AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0958930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958930 MtrunA17_Chr6g0476521 95.475 221 10 0 1 221 1 221 2.11e-157 434
Msa0958930 MtrunA17_Chr6g0476511 93.665 221 12 1 1 221 1 219 3.41e-153 424
Msa0958930 MtrunA17_Chr1g0188241 69.778 225 59 4 1 221 1 220 4.71e-110 315
Msa0958930 MtrunA17_Chr4g0011081 47.982 223 105 6 1 220 1 215 7.29e-61 190
Msa0958930 MtrunA17_Chr7g0275631 30.804 224 137 5 4 213 3 222 2.29e-27 104
Msa0958930 MtrunA17_Chr4g0056901 28.444 225 140 6 4 212 5 224 5.95e-22 90.1
Msa0958930 MtrunA17_Chr4g0011241 30.172 232 134 9 4 212 5 231 1.14e-20 86.7
Msa0958930 MtrunA17_Chr5g0398711 28.821 229 138 9 4 212 55 278 3.15e-20 86.3
Msa0958930 MtrunA17_Chr5g0398721 29.004 231 135 10 4 212 8 231 3.80e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958930 AT5G62280.1 52.137 234 98 6 1 221 1 233 6.81e-68 208
Msa0958930 AT2G45360.1 31.982 222 126 8 4 212 5 214 1.75e-24 96.7
Msa0958930 AT3G60780.1 30.045 223 132 9 4 212 5 217 1.35e-21 89.4
Msa0958930 AT1G12320.1 29.493 217 137 6 4 213 5 212 5.63e-14 68.6
Msa0958930 AT1G62840.1 29.956 227 133 8 4 212 5 223 1.08e-11 62.4

Find 52 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTACATTCGTGGTTATTT+TGG 0.133664 6_3:+75077584 Msa0958930:three_prime_UTR
CTCCTTCCAGATTCAAATTT+AGG 0.192509 6_3:-75077460 None:intergenic
TGAACACGATATATCAAATT+AGG 0.223706 6_3:-75077671 None:intergenic
ATTAGGATCTGGACCGTTAT+TGG 0.252117 6_3:+75077625 Msa0958930:three_prime_UTR
TGGAAACAATGCACAATTAA+TGG 0.255453 6_3:+75077024 Msa0958930:CDS
AAATGTTATTGTGTTGAATT+TGG 0.274532 6_3:-75076552 None:intergenic
CCATCAAAACAATGGCTTAC+TGG 0.279683 6_3:+75076610 Msa0958930:exon
ATTGGTTGTTGTAAACAAAA+AGG 0.293042 6_3:+75077307 Msa0958930:CDS
AAAAGGAGCACGAGAATTAT+TGG 0.296180 6_3:+75077210 Msa0958930:CDS
AAAACTCAATTGCTTCCTAT+TGG 0.296456 6_3:+75077391 Msa0958930:CDS
TTGACAGTTCATATCGATAA+TGG 0.320962 6_3:+75077730 Msa0958930:three_prime_UTR
GGGTTGTTGGTGACAAGATT+TGG 0.325248 6_3:+75077418 Msa0958930:CDS
CTATCTCAGCACTATGAAAA+TGG 0.327097 6_3:+75076656 Msa0958930:CDS
TTCAACAACACTTGCATTAG+TGG 0.332021 6_3:+75077072 Msa0958930:CDS
AAATGTGTGGTGGAACATAA+AGG 0.341264 6_3:+75077694 Msa0958930:three_prime_UTR
TACAATGCATTTAGTTCTAA+AGG 0.346376 6_3:+75077346 Msa0958930:CDS
