Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951530 | XP_013452135.1 | 97.426 | 544 | 8 | 1 | 1 | 544 | 1 | 538 | 0.0 | 1063 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951530 | sp|Q9AV23|LSI3_ORYSJ | 52.844 | 545 | 190 | 5 | 1 | 543 | 1 | 480 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951530 | A0A072UAN3 | 97.426 | 544 | 8 | 1 | 1 | 544 | 1 | 538 | 0.0 | 1063 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0194720 | Msa0951530 | 0.800402 | 1.466076e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951530 | MtrunA17_Chr6g0467831 | 97.426 | 544 | 8 | 1 | 1 | 544 | 1 | 538 | 0.0 | 1063 |
| Msa0951530 | MtrunA17_Chr8g0352841 | 92.779 | 457 | 33 | 0 | 1 | 457 | 1 | 457 | 0.0 | 868 |
| Msa0951530 | MtrunA17_Chr8g0352851 | 96.386 | 83 | 3 | 0 | 462 | 544 | 16 | 98 | 1.81e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951530 | AT1G02260.2 | 66.971 | 548 | 131 | 6 | 1 | 544 | 1 | 502 | 0.0 | 726 |
| Msa0951530 | AT1G02260.1 | 66.971 | 548 | 131 | 6 | 1 | 544 | 1 | 502 | 0.0 | 726 |
Find 90 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAATTCCAAGTGCTTTA+TGG | 0.120821 | 6_3:+42639293 | Msa0951530:CDS |
| TATACTTGTCCTATCAAATT+TGG | 0.181872 | 6_3:+42639378 | Msa0951530:CDS |
| TTCTGGAGTCATTTGAAATT+TGG | 0.188552 | 6_3:+42640363 | Msa0951530:CDS |
| ACATAGGAAAATTACTTTCT+TGG | 0.213251 | 6_3:+42638211 | Msa0951530:CDS |
| ATTGAACCTAAAACAACTTT+TGG | 0.239033 | 6_3:-42637970 | None:intergenic |
| TTCTTGATATACAAGTTAAA+TGG | 0.258202 | 6_3:+42640503 | Msa0951530:three_prime_UTR |
| GAACGATCAACTCGCGAATA+AGG | 0.283924 | 6_3:-42639328 | None:intergenic |
| TTTCTACAACAGAACCCTTT+TGG | 0.295130 | 6_3:-42640458 | None:intergenic |
| ATTGTTCCTGCTATGCTTAT+AGG | 0.304295 | 6_3:+42638501 | Msa0951530:CDS |
| TTGTAGAATCTGTTTGATTT+CGG | 0.307692 | 6_3:+42638260 | Msa0951530:CDS |
| TGTGTTTATATGATTACATT+AGG | 0.308469 | 6_3:+42639002 | Msa0951530:CDS |
| TGGAATTCCAAGTGCTTTAT+GGG | 0.317249 | 6_3:+42639294 | Msa0951530:CDS |
| TATCATACACATTGACATTC+TGG | 0.318666 | 6_3:+42640346 | Msa0951530:CDS |
| AAATTCCATGGTATTGATAA+TGG | 0.320709 | 6_3:+42637881 | Msa0951530:five_prime_UTR |
| TCAGCTGCAACTTCCGCAAT+AGG | 0.340152 | 6_3:-42638597 | None:intergenic |
| ACTATTATAGTCACTGCTAT+TGG | 0.340356 | 6_3:+42640396 | Msa0951530:CDS |
| GGAATGTTTATCACAGTAGA+TGG | 0.344038 | 6_3:+42639259 | Msa0951530:CDS |
| AGCAGGGAACCTGTCACTAT+TGG | 0.345978 | 6_3:+42640272 | Msa0951530:CDS |
| AAGTGCTTTATGGGAGTTGA+TGG | 0.347243 | 6_3:+42639303 | Msa0951530:CDS |
| GTAGATGGATTCAACAAAAC+TGG | 0.348050 | 6_3:+42639274 | Msa0951530:CDS |
| GTTCTACCAATTGGTAGAAA+TGG | 0.355990 | 6_3:-42638036 | None:intergenic |
| CATTTGAAGCCAAATTTGAT+AGG | 0.362242 | 6_3:-42639387 | None:intergenic |
| CGCTATCACTCGAAATCATT+CGG | 0.382606 | 6_3:-42638758 | None:intergenic |
| TGATTCTTATAGCTATGTAT+TGG | 0.385215 | 6_3:+42638541 | Msa0951530:CDS |
| AAAATACAAACTTGTGGTAT+AGG | 0.390355 | 6_3:+42637077 | Msa0951530:five_prime_UTR |
| ATTGCAGCGTACGCTTCTTC+CGG | 0.394105 | 6_3:-42638111 | None:intergenic |
| TATGTCGTGGACTGCAATTT+CGG | 0.400089 | 6_3:+42639055 | Msa0951530:CDS |
| ATTTGTTGTTGAACTCCAAA+AGG | 0.400419 | 6_3:+42640443 | Msa0951530:three_prime_UTR |
| GATCCTGCTGTTCTACCAAT+TGG | 0.408518 | 6_3:-42638045 | None:intergenic |
| CCGAAAAGAAGACCGAGAAT+TGG | 0.409478 | 6_3:-42638141 | None:intergenic |
| GCAGTTCCATTTCTACCAAT+TGG | 0.420465 | 6_3:+42638030 | Msa0951530:CDS |
| GGTTCCTCGGCTACGCCAAT+TGG | 0.424218 | 6_3:+42638414 | Msa0951530:CDS |
