Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953220 | XP_013452356.1 | 98.014 | 705 | 9 | 1 | 1 | 705 | 1 | 700 | 0.0 | 1422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953220 | sp|Q93ZQ5|SPXM3_ARATH | 77.119 | 708 | 150 | 4 | 1 | 705 | 1 | 699 | 0.0 | 1126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0888680 | Msa0953220 | 0.820621 | 6.228000e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953220 | MtrunA17_Chr6g0470311 | 98.014 | 705 | 9 | 1 | 1 | 705 | 1 | 700 | 0.0 | 1422 |
| Msa0953220 | MtrunA17_Chr1g0202441 | 82.837 | 705 | 107 | 2 | 1 | 705 | 1 | 691 | 0.0 | 1186 |
| Msa0953220 | MtrunA17_Chr7g0246901 | 67.602 | 713 | 209 | 5 | 1 | 705 | 1 | 699 | 0.0 | 982 |
| Msa0953220 | MtrunA17_Chr7g0253691 | 59.231 | 130 | 51 | 2 | 223 | 350 | 1 | 130 | 2.78e-47 | 163 |
| Msa0953220 | MtrunA17_Chr7g0253831 | 54.237 | 59 | 27 | 0 | 220 | 278 | 20 | 78 | 2.42e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953220 | AT4G22990.3 | 77.119 | 708 | 151 | 4 | 1 | 705 | 1 | 700 | 0.0 | 1126 |
| Msa0953220 | AT4G22990.2 | 77.119 | 708 | 151 | 4 | 1 | 705 | 1 | 700 | 0.0 | 1126 |
| Msa0953220 | AT4G22990.1 | 77.119 | 708 | 150 | 4 | 1 | 705 | 1 | 699 | 0.0 | 1126 |
| Msa0953220 | AT4G11810.2 | 76.197 | 710 | 154 | 4 | 1 | 705 | 1 | 700 | 0.0 | 1118 |
| Msa0953220 | AT4G11810.3 | 76.197 | 710 | 154 | 4 | 1 | 705 | 1 | 700 | 0.0 | 1118 |
| Msa0953220 | AT4G11810.1 | 76.124 | 712 | 158 | 5 | 1 | 705 | 1 | 707 | 0.0 | 1115 |
| Msa0953220 | AT1G63010.6 | 74.294 | 708 | 170 | 3 | 1 | 705 | 1 | 699 | 0.0 | 1068 |
| Msa0953220 | AT1G63010.1 | 74.294 | 708 | 170 | 3 | 1 | 705 | 1 | 699 | 0.0 | 1068 |
| Msa0953220 | AT1G63010.3 | 74.294 | 708 | 170 | 3 | 1 | 705 | 1 | 699 | 0.0 | 1068 |
| Msa0953220 | AT1G63010.4 | 74.294 | 708 | 170 | 3 | 1 | 705 | 1 | 699 | 0.0 | 1068 |
| Msa0953220 | AT1G63010.7 | 74.294 | 708 | 170 | 3 | 1 | 705 | 1 | 699 | 0.0 | 1068 |
| Msa0953220 | AT1G63010.2 | 74.184 | 705 | 174 | 2 | 1 | 705 | 1 | 697 | 0.0 | 1065 |
| Msa0953220 | AT1G63010.5 | 73.361 | 717 | 170 | 4 | 1 | 705 | 1 | 708 | 0.0 | 1059 |
Find 176 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTTGCAGATTCATATTT+TGG | 0.153863 | 6_3:+49155624 | Msa0953220:five_prime_UTR |
| CGGTTTGTGGTATTGTTATT+GGG | 0.208164 | 6_3:+49158058 | Msa0953220:CDS |
| CTCACGAATGTTGGATAATC+AGG | 0.234778 | 6_3:+49156586 | Msa0953220:CDS |
| GAACTAAGAGTTAAGGTATT+TGG | 0.253596 | 6_3:+49161229 | Msa0953220:three_prime_UTR |
| GGTTGTTTCAATGTGAATTT+TGG | 0.266302 | 6_3:+49161013 | Msa0953220:three_prime_UTR |
| ACGGTTTGTGGTATTGTTAT+TGG | 0.273974 | 6_3:+49158057 | Msa0953220:CDS |
| TCAGCCTGCTCTTCCTCTTC+AGG | 0.281826 | 6_3:+49157346 | Msa0953220:CDS |
| TTTCCAACAACAATGTTTAC+AGG | 0.295201 | 6_3:-49159739 | None:intergenic |
| GCTTCACTCTGGCTTTAAAT+TGG | 0.298487 | 6_3:-49155547 | None:intergenic |
| GACAATAGTGCACTAGAAAA+AGG | 0.306808 | 6_3:+49159142 | Msa0953220:CDS |
| ACTTGTTGCAGCTGGGAATA+AGG | 0.310048 | 6_3:-49157092 | None:intergenic |
| CGCCTTCCGGCCAATTCAAT+TGG | 0.315802 | 6_3:+49159259 | Msa0953220:CDS |
| CTTGGCTGGTATATCTAGTA+TGG | 0.316024 | 6_3:+49158832 | Msa0953220:CDS |
| CAGGAAGAGATGGTTGCCTT+TGG | 0.326467 | 6_3:+49156310 | Msa0953220:intron |
| CATATGATGTTAATTCAATA+TGG | 0.328345 | 6_3:+49158205 | Msa0953220:CDS |
| TCTGTTGACATCAGAAATAA+TGG | 0.329091 | 6_3:+49160165 | Msa0953220:CDS |
| TAACCCTAACTATATCAAAA+AGG | 0.337031 | 6_3:-49161123 | None:intergenic |
| ATACCAGCATTTGTCTGATT+TGG | 0.340454 | 6_3:-49158906 | None:intergenic |
| TCATCCGAAGTAATTAATAA+TGG | 0.348554 | 6_3:-49159175 | None:intergenic |
| GTTGGAGCAACAAGGGCTTT+TGG | 0.352854 | 6_3:+49156839 | Msa0953220:CDS |
| TCTTATGGCTCACGAACATT+TGG | 0.352924 | 6_3:+49160963 | Msa0953220:three_prime_UTR |
| AAGGAAGCAAGGTGACATTA+AGG | 0.360449 | 6_3:-49160824 | None:intergenic |
| AGAAATGCATAATGATTTGC+AGG | 0.361991 | 6_3:+49156884 | Msa0953220:CDS |
| TCAGCAGAAGAGACATAAAA+TGG | 0.367401 | 6_3:-49157945 | None:intergenic |
| GTTAAGAAAGTTTGTTGAGT+TGG | 0.378222 | 6_3:-49157845 | None:intergenic |
| GGTTATGGCTATTGCTTGGC+TGG | 0.378347 | 6_3:+49158818 | Msa0953220:CDS |
| TTTAATCAAAATACCTTGCC+AGG | 0.381086 | 6_3:+49158792 | Msa0953220:CDS |
| GTTTCTGCTGAAGTACTAGA+AGG | 0.382654 | 6_3:+49160271 | Msa0953220:CDS |
| GAACATTTGGAAAAGTATCT+AGG | 0.383875 | 6_3:+49160976 | Msa0953220:three_prime_UTR |
| ATAGGATAGAAATCAGTATA+AGG | 0.384183 | 6_3:-49160898 | None:intergenic |
| TCTAGCAATTGTTCCGGCCT+CGG | 0.386955 | 6_3:-49160748 | None:intergenic |
| TCTATAAGATTCTCTTAGTT+CGG | 0.399596 | 6_3:-49156931 | None:intergenic |
| ATTAATTACTTCGGATGATA+AGG | 0.399649 | 6_3:+49159180 | Msa0953220:CDS |
| TACCTTGCCAGGGTGGGTTA+TGG | 0.403519 | 6_3:+49158803 | Msa0953220:CDS |
| ATATGCTCAACAAATTCAAC+AGG | 0.406442 | 6_3:+49156529 | Msa0953220:CDS |
| TGGTATATCTAGTATGGTTA+TGG | 0.409048 | 6_3:+49158838 | Msa0953220:CDS |
| CCTCACTATCATCATAATCT+TGG | 0.413464 | 6_3:-49159219 | None:intergenic |
| GAGCCGCAATACATCTGTTC+GGG | 0.417764 | 6_3:+49160235 | Msa0953220:CDS |
| CTTCCTGTAAACATTGTTGT+TGG | 0.418131 | 6_3:+49159736 | Msa0953220:CDS |
| CTTCAGCAGAAACAAATAGA+AGG | 0.422993 | 6_3:-49160261 | None:intergenic |
| GATGCTACCATTACATTGGC+TGG | 0.424439 | 6_3:+49160780 | Msa0953220:CDS |
| TGGCTTTAAATTGGTCCCTT+CGG | 0.424932 | 6_3:-49155538 | None:intergenic |
| AAGAAGTTTGATAAGCGCTT+TGG | 0.425206 | 6_3:+49157026 | Msa0953220:CDS |
| AGCCAGAGTGAAGCTTTGTA+TGG | 0.427677 | 6_3:+49155556 | Msa0953220:five_prime_UTR |
| AAAGCCCTTGTTGCTCCAAC+AGG | 0.429226 | 6_3:-49156836 | None:intergenic |
| AAATCAGTATAAGGAATTGT+AGG | 0.433519 | 6_3:-49160889 | None:intergenic |
| CAGGCTGATCATAAATTGAT+AGG | 0.439060 | 6_3:-49157331 | None:intergenic |
| CAAGGATTTCTCACGAATGT+TGG | 0.440041 | 6_3:+49156577 | Msa0953220:CDS |
| AGATAAACGCAGCTGTTGAT+AGG | 0.441237 | 6_3:+49157818 | Msa0953220:CDS |
| TTTCATGCTTAAATATGTAA+TGG | 0.441706 | 6_3:+49159615 | Msa0953220:CDS |
| ATTTGGTGTATGATTCTCTT+CGG | 0.441984 | 6_3:-49158889 | None:intergenic |
| CACAATCTAATTTACTAAAG+TGG | 0.442847 | 6_3:-49161311 | None:intergenic |
| TATGTCTCTTCTGCTGAACT+TGG | 0.443700 | 6_3:+49157951 | Msa0953220:CDS |
| TGAGCCGCAATACATCTGTT+CGG | 0.443964 | 6_3:+49160234 | Msa0953220:CDS |
| GTATGCCGATCCAATTGAAT+TGG | 0.445666 | 6_3:-49159269 | None:intergenic |
| CTTGTTGCTCCAACAGGAAA+AGG | 0.445903 | 6_3:-49156830 | None:intergenic |
| GTAGGGGATAGGTGCTGTTG+TGG | 0.446196 | 6_3:+49157259 | Msa0953220:intron |
| AGGAAGAGATGGTTGCCTTT+GGG | 0.447176 | 6_3:+49156311 | Msa0953220:intron |