ATTAGTCCTAAATTTGAATC+TGG 0.359441 6_3:+75077454 Msa0958930:CDS
AATCAAGTTCAATTCATGAT+TGG 0.360902 6_3:+75077187 Msa0958930:CDS
TATTGTGTTGAATTTGGTTT+GGG 0.377521 6_3:-75076546 None:intergenic
CAATCTCTTCATGATTCATA+AGG 0.388987 6_3:-75077270 None:intergenic
ACAATGCATTTAGTTCTAAA+GGG 0.423043 6_3:+75077347 Msa0958930:CDS
AATGTGTGGTGGAACATAAA+GGG 0.424842 6_3:+75077695 Msa0958930:three_prime_UTR
GTTCAATTCATGATTGGAAA+AGG 0.436833 6_3:+75077193 Msa0958930:CDS
GTAATAATCCTCGAAGTCAT+TGG 0.443901 6_3:+75077482 Msa0958930:CDS
ACCAACAACCCTTGTCCAAT+AGG 0.444260 6_3:-75077406 None:intergenic
ATTGTTAAATGTGTTCAAAT+TGG 0.445248 6_3:+75077289 Msa0958930:CDS
TCCTATTGGACAAGGGTTGT+TGG 0.448779 6_3:+75077405 Msa0958930:CDS
TGTTCTATTATAAGGAAACT+AGG 0.463573 6_3:+75077829 Msa0958930:three_prime_UTR
TTATTGTGTTGAATTTGGTT+TGG 0.469715 6_3:-75076547 None:intergenic
TTCACAATCCAATGACTTCG+AGG 0.474035 6_3:-75077490 None:intergenic
TTTATATCCGCAATAGCAGC+TGG 0.495543 6_3:+75077004 Msa0958930:CDS
GGGAAAAGGTCAACTAGATT+AGG 0.496982 6_3:+75077608 Msa0958930:three_prime_UTR
AGGTCAACTAGATTAGGATC+TGG 0.505853 6_3:+75077614 Msa0958930:three_prime_UTR
CGATGTGATTAGATCTTCGT+TGG 0.507976 6_3:-75077140 None:intergenic
CAATTGCTTCCTATTGGACA+AGG 0.513808 6_3:+75077397 Msa0958930:CDS
CTTGATTAGAAGCTACTCCT+AGG 0.528611 6_3:-75077171 None:intergenic
GCTGCTGCTAATCAAACAAA+TGG 0.531059 6_3:+75077094 Msa0958930:CDS
GTGAAGGTTGATAAATGTAC+TGG 0.532119 6_3:+75077508 Msa0958930:CDS
CATTTAGTTCTAAAGGGTCA+TGG 0.534221 6_3:+75077353 Msa0958930:CDS
GTGATTAGATCTTCGTTGGT+AGG 0.537491 6_3:-75077136 None:intergenic
GTCCTAAATTTGAATCTGGA+AGG 0.539804 6_3:+75077458 Msa0958930:CDS
AAAGGGTCATGGAGATCTTG+TGG 0.543729 6_3:+75077364 Msa0958930:CDS
GATATAAATTCAGCTACAGC+AGG 0.567313 6_3:-75076989 None:intergenic
TTAATGGTTGTAGCTTGTGC+TGG 0.571101 6_3:+75077040 Msa0958930:CDS
TCGAAGTCATTGGATTGTGA+AGG 0.589316 6_3:+75077492 Msa0958930:CDS
TTCCAATACCATCAAAACAA+TGG 0.597719 6_3:+75076602 Msa0958930:exon
TATAGAGTTAGACTTCCTCA+AGG 0.620428 6_3:+75077544 Msa0958930:CDS
ATGTGTGGTGGAACATAAAG+GGG 0.630073 6_3:+75077696 Msa0958930:three_prime_UTR
ATTGTTTCCAGCTGCTATTG+CGG 0.632041 6_3:-75077011 None:intergenic
AATTGCTTCCTATTGGACAA+GGG 0.636815 6_3:+75077398 Msa0958930:CDS
ATCGTGTTCAAAATGTGTGG+TGG 0.640686 6_3:+75077684 Msa0958930:three_prime_UTR