| ATGTTGATTGCAATGCTTCT+TGG | 0.424623 | 6_3:+42639026 | Msa0951530:CDS |
| CGAGTGATAGCGAAATTGAT+AGG | 0.429807 | 6_3:+42638769 | Msa0951530:CDS |
| AGAATGTCAATGTGTATGAT+AGG | 0.432270 | 6_3:-42640344 | None:intergenic |
| GCAGGGAACCTGTCACTATT+GGG | 0.435913 | 6_3:+42640273 | Msa0951530:CDS |
| GCAATCGATCTTCCAATTCT+CGG | 0.438203 | 6_3:+42638129 | Msa0951530:CDS |
| CTTAATTCTCAAGAGTTGAA+TGG | 0.444464 | 6_3:+42638678 | Msa0951530:CDS |
| TTTCCCAAGCAGATGAGAAA+AGG | 0.450561 | 6_3:+42640217 | Msa0951530:CDS |
| TTACTTTCTTGGAAAAGTAA+AGG | 0.451454 | 6_3:+42638222 | Msa0951530:CDS |
| GAAAAGGGCATGGCTCATAT+TGG | 0.453294 | 6_3:+42640233 | Msa0951530:CDS |
| GTCGAGAGTAAAATTTCATT+CGG | 0.459818 | 6_3:+42638462 | Msa0951530:CDS |
| GTCAATGTGTATGATAGGTT+TGG | 0.462325 | 6_3:-42640339 | None:intergenic |
| GCTTGGGTCAGCACTATAGC+AGG | 0.474992 | 6_3:+42640255 | Msa0951530:CDS |
| ATTGGTAGAAATGGAACTGC+TGG | 0.479127 | 6_3:-42638027 | None:intergenic |
| CTACCAATTGGTAGAACAGC+AGG | 0.479216 | 6_3:+42638042 | Msa0951530:CDS |
| TATAGTACCTTCTCTAAACT+TGG | 0.480464 | 6_3:-42639119 | None:intergenic |
| GGCATGGCTCATATTGGCTT+GGG | 0.482781 | 6_3:+42640239 | Msa0951530:CDS |
| GGGCATGGCTCATATTGGCT+TGG | 0.487511 | 6_3:+42640238 | Msa0951530:CDS |
| TTGGCTTCAAATGTACCAAC+CGG | 0.487561 | 6_3:+42639397 | Msa0951530:CDS |
| AAGTGCTAACATTGGTTCCT+CGG | 0.489479 | 6_3:+42638401 | Msa0951530:CDS |
| TAGAAATTCAACTGCATCAA+AGG | 0.493023 | 6_3:+42638821 | Msa0951530:CDS |
| TTTGGTTGAGTTGTCTAACT+TGG | 0.499458 | 6_3:-42637124 | None:intergenic |
| ACAACTCCTATAAGCATAGC+AGG | 0.500768 | 6_3:-42638507 | None:intergenic |
| TTCCCAAGCAGATGAGAAAA+GGG | 0.504084 | 6_3:+42640218 | Msa0951530:CDS |
| TTTGTTGTTGAACTCCAAAA+GGG | 0.513296 | 6_3:+42640444 | Msa0951530:three_prime_UTR |
| GCAGTGACTATAATAGTTGA+AGG | 0.517685 | 6_3:-42640390 | None:intergenic |
| TGGTATTGATAATGGACTAA+AGG | 0.517735 | 6_3:+42637889 | Msa0951530:five_prime_UTR |
| CAGCTGATCCCAATAGTGAC+AGG | 0.519036 | 6_3:-42640281 | None:intergenic |
| TGACTTGGCATCTCAAACAA+AGG | 0.524594 | 6_3:+42638857 | Msa0951530:CDS |
| TTTCGTAGATTATGAACTTG+AGG | 0.530794 | 6_3:-42638735 | None:intergenic |
| TTGGAAAAGTAAAGGAGCAA+AGG | 0.533404 | 6_3:+42638230 | Msa0951530:CDS |
| TTGGGAAATTGCAGCTGCTG+AGG | 0.534299 | 6_3:-42640202 | None:intergenic |
| GAATAATGAGACATTGTAGC+TGG | 0.539645 | 6_3:-42638648 | None:intergenic |
| AATTCAACTGCATCAAAGGA+AGG | 0.540567 | 6_3:+42638825 | Msa0951530:CDS |
| ATCAACTCCCATAAAGCACT+TGG | 0.541024 | 6_3:-42639301 | None:intergenic |
| TTTGATCACTTCGGAAGGAA+AGG | 0.548122 | 6_3:+42638938 | Msa0951530:CDS |
| TTCTTGATTTCAAAGATGCT+AGG | 0.551545 | 6_3:+42639096 | Msa0951530:CDS |
| TACAAACTTGTGGTATAGGA+AGG | 0.560938 | 6_3:+42637081 | Msa0951530:five_prime_UTR |
| TTCTTGGTTTAAATATGTCG+TGG | 0.568745 | 6_3:+42639042 | Msa0951530:CDS |
| TATTGATAATGGACTAAAGG+TGG | 0.569158 | 6_3:+42637892 | Msa0951530:five_prime_UTR |
| GCAGATATGTTCAAATACAT+AGG | 0.569867 | 6_3:+42638195 | Msa0951530:CDS |
| GGAAGGGACTAATAATGACT+TGG | 0.586286 | 6_3:+42638842 | Msa0951530:CDS |
| AATTTCGGCTGCATTAGCGT+TGG | 0.589682 | 6_3:+42639070 | Msa0951530:CDS |
| TGCTAGGCCAAGTTTAGAGA+AGG | 0.593210 | 6_3:+42639112 | Msa0951530:CDS |
| CTTGCTTCAAGTGCTAACAT+TGG | 0.596827 | 6_3:+42638393 | Msa0951530:CDS |
| TTAGTCCATTATCAATACCA+TGG | 0.600106 | 6_3:-42637886 | None:intergenic |
| GAAATTGATAGGTTTCATGT+TGG | 0.608915 | 6_3:+42638780 | Msa0951530:CDS |
