Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958910 | A2Q2L3 | 60.526 | 152 | 29 | 2 | 2 | 141 | 93 | 225 | 1.17e-48 | 167 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229590 | Msa0958910 | 0.809420 | 1.908998e-50 | -8.615850e-47 |
| Msa0958910 | Msa1383100 | 0.800500 | 1.400199e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958910 | MtrunA17_Chr6g0476361 | 73.626 | 91 | 15 | 1 | 32 | 113 | 92 | 182 | 8.41e-36 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGGTTGGGCACATCTTC+TGG | 0.232073 | 6_3:+75026931 | Msa0958910:CDS |
| CATTGTACGTGATTAGAAAT+TGG | 0.263505 | 6_3:+75026095 | Msa0958910:CDS |
| GATCAGTTTATCGTCTTTCC+TGG | 0.328045 | 6_3:+75026775 | Msa0958910:CDS |
| ATATCATCTTGATAGAGTTT+TGG | 0.333367 | 6_3:+75026577 | Msa0958910:CDS |
| TTTGAGTGTCCGGTGTTTGC+TGG | 0.348550 | 6_3:+75026070 | Msa0958910:CDS |
| ATGTGCCCAACCTTTCCTTC+TGG | 0.357139 | 6_3:-75026924 | None:intergenic |
| GAATCCACTTAAGAACTAAC+TGG | 0.409196 | 6_3:-75026842 | None:intergenic |
| TGCTGATTGGAGGTCGTCAA+TGG | 0.428212 | 6_3:+75026881 | Msa0958910:CDS |
| ACATCTTCTGGATCAGTTGA+AGG | 0.444711 | 6_3:+75026943 | Msa0958910:CDS |
| GTGTCCAGTTAGTTCTTAAG+TGG | 0.450980 | 6_3:+75026838 | Msa0958910:CDS |
| TTGGAGGTCGTCAATGGCTT+GGG | 0.454685 | 6_3:+75026887 | Msa0958910:CDS |
| CTGCCTGAATTACACAGAAA+TGG | 0.459154 | 6_3:-75026696 | None:intergenic |
| ATTGGAGGTCGTCAATGGCT+TGG | 0.460063 | 6_3:+75026886 | Msa0958910:CDS |
| TTGGAGTATTCTGCAGCGAC+AGG | 0.476915 | 6_3:+75026596 | Msa0958910:CDS |
| TGATGTACAAAAGCCGCATC+AGG | 0.481409 | 6_3:+75026721 | Msa0958910:CDS |
| TACGTGATTAGAAATTGGCT+TGG | 0.487139 | 6_3:+75026100 | Msa0958910:CDS |
| CAAATCAATAGTGATGCGTC+AGG | 0.491480 | 6_3:+75025660 | None:intergenic |
| TCTCGGCTGTGTGGAATCGC+AGG | 0.495413 | 6_3:+75026502 | Msa0958910:CDS |
| GAATCGCAGGTGTGAGGTTG+AGG | 0.497076 | 6_3:+75026515 | Msa0958910:CDS |
| GGCGTTCCAGAAGGAAAGGT+TGG | 0.500561 | 6_3:+75026918 | Msa0958910:CDS |
| AAAGACGATAAACTGATCTC+TGG | 0.503267 | 6_3:-75026770 | None:intergenic |
| ACACCGGACACTCAAAGAAA+AGG | 0.525163 | 6_3:-75026063 | None:intergenic |
| GCGTTCCAGAAGGAAAGGTT+GGG | 0.531616 | 6_3:+75026919 | Msa0958910:CDS |
| GACGATAAACTGATCTCTGG+TGG | 0.548424 | 6_3:-75026767 | None:intergenic |
| GTGAATCCCAGAGCTTGTCT+CGG | 0.568498 | 6_3:+75026485 | Msa0958910:intron |
| ACGATAAACTGATCTCTGGT+GGG | 0.576745 | 6_3:-75026766 | None:intergenic |
| GATATCGTCGGCGTTCCAGA+AGG | 0.585267 | 6_3:+75026909 | Msa0958910:CDS |