TATATCGTGTTCAAAATGTG+TGG 0.736670 6_3:+75077681 Msa0958930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTGTTCTATTATA+AGG + chr6_3:75077821-75077840 Msa0958930:three_prime_UTR 10.0%
!!! ATAAATTTTGTTCTATTATA+AGG + chr6_3:75077821-75077840 Msa0958930:three_prime_UTR 10.0%
!!! AAACATTTTGGTTATTAAAT+CGG - chr6_3:75076752-75076771 None:intergenic 15.0%
!! TTGAGATGAAAATTTATAAA+TGG - chr6_3:75076905-75076924 None:intergenic 15.0%
!!! ATCTTTTGTTATTTTTCAAT+AGG + chr6_3:75076949-75076968 Msa0958930:intron 15.0%
!!! TCTTTTGTTATTTTTCAATA+GGG + chr6_3:75076950-75076969 Msa0958930:intron 15.0%
!!! TGATTATACACTTAATTTTT+TGG + chr6_3:75077783-75077802 Msa0958930:three_prime_UTR 15.0%
!!! GATTATACACTTAATTTTTT+GGG + chr6_3:75077784-75077803 Msa0958930:three_prime_UTR 15.0%
!!! AAACATTTTGGTTATTAAAT+CGG - chr6_3:75076752-75076771 None:intergenic 15.0%
!! TTGAGATGAAAATTTATAAA+TGG - chr6_3:75076905-75076924 None:intergenic 15.0%
!!! ATCTTTTGTTATTTTTCAAT+AGG + chr6_3:75076949-75076968 Msa0958930:intron 15.0%
!!! TCTTTTGTTATTTTTCAATA+GGG + chr6_3:75076950-75076969 Msa0958930:intron 15.0%
!!! TGATTATACACTTAATTTTT+TGG + chr6_3:75077783-75077802 Msa0958930:three_prime_UTR 15.0%
!!! GATTATACACTTAATTTTTT+GGG + chr6_3:75077784-75077803 Msa0958930:three_prime_UTR 15.0%
!! AAATGTTATTGTGTTGAATT+TGG - chr6_3:75076555-75076574 None:intergenic 20.0%
!!! TATCGAATTTTAAATAGTCA+AGG - chr6_3:75076721-75076740 None:intergenic 20.0%
!! ATTGTTAAATGTGTTCAAAT+TGG + chr6_3:75077289-75077308 Msa0958930:CDS 20.0%
!!! TTTAAGTTTTATTACATTCG+TGG + chr6_3:75077575-75077594 Msa0958930:exon 20.0%
!! AAATGTTATTGTGTTGAATT+TGG - chr6_3:75076555-75076574 None:intergenic 20.0%
!!! TATCGAATTTTAAATAGTCA+AGG - chr6_3:75076721-75076740 None:intergenic 20.0%
!! ATTGTTAAATGTGTTCAAAT+TGG + chr6_3:75077289-75077308 Msa0958930:CDS 20.0%
!!! TTTAAGTTTTATTACATTCG+TGG + chr6_3:75077575-75077594 Msa0958930:exon 20.0%
! TAACATTAACAACTAATGGT+TGG - chr6_3:75076826-75076845 None:intergenic 25.0%
! TCGTTAACATTAACAACTAA+TGG - chr6_3:75076830-75076849 None:intergenic 25.0%
!!! TATTTTTCAATAGGGTCAAA+AGG + chr6_3:75076958-75076977 Msa0958930:intron 25.0%
! AATCAAGTTCAATTCATGAT+TGG + chr6_3:75077187-75077206 Msa0958930:CDS 25.0%
! ATTGGTTGTTGTAAACAAAA+AGG + chr6_3:75077307-75077326 Msa0958930:CDS 25.0%
!!! TACAATGCATTTAGTTCTAA+AGG + chr6_3:75077346-75077365 Msa0958930:CDS 25.0%