| AATATTCAGAGTTATTACTC+CGG | 0.627366 | 6_3:+42638092 | Msa0951530:CDS |
| ATCTGTTCATAAAGATATCG+AGG | 0.627397 | 6_3:+42638572 | Msa0951530:CDS |
| ATTCAACTGCATCAAAGGAA+GGG | 0.631032 | 6_3:+42638826 | Msa0951530:CDS |
| GTTACCAATTGGCGTAGCCG+AGG | 0.632022 | 6_3:-42638418 | None:intergenic |
| CAGTGACTATAATAGTTGAA+GGG | 0.641516 | 6_3:-42640389 | None:intergenic |
| TAATATCCAGAAAATTGCAA+AGG | 0.641731 | 6_3:-42637995 | None:intergenic |
| AGATATCGAGGATCCTATTG+CGG | 0.653537 | 6_3:+42638584 | Msa0951530:CDS |
| AAGCAGATGAGAAAAGGGCA+TGG | 0.654337 | 6_3:+42640223 | Msa0951530:CDS |
| CTTGGCATCTCAAACAAAGG+AGG | 0.666280 | 6_3:+42638860 | Msa0951530:CDS |
| CTGAGTGGAAGCGTAGACTG+TGG | 0.666710 | 6_3:+42638973 | Msa0951530:CDS |
| AGGACTGTTTAAGCGCTGAG+TGG | 0.679075 | 6_3:+42638958 | Msa0951530:CDS |
| CTTGGGTCAGCACTATAGCA+GGG | 0.686858 | 6_3:+42640256 | Msa0951530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTTTTATTTCAATTTTA+TGG | - | chr6_3:42637280-42637299 | None:intergenic | 10.0% |
| !!! | TTTACTATATATTTGTTATT+TGG | + | chr6_3:42639794-42639813 | Msa0951530:intron | 10.0% |
| !!! | TGAAAAGAAAAATCTATTTT+TGG | - | chr6_3:42637145-42637164 | None:intergenic | 15.0% |
| !!! | AAAATAGATTTTTCTTTTCA+AGG | + | chr6_3:42637145-42637164 | Msa0951530:five_prime_UTR | 15.0% |
| !!! | ATTTTATGGTATAGTAAATT+TGG | - | chr6_3:42637266-42637285 | None:intergenic | 15.0% |
| !!! | AAAGTTTAGATTTTTTTTCA+TGG | + | chr6_3:42637801-42637820 | Msa0951530:intron | 15.0% |
| !!! | GATTTGTAAATTCTTTTTTT+TGG | + | chr6_3:42639574-42639593 | Msa0951530:intron | 15.0% |
| !!! | TTTTAACTCTAAAATTTACA+AGG | - | chr6_3:42640087-42640106 | None:intergenic | 15.0% |
| !!! | AACATTTTGTTTAAGGAAAA+TGG | - | chr6_3:42637209-42637228 | None:intergenic | 20.0% |
| !!! | TCATCTTAACATTTTGTTTA+AGG | - | chr6_3:42637216-42637235 | None:intergenic | 20.0% |
| !!! | ATCTAACTATTTTCTATTTC+TGG | + | chr6_3:42637389-42637408 | Msa0951530:intron | 20.0% |
| !!! | GAGTTTTTGATCTTTTATTT+GGG | + | chr6_3:42637914-42637933 | Msa0951530:five_prime_UTR | 20.0% |
| !!! | TGCAATTTTCAATATGAATT+CGG | - | chr6_3:42638334-42638353 | None:intergenic | 20.0% |
| !! | TGTGTTTATATGATTACATT+AGG | + | chr6_3:42639002-42639021 | Msa0951530:CDS | 20.0% |
| !! | ACTATAATACTATAAACACT+TGG | + | chr6_3:42639136-42639155 | Msa0951530:intron | 20.0% |
| !!! | TGTAAATTCTTTTTTTTGGT+AGG | + | chr6_3:42639578-42639597 | Msa0951530:intron | 20.0% |
| !!! | TTGAGCAATGATTATAATTT+TGG | - | chr6_3:42640046-42640065 | None:intergenic | 20.0% |
| !! | TTCTTGATATACAAGTTAAA+TGG | + | chr6_3:42640503-42640522 | Msa0951530:three_prime_UTR | 20.0% |
| ! | ATGACAAAAATACAAACTTG+TGG | + | chr6_3:42637071-42637090 | Msa0951530:five_prime_UTR | 25.0% |
| ! | AAAATACAAACTTGTGGTAT+AGG | + | chr6_3:42637077-42637096 | Msa0951530:five_prime_UTR | 25.0% |
| !!! | ATTTTTCTTTTCAAGGTTTG+TGG | + | chr6_3:42637152-42637171 | Msa0951530:intron | 25.0% |
| ! | TGGTATAGTAAATTTGGTTA+TGG | - | chr6_3:42637260-42637279 | None:intergenic | 25.0% |
| !!! | TATTTCTGGTTTTTGTGAAA+TGG | + | chr6_3:42637403-42637422 | Msa0951530:intron | 25.0% |
| ! | GAGAATAGATATGTTTAAGA+TGG | - | chr6_3:42637537-42637556 | None:intergenic | 25.0% |
| !!! | TGTAGCTTTAACTAAAATCA+CGG | + | chr6_3:42637741-42637760 | Msa0951530:intron | 25.0% |
| ! | TACCAAAGTAAAAAATTCCA+TGG | + | chr6_3:42637869-42637888 | Msa0951530:five_prime_UTR | 25.0% |
| !!! | TACCATGGAATTTTTTACTT+TGG | - | chr6_3:42637874-42637893 | None:intergenic | 25.0% |