| CGTCGGCGTTCCAGAAGGAA+AGG | 0.589836 | 6_3:+75026914 | Msa0958910:CDS |
| TGTATTATTCCTGTGTGCTG+AGG | 0.592444 | 6_3:+75026671 | Msa0958910:CDS |
| CAGAGCTTGTCTCGGCTGTG+TGG | 0.600463 | 6_3:+75026493 | Msa0958910:intron |
| GTTTGGAGATGGGTCAGACT+CGG | 0.632477 | 6_3:+75026550 | Msa0958910:CDS |
| GTTGTTTAGTTCGGGGAGTG+TGG | 0.632869 | 6_3:+75026019 | Msa0958910:intron |
| CAGTCACAACAAACCTGATG+CGG | 0.645481 | 6_3:-75026734 | None:intergenic |
| TCAATGGCTTGGGATATCGT+CGG | 0.649700 | 6_3:+75026897 | Msa0958910:CDS |
| TACAATGTACCAGCAAACAC+CGG | 0.654053 | 6_3:-75026079 | None:intergenic |
| GAAATGGAACCTCAGCACAC+AGG | 0.668649 | 6_3:-75026680 | None:intergenic |
| TGTGTGGAATCGCAGGTGTG+AGG | 0.671834 | 6_3:+75026509 | Msa0958910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTTGAATCAAATACTTA+AGG | - | chr6_3:75025954-75025973 | None:intergenic | 20.0% |
| !! | TGACAAATTATTCAAAAACA+AGG | + | chr6_3:75026261-75026280 | Msa0958910:intron | 20.0% |
| !! | AACTTTGAATCAAATACTTA+AGG | - | chr6_3:75025954-75025973 | None:intergenic | 20.0% |
| !! | TGACAAATTATTCAAAAACA+AGG | + | chr6_3:75026261-75026280 | Msa0958910:intron | 20.0% |
| ! | CTTGGAAAATATTGTTGAAT+CGG | + | chr6_3:75026291-75026310 | Msa0958910:intron | 25.0% |
| !! | ATATCATCTTGATAGAGTTT+TGG | + | chr6_3:75026577-75026596 | Msa0958910:CDS | 25.0% |
| ! | AAACAAATTATCTAACTTCC+AGG | - | chr6_3:75026796-75026815 | None:intergenic | 25.0% |
| !!! | AGTTAGATAATTTGTTTCAG+AGG | + | chr6_3:75026799-75026818 | Msa0958910:intron | 25.0% |
| ! | CTTGGAAAATATTGTTGAAT+CGG | + | chr6_3:75026291-75026310 | Msa0958910:intron | 25.0% |
| !! | ATATCATCTTGATAGAGTTT+TGG | + | chr6_3:75026577-75026596 | Msa0958910:CDS | 25.0% |
| ! | AAACAAATTATCTAACTTCC+AGG | - | chr6_3:75026796-75026815 | None:intergenic | 25.0% |
| !!! | AGTTAGATAATTTGTTTCAG+AGG | + | chr6_3:75026799-75026818 | Msa0958910:intron | 25.0% |
| CATCAGTATCTAGAGAAAAT+GGG | - | chr6_3:75025726-75025745 | None:intergenic | 30.0% | |
| TCATCAGTATCTAGAGAAAA+TGG | - | chr6_3:75025727-75025746 | None:intergenic | 30.0% | |
| AAAATACAAGACCAAGTCAA+GGG | - | chr6_3:75025792-75025811 | None:intergenic | 30.0% | |
| CTTCTACTAAGAAAACTTCA+TGG | + | chr6_3:75025885-75025904 | Msa0958910:intron | 30.0% | |
| ! | TGCTTAAGCTTTATCAGAAA+TGG | - | chr6_3:75025915-75025934 | None:intergenic | 30.0% |
| CATTGTACGTGATTAGAAAT+TGG | + | chr6_3:75026095-75026114 | Msa0958910:CDS | 30.0% | |
| TGGAGTACAATCTGAATTAA+TGG | + | chr6_3:75026459-75026478 | Msa0958910:intron | 30.0% | |