| GCTTGAACACTTGTTGCAGC+TGG | 0.447669 | 6_3:-49157100 | None:intergenic |
| TAAGGAATTGTAGGTATAGC+AGG | 0.450373 | 6_3:-49160880 | None:intergenic |
| ATCTAGGTTGTTATTTATGT+AGG | 0.457284 | 6_3:+49160992 | Msa0953220:three_prime_UTR |
| GCATGTGGTCCCGCATTAGC+TGG | 0.457631 | 6_3:+49158732 | Msa0953220:CDS |
| AACTCATGAAGAAGCGAGTA+AGG | 0.460371 | 6_3:+49156504 | Msa0953220:CDS |
| GTTCTGCCAGAGCTGTTAAC+CGG | 0.460864 | 6_3:+49158628 | Msa0953220:CDS |
| TACAAAGTGGTTGTTGCAGC+TGG | 0.462240 | 6_3:+49155650 | Msa0953220:five_prime_UTR |
| TCTTTCAATCTGAGCCTCAT+AGG | 0.464290 | 6_3:-49160916 | None:intergenic |
| TTTGTTAGTGCTAGTGCTCT+CGG | 0.464523 | 6_3:+49158705 | Msa0953220:CDS |
| TCCAGAGGAATCTCGCCTTC+CGG | 0.464550 | 6_3:+49159246 | Msa0953220:CDS |
| TCACAACATACTACTTCAAC+TGG | 0.471558 | 6_3:+49159665 | Msa0953220:CDS |
| GCCGGAAGGCGAGATTCCTC+TGG | 0.472849 | 6_3:-49159247 | None:intergenic |
| TAGGGGATAGGTGCTGTTGT+GGG | 0.473773 | 6_3:+49157260 | Msa0953220:intron |
| GGTCGAACAAATCATACTTT+AGG | 0.476488 | 6_3:+49158127 | Msa0953220:CDS |
| ATACTGATTTCTATCCTATG+AGG | 0.479606 | 6_3:+49160902 | Msa0953220:exon |
| ATAACGCCGGTTAACAGCTC+TGG | 0.481572 | 6_3:-49158634 | None:intergenic |
| ACAACCATTATTAATTACTT+CGG | 0.483175 | 6_3:+49159171 | Msa0953220:CDS |
| CTACATAAGCAACATGTTTG+AGG | 0.484283 | 6_3:+49159762 | Msa0953220:CDS |
| ACTCCTTACACCTTCTGTAA+AGG | 0.487803 | 6_3:+49159294 | Msa0953220:CDS |
| GGTGGGTTATGGCTATTGCT+TGG | 0.489436 | 6_3:+49158814 | Msa0953220:CDS |
| CTCGTGAAGATTGCGAGATA+AGG | 0.493114 | 6_3:-49157285 | None:intergenic |
| AATTACTCTAGCAATTGTTC+CGG | 0.495156 | 6_3:-49160754 | None:intergenic |
| GGTGCTGCACCAACGGTTTG+TGG | 0.495383 | 6_3:+49158045 | Msa0953220:CDS |
| AGACAGAAGACCGCCATTGT+AGG | 0.505097 | 6_3:-49160724 | None:intergenic |
| TAAATGAATTGATGCTGGGC+TGG | 0.505650 | 6_3:+49161162 | Msa0953220:three_prime_UTR |
| TCAGAAATAATGGTTTGCAT+TGG | 0.511193 | 6_3:+49160175 | Msa0953220:CDS |
| AGAGAATCTTATAGAACAGT+TGG | 0.512302 | 6_3:+49156939 | Msa0953220:CDS |
| GGTCTTCTGTCTACCGAGGC+CGG | 0.515135 | 6_3:+49160735 | Msa0953220:CDS |
| GCGTTTATCTTATCAACGAC+AGG | 0.515468 | 6_3:-49157805 | None:intergenic |
| CTAAGAGTTAAGGTATTTGG+AGG | 0.516674 | 6_3:+49161232 | Msa0953220:three_prime_UTR |
| AAACCTTTACAGAAGGTGTA+AGG | 0.517759 | 6_3:-49159297 | None:intergenic |
| GGATGTAAATGAATTGATGC+TGG | 0.520064 | 6_3:+49161157 | Msa0953220:three_prime_UTR |
| ATCCGCATGCAAGCATCAGC+TGG | 0.522900 | 6_3:+49158681 | Msa0953220:CDS |
| ATGTATTGCGGCTCAGAGTA+CGG | 0.524604 | 6_3:-49160226 | None:intergenic |
| CTGGTTTGAACTAAGAGTTA+AGG | 0.525046 | 6_3:+49161222 | Msa0953220:three_prime_UTR |
| AAGATAGACAAATTCAAGAA+TGG | 0.525573 | 6_3:+49156344 | Msa0953220:CDS |
| TGGGGCGATGGCTGTTGCAC+AGG | 0.527174 | 6_3:+49158077 | Msa0953220:CDS |
| CTGAAGTATGCCAGCTAATG+CGG | 0.527379 | 6_3:-49158742 | None:intergenic |
| ATCTTTCAACTTCTTCCCAA+AGG | 0.528111 | 6_3:-49156326 | None:intergenic |
| CAGAGTACGGAAAGATTACA+TGG | 0.528990 | 6_3:-49160213 | None:intergenic |
| TCCGGCCAATTCAATTGGAT+CGG | 0.530663 | 6_3:+49159264 | Msa0953220:CDS |
| TGGTATTGTTATTGGGGCGA+TGG | 0.532077 | 6_3:+49158065 | Msa0953220:CDS |
| ACACCAAATCAGACAAATGC+TGG | 0.533393 | 6_3:+49158903 | Msa0953220:CDS |
| AAGCCTTGGTGCTGCACCAA+CGG | 0.534952 | 6_3:+49158038 | Msa0953220:CDS |
| GCCGATCCAATTGAATTGGC+CGG | 0.537673 | 6_3:-49159265 | None:intergenic |
| TCATCAACATGTTCCTCAGA+AGG | 0.537928 | 6_3:-49157913 | None:intergenic |
| GCAAGCAGGATAGCAAAGCT+TGG | 0.542754 | 6_3:+49156861 | Msa0953220:CDS |
| CTTTCTCGTGGAACCTACAA+TGG | 0.543781 | 6_3:+49160711 | Msa0953220:CDS |
| TCTCCCTGTGCAGTAGACAA+TGG | 0.544469 | 6_3:+49159097 | Msa0953220:intron |
| TGAAGTATGCCAGCTAATGC+GGG | 0.544968 | 6_3:-49158741 | None:intergenic |
| GTTAGGGTTAGGATGAGTTG+AGG | 0.545156 | 6_3:+49161136 | Msa0953220:three_prime_UTR |
| GGTTTGTGGTATTGTTATTG+GGG | 0.545464 | 6_3:+49158059 | Msa0953220:CDS |
| CTTGAACACTTGTTGCAGCT+GGG | 0.546183 | 6_3:-49157099 | None:intergenic |
| TCAAAATACCTTGCCAGGGT+GGG | 0.550124 | 6_3:+49158797 | Msa0953220:CDS |
| ATTGGTCCCTTCGGATTAGT+CGG | 0.550962 | 6_3:-49155529 | None:intergenic |
| CATCAACATGTTCCTCAGAA+GGG | 0.551769 | 6_3:-49157912 | None:intergenic |
| AAAACCTGAAGAGGAAGAGC+AGG | 0.553677 | 6_3:-49157350 | None:intergenic |
| GATGATTACTCTACAAGCCT+TGG | 0.554973 | 6_3:+49158024 | Msa0953220:CDS |
| TTCTCTTCGGCAAAATGAGA+AGG | 0.558723 | 6_3:-49158876 | None:intergenic |
| ATCAAAATACCTTGCCAGGG+TGG | 0.564697 | 6_3:+49158796 | Msa0953220:CDS |
| GACAAATTCAAGAATGGCAA+GGG | 0.566272 | 6_3:+49156350 | Msa0953220:CDS |
| TATGAGGCTCAGATTGAAAG+AGG | 0.571442 | 6_3:+49160918 | Msa0953220:three_prime_UTR |
| TGCTGATGCTACCATTACAT+TGG | 0.571641 | 6_3:+49160776 | Msa0953220:CDS |
| TTGATGATTGCAGGAAGAGA+TGG | 0.571930 | 6_3:+49156300 | Msa0953220:intron |
| TTTGTGGAGATCAATGCCGT+TGG | 0.572433 | 6_3:+49156987 | Msa0953220:CDS |
| TTCAACAGGGGACACTAGAT+CGG | 0.572677 | 6_3:+49156543 | Msa0953220:CDS |
| GTAGAGTAATCATCTGCTGT+AGG | 0.576453 | 6_3:-49158015 | None:intergenic |
| AATACTGAAATGACGAGTGA+AGG | 0.577088 | 6_3:-49160843 | None:intergenic |
| TAAGCAACATGTTTGAGGAC+AGG | 0.578429 | 6_3:+49159767 | Msa0953220:CDS |
| ATATGTAATTTGTAGGGGAT+AGG | 0.585760 | 6_3:+49157248 | Msa0953220:intron |
| ATCCAATTGAATTGGCCGGA+AGG | 0.586214 | 6_3:-49159261 | None:intergenic |
| TAGTGCTAGTGCTCTCGGAA+TGG | 0.587476 | 6_3:+49158710 | Msa0953220:CDS |
| GTTCCTCAGAAGGGGTAGGA+AGG | 0.587667 | 6_3:-49157903 | None:intergenic |
| AGACAAATTCAAGAATGGCA+AGG | 0.588785 | 6_3:+49156349 | Msa0953220:CDS |
| CACAATCACTTATATAACGC+CGG | 0.592276 | 6_3:-49158647 | None:intergenic |
| TGATCTCCACAAAATAGAGT+AGG | 0.592975 | 6_3:-49156977 | None:intergenic |
| TCAGATTCAAACACAGGCAA+AGG | 0.595583 | 6_3:+49161257 | Msa0953220:three_prime_UTR |
| TCAATATGGATTCTCTTACT+CGG | 0.596043 | 6_3:+49158219 | Msa0953220:CDS |
| ACGAGCTTCAAGATCGTCAA+GGG | 0.596534 | 6_3:+49157303 | Msa0953220:CDS |
| AGCCATAACCCACCCTGGCA+AGG | 0.598040 | 6_3:-49158805 | None:intergenic |
| AGTTCACAAACCTTTACAGA+AGG | 0.599727 | 6_3:-49159304 | None:intergenic |
| GTCCATACAAAGCTTCACTC+TGG | 0.600107 | 6_3:-49155558 | None:intergenic |
| CAATATCTTACGCAAGCCAA+CGG | 0.602504 | 6_3:-49157003 | None:intergenic |
| TTTCACGCGTCATGTCATCA+AGG | 0.603261 | 6_3:+49160688 | Msa0953220:CDS |
| CGACCTTCCTACCCCTTCTG+AGG | 0.604659 | 6_3:+49157900 | Msa0953220:CDS |
| CATGCAAACAACACTTACAA+AGG | 0.604952 | 6_3:-49155722 | None:intergenic |
| GAGGTCTCAGATTCAAACAC+AGG | 0.606844 | 6_3:+49161251 | Msa0953220:three_prime_UTR |