| !!! | AAATTCCATGGTATTGATAA+TGG | + | chr6_3:42637881-42637900 | Msa0951530:five_prime_UTR | 25.0% |
| !! | GGAGTTTTTGATCTTTTATT+TGG | + | chr6_3:42637913-42637932 | Msa0951530:five_prime_UTR | 25.0% |
| !! | ATTGAACCTAAAACAACTTT+TGG | - | chr6_3:42637973-42637992 | None:intergenic | 25.0% |
| ! | TAATATCCAGAAAATTGCAA+AGG | - | chr6_3:42637998-42638017 | None:intergenic | 25.0% |
| ! | AATATTCAGAGTTATTACTC+CGG | + | chr6_3:42638092-42638111 | Msa0951530:CDS | 25.0% |
| ! | ACATAGGAAAATTACTTTCT+TGG | + | chr6_3:42638211-42638230 | Msa0951530:CDS | 25.0% |
| ! | TTACTTTCTTGGAAAAGTAA+AGG | + | chr6_3:42638222-42638241 | Msa0951530:CDS | 25.0% |
| !! | TTGTAGAATCTGTTTGATTT+CGG | + | chr6_3:42638260-42638279 | Msa0951530:CDS | 25.0% |
| ! | TGATTCTTATAGCTATGTAT+TGG | + | chr6_3:42638541-42638560 | Msa0951530:CDS | 25.0% |
| !!! | TCACTTTTGATATTCTTTTG+TGG | + | chr6_3:42639238-42639257 | Msa0951530:CDS | 25.0% |
| ! | TATACTTGTCCTATCAAATT+TGG | + | chr6_3:42639378-42639397 | Msa0951530:CDS | 25.0% |
| ! | GTCATTAATCTCCAATTTAA+AGG | + | chr6_3:42639602-42639621 | Msa0951530:intron | 25.0% |
| ! | ATTAATCTCCAATTTAAAGG+AGG | + | chr6_3:42639605-42639624 | Msa0951530:intron | 25.0% |
| ! | ATTTGATTCCTCCTTTAAAT+TGG | - | chr6_3:42639616-42639635 | None:intergenic | 25.0% |
| !!! | TTTGTTATTTGGTTCAACTA+TGG | + | chr6_3:42639805-42639824 | Msa0951530:intron | 25.0% |
| ! | AGGTTTAACAATTACTGATA+TGG | - | chr6_3:42639949-42639968 | None:intergenic | 25.0% |
| !!! | ACTCTAAAATTTACAAGGAA+AGG | - | chr6_3:42640082-42640101 | None:intergenic | 25.0% |
| ! | CAAAAATGTAAACACAAGAT+TGG | - | chr6_3:42640152-42640171 | None:intergenic | 25.0% |
| !! | ATTTTTGTAGTACTATTGCT+TGG | + | chr6_3:42640165-42640184 | Msa0951530:intron | 25.0% |
| !! | GAACTTTTTGAAGAAACAAG+TGG | + | chr6_3:42637455-42637474 | Msa0951530:intron | 30.0% |
| CCTGAACAAGGAAAAAAAAT+TGG | - | chr6_3:42637838-42637857 | None:intergenic | 30.0% | |
| !!! | CCAATTTTTTTTCCTTGTTC+AGG | + | chr6_3:42637835-42637854 | Msa0951530:intron | 30.0% |
| TTAGTCCATTATCAATACCA+TGG | - | chr6_3:42637889-42637908 | None:intergenic | 30.0% | |
| !! | TGGTATTGATAATGGACTAA+AGG | + | chr6_3:42637889-42637908 | Msa0951530:five_prime_UTR | 30.0% |
| !! | TATTGATAATGGACTAAAGG+TGG | + | chr6_3:42637892-42637911 | Msa0951530:five_prime_UTR | 30.0% |
| !! | TGGGTGTTGAATCAAAAAAA+TGG | + | chr6_3:42637933-42637952 | Msa0951530:exon | 30.0% |
| !!! | CCTAAAACAACTTTTGGAAT+TGG | - | chr6_3:42637967-42637986 | None:intergenic | 30.0% |
| !! | CCAATTCCAAAAGTTGTTTT+AGG | + | chr6_3:42637964-42637983 | Msa0951530:CDS | 30.0% |
| GCAGATATGTTCAAATACAT+AGG | + | chr6_3:42638195-42638214 | Msa0951530:CDS | 30.0% | |
| GTCGAGAGTAAAATTTCATT+CGG | + | chr6_3:42638462-42638481 | Msa0951530:CDS | 30.0% | |
| ATCTGTTCATAAAGATATCG+AGG | + | chr6_3:42638572-42638591 | Msa0951530:CDS | 30.0% | |
| CTTAATTCTCAAGAGTTGAA+TGG | + | chr6_3:42638678-42638697 | Msa0951530:CDS | 30.0% | |
| TTTCGTAGATTATGAACTTG+AGG | - | chr6_3:42638738-42638757 | None:intergenic | 30.0% | |
| GAAATTGATAGGTTTCATGT+TGG | + | chr6_3:42638780-42638799 | Msa0951530:CDS | 30.0% | |
| TAGAAATTCAACTGCATCAA+AGG | + | chr6_3:42638821-42638840 | Msa0951530:CDS | 30.0% | |
| TTCTTGGTTTAAATATGTCG+TGG | + | chr6_3:42639042-42639061 | Msa0951530:CDS | 30.0% | |
| TTCTTGATTTCAAAGATGCT+AGG | + | chr6_3:42639096-42639115 | Msa0951530:CDS | 30.0% | |