| !!! | CTCTGTTTTTTTTTGCTGAT+TGG | + | chr6_3:75026868-75026887 | Msa0958910:CDS | 30.0% |
| !!! | TGTTTTTTTTTGCTGATTGG+AGG | + | chr6_3:75026871-75026890 | Msa0958910:CDS | 30.0% |
| CATCAGTATCTAGAGAAAAT+GGG | - | chr6_3:75025726-75025745 | None:intergenic | 30.0% | |
| TCATCAGTATCTAGAGAAAA+TGG | - | chr6_3:75025727-75025746 | None:intergenic | 30.0% | |
| AAAATACAAGACCAAGTCAA+GGG | - | chr6_3:75025792-75025811 | None:intergenic | 30.0% | |
| CTTCTACTAAGAAAACTTCA+TGG | + | chr6_3:75025885-75025904 | Msa0958910:intron | 30.0% | |
| ! | TGCTTAAGCTTTATCAGAAA+TGG | - | chr6_3:75025915-75025934 | None:intergenic | 30.0% |
| CATTGTACGTGATTAGAAAT+TGG | + | chr6_3:75026095-75026114 | Msa0958910:CDS | 30.0% | |
| TGGAGTACAATCTGAATTAA+TGG | + | chr6_3:75026459-75026478 | Msa0958910:intron | 30.0% | |
| !!! | CTCTGTTTTTTTTTGCTGAT+TGG | + | chr6_3:75026868-75026887 | Msa0958910:CDS | 30.0% |
| !!! | TGTTTTTTTTTGCTGATTGG+AGG | + | chr6_3:75026871-75026890 | Msa0958910:CDS | 30.0% |
| AAATACAAGACCAAGTCAAG+GGG | - | chr6_3:75025791-75025810 | None:intergenic | 35.0% | |
| CAAAATACAAGACCAAGTCA+AGG | - | chr6_3:75025793-75025812 | None:intergenic | 35.0% | |
| !!! | AGCTTAAGCATTTTTTGCGT+TGG | + | chr6_3:75025925-75025944 | Msa0958910:intron | 35.0% |
| ! | TAATACTGCAGAAGCCTTTT+TGG | + | chr6_3:75025988-75026007 | Msa0958910:intron | 35.0% |
| AACAACTCATTGTGCCAAAA+AGG | - | chr6_3:75026005-75026024 | None:intergenic | 35.0% | |
| GCACAATGAGTTGTTTAGTT+CGG | + | chr6_3:75026010-75026029 | Msa0958910:intron | 35.0% | |
| ! | CACAATGAGTTGTTTAGTTC+GGG | + | chr6_3:75026011-75026030 | Msa0958910:intron | 35.0% |
| ! | ACAATGAGTTGTTTAGTTCG+GGG | + | chr6_3:75026012-75026031 | Msa0958910:intron | 35.0% |
| TACGTGATTAGAAATTGGCT+TGG | + | chr6_3:75026100-75026119 | Msa0958910:CDS | 35.0% | |
| ! | CCTACAGCTTTTCAAAATGA+CGG | + | chr6_3:75026127-75026146 | Msa0958910:CDS | 35.0% |
| CCTTGAGATTGATCTAAATG+AGG | - | chr6_3:75026157-75026176 | None:intergenic | 35.0% | |
| CCTCATTTAGATCAATCTCA+AGG | + | chr6_3:75026154-75026173 | Msa0958910:intron | 35.0% | |
| GATCAATCTCAAGGTTTGAT+CGG | + | chr6_3:75026163-75026182 | Msa0958910:intron | 35.0% | |
| ! | CAAAAACAAGGAAGTTTGCT+TGG | + | chr6_3:75026273-75026292 | Msa0958910:intron | 35.0% |
| ! | GACAGATTCAGATGTTTTAC+AGG | + | chr6_3:75026618-75026637 | Msa0958910:CDS | 35.0% |
| GTTCCATTTCTGTGTAATTC+AGG | + | chr6_3:75026693-75026712 | Msa0958910:intron | 35.0% | |
| AAAGACGATAAACTGATCTC+TGG | - | chr6_3:75026773-75026792 | None:intergenic | 35.0% | |