| TGATACTGGTATCTGGCTCG+AGG | 0.611587 | 6_3:+49155505 | Msa0953220:five_prime_UTR |
| GCCACGCTGCTGAATACAAG+AGG | 0.612304 | 6_3:-49158150 | None:intergenic |
| TTAATCAAAATACCTTGCCA+GGG | 0.612677 | 6_3:+49158793 | Msa0953220:CDS |
| TCGAGGACCGACTAATCCGA+AGG | 0.615215 | 6_3:+49155522 | Msa0953220:five_prime_UTR |
| CACGAGCTTCAAGATCGTCA+AGG | 0.615606 | 6_3:+49157302 | Msa0953220:CDS |
| CCAAGATTATGATGATAGTG+AGG | 0.616400 | 6_3:+49159219 | Msa0953220:CDS |
| ATCAACATGTTCCTCAGAAG+GGG | 0.619085 | 6_3:-49157911 | None:intergenic |
| CAGGAAGAACTGTCAAGCCA+AGG | 0.625771 | 6_3:-49159720 | None:intergenic |
| AACCAGCTGATGCTTGCATG+CGG | 0.629035 | 6_3:-49158683 | None:intergenic |
| TTACAGAAGGTGTAAGGAGT+CGG | 0.632745 | 6_3:-49159291 | None:intergenic |
| AGATCGGCGACATGTTCTCA+AGG | 0.632901 | 6_3:+49156559 | Msa0953220:CDS |
| GCAACAAGTGTTCAAGCATG+TGG | 0.632988 | 6_3:+49157106 | Msa0953220:CDS |
| ACATGTTCCTCAGAAGGGGT+AGG | 0.632992 | 6_3:-49157907 | None:intergenic |
| GCAATAGCCATAACCCACCC+TGG | 0.634497 | 6_3:-49158810 | None:intergenic |
| GATGTAAATGAATTGATGCT+GGG | 0.634894 | 6_3:+49161158 | Msa0953220:three_prime_UTR |
| ATGTCATCAAGGCTTTCTCG+TGG | 0.635054 | 6_3:+49160699 | Msa0953220:CDS |
| TGATAGTGAGGAAGCTCCAG+AGG | 0.635684 | 6_3:+49159231 | Msa0953220:CDS |
| GACAATGGTGCAGTAGACAA+TGG | 0.637298 | 6_3:+49159112 | Msa0953220:CDS |
| AGTGCTCTCGGAATGGCATG+TGG | 0.651074 | 6_3:+49158717 | Msa0953220:CDS |
| ATAACAATACCACAAACCGT+TGG | 0.660271 | 6_3:-49158054 | None:intergenic |
| CTGGTCAACCAGCACAGTTG+CGG | 0.666141 | 6_3:+49159684 | Msa0953220:CDS |
| GCCTCTTGTATTCAGCAGCG+TGG | 0.666891 | 6_3:+49158149 | Msa0953220:CDS |
| AGACCCGAACAGATGTATTG+CGG | 0.670207 | 6_3:-49160238 | None:intergenic |
| AAACCGTTGGTGCAGCACCA+AGG | 0.670373 | 6_3:-49158041 | None:intergenic |
| AATGACGAGTGAAGGAAGCA+AGG | 0.674377 | 6_3:-49160835 | None:intergenic |
| TCTCGTGGAACCTACAATGG+CGG | 0.677410 | 6_3:+49160714 | Msa0953220:CDS |
| CGAGGACCGACTAATCCGAA+GGG | 0.690952 | 6_3:+49155523 | Msa0953220:five_prime_UTR |
| TGGCGGTCTTCTGTCTACCG+AGG | 0.691367 | 6_3:+49160731 | Msa0953220:CDS |
| AATGCATAATGATTTGCAGG+AGG | 0.700598 | 6_3:+49156887 | Msa0953220:CDS |
| ATGCTCAACAAATTCAACAG+GGG | 0.720657 | 6_3:+49156531 | Msa0953220:CDS |
| TATGCTCAACAAATTCAACA+GGG | 0.739229 | 6_3:+49156530 | Msa0953220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAATAACAAATTAAAA+GGG | - | chr6_3:49156252-49156271 | None:intergenic | 10.0% |
| !! | TAAATCAATAACAAATTAAA+AGG | - | chr6_3:49156253-49156272 | None:intergenic | 10.0% |
| !! | TAATTTCTCAAAAAAATAAA+TGG | - | chr6_3:49159831-49159850 | None:intergenic | 10.0% |
| !!! | AATTGTATTATTTTTCATAT+TGG | + | chr6_3:49160105-49160124 | Msa0953220:intron | 10.0% |
| !! | AAGACCAATAAAAATAAAAA+GGG | - | chr6_3:49155821-49155840 | None:intergenic | 15.0% |
| !! | TAAGACCAATAAAAATAAAA+AGG | - | chr6_3:49155822-49155841 | None:intergenic | 15.0% |
| !! | TAATATATTCAGTTCAAAAA+TGG | + | chr6_3:49157129-49157148 | Msa0953220:intron | 15.0% |
| !!! | TTTATATACCATTATTTTAC+TGG | + | chr6_3:49158480-49158499 | Msa0953220:intron | 15.0% |
| !!! | TAATTAATAATGGTTGTTTT+AGG | - | chr6_3:49159168-49159187 | None:intergenic | 15.0% |
| !! | AAGAAATCTTATATAAAACA+TGG | - | chr6_3:49159470-49159489 | None:intergenic | 15.0% |
| !!! | TTATGTTAAAATAGTCATTT+TGG | - | chr6_3:49160411-49160430 | None:intergenic | 15.0% |
| !!! | AAAATGACTATTTTAACATA+AGG | + | chr6_3:49160410-49160429 | Msa0953220:intron | 15.0% |
| !!! | AAATGACTATTTTAACATAA+GGG | + | chr6_3:49160411-49160430 | Msa0953220:intron | 15.0% |
| !! | AATCACAATAATGAAAAATA+GGG | - | chr6_3:49160542-49160561 | None:intergenic | 15.0% |
| !!! | TTTCAATTCATTCATGTTTT+TGG | + | chr6_3:49155418-49155437 | Msa0953220:five_prime_UTR | 20.0% |
| !!! | TGAATATATTGTTTTGATAC+TGG | + | chr6_3:49155491-49155510 | Msa0953220:intron | 20.0% |
| !!! | ATATTTGCAGATTCATATTT+TGG | + | chr6_3:49155624-49155643 | Msa0953220:five_prime_UTR | 20.0% |
| !!! | TTGATTTAATTTACTCTCAT+TGG | + | chr6_3:49156012-49156031 | Msa0953220:intron | 20.0% |
| !!! | TGAAATTTTAAAGCTCAAAT+TGG | + | chr6_3:49156654-49156673 | Msa0953220:intron | 20.0% |
| !!! | TTTATATTTTCTTTTCCACT+TGG | + | chr6_3:49157410-49157429 | Msa0953220:intron | 20.0% |
| !!! | AAAAATGCTTTTGAATGAAT+TGG | + | chr6_3:49157457-49157476 | Msa0953220:intron | 20.0% |
| !! | ATACGTATTTAAACGTAAAT+CGG | - | chr6_3:49157525-49157544 | None:intergenic | 20.0% |
| !!! | ATTAACAGATCAATTTTTAG+AGG | - | chr6_3:49157715-49157734 | None:intergenic | 20.0% |
| !!! | AACAAACTTTCTTAACTTTT+TGG | + | chr6_3:49157852-49157871 | Msa0953220:CDS | 20.0% |
| !! | CATATGATGTTAATTCAATA+TGG | + | chr6_3:49158205-49158224 | Msa0953220:CDS | 20.0% |
| !! | TATATAAAATCTATGTACCA+CGG | - | chr6_3:49158468-49158487 | None:intergenic | 20.0% |
| !!! | AGGTATTTTGATTAAAAGTA+AGG | - | chr6_3:49158788-49158807 | None:intergenic | 20.0% |
| !! | ACAACCATTATTAATTACTT+CGG | + | chr6_3:49159171-49159190 | Msa0953220:CDS | 20.0% |
| !! | TTTCATGCTTAAATATGTAA+TGG | + | chr6_3:49159615-49159634 | Msa0953220:CDS | 20.0% |
| !!! | TACAATTTTCAACAACAATA+AGG | - | chr6_3:49160092-49160111 | None:intergenic | 20.0% |
| !!! | TTTTGAAATTTCGATACAAT+AGG | + | chr6_3:49160468-49160487 | Msa0953220:intron | 20.0% |
| !!! | TTTGAAATTTCGATACAATA+GGG | + | chr6_3:49160469-49160488 | Msa0953220:intron | 20.0% |
| !! | CAATCACAATAATGAAAAAT+AGG | - | chr6_3:49160543-49160562 | None:intergenic | 20.0% |
| !! | TTTCATTATTGTGATTGATA+TGG | + | chr6_3:49160546-49160565 | Msa0953220:intron | 20.0% |
| !!! | ATTTGTTTCGATTATTTTTC+TGG | + | chr6_3:49160601-49160620 | Msa0953220:intron | 20.0% |
| !!! | AATGTGAATTTTGGTAAAAT+GGG | + | chr6_3:49161022-49161041 | Msa0953220:three_prime_UTR | 20.0% |
| !!! | GAGACCCTTTTTATTTTTAT+TGG | + | chr6_3:49155814-49155833 | Msa0953220:intron | 25.0% |
| ! | TGGTTAATAAGTTTCAGTTA+AGG | - | chr6_3:49155946-49155965 | None:intergenic | 25.0% |
| ! | ATCAATAGCCAATTGAAAAA+GGG | - | chr6_3:49155997-49156016 | None:intergenic | 25.0% |
| ! | AATCAATAGCCAATTGAAAA+AGG | - | chr6_3:49155998-49156017 | None:intergenic | 25.0% |
| ! | AAGATAGACAAATTCAAGAA+TGG | + | chr6_3:49156344-49156363 | Msa0953220:CDS | 25.0% |
| !!! | GAATATTAGTCTTAAAGTAG+TGG | + | chr6_3:49156420-49156439 | Msa0953220:intron | 25.0% |
| ! | TCTATAAGATTCTCTTAGTT+CGG | - | chr6_3:49156934-49156953 | None:intergenic | 25.0% |
| ! | ATTTGTATTCGAGAATTTCT+CGG | - | chr6_3:49157179-49157198 | None:intergenic | 25.0% |
| !! | TGAAGGATATGTAATTTGTA+GGG | + | chr6_3:49157242-49157261 | Msa0953220:intron | 25.0% |