| TATAGTACCTTCTCTAAACT+TGG | - | chr6_3:42639122-42639141 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTCTTGTTGATAC+AGG | + | chr6_3:42639207-42639226 | Msa0951530:intron | 30.0% |
| ! | CATTTGAAGCCAAATTTGAT+AGG | - | chr6_3:42639390-42639409 | None:intergenic | 30.0% |
| ! | TGTGGTTACTCAATTGTTTT+AGG | + | chr6_3:42639444-42639463 | Msa0951530:intron | 30.0% |
| CTTCGGTTTCTAAATTGTAA+GGG | - | chr6_3:42639492-42639511 | None:intergenic | 30.0% | |
| TCTTCGGTTTCTAAATTGTA+AGG | - | chr6_3:42639493-42639512 | None:intergenic | 30.0% | |
| ACATAAAATCATATGACGTG+TGG | - | chr6_3:42639520-42639539 | None:intergenic | 30.0% | |
| TTCACAACACTAACATAACA+TGG | - | chr6_3:42639647-42639666 | None:intergenic | 30.0% | |
| TTGAAATCGAACATTTGAAG+TGG | - | chr6_3:42639995-42640014 | None:intergenic | 30.0% | |
| AAATTTACAAGGAAAGGAAG+AGG | - | chr6_3:42640076-42640095 | None:intergenic | 30.0% | |
| AGAATGTCAATGTGTATGAT+AGG | - | chr6_3:42640347-42640366 | None:intergenic | 30.0% | |
| TATCATACACATTGACATTC+TGG | + | chr6_3:42640346-42640365 | Msa0951530:CDS | 30.0% | |
| !! | TTCTGGAGTCATTTGAAATT+TGG | + | chr6_3:42640363-42640382 | Msa0951530:CDS | 30.0% |
| CAGTGACTATAATAGTTGAA+GGG | - | chr6_3:42640392-42640411 | None:intergenic | 30.0% | |
| ACTATTATAGTCACTGCTAT+TGG | + | chr6_3:42640396-42640415 | Msa0951530:CDS | 30.0% | |
| !! | ATTTGTTGTTGAACTCCAAA+AGG | + | chr6_3:42640443-42640462 | Msa0951530:three_prime_UTR | 30.0% |
| !! | TTTGTTGTTGAACTCCAAAA+GGG | + | chr6_3:42640444-42640463 | Msa0951530:three_prime_UTR | 30.0% |
| TACAAACTTGTGGTATAGGA+AGG | + | chr6_3:42637081-42637100 | Msa0951530:five_prime_UTR | 35.0% | |
| ! | TTTGGTTGAGTTGTCTAACT+TGG | - | chr6_3:42637127-42637146 | None:intergenic | 35.0% |
| !! | CAGTGACATCATGTTTTTGT+TGG | + | chr6_3:42637708-42637727 | Msa0951530:intron | 35.0% |
| TCATTGCTTTGTCAGAATGA+CGG | - | chr6_3:42637774-42637793 | None:intergenic | 35.0% | |
| AGAATGAAATCTCCTGAACA+AGG | - | chr6_3:42637850-42637869 | None:intergenic | 35.0% | |
| ! | CAATAGCCTTTGCAATTTTC+TGG | + | chr6_3:42637989-42638008 | Msa0951530:CDS | 35.0% |
| GTTCTACCAATTGGTAGAAA+TGG | - | chr6_3:42638039-42638058 | None:intergenic | 35.0% | |
| !! | TCTTTTAGGTGCAATGCTTA+TGG | + | chr6_3:42638068-42638087 | Msa0951530:CDS | 35.0% |
| TTGGAAAAGTAAAGGAGCAA+AGG | + | chr6_3:42638230-42638249 | Msa0951530:CDS | 35.0% | |
| AAGCAAGTGCAAGCAAAAAA+GGG | - | chr6_3:42638380-42638399 | None:intergenic | 35.0% | |
| !! | AGATTTTGAGGGTTACCAAT+TGG | - | chr6_3:42638432-42638451 | None:intergenic | 35.0% |
| ! | CAGCGATAACAAGATTTTGA+GGG | - | chr6_3:42638443-42638462 | None:intergenic | 35.0% |
| ! | ACAGCGATAACAAGATTTTG+AGG | - | chr6_3:42638444-42638463 | None:intergenic | 35.0% |
| ! | TCATTCGGAGAGTTTTTGTT+TGG | + | chr6_3:42638477-42638496 | Msa0951530:CDS | 35.0% |
| ATTGTTCCTGCTATGCTTAT+AGG | + | chr6_3:42638501-42638520 | Msa0951530:CDS | 35.0% | |
| GAATAATGAGACATTGTAGC+TGG | - | chr6_3:42638651-42638670 | None:intergenic | 35.0% | |
| !!! | AGGAGAGTTTTGAATACTAG+AGG | - | chr6_3:42638718-42638737 | None:intergenic | 35.0% |
| AATTCAACTGCATCAAAGGA+AGG | + | chr6_3:42638825-42638844 | Msa0951530:CDS | 35.0% | |
| ATTCAACTGCATCAAAGGAA+GGG | + | chr6_3:42638826-42638845 | Msa0951530:CDS | 35.0% | |
| !!! | AGCACATGTTTTGATCACTT+CGG | + | chr6_3:42638929-42638948 | Msa0951530:CDS | 35.0% |
| ! | ATGTTGATTGCAATGCTTCT+TGG | + | chr6_3:42639026-42639045 | Msa0951530:CDS | 35.0% |
| GGAATGTTTATCACAGTAGA+TGG | + | chr6_3:42639259-42639278 | Msa0951530:CDS | 35.0% | |
