 70.0% | |
| AGGGCTGAGTCTGTGGGGGG+AGG | - | chr6_3:33050118-33050137 | Msa0948560:intron | 70.0% | |
| CGTCAGGGGACGGGAGAGGG+AGG | + | chr6_3:33049025-33049044 | None:intergenic | 75.0% | |
| !!! | GGTGGGGGGAGGGGGCACTG+AGG | - | chr6_3:33049648-33049667 | Msa0948560:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 33048678 | 33053361 | 33048678 | ID=Msa0948560;Name=Msa0948560 |
| chr6_3 | mRNA | 33048678 | 33053361 | 33048678 | ID=Msa0948560-mRNA-1;Parent=Msa0948560;Name=Msa0948560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=171|0.5|0.66|1|1|1|3|0|239 |
| chr6_3 | exon | 33048678 | 33048794 | 33048678 | ID=Msa0948560-mRNA-1:exon:8562;Parent=Msa0948560-mRNA-1 |
| chr6_3 | exon | 33051072 | 33051204 | 33051072 | ID=Msa0948560-mRNA-1:exon:8561;Parent=Msa0948560-mRNA-1 |
| chr6_3 | exon | 33052721 | 33053361 | 33052721 | ID=Msa0948560-mRNA-1:exon:8560;Parent=Msa0948560-mRNA-1 |
| chr6_3 | five_prime_UTR | 33053191 | 33053361 | 33053191 | ID=Msa0948560-mRNA-1:five_prime_utr;Parent=Msa0948560-mRNA-1 |
| chr6_3 | CDS | 33052721 | 33053190 | 33052721 | ID=Msa0948560-mRNA-1:cds;Parent=Msa0948560-mRNA-1 |
| chr6_3 | CDS | 33051072 | 33051204 | 33051072 | ID=Msa0948560-mRNA-1:cds;Parent=Msa0948560-mRNA-1 |
| chr6_3 | CDS | 33048678 | 33048794 | 33048678 | ID=Msa0948560-mRNA-1:cds;Parent=Msa0948560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