| !! | CAGAGGTTACTTACTTTTGA+CGG | + | chr6_3:75026816-75026835 | Msa0958910:intron | 35.0% |
| GAATCCACTTAAGAACTAAC+TGG | - | chr6_3:75026845-75026864 | None:intergenic | 35.0% | |
| AAATACAAGACCAAGTCAAG+GGG | - | chr6_3:75025791-75025810 | None:intergenic | 35.0% | |
| CAAAATACAAGACCAAGTCA+AGG | - | chr6_3:75025793-75025812 | None:intergenic | 35.0% | |
| !!! | AGCTTAAGCATTTTTTGCGT+TGG | + | chr6_3:75025925-75025944 | Msa0958910:intron | 35.0% |
| ! | TAATACTGCAGAAGCCTTTT+TGG | + | chr6_3:75025988-75026007 | Msa0958910:intron | 35.0% |
| AACAACTCATTGTGCCAAAA+AGG | - | chr6_3:75026005-75026024 | None:intergenic | 35.0% | |
| GCACAATGAGTTGTTTAGTT+CGG | + | chr6_3:75026010-75026029 | Msa0958910:intron | 35.0% | |
| ! | CACAATGAGTTGTTTAGTTC+GGG | + | chr6_3:75026011-75026030 | Msa0958910:intron | 35.0% |
| ! | ACAATGAGTTGTTTAGTTCG+GGG | + | chr6_3:75026012-75026031 | Msa0958910:intron | 35.0% |
| TACGTGATTAGAAATTGGCT+TGG | + | chr6_3:75026100-75026119 | Msa0958910:CDS | 35.0% | |
| ! | CCTACAGCTTTTCAAAATGA+CGG | + | chr6_3:75026127-75026146 | Msa0958910:CDS | 35.0% |
| CCTTGAGATTGATCTAAATG+AGG | - | chr6_3:75026157-75026176 | None:intergenic | 35.0% | |
| CCTCATTTAGATCAATCTCA+AGG | + | chr6_3:75026154-75026173 | Msa0958910:intron | 35.0% | |
| GATCAATCTCAAGGTTTGAT+CGG | + | chr6_3:75026163-75026182 | Msa0958910:intron | 35.0% | |
| ! | CAAAAACAAGGAAGTTTGCT+TGG | + | chr6_3:75026273-75026292 | Msa0958910:intron | 35.0% |
| ! | GACAGATTCAGATGTTTTAC+AGG | + | chr6_3:75026618-75026637 | Msa0958910:CDS | 35.0% |
| GTTCCATTTCTGTGTAATTC+AGG | + | chr6_3:75026693-75026712 | Msa0958910:intron | 35.0% | |
| AAAGACGATAAACTGATCTC+TGG | - | chr6_3:75026773-75026792 | None:intergenic | 35.0% | |
| !! | CAGAGGTTACTTACTTTTGA+CGG | + | chr6_3:75026816-75026835 | Msa0958910:intron | 35.0% |
| GAATCCACTTAAGAACTAAC+TGG | - | chr6_3:75026845-75026864 | None:intergenic | 35.0% | |
| CAGGTATGTTGTTGAGATCT+AGG | + | chr6_3:75025679-75025698 | Msa0958910:intron | 40.0% | |
| TAAATTGAGTCCCCTTGACT+TGG | + | chr6_3:75025778-75025797 | Msa0958910:intron | 40.0% | |
| ! | TCACCTTTTCTTTGAGTGTC+CGG | + | chr6_3:75026060-75026079 | Msa0958910:CDS | 40.0% |
| TACAATGTACCAGCAAACAC+CGG | - | chr6_3:75026082-75026101 | None:intergenic | 40.0% | |
| !! | CCGTCATTTTGAAAAGCTGT+AGG | - | chr6_3:75026130-75026149 | None:intergenic | 40.0% |
| TCTCAAGGTTTGATCGGTAA+TGG | + | chr6_3:75026169-75026188 | Msa0958910:intron | 40.0% | |
| CTCAAGGTTTGATCGGTAAT+GGG | + | chr6_3:75026170-75026189 | Msa0958910:intron | 40.0% | |