| !! | AAAACAAGATTAGTGTTTTG+AGG | - | chr6_3:49157393-49157412 | None:intergenic | 25.0% |
| !! | TGGTTATGTAAAATTGATTC+TGG | + | chr6_3:49157477-49157496 | Msa0953220:intron | 25.0% |
| ! | TAGATTGAACAATAAACTTG+AGG | + | chr6_3:49157552-49157571 | Msa0953220:intron | 25.0% |
| !!! | AAGAATTGATTTGGTATCTA+GGG | - | chr6_3:49157634-49157653 | None:intergenic | 25.0% |
| !!! | TGAATTGATTTTCACATGTT+TGG | - | chr6_3:49157668-49157687 | None:intergenic | 25.0% |
| !! | TTAATGCATGCTTTATTAAC+TGG | + | chr6_3:49157730-49157749 | Msa0953220:intron | 25.0% |
| !!! | ATTTACTTGGTTTTATATGC+AGG | + | chr6_3:49157780-49157799 | Msa0953220:intron | 25.0% |
| ! | TTCATGTACCAGTAAAATAA+TGG | - | chr6_3:49158491-49158510 | None:intergenic | 25.0% |
| !! | TGTTTTCAGCAACATAAAAA+AGG | - | chr6_3:49158586-49158605 | None:intergenic | 25.0% |
| ! | AAACAATAATCAACATGTAG+AGG | - | chr6_3:49158944-49158963 | None:intergenic | 25.0% |
| ! | TAAGATGATGTAATCATACA+AGG | - | chr6_3:49158987-49159006 | None:intergenic | 25.0% |
| ! | GAATCATAGAACTCAAAAAA+AGG | - | chr6_3:49159043-49159062 | None:intergenic | 25.0% |
| ! | TCATCCGAAGTAATTAATAA+TGG | - | chr6_3:49159178-49159197 | None:intergenic | 25.0% |
| ! | ATTAATTACTTCGGATGATA+AGG | + | chr6_3:49159180-49159199 | Msa0953220:CDS | 25.0% |
| !!! | CATTCTCACTTTTATGATAT+TGG | + | chr6_3:49159327-49159346 | Msa0953220:intron | 25.0% |
| !!! | ACCATTTTTGAATTGATTAC+TGG | + | chr6_3:49159395-49159414 | Msa0953220:intron | 25.0% |
| ! | ACCAGTAATCAATTCAAAAA+TGG | - | chr6_3:49159399-49159418 | None:intergenic | 25.0% |
| !!! | GTGTGCTGATTATTTATTTT+AGG | + | chr6_3:49159426-49159445 | Msa0953220:intron | 25.0% |
| ! | TTAGACAATAATCGTAACTA+TGG | - | chr6_3:49159938-49159957 | None:intergenic | 25.0% |
| ! | GCAACATTATAATCTCTATA+GGG | - | chr6_3:49160038-49160057 | None:intergenic | 25.0% |
| ! | AGCAACATTATAATCTCTAT+AGG | - | chr6_3:49160039-49160058 | None:intergenic | 25.0% |
| !!! | TTATTTTTCATATTGGTCTG+AGG | + | chr6_3:49160112-49160131 | Msa0953220:intron | 25.0% |
| !!! | TATTTTTCATATTGGTCTGA+GGG | + | chr6_3:49160113-49160132 | Msa0953220:intron | 25.0% |
| !! | TCATATTTTCCATCTGTTTT+AGG | + | chr6_3:49160137-49160156 | Msa0953220:intron | 25.0% |
| ! | GCGCAAAATCTTAAAATATA+AGG | - | chr6_3:49160312-49160331 | None:intergenic | 25.0% |
| ! | GTTAAAATGATACTGTAGTT+AGG | + | chr6_3:49160568-49160587 | Msa0953220:intron | 25.0% |
| !!! | GACAATATATCATTGATTCT+AGG | + | chr6_3:49160648-49160667 | Msa0953220:intron | 25.0% |
| ! | AAATCAGTATAAGGAATTGT+AGG | - | chr6_3:49160892-49160911 | None:intergenic | 25.0% |
| ! | ATAGGATAGAAATCAGTATA+AGG | - | chr6_3:49160901-49160920 | None:intergenic | 25.0% |
| !!! | TCTTTTTCAATCAAGTCTTA+TGG | + | chr6_3:49160948-49160967 | Msa0953220:three_prime_UTR | 25.0% |
| !!! | ATCTAGGTTGTTATTTATGT+AGG | + | chr6_3:49160992-49161011 | Msa0953220:three_prime_UTR | 25.0% |
| !!! | CAATGTGAATTTTGGTAAAA+TGG | + | chr6_3:49161021-49161040 | Msa0953220:three_prime_UTR | 25.0% |
| !! | TCATCCTTTTTGATATAGTT+AGG | + | chr6_3:49161119-49161138 | Msa0953220:three_prime_UTR | 25.0% |
| !! | CATCCTTTTTGATATAGTTA+GGG | + | chr6_3:49161120-49161139 | Msa0953220:three_prime_UTR | 25.0% |
| ! | TAACCCTAACTATATCAAAA+AGG | - | chr6_3:49161126-49161145 | None:intergenic | 25.0% |
| !! | TTTTTGATATAGTTAGGGTT+AGG | + | chr6_3:49161125-49161144 | Msa0953220:three_prime_UTR | 25.0% |
| !!! | TTTTGTTTTGTTATCTCAAC+TGG | + | chr6_3:49161203-49161222 | Msa0953220:three_prime_UTR | 25.0% |
| !!! | ATTGTTTTGATACTGGTATC+TGG | + | chr6_3:49155498-49155517 | Msa0953220:intron | 30.0% |
| !! | TTTGCAGATTCATATTTTGG+TGG | + | chr6_3:49155627-49155646 | Msa0953220:five_prime_UTR | 30.0% |
| !!! | TTTTATTGGTCTTAACTCTC+TGG | + | chr6_3:49155828-49155847 | Msa0953220:intron | 30.0% |
| TTCAGTTAAGGTTTGAATCT+GGG | - | chr6_3:49155934-49155953 | None:intergenic | 30.0% | |
| TTTCAGTTAAGGTTTGAATC+TGG | - | chr6_3:49155935-49155954 | None:intergenic | 30.0% | |
| !!! | TTGAAAGACCCTTTTTCAAT+TGG | + | chr6_3:49155986-49156005 | Msa0953220:intron | 30.0% |
| TAATTTACTCTCATTGGCAA+AGG | + | chr6_3:49156018-49156037 | Msa0953220:intron | 30.0% | |
| TGACCAATGATTATTCTAGT+CGG | + | chr6_3:49156105-49156124 | Msa0953220:intron | 30.0% | |
| AAAAAAAAAAAGGTCGAGTC+AGG | - | chr6_3:49156149-49156168 | None:intergenic | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | - | chr6_3:49156198-49156217 | None:intergenic | 30.0% | |
| ATATGCTCAACAAATTCAAC+AGG | + | chr6_3:49156529-49156548 | Msa0953220:CDS | 30.0% | |
| TATGCTCAACAAATTCAACA+GGG | + | chr6_3:49156530-49156549 | Msa0953220:CDS | 30.0% | |
| CATCATTATGCATTCAACAA+AGG | - | chr6_3:49156624-49156643 | None:intergenic | 30.0% | |
| ! | CAGCAATGATTCATTTTACT+CGG | - | chr6_3:49156707-49156726 | None:intergenic | 30.0% |
| ! | AGAAATGCATAATGATTTGC+AGG | + | chr6_3:49156884-49156903 | Msa0953220:CDS | 30.0% |
| AGAGAATCTTATAGAACAGT+TGG | + | chr6_3:49156939-49156958 | Msa0953220:CDS | 30.0% | |
| ! | ACTAAACCTACTCTATTTTG+TGG | + | chr6_3:49156971-49156990 | Msa0953220:CDS | 30.0% |
| ! | CTGAAGGATATGTAATTTGT+AGG | + | chr6_3:49157241-49157260 | Msa0953220:intron | 30.0% |
| ! | GAAGGATATGTAATTTGTAG+GGG | + | chr6_3:49157243-49157262 | Msa0953220:intron | 30.0% |
| ! | ATATGTAATTTGTAGGGGAT+AGG | + | chr6_3:49157248-49157267 | Msa0953220:intron | 30.0% |
| ATGAGAATAAAAACCTGAAG+AGG | - | chr6_3:49157362-49157381 | None:intergenic | 30.0% | |
| !! | GAAGAATTGATTTGGTATCT+AGG | - | chr6_3:49157635-49157654 | None:intergenic | 30.0% |
| AACACTTCTCGAATCAATTT+GGG | + | chr6_3:49157687-49157706 | Msa0953220:intron | 30.0% | |
| ! | CATGCTTTATTAACTGGTTA+AGG | + | chr6_3:49157736-49157755 | Msa0953220:intron | 30.0% |
| !! | GTTAAGAAAGTTTGTTGAGT+TGG | - | chr6_3:49157848-49157867 | None:intergenic | 30.0% |
| TCAATATGGATTCTCTTACT+CGG | + | chr6_3:49158219-49158238 | Msa0953220:CDS | 30.0% | |
| TATGTTCATCAAGTAATGAC+AGG | - | chr6_3:49158290-49158309 | None:intergenic | 30.0% | |
| TTTAATCAAAATACCTTGCC+AGG | + | chr6_3:49158792-49158811 | Msa0953220:CDS | 30.0% | |
| TTAATCAAAATACCTTGCCA+GGG | + | chr6_3:49158793-49158812 | Msa0953220:CDS | 30.0% | |
| TGGTATATCTAGTATGGTTA+TGG | + | chr6_3:49158838-49158857 | Msa0953220:CDS | 30.0% | |
| !! | ATTTGGTGTATGATTCTCTT+CGG | - | chr6_3:49158892-49158911 | None:intergenic | 30.0% |
| AGATGATGTTCTGTTTCATT+CGG | + | chr6_3:49159006-49159025 | Msa0953220:intron | 30.0% | |
| TAAATAATCAGCACACTGAA+GGG | - | chr6_3:49159422-49159441 | None:intergenic | 30.0% | |