| ! | GTAGATGGATTCAACAAAAC+TGG | + | chr6_3:42639274-42639293 | Msa0951530:CDS | 35.0% |
| TGGAATTCCAAGTGCTTTAT+GGG | + | chr6_3:42639294-42639313 | Msa0951530:CDS | 35.0% | |
| ATAATCATTCACTTACCGGT+TGG | - | chr6_3:42639415-42639434 | None:intergenic | 35.0% | |
| CCTGATAATCATTCACTTAC+CGG | - | chr6_3:42639419-42639438 | None:intergenic | 35.0% | |
| AATGATTATCAGGTTCTCTG+TGG | + | chr6_3:42639426-42639445 | Msa0951530:intron | 35.0% | |
| GGTTTCTAAATTGTAAGGGT+AGG | - | chr6_3:42639488-42639507 | None:intergenic | 35.0% | |
| !! | TTGAATGCATCAACTTGTTG+TGG | + | chr6_3:42639542-42639561 | Msa0951530:intron | 35.0% |
| GAACCAATTGAACCATGATT+CGG | + | chr6_3:42639838-42639857 | Msa0951530:intron | 35.0% | |
| GACAATTCAGATCGAAAAGA+TGG | - | chr6_3:42640124-42640143 | None:intergenic | 35.0% | |
| GTCAATGTGTATGATAGGTT+TGG | - | chr6_3:42640342-42640361 | None:intergenic | 35.0% | |
| GCAGTGACTATAATAGTTGA+AGG | - | chr6_3:42640393-42640412 | None:intergenic | 35.0% | |
| ! | TTTCTACAACAGAACCCTTT+TGG | - | chr6_3:42640461-42640480 | None:intergenic | 35.0% |
| ATTGGTAGAAATGGAACTGC+TGG | - | chr6_3:42638030-42638049 | None:intergenic | 40.0% | |
| GCAGTTCCATTTCTACCAAT+TGG | + | chr6_3:42638030-42638049 | Msa0951530:CDS | 40.0% | |
| ! | AGAACAGCAGGATCTCTTTT+AGG | + | chr6_3:42638054-42638073 | Msa0951530:CDS | 40.0% |
| GCAATCGATCTTCCAATTCT+CGG | + | chr6_3:42638129-42638148 | Msa0951530:CDS | 40.0% | |
| ! | CCAATTCTCGGTCTTCTTTT+CGG | + | chr6_3:42638141-42638160 | Msa0951530:CDS | 40.0% |
| GAAGCAAGTGCAAGCAAAAA+AGG | - | chr6_3:42638381-42638400 | None:intergenic | 40.0% | |
| CTTGCTTCAAGTGCTAACAT+TGG | + | chr6_3:42638393-42638412 | Msa0951530:CDS | 40.0% | |
| !! | AAGTGCTAACATTGGTTCCT+CGG | + | chr6_3:42638401-42638420 | Msa0951530:CDS | 40.0% |
| ACAACTCCTATAAGCATAGC+AGG | - | chr6_3:42638510-42638529 | None:intergenic | 40.0% | |
| AGATATCGAGGATCCTATTG+CGG | + | chr6_3:42638584-42638603 | Msa0951530:CDS | 40.0% | |
| CGCTATCACTCGAAATCATT+CGG | - | chr6_3:42638761-42638780 | None:intergenic | 40.0% | |
| ! | CGAGTGATAGCGAAATTGAT+AGG | + | chr6_3:42638769-42638788 | Msa0951530:CDS | 40.0% |
| GGAAGGGACTAATAATGACT+TGG | + | chr6_3:42638842-42638861 | Msa0951530:CDS | 40.0% | |
| ! | TGACTTGGCATCTCAAACAA+AGG | + | chr6_3:42638857-42638876 | Msa0951530:CDS | 40.0% |
| ! | ACTTCGACAACAGTTTTCGA+CGG | - | chr6_3:42638894-42638913 | None:intergenic | 40.0% |
| !!! | CATGTTTTGATCACTTCGGA+AGG | + | chr6_3:42638933-42638952 | Msa0951530:CDS | 40.0% |
| TTTGATCACTTCGGAAGGAA+AGG | + | chr6_3:42638938-42638957 | Msa0951530:CDS | 40.0% | |
| ! | TATGTCGTGGACTGCAATTT+CGG | + | chr6_3:42639055-42639074 | Msa0951530:CDS | 40.0% |
| CTGGAATTCCAAGTGCTTTA+TGG | + | chr6_3:42639293-42639312 | Msa0951530:CDS | 40.0% | |
| ! | ATCAACTCCCATAAAGCACT+TGG | - | chr6_3:42639304-42639323 | None:intergenic | 40.0% |
| AAGTGCTTTATGGGAGTTGA+TGG | + | chr6_3:42639303-42639322 | Msa0951530:CDS | 40.0% | |
| TTGGCTTCAAATGTACCAAC+CGG | + | chr6_3:42639397-42639416 | Msa0951530:CDS | 40.0% | |
| CCGGTAAGTGAATGATTATC+AGG | + | chr6_3:42639416-42639435 | Msa0951530:intron | 40.0% | |
| !! | ATGCATCAACTTGTTGTGGT+AGG | + | chr6_3:42639546-42639565 | Msa0951530:intron | 40.0% |
| TAGTGTTGTGAAATAGAGCC+TGG | + | chr6_3:42639655-42639674 | Msa0951530:intron | 40.0% | |
| TGTCCAGTTCAACCGAAAAT+TGG | + | chr6_3:42639679-42639698 | Msa0951530:intron | 40.0% | |
| CTGTAAACTACGGTTCTGTT+TGG | - | chr6_3:42639753-42639772 | None:intergenic | 40.0% | |