| !! | CTAGTAGACTTGGTGTGATT+TGG | + | chr6_3:75026203-75026222 | Msa0958910:intron | 40.0% |
| !! | TGATTTGGTTTGCCTGCATT+TGG | + | chr6_3:75026218-75026237 | Msa0958910:intron | 40.0% |
| ! | TTGCCTGCATTTGGAGTATT+TGG | + | chr6_3:75026227-75026246 | Msa0958910:intron | 40.0% |
| CTTCCAAATACTCCAAATGC+AGG | - | chr6_3:75026233-75026252 | None:intergenic | 40.0% | |
| ! | CTGCATTTGGAGTATTTGGA+AGG | + | chr6_3:75026231-75026250 | Msa0958910:intron | 40.0% |
| ! | TTTGGAGTATTTGGAAGGCA+AGG | + | chr6_3:75026236-75026255 | Msa0958910:intron | 40.0% |
| CTTGAATCTCAGTCAATTCC+AGG | - | chr6_3:75026429-75026448 | None:intergenic | 40.0% | |
| TGACTGAGATTCAAGACAAC+TGG | + | chr6_3:75026434-75026453 | Msa0958910:intron | 40.0% | |
| ! | TGTTTTACGCGTTTGGAGAT+GGG | + | chr6_3:75026540-75026559 | Msa0958910:CDS | 40.0% |
| TGTATTATTCCTGTGTGCTG+AGG | + | chr6_3:75026671-75026690 | Msa0958910:CDS | 40.0% | |
| CTGCCTGAATTACACAGAAA+TGG | - | chr6_3:75026699-75026718 | None:intergenic | 40.0% | |
| CATTTCTGTGTAATTCAGGC+AGG | + | chr6_3:75026697-75026716 | Msa0958910:intron | 40.0% | |
| ACGATAAACTGATCTCTGGT+GGG | - | chr6_3:75026769-75026788 | None:intergenic | 40.0% | |
| GATCAGTTTATCGTCTTTCC+TGG | + | chr6_3:75026775-75026794 | Msa0958910:CDS | 40.0% | |
| ! | GTGTCCAGTTAGTTCTTAAG+TGG | + | chr6_3:75026838-75026857 | Msa0958910:CDS | 40.0% |
| CAGGTATGTTGTTGAGATCT+AGG | + | chr6_3:75025679-75025698 | Msa0958910:intron | 40.0% | |
| TAAATTGAGTCCCCTTGACT+TGG | + | chr6_3:75025778-75025797 | Msa0958910:intron | 40.0% | |
| ! | TCACCTTTTCTTTGAGTGTC+CGG | + | chr6_3:75026060-75026079 | Msa0958910:CDS | 40.0% |
| TACAATGTACCAGCAAACAC+CGG | - | chr6_3:75026082-75026101 | None:intergenic | 40.0% | |
| !! | CCGTCATTTTGAAAAGCTGT+AGG | - | chr6_3:75026130-75026149 | None:intergenic | 40.0% |
| TCTCAAGGTTTGATCGGTAA+TGG | + | chr6_3:75026169-75026188 | Msa0958910:intron | 40.0% | |
| CTCAAGGTTTGATCGGTAAT+GGG | + | chr6_3:75026170-75026189 | Msa0958910:intron | 40.0% | |
| !! | CTAGTAGACTTGGTGTGATT+TGG | + | chr6_3:75026203-75026222 | Msa0958910:intron | 40.0% |
| !! | TGATTTGGTTTGCCTGCATT+TGG | + | chr6_3:75026218-75026237 | Msa0958910:intron | 40.0% |
| ! | TTGCCTGCATTTGGAGTATT+TGG | + | chr6_3:75026227-75026246 | Msa0958910:intron | 40.0% |
| CTTCCAAATACTCCAAATGC+AGG | - | chr6_3:75026233-75026252 | None:intergenic | 40.0% | |
| ! | CTGCATTTGGAGTATTTGGA+AGG | + | chr6_3:75026231-75026250 | Msa0958910:intron | 40.0% |
| ! | TTTGGAGTATTTGGAAGGCA+AGG | + | chr6_3:75026236-75026255 | Msa0958910:intron | 40.0% |