| ATAAATAATCAGCACACTGA+AGG | - | chr6_3:49159423-49159442 | None:intergenic | 30.0% | |
| TAAAATTCACCATGTTCCAA+TGG | + | chr6_3:49159508-49159527 | Msa0953220:intron | 30.0% | |
| AAGATGATGATTGGATGAAA+TGG | + | chr6_3:49159531-49159550 | Msa0953220:intron | 30.0% | |
| ! | CTGCAGTTTTTACAAAACTT+CGG | - | chr6_3:49159578-49159597 | None:intergenic | 30.0% |
| TTTCCAACAACAATGTTTAC+AGG | - | chr6_3:49159742-49159761 | None:intergenic | 30.0% | |
| GATGACAATCAAATGTATCA+TGG | - | chr6_3:49159916-49159935 | None:intergenic | 30.0% | |
| AATTCTCGCTAAAATAGTGA+GGG | + | chr6_3:49160000-49160019 | Msa0953220:intron | 30.0% | |
| TTATAATGTTGCTCTGTCAA+AGG | + | chr6_3:49160046-49160065 | Msa0953220:intron | 30.0% | |
| !! | AACAACAATAAGGCTCTAAA+TGG | - | chr6_3:49160082-49160101 | None:intergenic | 30.0% |
| !! | ATTTTTCATATTGGTCTGAG+GGG | + | chr6_3:49160114-49160133 | Msa0953220:intron | 30.0% |
| TCTGTTGACATCAGAAATAA+TGG | + | chr6_3:49160165-49160184 | Msa0953220:CDS | 30.0% | |
| ! | TCAGAAATAATGGTTTGCAT+TGG | + | chr6_3:49160175-49160194 | Msa0953220:CDS | 30.0% |
| TGCACCTTAACATTATAATC+TGG | - | chr6_3:49160334-49160353 | None:intergenic | 30.0% | |
| AATTACTCTAGCAATTGTTC+CGG | - | chr6_3:49160757-49160776 | None:intergenic | 30.0% | |
| !!! | ATTACATTGGCTGGTTTTTT+GGG | + | chr6_3:49160789-49160808 | Msa0953220:CDS | 30.0% |
| !! | ATACTGATTTCTATCCTATG+AGG | + | chr6_3:49160902-49160921 | Msa0953220:exon | 30.0% |
| !! | GAACATTTGGAAAAGTATCT+AGG | + | chr6_3:49160976-49160995 | Msa0953220:three_prime_UTR | 30.0% |
| !! | GGTTGTTTCAATGTGAATTT+TGG | + | chr6_3:49161013-49161032 | Msa0953220:three_prime_UTR | 30.0% |
| GATGTAAATGAATTGATGCT+GGG | + | chr6_3:49161158-49161177 | Msa0953220:three_prime_UTR | 30.0% | |
| ! | GAACTAAGAGTTAAGGTATT+TGG | + | chr6_3:49161229-49161248 | Msa0953220:three_prime_UTR | 30.0% |
| !!! | CATATTTTGGTGGTACAAAG+TGG | + | chr6_3:49155637-49155656 | Msa0953220:five_prime_UTR | 35.0% |
| CATGCAAACAACACTTACAA+AGG | - | chr6_3:49155725-49155744 | None:intergenic | 35.0% | |
| TCAGACTTTACTTACTTCCA+GGG | - | chr6_3:49156088-49156107 | None:intergenic | 35.0% | |
| GACCAATGATTATTCTAGTC+GGG | + | chr6_3:49156106-49156125 | Msa0953220:intron | 35.0% | |
| ACCAATGATTATTCTAGTCG+GGG | + | chr6_3:49156107-49156126 | Msa0953220:intron | 35.0% | |
| CTTCCTGCAATCATCAAAAA+CGG | - | chr6_3:49156297-49156316 | None:intergenic | 35.0% | |
| ATCTTTCAACTTCTTCCCAA+AGG | - | chr6_3:49156329-49156348 | None:intergenic | 35.0% | |
| AGACAAATTCAAGAATGGCA+AGG | + | chr6_3:49156349-49156368 | Msa0953220:CDS | 35.0% | |
| GACAAATTCAAGAATGGCAA+GGG | + | chr6_3:49156350-49156369 | Msa0953220:CDS | 35.0% | |
| ATGCTCAACAAATTCAACAG+GGG | + | chr6_3:49156531-49156550 | Msa0953220:CDS | 35.0% | |
| ! | AATGCATAATGATTTGCAGG+AGG | + | chr6_3:49156887-49156906 | Msa0953220:CDS | 35.0% |
| TGATCTCCACAAAATAGAGT+AGG | - | chr6_3:49156980-49156999 | None:intergenic | 35.0% | |
| AAGAAGTTTGATAAGCGCTT+TGG | + | chr6_3:49157026-49157045 | Msa0953220:CDS | 35.0% | |
| ! | AATGAATGAACATCGACTGA+AGG | + | chr6_3:49157225-49157244 | Msa0953220:intron | 35.0% |
| CAGGCTGATCATAAATTGAT+AGG | - | chr6_3:49157334-49157353 | None:intergenic | 35.0% | |
| !!! | AGATTAGTGTTTTGAGGACA+AGG | - | chr6_3:49157387-49157406 | None:intergenic | 35.0% |
| GGCTAGAAATGAATTGTAGA+AGG | + | chr6_3:49157573-49157592 | Msa0953220:intron | 35.0% | |
| GTTCTCAGGAAGAATTGATT+TGG | - | chr6_3:49157643-49157662 | None:intergenic | 35.0% | |
| CAACACTTCTCGAATCAATT+TGG | + | chr6_3:49157686-49157705 | Msa0953220:intron | 35.0% | |
| !! | AAGGTTGGTGTTGATTTACT+TGG | + | chr6_3:49157767-49157786 | Msa0953220:intron | 35.0% |
| TCAGCAGAAGAGACATAAAA+TGG | - | chr6_3:49157948-49157967 | None:intergenic | 35.0% | |
| ATAACAATACCACAAACCGT+TGG | - | chr6_3:49158057-49158076 | None:intergenic | 35.0% | |
| ACGGTTTGTGGTATTGTTAT+TGG | + | chr6_3:49158057-49158076 | Msa0953220:CDS | 35.0% | |
| ! | CGGTTTGTGGTATTGTTATT+GGG | + | chr6_3:49158058-49158077 | Msa0953220:CDS | 35.0% |
| ! | GGTTTGTGGTATTGTTATTG+GGG | + | chr6_3:49158059-49158078 | Msa0953220:CDS | 35.0% |
| !!! | CTTCTGTGTATTTTAGTGCA+TGG | + | chr6_3:49158106-49158125 | Msa0953220:CDS | 35.0% |
| GGTCGAACAAATCATACTTT+AGG | + | chr6_3:49158127-49158146 | Msa0953220:CDS | 35.0% | |
| ! | AACATGTGTCGATATTGTGT+TGG | + | chr6_3:49158391-49158410 | Msa0953220:intron | 35.0% |
| ACTTGATTTCTTGTGCAGAT+TGG | + | chr6_3:49158605-49158624 | Msa0953220:intron | 35.0% | |
| CTTGATTTCTTGTGCAGATT+GGG | + | chr6_3:49158606-49158625 | Msa0953220:intron | 35.0% | |
| CACAATCACTTATATAACGC+CGG | - | chr6_3:49158650-49158669 | None:intergenic | 35.0% | |
| ! | ATGGTTATGGATCTCTTTTC+AGG | + | chr6_3:49158851-49158870 | Msa0953220:CDS | 35.0% |
| ATACCAGCATTTGTCTGATT+TGG | - | chr6_3:49158909-49158928 | None:intergenic | 35.0% | |
| GACAATAGTGCACTAGAAAA+AGG | + | chr6_3:49159142-49159161 | Msa0953220:CDS | 35.0% | |
| CCTCACTATCATCATAATCT+TGG | - | chr6_3:49159222-49159241 | None:intergenic | 35.0% | |
| ! | CCAAGATTATGATGATAGTG+AGG | + | chr6_3:49159219-49159238 | Msa0953220:CDS | 35.0% |
| ! | AAACCTTTACAGAAGGTGTA+AGG | - | chr6_3:49159300-49159319 | None:intergenic | 35.0% |
| AGTTCACAAACCTTTACAGA+AGG | - | chr6_3:49159307-49159326 | None:intergenic | 35.0% | |
| TTCCAATGGAAGATGATGAT+TGG | + | chr6_3:49159522-49159541 | Msa0953220:intron | 35.0% | |
| ATCCAATCATCATCTTCCAT+TGG | - | chr6_3:49159527-49159546 | None:intergenic | 35.0% | |
| ! | GTTTTTACAAAACTTCGGTC+AGG | - | chr6_3:49159573-49159592 | None:intergenic | 35.0% |
| !! | CGAAGTTTTGTAAAAACTGC+AGG | + | chr6_3:49159576-49159595 | Msa0953220:intron | 35.0% |
| TCACAACATACTACTTCAAC+TGG | + | chr6_3:49159665-49159684 | Msa0953220:CDS | 35.0% | |
| CTTCCTGTAAACATTGTTGT+TGG | + | chr6_3:49159736-49159755 | Msa0953220:CDS | 35.0% | |
| CTACATAAGCAACATGTTTG+AGG | + | chr6_3:49159762-49159781 | Msa0953220:CDS | 35.0% | |
| AAATTATAGACCGAGAAGAG+CGG | + | chr6_3:49159852-49159871 | Msa0953220:intron | 35.0% | |
| CAATTCTCGCTAAAATAGTG+AGG | + | chr6_3:49159999-49160018 | Msa0953220:intron | 35.0% | |
| CAGAATTTGCCTAAAACAGA+TGG | - | chr6_3:49160149-49160168 | None:intergenic | 35.0% | |
| CTTCAGCAGAAACAAATAGA+AGG | - | chr6_3:49160264-49160283 | None:intergenic | 35.0% | |
| TGCGCCAGATTATAATGTTA+AGG | + | chr6_3:49160327-49160346 | Msa0953220:intron | 35.0% | |
| CAAAAAACCAGCCAATGTAA+TGG | - | chr6_3:49160790-49160809 | None:intergenic | 35.0% | |
| !!! | CATTACATTGGCTGGTTTTT+TGG | + | chr6_3:49160788-49160807 | Msa0953220:CDS | 35.0% |