| AACAGAACCGTAGTTTACAG+TGG | + | chr6_3:42639753-42639772 | Msa0951530:intron | 40.0% | |
| GAACCAACCACTGTAAACTA+CGG | - | chr6_3:42639763-42639782 | None:intergenic | 40.0% | |
| CTTCCGAATCATGGTTCAAT+TGG | - | chr6_3:42639844-42639863 | None:intergenic | 40.0% | |
| TGAACCAGAAGTCGAAGAAA+TGG | - | chr6_3:42639889-42639908 | None:intergenic | 40.0% | |
| ACAGAAATGATCAGCAGTGA+AGG | - | chr6_3:42639969-42639988 | None:intergenic | 40.0% | |
| TTTCCCAAGCAGATGAGAAA+AGG | + | chr6_3:42640217-42640236 | Msa0951530:CDS | 40.0% | |
| TTCCCAAGCAGATGAGAAAA+GGG | + | chr6_3:42640218-42640237 | Msa0951530:CDS | 40.0% | |
| CTACCAATTGGTAGAACAGC+AGG | + | chr6_3:42638042-42638061 | Msa0951530:CDS | 45.0% | |
| GATCCTGCTGTTCTACCAAT+TGG | - | chr6_3:42638048-42638067 | None:intergenic | 45.0% | |
| CCGAAAAGAAGACCGAGAAT+TGG | - | chr6_3:42638144-42638163 | None:intergenic | 45.0% | |
| AGTGCAAGCAAAAAAGGGTG+AGG | - | chr6_3:42638375-42638394 | None:intergenic | 45.0% | |
| CTTGGCATCTCAAACAAAGG+AGG | + | chr6_3:42638860-42638879 | Msa0951530:CDS | 45.0% | |
| AATTTCGGCTGCATTAGCGT+TGG | + | chr6_3:42639070-42639089 | Msa0951530:CDS | 45.0% | |
| TGCTAGGCCAAGTTTAGAGA+AGG | + | chr6_3:42639112-42639131 | Msa0951530:CDS | 45.0% | |
| GAACGATCAACTCGCGAATA+AGG | - | chr6_3:42639331-42639350 | None:intergenic | 45.0% | |
| TTGTAAGGGTAGGAGAGACA+AGG | - | chr6_3:42639478-42639497 | None:intergenic | 45.0% | |
| TATGACGTGTGGATCGTCTT+CGG | - | chr6_3:42639509-42639528 | None:intergenic | 45.0% | |
| ! | TGGCCAATTTTCGGTTGAAC+TGG | - | chr6_3:42639685-42639704 | None:intergenic | 45.0% |
| ! | GTTGAACCAAGGTTGGTTCA+CGG | + | chr6_3:42639717-42639736 | Msa0951530:intron | 45.0% |
| !! | ACGGTTCTGTTTGGCTCTAA+AGG | - | chr6_3:42639744-42639763 | None:intergenic | 45.0% |
| GAACCGTAGTTTACAGTGGT+TGG | + | chr6_3:42639757-42639776 | Msa0951530:intron | 45.0% | |
| AAATGGACCAGAGGTCAAAC+CGG | - | chr6_3:42639872-42639891 | None:intergenic | 45.0% | |
| AAGTCGAAGAAATGGACCAG+AGG | - | chr6_3:42639881-42639900 | None:intergenic | 45.0% | |
| TGGTCCATTTCTTCGACTTC+TGG | + | chr6_3:42639882-42639901 | Msa0951530:intron | 45.0% | |
| !! | TTCGACTTCTGGTTCAACGT+TGG | + | chr6_3:42639893-42639912 | Msa0951530:intron | 45.0% |
| !! | CTTCTGGTTCAACGTTGGTT+TGG | + | chr6_3:42639898-42639917 | Msa0951530:intron | 45.0% |
| ! | TGCCCTTTTCTCATCTGCTT+GGG | - | chr6_3:42640223-42640242 | None:intergenic | 45.0% |
| ! | ATGCCCTTTTCTCATCTGCT+TGG | - | chr6_3:42640224-42640243 | None:intergenic | 45.0% |
| AAGCAGATGAGAAAAGGGCA+TGG | + | chr6_3:42640223-42640242 | Msa0951530:CDS | 45.0% | |
| ! | GAAAAGGGCATGGCTCATAT+TGG | + | chr6_3:42640233-42640252 | Msa0951530:CDS | 45.0% |
| !! | AAATATATAGTAAAAAAAAA+CGG | - | chr6_3:42639788-42639807 | None:intergenic | 5.0% |
| ATTGCAGCGTACGCTTCTTC+CGG | - | chr6_3:42638114-42638133 | None:intergenic | 50.0% | |
| ! | CGGTCTTCTTTTCGGCACAA+TGG | + | chr6_3:42638149-42638168 | Msa0951530:CDS | 50.0% |
| GCAAGCAAAAAAGGGTGAGG+TGG | - | chr6_3:42638372-42638391 | None:intergenic | 50.0% | |
| TCAGCTGCAACTTCCGCAAT+AGG | - | chr6_3:42638600-42638619 | None:intergenic | 50.0% | |
| !! | AGGACTGTTTAAGCGCTGAG+TGG | + | chr6_3:42638958-42638977 | Msa0951530:CDS | 50.0% |
| !! | TCGCGAGTTGATCGTTCTAG+TGG | + | chr6_3:42639334-42639353 | Msa0951530:CDS | 50.0% |
| CAACCGAAAATTGGCCAGTC+TGG | + | chr6_3:42639688-42639707 | Msa0951530:intron | 50.0% | |