| CTTGAATCTCAGTCAATTCC+AGG | - | chr6_3:75026429-75026448 | None:intergenic | 40.0% | |
| TGACTGAGATTCAAGACAAC+TGG | + | chr6_3:75026434-75026453 | Msa0958910:intron | 40.0% | |
| ! | TGTTTTACGCGTTTGGAGAT+GGG | + | chr6_3:75026540-75026559 | Msa0958910:CDS | 40.0% |
| TGTATTATTCCTGTGTGCTG+AGG | + | chr6_3:75026671-75026690 | Msa0958910:CDS | 40.0% | |
| CTGCCTGAATTACACAGAAA+TGG | - | chr6_3:75026699-75026718 | None:intergenic | 40.0% | |
| CATTTCTGTGTAATTCAGGC+AGG | + | chr6_3:75026697-75026716 | Msa0958910:intron | 40.0% | |
| ACGATAAACTGATCTCTGGT+GGG | - | chr6_3:75026769-75026788 | None:intergenic | 40.0% | |
| GATCAGTTTATCGTCTTTCC+TGG | + | chr6_3:75026775-75026794 | Msa0958910:CDS | 40.0% | |
| ! | GTGTCCAGTTAGTTCTTAAG+TGG | + | chr6_3:75026838-75026857 | Msa0958910:CDS | 40.0% |
| ACACCGGACACTCAAAGAAA+AGG | - | chr6_3:75026066-75026085 | None:intergenic | 45.0% | |
| AGAGTCTTCGCTAGTAGACT+TGG | + | chr6_3:75026193-75026212 | Msa0958910:intron | 45.0% | |
| GAGATTCAAGACAACTGGCA+TGG | + | chr6_3:75026439-75026458 | Msa0958910:intron | 45.0% | |
| ! | TGAGGTGTGTTTTACGCGTT+TGG | + | chr6_3:75026533-75026552 | Msa0958910:CDS | 45.0% |
| ! | GTGTTTTACGCGTTTGGAGA+TGG | + | chr6_3:75026539-75026558 | Msa0958910:CDS | 45.0% |
| TGATGTACAAAAGCCGCATC+AGG | + | chr6_3:75026721-75026740 | Msa0958910:CDS | 45.0% | |
| CAGTCACAACAAACCTGATG+CGG | - | chr6_3:75026737-75026756 | None:intergenic | 45.0% | |
| GACGATAAACTGATCTCTGG+TGG | - | chr6_3:75026770-75026789 | None:intergenic | 45.0% | |
| ! | TCAATGGCTTGGGATATCGT+CGG | + | chr6_3:75026897-75026916 | Msa0958910:CDS | 45.0% |
| ACACCGGACACTCAAAGAAA+AGG | - | chr6_3:75026066-75026085 | None:intergenic | 45.0% | |
| AGAGTCTTCGCTAGTAGACT+TGG | + | chr6_3:75026193-75026212 | Msa0958910:intron | 45.0% | |
| GAGATTCAAGACAACTGGCA+TGG | + | chr6_3:75026439-75026458 | Msa0958910:intron | 45.0% | |
| ! | TGAGGTGTGTTTTACGCGTT+TGG | + | chr6_3:75026533-75026552 | Msa0958910:CDS | 45.0% |
| ! | GTGTTTTACGCGTTTGGAGA+TGG | + | chr6_3:75026539-75026558 | Msa0958910:CDS | 45.0% |
| TGATGTACAAAAGCCGCATC+AGG | + | chr6_3:75026721-75026740 | Msa0958910:CDS | 45.0% | |
| CAGTCACAACAAACCTGATG+CGG | - | chr6_3:75026737-75026756 | None:intergenic | 45.0% | |
| GACGATAAACTGATCTCTGG+TGG | - | chr6_3:75026770-75026789 | None:intergenic | 45.0% | |
| ! | TCAATGGCTTGGGATATCGT+CGG | + | chr6_3:75026897-75026916 | Msa0958910:CDS | 45.0% |
| ! | GTTGTTTAGTTCGGGGAGTG+TGG | + | chr6_3:75026019-75026038 | Msa0958910:intron | 50.0% |