| AATACTGAAATGACGAGTGA+AGG | - | chr6_3:49160846-49160865 | None:intergenic | 35.0% | |
| TAAGGAATTGTAGGTATAGC+AGG | - | chr6_3:49160883-49160902 | None:intergenic | 35.0% | |
| GGATGTAAATGAATTGATGC+TGG | + | chr6_3:49161157-49161176 | Msa0953220:three_prime_UTR | 35.0% | |
| ! | CTGGTTTGAACTAAGAGTTA+AGG | + | chr6_3:49161222-49161241 | Msa0953220:three_prime_UTR | 35.0% |
| ! | CTAAGAGTTAAGGTATTTGG+AGG | + | chr6_3:49161232-49161251 | Msa0953220:three_prime_UTR | 35.0% |
| !! | TGGCTTTAAATTGGTCCCTT+CGG | - | chr6_3:49155541-49155560 | None:intergenic | 40.0% |
| !! | GCTTCACTCTGGCTTTAAAT+TGG | - | chr6_3:49155550-49155569 | None:intergenic | 40.0% |
| ! | ACTCTCTGGTTTATGCAGAA+AGG | + | chr6_3:49155842-49155861 | Msa0953220:intron | 40.0% |
| ! | CTCTCTGGTTTATGCAGAAA+GGG | + | chr6_3:49155843-49155862 | Msa0953220:intron | 40.0% |
| GTTTATGCAGAAAGGGACTA+TGG | + | chr6_3:49155850-49155869 | Msa0953220:intron | 40.0% | |
| AGAAAGGGACTATGGTAAAC+CGG | + | chr6_3:49155858-49155877 | Msa0953220:intron | 40.0% | |
| ! | CTTTATTTACATCCCATCCC+AGG | - | chr6_3:49155890-49155909 | None:intergenic | 40.0% |
| GAAAAAGGGTCTTTCAAACG+AGG | - | chr6_3:49155983-49156002 | None:intergenic | 40.0% | |
| ! | TTGGCAAAGGCAATTTTGAG+AGG | + | chr6_3:49156031-49156050 | Msa0953220:intron | 40.0% |
| GTCAGACTTTACTTACTTCC+AGG | - | chr6_3:49156089-49156108 | None:intergenic | 40.0% | |
| TCCCCGACTAGAATAATCAT+TGG | - | chr6_3:49156111-49156130 | None:intergenic | 40.0% | |
| AGGTAGTTGAACTGAACAAG+TGG | - | chr6_3:49156218-49156237 | None:intergenic | 40.0% | |
| ACTTGTTCAGTTCAACTACC+TGG | + | chr6_3:49156217-49156236 | Msa0953220:intron | 40.0% | |
| TTAAAAGGGTCTCTCAAACC+AGG | - | chr6_3:49156238-49156257 | None:intergenic | 40.0% | |
| !!! | AAGCCGTTTTTGATGATTGC+AGG | + | chr6_3:49156291-49156310 | Msa0953220:intron | 40.0% |
| ! | TTGATGATTGCAGGAAGAGA+TGG | + | chr6_3:49156300-49156319 | Msa0953220:intron | 40.0% |
| ! | GTTTGCTCTTGTGTTGTTGA+AGG | + | chr6_3:49156380-49156399 | Msa0953220:intron | 40.0% |
| AACTCATGAAGAAGCGAGTA+AGG | + | chr6_3:49156504-49156523 | Msa0953220:CDS | 40.0% | |
| CAAGGATTTCTCACGAATGT+TGG | + | chr6_3:49156577-49156596 | Msa0953220:CDS | 40.0% | |
| CTCACGAATGTTGGATAATC+AGG | + | chr6_3:49156586-49156605 | Msa0953220:CDS | 40.0% | |
| ! | GAAGATTGTCCTTTTCCTGT+TGG | + | chr6_3:49156821-49156840 | Msa0953220:CDS | 40.0% |
| ! | TTTTCCTGTTGGAGCAACAA+GGG | + | chr6_3:49156832-49156851 | Msa0953220:CDS | 40.0% |
| !! | TCGGCTATTTTGTGTATCTC+AGG | - | chr6_3:49156915-49156934 | None:intergenic | 40.0% |
| CAATATCTTACGCAAGCCAA+CGG | - | chr6_3:49157006-49157025 | None:intergenic | 40.0% | |
| TCACATGTTTGGATGTTCTC+AGG | - | chr6_3:49157657-49157676 | None:intergenic | 40.0% | |
| ACTGGTTAAGGAATAGCTCA+AGG | + | chr6_3:49157748-49157767 | Msa0953220:intron | 40.0% | |
| GTTAAGGAATAGCTCAAGGT+TGG | + | chr6_3:49157752-49157771 | Msa0953220:intron | 40.0% | |
| GCGTTTATCTTATCAACGAC+AGG | - | chr6_3:49157808-49157827 | None:intergenic | 40.0% | |
| AGATAAACGCAGCTGTTGAT+AGG | + | chr6_3:49157818-49157837 | Msa0953220:CDS | 40.0% | |
| ATCAACATGTTCCTCAGAAG+GGG | - | chr6_3:49157914-49157933 | None:intergenic | 40.0% | |
| CATCAACATGTTCCTCAGAA+GGG | - | chr6_3:49157915-49157934 | None:intergenic | 40.0% | |
| TCATCAACATGTTCCTCAGA+AGG | - | chr6_3:49157916-49157935 | None:intergenic | 40.0% | |
| TATGTCTCTTCTGCTGAACT+TGG | + | chr6_3:49157951-49157970 | Msa0953220:CDS | 40.0% | |
| GTAGAGTAATCATCTGCTGT+AGG | - | chr6_3:49158018-49158037 | None:intergenic | 40.0% | |
| GATGATTACTCTACAAGCCT+TGG | + | chr6_3:49158024-49158043 | Msa0953220:CDS | 40.0% | |
| !!! | TTACTCGGTCGTCTTTTTTG+TGG | + | chr6_3:49158234-49158253 | Msa0953220:CDS | 40.0% |
| !!! | TACTCGGTCGTCTTTTTTGT+GGG | + | chr6_3:49158235-49158254 | Msa0953220:CDS | 40.0% |
| TGTCAGACTGTGATACATGT+CGG | + | chr6_3:49158414-49158433 | Msa0953220:intron | 40.0% | |
| ACTGTGATACATGTCGGAAA+CGG | + | chr6_3:49158420-49158439 | Msa0953220:intron | 40.0% | |
| CATACACAGATCAGTGCATT+TGG | - | chr6_3:49158541-49158560 | None:intergenic | 40.0% | |
| TTTGTTAGTGCTAGTGCTCT+CGG | + | chr6_3:49158705-49158724 | Msa0953220:CDS | 40.0% | |
| CTTGGCTGGTATATCTAGTA+TGG | + | chr6_3:49158832-49158851 | Msa0953220:CDS | 40.0% | |
| TTCTCTTCGGCAAAATGAGA+AGG | - | chr6_3:49158879-49158898 | None:intergenic | 40.0% | |
| ACACCAAATCAGACAAATGC+TGG | + | chr6_3:49158903-49158922 | Msa0953220:CDS | 40.0% | |
| GTATGCCGATCCAATTGAAT+TGG | - | chr6_3:49159272-49159291 | None:intergenic | 40.0% | |
| ! | TTACAGAAGGTGTAAGGAGT+CGG | - | chr6_3:49159294-49159313 | None:intergenic | 40.0% |
| ACTCCTTACACCTTCTGTAA+AGG | + | chr6_3:49159294-49159313 | Msa0953220:CDS | 40.0% | |
| CATCATCTTCCATTGGAACA+TGG | - | chr6_3:49159520-49159539 | None:intergenic | 40.0% | |
| TAAGCAACATGTTTGAGGAC+AGG | + | chr6_3:49159767-49159786 | Msa0953220:CDS | 40.0% | |
| CAGAGTACGGAAAGATTACA+TGG | - | chr6_3:49160216-49160235 | None:intergenic | 40.0% | |
| ! | GTTTCTGCTGAAGTACTAGA+AGG | + | chr6_3:49160271-49160290 | Msa0953220:CDS | 40.0% |
| TGGTCCATCACTATAGTTAC+TGG | - | chr6_3:49160391-49160410 | None:intergenic | 40.0% | |
| TCGACTAACAACGCATAATC+AGG | + | chr6_3:49160440-49160459 | Msa0953220:intron | 40.0% | |
| CGACTAACAACGCATAATCA+GGG | + | chr6_3:49160441-49160460 | Msa0953220:intron | 40.0% | |
| GACTACTCGTTACACATTCA+AGG | + | chr6_3:49160500-49160519 | Msa0953220:intron | 40.0% | |
| TGCTGATGCTACCATTACAT+TGG | + | chr6_3:49160776-49160795 | Msa0953220:CDS | 40.0% | |
| AAGGAAGCAAGGTGACATTA+AGG | - | chr6_3:49160827-49160846 | None:intergenic | 40.0% | |
| TCTTTCAATCTGAGCCTCAT+AGG | - | chr6_3:49160919-49160938 | None:intergenic | 40.0% | |
| TATGAGGCTCAGATTGAAAG+AGG | + | chr6_3:49160918-49160937 | Msa0953220:three_prime_UTR | 40.0% | |
| TCTTATGGCTCACGAACATT+TGG | + | chr6_3:49160963-49160982 | Msa0953220:three_prime_UTR | 40.0% | |
| TAAATGAATTGATGCTGGGC+TGG | + | chr6_3:49161162-49161181 | Msa0953220:three_prime_UTR | 40.0% | |
| TCAGATTCAAACACAGGCAA+AGG | + | chr6_3:49161257-49161276 | Msa0953220:three_prime_UTR | 40.0% | |
| !! | ATTGGTCCCTTCGGATTAGT+CGG | - | chr6_3:49155532-49155551 | None:intergenic | 45.0% |
| ! | AGCCAGAGTGAAGCTTTGTA+TGG | + | chr6_3:49155556-49155575 | Msa0953220:five_prime_UTR | 45.0% |
| GTCCATACAAAGCTTCACTC+TGG | - | chr6_3:49155561-49155580 | None:intergenic | 45.0% | |
| TACAAAGTGGTTGTTGCAGC+TGG | + | chr6_3:49155650-49155669 | Msa0953220:five_prime_UTR | 45.0% | |
| ! | ACGAGGTGTTTGAACTCAAG+TGG | - | chr6_3:49155966-49155985 | None:intergenic | 45.0% |