| !! | CCACCAGACTGGCCAATTTT+CGG | - | chr6_3:42639694-42639713 | None:intergenic | 50.0% |
| CGAAAATTGGCCAGTCTGGT+GGG | + | chr6_3:42639692-42639711 | Msa0951530:intron | 50.0% | |
| AAAGGACCGTGAACCAACCT+TGG | - | chr6_3:42639726-42639745 | None:intergenic | 50.0% | |
| ! | CCATGATTCGGAAGTCTCAC+CGG | + | chr6_3:42639850-42639869 | Msa0951530:intron | 50.0% |
| TTGGGAAATTGCAGCTGCTG+AGG | - | chr6_3:42640205-42640224 | None:intergenic | 50.0% | |
| !! | GGCATGGCTCATATTGGCTT+GGG | + | chr6_3:42640239-42640258 | Msa0951530:CDS | 50.0% |
| CTTGGGTCAGCACTATAGCA+GGG | + | chr6_3:42640256-42640275 | Msa0951530:CDS | 50.0% | |
| AGCAGGGAACCTGTCACTAT+TGG | + | chr6_3:42640272-42640291 | Msa0951530:CDS | 50.0% | |
| GCAGGGAACCTGTCACTATT+GGG | + | chr6_3:42640273-42640292 | Msa0951530:CDS | 50.0% | |
| CAGCTGATCCCAATAGTGAC+AGG | - | chr6_3:42640284-42640303 | None:intergenic | 50.0% | |
| GTTACCAATTGGCGTAGCCG+AGG | - | chr6_3:42638421-42638440 | None:intergenic | 55.0% | |
| ! | CTGAGTGGAAGCGTAGACTG+TGG | + | chr6_3:42638973-42638992 | Msa0951530:CDS | 55.0% |
| TTCGGTTGAACTGGACAGCC+AGG | - | chr6_3:42639676-42639695 | None:intergenic | 55.0% | |
| CCGAAAATTGGCCAGTCTGG+TGG | + | chr6_3:42639691-42639710 | Msa0951530:intron | 55.0% | |
| AAATTGGCCAGTCTGGTGGG+TGG | + | chr6_3:42639695-42639714 | Msa0951530:intron | 55.0% | |
| ! | TCTGGTGGGTGGTTGAACCA+AGG | + | chr6_3:42639706-42639725 | Msa0951530:intron | 55.0% |
| GTGGGTGGTTGAACCAAGGT+TGG | + | chr6_3:42639710-42639729 | Msa0951530:intron | 55.0% | |
| CCGGTGAGACTTCCGAATCA+TGG | - | chr6_3:42639853-42639872 | None:intergenic | 55.0% | |
| !! | AGTCTCACCGGTTTGACCTC+TGG | + | chr6_3:42639862-42639881 | Msa0951530:intron | 55.0% |
| ! | GGGCATGGCTCATATTGGCT+TGG | + | chr6_3:42640238-42640257 | Msa0951530:CDS | 55.0% |
| GCTTGGGTCAGCACTATAGC+AGG | + | chr6_3:42640255-42640274 | Msa0951530:CDS | 55.0% | |
| GGTTCCTCGGCTACGCCAAT+TGG | + | chr6_3:42638414-42638433 | Msa0951530:CDS | 60.0% | |
| GGTTCAACCACCCACCAGAC+TGG | - | chr6_3:42639705-42639724 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 42637042 | 42640604 | 42637042 | ID=Msa0951530;Name=Msa0951530 |
| chr6_3 | mRNA | 42637042 | 42640604 | 42637042 | ID=Msa0951530-mRNA-1;Parent=Msa0951530;Name=Msa0951530-mRNA-1;_AED=0.23;_eAED=0.23;_QI=220|1|1|1|0.66|0.5|4|167|544 |
| chr6_3 | exon | 42637042 | 42637166 | 42637042 | ID=Msa0951530-mRNA-1:exon:9936;Parent=Msa0951530-mRNA-1 |
| chr6_3 | exon | 42637857 | 42639133 | 42637857 | ID=Msa0951530-mRNA-1:exon:9937;Parent=Msa0951530-mRNA-1 |
| chr6_3 | exon | 42639229 | 42639418 | 42639229 | ID=Msa0951530-mRNA-1:exon:9938;Parent=Msa0951530-mRNA-1 |
| chr6_3 | exon | 42640175 | 42640604 | 42640175 | ID=Msa0951530-mRNA-1:exon:9939;Parent=Msa0951530-mRNA-1 |
| chr6_3 | five_prime_UTR | 42637042 | 42637166 | 42637042 | ID=Msa0951530-mRNA-1:five_prime_utr;Parent=Msa0951530-mRNA-1 |
| chr6_3 | five_prime_UTR | 42637857 | 42637951 | 42637857 | ID=Msa0951530-mRNA-1:five_prime_utr;Parent=Msa0951530-mRNA-1 |
| chr6_3 | CDS | 42637952 | 42639133 | 42637952 | ID=Msa0951530-mRNA-1:cds;Parent=Msa0951530-mRNA-1 |
| chr6_3 | CDS | 42639229 | 42639418 | 42639229 | ID=Msa0951530-mRNA-1:cds;Parent=Msa0951530-mRNA-1 |
| chr6_3 | CDS | 42640175 | 42640437 | 42640175 | ID=Msa0951530-mRNA-1:cds;Parent=Msa0951530-mRNA-1 |
| chr6_3 | three_prime_UTR | 42640438 | 42640604 | 42640438 | ID=Msa0951530-mRNA-1:three_prime_utr;Parent=Msa0951530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