| TTTGAGTGTCCGGTGTTTGC+TGG | + | chr6_3:75026070-75026089 | Msa0958910:CDS | 50.0% | |
| GTGAATCCCAGAGCTTGTCT+CGG | + | chr6_3:75026485-75026504 | Msa0958910:intron | 50.0% | |
| GTTTGGAGATGGGTCAGACT+CGG | + | chr6_3:75026550-75026569 | Msa0958910:CDS | 50.0% | |
| ! | TTGGAGTATTCTGCAGCGAC+AGG | + | chr6_3:75026596-75026615 | Msa0958910:CDS | 50.0% |
| GAAATGGAACCTCAGCACAC+AGG | - | chr6_3:75026683-75026702 | None:intergenic | 50.0% | |
| ! | TGCTGATTGGAGGTCGTCAA+TGG | + | chr6_3:75026881-75026900 | Msa0958910:CDS | 50.0% |
| ATTGGAGGTCGTCAATGGCT+TGG | + | chr6_3:75026886-75026905 | Msa0958910:CDS | 50.0% | |
| TTGGAGGTCGTCAATGGCTT+GGG | + | chr6_3:75026887-75026906 | Msa0958910:CDS | 50.0% | |
| GCGTTCCAGAAGGAAAGGTT+GGG | + | chr6_3:75026919-75026938 | Msa0958910:CDS | 50.0% | |
| ATGTGCCCAACCTTTCCTTC+TGG | - | chr6_3:75026927-75026946 | None:intergenic | 50.0% | |
| GAAAGGTTGGGCACATCTTC+TGG | + | chr6_3:75026931-75026950 | Msa0958910:CDS | 50.0% | |
| ! | GTTGTTTAGTTCGGGGAGTG+TGG | + | chr6_3:75026019-75026038 | Msa0958910:intron | 50.0% |
| TTTGAGTGTCCGGTGTTTGC+TGG | + | chr6_3:75026070-75026089 | Msa0958910:CDS | 50.0% | |
| GTGAATCCCAGAGCTTGTCT+CGG | + | chr6_3:75026485-75026504 | Msa0958910:intron | 50.0% | |
| GTTTGGAGATGGGTCAGACT+CGG | + | chr6_3:75026550-75026569 | Msa0958910:CDS | 50.0% | |
| ! | TTGGAGTATTCTGCAGCGAC+AGG | + | chr6_3:75026596-75026615 | Msa0958910:CDS | 50.0% |
| GAAATGGAACCTCAGCACAC+AGG | - | chr6_3:75026683-75026702 | None:intergenic | 50.0% | |
| ! | TGCTGATTGGAGGTCGTCAA+TGG | + | chr6_3:75026881-75026900 | Msa0958910:CDS | 50.0% |
| ATTGGAGGTCGTCAATGGCT+TGG | + | chr6_3:75026886-75026905 | Msa0958910:CDS | 50.0% | |
| TTGGAGGTCGTCAATGGCTT+GGG | + | chr6_3:75026887-75026906 | Msa0958910:CDS | 50.0% | |
| GCGTTCCAGAAGGAAAGGTT+GGG | + | chr6_3:75026919-75026938 | Msa0958910:CDS | 50.0% | |
| ATGTGCCCAACCTTTCCTTC+TGG | - | chr6_3:75026927-75026946 | None:intergenic | 50.0% | |
| GAAAGGTTGGGCACATCTTC+TGG | + | chr6_3:75026931-75026950 | Msa0958910:CDS | 50.0% | |
| ACACAGCCGAGACAAGCTCT+GGG | - | chr6_3:75026494-75026513 | None:intergenic | 55.0% | |
| TGTGTGGAATCGCAGGTGTG+AGG | + | chr6_3:75026509-75026528 | Msa0958910:CDS | 55.0% | |
| GAATCGCAGGTGTGAGGTTG+AGG | + | chr6_3:75026515-75026534 | Msa0958910:CDS | 55.0% | |
| GATATCGTCGGCGTTCCAGA+AGG | + | chr6_3:75026909-75026928 | Msa0958910:CDS | 55.0% | |
| GGCGTTCCAGAAGGAAAGGT+TGG | + | chr6_3:75026918-75026937 | Msa0958910:CDS | 55.0% | |