| !! | CAAAGGCAATTTTGAGAGGC+CGG | + | chr6_3:49156035-49156054 | Msa0953220:intron | 45.0% |
| CTTACTTCCAGGGAGAACTA+CGG | - | chr6_3:49156078-49156097 | None:intergenic | 45.0% | |
| TTCTAGTCGGGGATTGAACA+AGG | + | chr6_3:49156118-49156137 | Msa0953220:intron | 45.0% | |
| GTTTCAGTTAAGGTCGAGTC+AGG | - | chr6_3:49156188-49156207 | None:intergenic | 45.0% | |
| AGGAAGAGATGGTTGCCTTT+GGG | + | chr6_3:49156311-49156330 | Msa0953220:intron | 45.0% | |
| TTCAACAGGGGACACTAGAT+CGG | + | chr6_3:49156543-49156562 | Msa0953220:CDS | 45.0% | |
| CTTGTTGCTCCAACAGGAAA+AGG | - | chr6_3:49156833-49156852 | None:intergenic | 45.0% | |
| ! | CTTTTCCTGTTGGAGCAACA+AGG | + | chr6_3:49156831-49156850 | Msa0953220:CDS | 45.0% |
| TTTGTGGAGATCAATGCCGT+TGG | + | chr6_3:49156987-49157006 | Msa0953220:CDS | 45.0% | |
| ! | ACTTGTTGCAGCTGGGAATA+AGG | - | chr6_3:49157095-49157114 | None:intergenic | 45.0% |
| ! | CTTGAACACTTGTTGCAGCT+GGG | - | chr6_3:49157102-49157121 | None:intergenic | 45.0% |
| GCAACAAGTGTTCAAGCATG+TGG | + | chr6_3:49157106-49157125 | Msa0953220:CDS | 45.0% | |
| CTCGTGAAGATTGCGAGATA+AGG | - | chr6_3:49157288-49157307 | None:intergenic | 45.0% | |
| ACGAGCTTCAAGATCGTCAA+GGG | + | chr6_3:49157303-49157322 | Msa0953220:CDS | 45.0% | |
| AAAACCTGAAGAGGAAGAGC+AGG | - | chr6_3:49157353-49157372 | None:intergenic | 45.0% | |
| !!! | TTTTCCACTTGGTGCGAGTT+TGG | + | chr6_3:49157421-49157440 | Msa0953220:intron | 45.0% |
| ! | TGGTATTGTTATTGGGGCGA+TGG | + | chr6_3:49158065-49158084 | Msa0953220:CDS | 45.0% |
| ATACATGTCGGAAACGGACA+CGG | + | chr6_3:49158426-49158445 | Msa0953220:intron | 45.0% | |
| GCTTCAATCTGAATTGTCCG+TGG | + | chr6_3:49158448-49158467 | Msa0953220:intron | 45.0% | |
| TGAAGTATGCCAGCTAATGC+GGG | - | chr6_3:49158744-49158763 | None:intergenic | 45.0% | |
| CTGAAGTATGCCAGCTAATG+CGG | - | chr6_3:49158745-49158764 | None:intergenic | 45.0% | |
| ATCAAAATACCTTGCCAGGG+TGG | + | chr6_3:49158796-49158815 | Msa0953220:CDS | 45.0% | |
| TCAAAATACCTTGCCAGGGT+GGG | + | chr6_3:49158797-49158816 | Msa0953220:CDS | 45.0% | |
| GACAATGGTGCAGTAGACAA+TGG | + | chr6_3:49159112-49159131 | Msa0953220:CDS | 45.0% | |
| ATCCAATTGAATTGGCCGGA+AGG | - | chr6_3:49159264-49159283 | None:intergenic | 45.0% | |
| TCCGGCCAATTCAATTGGAT+CGG | + | chr6_3:49159264-49159283 | Msa0953220:CDS | 45.0% | |
| AAGAAAAACCGCAACTGTGC+TGG | - | chr6_3:49159695-49159714 | None:intergenic | 45.0% | |
| TAGAAACTAGTGCGAAGACG+TGG | - | chr6_3:49159886-49159905 | None:intergenic | 45.0% | |
| ATGTATTGCGGCTCAGAGTA+CGG | - | chr6_3:49160229-49160248 | None:intergenic | 45.0% | |
| TGAGCCGCAATACATCTGTT+CGG | + | chr6_3:49160234-49160253 | Msa0953220:CDS | 45.0% | |
| AGACCCGAACAGATGTATTG+CGG | - | chr6_3:49160241-49160260 | None:intergenic | 45.0% | |
| TTTCACGCGTCATGTCATCA+AGG | + | chr6_3:49160688-49160707 | Msa0953220:CDS | 45.0% | |
| ATGTCATCAAGGCTTTCTCG+TGG | + | chr6_3:49160699-49160718 | Msa0953220:CDS | 45.0% | |
| CTTTCTCGTGGAACCTACAA+TGG | + | chr6_3:49160711-49160730 | Msa0953220:CDS | 45.0% | |
| GATGCTACCATTACATTGGC+TGG | + | chr6_3:49160780-49160799 | Msa0953220:CDS | 45.0% | |
| !!! | CTGGTTTTTTGGGTCAGAGT+AGG | + | chr6_3:49160799-49160818 | Msa0953220:CDS | 45.0% |
| AATGACGAGTGAAGGAAGCA+AGG | - | chr6_3:49160838-49160857 | None:intergenic | 45.0% | |
| GTTAGGGTTAGGATGAGTTG+AGG | + | chr6_3:49161136-49161155 | Msa0953220:three_prime_UTR | 45.0% | |
| GAGGTCTCAGATTCAAACAC+AGG | + | chr6_3:49161251-49161270 | Msa0953220:three_prime_UTR | 45.0% | |
| !! | GTTAAAAAAAAAAAAAAAAA+AGG | - | chr6_3:49156159-49156178 | None:intergenic | 5.0% |
| ! | TGATACTGGTATCTGGCTCG+AGG | + | chr6_3:49155505-49155524 | Msa0953220:five_prime_UTR | 50.0% |
| ATGGTAAACCGGAGTTCTCC+TGG | + | chr6_3:49155869-49155888 | Msa0953220:intron | 50.0% | |
| TGGTAAACCGGAGTTCTCCT+GGG | + | chr6_3:49155870-49155889 | Msa0953220:intron | 50.0% | |
| !! | CAATTTTGAGAGGCCGGAGA+GGG | + | chr6_3:49156041-49156060 | Msa0953220:intron | 50.0% |
| !! | AATTTTGAGAGGCCGGAGAG+GGG | + | chr6_3:49156042-49156061 | Msa0953220:intron | 50.0% |
| GGGAGAACTACGGTTTACCA+TGG | - | chr6_3:49156068-49156087 | None:intergenic | 50.0% | |
| TGGTAAACCGTAGTTCTCCC+TGG | + | chr6_3:49156068-49156087 | Msa0953220:intron | 50.0% | |
| CAGGAAGAGATGGTTGCCTT+TGG | + | chr6_3:49156310-49156329 | Msa0953220:intron | 50.0% | |
| AGATCGGCGACATGTTCTCA+AGG | + | chr6_3:49156559-49156578 | Msa0953220:CDS | 50.0% | |
| AAAGCCCTTGTTGCTCCAAC+AGG | - | chr6_3:49156839-49156858 | None:intergenic | 50.0% | |
| ! | GTTGGAGCAACAAGGGCTTT+TGG | + | chr6_3:49156839-49156858 | Msa0953220:CDS | 50.0% |
| ! | AACAAGGGCTTTTGGCAAGC+AGG | + | chr6_3:49156847-49156866 | Msa0953220:CDS | 50.0% |
| GCAAGCAGGATAGCAAAGCT+TGG | + | chr6_3:49156861-49156880 | Msa0953220:CDS | 50.0% | |
| ! | GCTTGAACACTTGTTGCAGC+TGG | - | chr6_3:49157103-49157122 | None:intergenic | 50.0% |
| !! | TAGGGGATAGGTGCTGTTGT+GGG | + | chr6_3:49157260-49157279 | Msa0953220:intron | 50.0% |
| CACGAGCTTCAAGATCGTCA+AGG | + | chr6_3:49157302-49157321 | Msa0953220:CDS | 50.0% | |
| ACAACCAAACTCGCACCAAG+TGG | - | chr6_3:49157428-49157447 | None:intergenic | 50.0% | |
| TTGGTGCGAGTTTGGTTGTG+CGG | + | chr6_3:49157429-49157448 | Msa0953220:intron | 50.0% | |
| ACATGTTCCTCAGAAGGGGT+AGG | - | chr6_3:49157910-49157929 | None:intergenic | 50.0% | |
| ! | AGCAGCGTGGCTCTTTTTGT+CGG | + | chr6_3:49158162-49158181 | Msa0953220:CDS | 50.0% |
| GTTCTGCCAGAGCTGTTAAC+CGG | + | chr6_3:49158628-49158647 | Msa0953220:CDS | 50.0% | |
| ! | ATAACGCCGGTTAACAGCTC+TGG | - | chr6_3:49158637-49158656 | None:intergenic | 50.0% |
| ! | GCTTGCATGCGGATTTTGAG+TGG | - | chr6_3:49158675-49158694 | None:intergenic | 50.0% |
| AACCAGCTGATGCTTGCATG+CGG | - | chr6_3:49158686-49158705 | None:intergenic | 50.0% | |
| TAGTGCTAGTGCTCTCGGAA+TGG | + | chr6_3:49158710-49158729 | Msa0953220:CDS | 50.0% | |
| !! | GGTGGGTTATGGCTATTGCT+TGG | + | chr6_3:49158814-49158833 | Msa0953220:CDS | 50.0% |
| GGTTATGGCTATTGCTTGGC+TGG | + | chr6_3:49158818-49158837 | Msa0953220:CDS | 50.0% | |
| TCTCCCTGTGCAGTAGACAA+TGG | + | chr6_3:49159097-49159116 | Msa0953220:intron | 50.0% | |
| GCACCATTGTCTACTGCACA+GGG | - | chr6_3:49159103-49159122 | None:intergenic | 50.0% | |
| TGCACCATTGTCTACTGCAC+AGG | - | chr6_3:49159104-49159123 | None:intergenic | 50.0% | |
| ! | TGATAGTGAGGAAGCTCCAG+AGG | + | chr6_3:49159231-49159250 | Msa0953220:CDS | 50.0% |
| GCCGATCCAATTGAATTGGC+CGG | - | chr6_3:49159268-49159287 | None:intergenic | 50.0% | |
| ! | GCGGTTTTTCTTGCTTGCCT+TGG | + | chr6_3:49159703-49159722 | Msa0953220:CDS | 50.0% |