!!! ACAATGCATTTAGTTCTAAA+GGG + chr6_3:75077347-75077366 Msa0958930:CDS 25.0%
! ATTAGTCCTAAATTTGAATC+TGG + chr6_3:75077454-75077473 Msa0958930:CDS 25.0%
!! TATTACATTCGTGGTTATTT+TGG + chr6_3:75077584-75077603 Msa0958930:three_prime_UTR 25.0%
!!! ATTACATTCGTGGTTATTTT+GGG + chr6_3:75077585-75077604 Msa0958930:three_prime_UTR 25.0%
! TGAACACGATATATCAAATT+AGG - chr6_3:75077674-75077693 None:intergenic 25.0%
!!! ACACTTAATTTTTTGGGAAT+AGG + chr6_3:75077790-75077809 Msa0958930:three_prime_UTR 25.0%
! TGTTCTATTATAAGGAAACT+AGG + chr6_3:75077829-75077848 Msa0958930:three_prime_UTR 25.0%
! TAACATTAACAACTAATGGT+TGG - chr6_3:75076826-75076845 None:intergenic 25.0%
! TCGTTAACATTAACAACTAA+TGG - chr6_3:75076830-75076849 None:intergenic 25.0%
!!! TATTTTTCAATAGGGTCAAA+AGG + chr6_3:75076958-75076977 Msa0958930:intron 25.0%
! AATCAAGTTCAATTCATGAT+TGG + chr6_3:75077187-75077206 Msa0958930:CDS 25.0%
! ATTGGTTGTTGTAAACAAAA+AGG + chr6_3:75077307-75077326 Msa0958930:CDS 25.0%
!!! TACAATGCATTTAGTTCTAA+AGG + chr6_3:75077346-75077365 Msa0958930:CDS 25.0%
!!! ACAATGCATTTAGTTCTAAA+GGG + chr6_3:75077347-75077366 Msa0958930:CDS 25.0%
! ATTAGTCCTAAATTTGAATC+TGG + chr6_3:75077454-75077473 Msa0958930:CDS 25.0%
!! TATTACATTCGTGGTTATTT+TGG + chr6_3:75077584-75077603 Msa0958930:three_prime_UTR 25.0%
!!! ATTACATTCGTGGTTATTTT+GGG + chr6_3:75077585-75077604 Msa0958930:three_prime_UTR 25.0%
! TGAACACGATATATCAAATT+AGG - chr6_3:75077674-75077693 None:intergenic 25.0%
!!! ACACTTAATTTTTTGGGAAT+AGG + chr6_3:75077790-75077809 Msa0958930:three_prime_UTR 25.0%
! TGTTCTATTATAAGGAAACT+AGG + chr6_3:75077829-75077848 Msa0958930:three_prime_UTR 25.0%
TTCCAATACCATCAAAACAA+TGG + chr6_3:75076602-75076621 Msa0958930:exon 30.0%
! ATCGATTTAGCAATTTAGAG+AGG + chr6_3:75076784-75076803 Msa0958930:intron 30.0%
TCGATTTAGCAATTTAGAGA+GGG + chr6_3:75076785-75076804 Msa0958930:intron 30.0%
TGGAAACAATGCACAATTAA+TGG + chr6_3:75077024-75077043 Msa0958930:CDS 30.0%
ATCACATCGAAAAAAATCCT+AGG + chr6_3:75077154-75077173 Msa0958930:CDS 30.0%
GTTCAATTCATGATTGGAAA+AGG + chr6_3:75077193-75077212 Msa0958930:CDS 30.0%
CAATCTCTTCATGATTCATA+AGG - chr6_3:75077273-75077292 None:intergenic 30.0%
AAAACTCAATTGCTTCCTAT+TGG + chr6_3:75077391-75077410 Msa0958930:CDS 30.0%
!! ACTTAAATCACTTTTCCTTG+AGG - chr6_3:75077562-75077581 None:intergenic 30.0%