| ACACAGCCGAGACAAGCTCT+GGG | - | chr6_3:75026494-75026513 | None:intergenic | 55.0% | |
| TGTGTGGAATCGCAGGTGTG+AGG | + | chr6_3:75026509-75026528 | Msa0958910:CDS | 55.0% | |
| GAATCGCAGGTGTGAGGTTG+AGG | + | chr6_3:75026515-75026534 | Msa0958910:CDS | 55.0% | |
| GATATCGTCGGCGTTCCAGA+AGG | + | chr6_3:75026909-75026928 | Msa0958910:CDS | 55.0% | |
| GGCGTTCCAGAAGGAAAGGT+TGG | + | chr6_3:75026918-75026937 | Msa0958910:CDS | 55.0% | |
| CACACAGCCGAGACAAGCTC+TGG | - | chr6_3:75026495-75026514 | None:intergenic | 60.0% | |
| CAGAGCTTGTCTCGGCTGTG+TGG | + | chr6_3:75026493-75026512 | Msa0958910:intron | 60.0% | |
| TCTCGGCTGTGTGGAATCGC+AGG | + | chr6_3:75026502-75026521 | Msa0958910:CDS | 60.0% | |
| CGTCGGCGTTCCAGAAGGAA+AGG | + | chr6_3:75026914-75026933 | Msa0958910:CDS | 60.0% | |
| CACACAGCCGAGACAAGCTC+TGG | - | chr6_3:75026495-75026514 | None:intergenic | 60.0% | |
| CAGAGCTTGTCTCGGCTGTG+TGG | + | chr6_3:75026493-75026512 | Msa0958910:intron | 60.0% | |
| TCTCGGCTGTGTGGAATCGC+AGG | + | chr6_3:75026502-75026521 | Msa0958910:CDS | 60.0% | |
| CGTCGGCGTTCCAGAAGGAA+AGG | + | chr6_3:75026914-75026933 | Msa0958910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 75025673 | 75026962 | 75025673 | ID=Msa0958910;Name=Msa0958910 |
| chr6_3 | mRNA | 75025673 | 75026962 | 75025673 | ID=Msa0958910-mRNA-1;Parent=Msa0958910;Name=Msa0958910-mRNA-1;_AED=0.47;_eAED=0.67;_QI=0|0|0|0.8|0.25|0.2|5|0|188 |
| chr6_3 | exon | 75025673 | 75025681 | 75025673 | ID=Msa0958910-mRNA-1:exon:13422;Parent=Msa0958910-mRNA-1 |
| chr6_3 | exon | 75026028 | 75026148 | 75026028 | ID=Msa0958910-mRNA-1:exon:13423;Parent=Msa0958910-mRNA-1 |
| chr6_3 | exon | 75026496 | 75026703 | 75026496 | ID=Msa0958910-mRNA-1:exon:13424;Parent=Msa0958910-mRNA-1 |
| chr6_3 | exon | 75026715 | 75026799 | 75026715 | ID=Msa0958910-mRNA-1:exon:13425;Parent=Msa0958910-mRNA-1 |
| chr6_3 | exon | 75026819 | 75026962 | 75026819 | ID=Msa0958910-mRNA-1:exon:13426;Parent=Msa0958910-mRNA-1 |
| chr6_3 | CDS | 75025673 | 75025681 | 75025673 | ID=Msa0958910-mRNA-1:cds;Parent=Msa0958910-mRNA-1 |
| chr6_3 | CDS | 75026028 | 75026148 | 75026028 | ID=Msa0958910-mRNA-1:cds;Parent=Msa0958910-mRNA-1 |
| chr6_3 | CDS | 75026496 | 75026703 | 75026496 | ID=Msa0958910-mRNA-1:cds;Parent=Msa0958910-mRNA-1 |
| chr6_3 | CDS | 75026715 | 75026799 | 75026715 | ID=Msa0958910-mRNA-1:cds;Parent=Msa0958910-mRNA-1 |
| chr6_3 | CDS | 75026819 | 75026962 | 75026819 | ID=Msa0958910-mRNA-1:cds;Parent=Msa0958910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