| CAGGAAGAACTGTCAAGCCA+AGG | - | chr6_3:49159723-49159742 | None:intergenic | 50.0% | |
| GAGCCGCAATACATCTGTTC+GGG | + | chr6_3:49160235-49160254 | Msa0953220:CDS | 50.0% | |
| TCTCGTGGAACCTACAATGG+CGG | + | chr6_3:49160714-49160733 | Msa0953220:CDS | 50.0% | |
| AGACAGAAGACCGCCATTGT+AGG | - | chr6_3:49160727-49160746 | None:intergenic | 50.0% | |
| TCTAGCAATTGTTCCGGCCT+CGG | - | chr6_3:49160751-49160770 | None:intergenic | 50.0% | |
| TCGAGGACCGACTAATCCGA+AGG | + | chr6_3:49155522-49155541 | Msa0953220:five_prime_UTR | 55.0% | |
| CGAGGACCGACTAATCCGAA+GGG | + | chr6_3:49155523-49155542 | Msa0953220:five_prime_UTR | 55.0% | |
| AAACCGGAGTTCTCCTGGGA+TGG | + | chr6_3:49155874-49155893 | Msa0953220:intron | 55.0% | |
| AACCGGAGTTCTCCTGGGAT+GGG | + | chr6_3:49155875-49155894 | Msa0953220:intron | 55.0% | |
| ATCCCATCCCAGGAGAACTC+CGG | - | chr6_3:49155880-49155899 | None:intergenic | 55.0% | |
| !! | GCAATTTTGAGAGGCCGGAG+AGG | + | chr6_3:49156040-49156059 | Msa0953220:intron | 55.0% |
| !! | GTAGGGGATAGGTGCTGTTG+TGG | + | chr6_3:49157259-49157278 | Msa0953220:intron | 55.0% |
| TCAGCCTGCTCTTCCTCTTC+AGG | + | chr6_3:49157346-49157365 | Msa0953220:CDS | 55.0% | |
| GTTCCTCAGAAGGGGTAGGA+AGG | - | chr6_3:49157906-49157925 | None:intergenic | 55.0% | |
| !! | AAGCCTTGGTGCTGCACCAA+CGG | + | chr6_3:49158038-49158057 | Msa0953220:CDS | 55.0% |
| AAACCGTTGGTGCAGCACCA+AGG | - | chr6_3:49158044-49158063 | None:intergenic | 55.0% | |
| GCCTCTTGTATTCAGCAGCG+TGG | + | chr6_3:49158149-49158168 | Msa0953220:CDS | 55.0% | |
| GCCACGCTGCTGAATACAAG+AGG | - | chr6_3:49158153-49158172 | None:intergenic | 55.0% | |
| ATCCGCATGCAAGCATCAGC+TGG | + | chr6_3:49158681-49158700 | Msa0953220:CDS | 55.0% | |
| AGTGCTCTCGGAATGGCATG+TGG | + | chr6_3:49158717-49158736 | Msa0953220:CDS | 55.0% | |
| !! | TACCTTGCCAGGGTGGGTTA+TGG | + | chr6_3:49158803-49158822 | Msa0953220:CDS | 55.0% |
| GCAATAGCCATAACCCACCC+TGG | - | chr6_3:49158813-49158832 | None:intergenic | 55.0% | |
| TCCAGAGGAATCTCGCCTTC+CGG | + | chr6_3:49159246-49159265 | Msa0953220:CDS | 55.0% | |
| CGCCTTCCGGCCAATTCAAT+TGG | + | chr6_3:49159259-49159278 | Msa0953220:CDS | 55.0% | |
| CTGGTCAACCAGCACAGTTG+CGG | + | chr6_3:49159684-49159703 | Msa0953220:CDS | 55.0% | |
| GACCGAGAAGAGCGGACAAA+CGG | + | chr6_3:49159860-49159879 | Msa0953220:intron | 55.0% | |
| GGTTTACCATGGCCCCTCTC+CGG | - | chr6_3:49156057-49156076 | None:intergenic | 60.0% | |
| GTGCGAGTTTGGTTGTGCGG+TGG | + | chr6_3:49157432-49157451 | Msa0953220:intron | 60.0% | |
| CGACCTTCCTACCCCTTCTG+AGG | + | chr6_3:49157900-49157919 | Msa0953220:CDS | 60.0% | |
| ! | GGTGCTGCACCAACGGTTTG+TGG | + | chr6_3:49158045-49158064 | Msa0953220:CDS | 60.0% |
| GCATGTGGTCCCGCATTAGC+TGG | + | chr6_3:49158732-49158751 | Msa0953220:CDS | 60.0% | |
| AGCCATAACCCACCCTGGCA+AGG | - | chr6_3:49158808-49158827 | None:intergenic | 60.0% | |
| GGCCGTTTGTCCGCTCTTCT+CGG | - | chr6_3:49159865-49159884 | None:intergenic | 60.0% | |
| TGGCGGTCTTCTGTCTACCG+AGG | + | chr6_3:49160731-49160750 | Msa0953220:CDS | 60.0% | |
| GGTCTTCTGTCTACCGAGGC+CGG | + | chr6_3:49160735-49160754 | Msa0953220:CDS | 60.0% | |
| TGGGGCGATGGCTGTTGCAC+AGG | + | chr6_3:49158077-49158096 | Msa0953220:CDS | 65.0% | |
| GCCGGAAGGCGAGATTCCTC+TGG | - | chr6_3:49159250-49159269 | None:intergenic | 65.0% | |
| GAGAGGCCGGAGAGGGGCCA+TGG | + | chr6_3:49156048-49156067 | Msa0953220:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 49155386 | 49161327 | 49155386 | ID=Msa0953220;Name=Msa0953220 |
| chr6_3 | mRNA | 49155386 | 49161327 | 49155386 | ID=Msa0953220-mRNA-1;Parent=Msa0953220;Name=Msa0953220-mRNA-1;_AED=0.09;_eAED=0.09;_QI=409|1|1|1|0.81|0.75|12|419|705 |
| chr6_3 | exon | 49155386 | 49155466 | 49155386 | ID=Msa0953220-mRNA-1:exon:10741;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49155502 | 49155823 | 49155502 | ID=Msa0953220-mRNA-1:exon:10742;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49156313 | 49156371 | 49156313 | ID=Msa0953220-mRNA-1:exon:10743;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49156487 | 49156607 | 49156487 | ID=Msa0953220-mRNA-1:exon:10744;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49156816 | 49157127 | 49156816 | ID=Msa0953220-mRNA-1:exon:10745;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49157263 | 49157367 | 49157263 | ID=Msa0953220-mRNA-1:exon:10746;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49157802 | 49158256 | 49157802 | ID=Msa0953220-mRNA-1:exon:10747;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49158623 | 49158924 | 49158623 | ID=Msa0953220-mRNA-1:exon:10748;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49159110 | 49159315 | 49159110 | ID=Msa0953220-mRNA-1:exon:10749;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49159598 | 49159788 | 49159598 | ID=Msa0953220-mRNA-1:exon:10750;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49160159 | 49160292 | 49160159 | ID=Msa0953220-mRNA-1:exon:10751;Parent=Msa0953220-mRNA-1 |
| chr6_3 | exon | 49160670 | 49161327 | 49160670 | ID=Msa0953220-mRNA-1:exon:10752;Parent=Msa0953220-mRNA-1 |
| chr6_3 | five_prime_UTR | 49155386 | 49155466 | 49155386 | ID=Msa0953220-mRNA-1:five_prime_utr;Parent=Msa0953220-mRNA-1 |
| chr6_3 | five_prime_UTR | 49155502 | 49155823 | 49155502 | ID=Msa0953220-mRNA-1:five_prime_utr;Parent=Msa0953220-mRNA-1 |
| chr6_3 | five_prime_UTR | 49156313 | 49156318 | 49156313 | ID=Msa0953220-mRNA-1:five_prime_utr;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49156319 | 49156371 | 49156319 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49156487 | 49156607 | 49156487 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49156816 | 49157127 | 49156816 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49157263 | 49157367 | 49157263 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49157802 | 49158256 | 49157802 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49158623 | 49158924 | 49158623 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49159110 | 49159315 | 49159110 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49159598 | 49159788 | 49159598 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49160159 | 49160292 | 49160159 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | CDS | 49160670 | 49160908 | 49160670 | ID=Msa0953220-mRNA-1:cds;Parent=Msa0953220-mRNA-1 |
| chr6_3 | three_prime_UTR | 49160909 | 49161327 | 49160909 | ID=Msa0953220-mRNA-1:three_prime_utr;Parent=Msa0953220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