!! TTACATTCGTGGTTATTTTG+GGG + chr6_3:75077586-75077605 Msa0958930:three_prime_UTR 30.0%
!! GTTCGATTTTGATCCAATAA+CGG - chr6_3:75077641-75077660 None:intergenic 30.0%
TATATCGTGTTCAAAATGTG+TGG + chr6_3:75077681-75077700 Msa0958930:three_prime_UTR 30.0%
TTGACAGTTCATATCGATAA+TGG + chr6_3:75077730-75077749 Msa0958930:three_prime_UTR 30.0%
TTCCAATACCATCAAAACAA+TGG + chr6_3:75076602-75076621 Msa0958930:exon 30.0%
! ATCGATTTAGCAATTTAGAG+AGG + chr6_3:75076784-75076803 Msa0958930:intron 30.0%
TCGATTTAGCAATTTAGAGA+GGG + chr6_3:75076785-75076804 Msa0958930:intron 30.0%
TGGAAACAATGCACAATTAA+TGG + chr6_3:75077024-75077043 Msa0958930:CDS 30.0%
ATCACATCGAAAAAAATCCT+AGG + chr6_3:75077154-75077173 Msa0958930:CDS 30.0%
GTTCAATTCATGATTGGAAA+AGG + chr6_3:75077193-75077212 Msa0958930:CDS 30.0%
CAATCTCTTCATGATTCATA+AGG - chr6_3:75077273-75077292 None:intergenic 30.0%
AAAACTCAATTGCTTCCTAT+TGG + chr6_3:75077391-75077410 Msa0958930:CDS 30.0%
!! ACTTAAATCACTTTTCCTTG+AGG - chr6_3:75077562-75077581 None:intergenic 30.0%
!! TTACATTCGTGGTTATTTTG+GGG + chr6_3:75077586-75077605 Msa0958930:three_prime_UTR 30.0%
!! GTTCGATTTTGATCCAATAA+CGG - chr6_3:75077641-75077660 None:intergenic 30.0%
TATATCGTGTTCAAAATGTG+TGG + chr6_3:75077681-75077700 Msa0958930:three_prime_UTR 30.0%
TTGACAGTTCATATCGATAA+TGG + chr6_3:75077730-75077749 Msa0958930:three_prime_UTR 30.0%
!! TTTTGATGGTATTGGAAGAG+AGG - chr6_3:75076599-75076618 None:intergenic 35.0%
!!! AGCCATTGTTTTGATGGTAT+TGG - chr6_3:75076607-75076626 None:intergenic 35.0%
!! CATTTTCATAGTGCTGAGAT+AGG - chr6_3:75076658-75076677 None:intergenic 35.0%
CTATCTCAGCACTATGAAAA+TGG + chr6_3:75076656-75076675 Msa0958930:CDS 35.0%
! CACTAGACACTGAAACATTT+TGG - chr6_3:75076764-75076783 None:intergenic 35.0%
CTCTAACTCAATCGCTAAAT+CGG + chr6_3:75076868-75076887 Msa0958930:intron 35.0%
GATATAAATTCAGCTACAGC+AGG - chr6_3:75076992-75077011 None:intergenic 35.0%
TTCAACAACACTTGCATTAG+TGG + chr6_3:75077072-75077091 Msa0958930:CDS 35.0%
! AAAAGGAGCACGAGAATTAT+TGG + chr6_3:75077210-75077229 Msa0958930:CDS 35.0%
! CAAAAAGGTACAGTTGTTGT+TGG + chr6_3:75077322-75077341 Msa0958930:CDS 35.0%
!! CATTTAGTTCTAAAGGGTCA+TGG + chr6_3:75077353-75077372 Msa0958930:CDS 35.0%
AATTGCTTCCTATTGGACAA+GGG + chr6_3:75077398-75077417 Msa0958930:CDS 35.0%
GTCCTAAATTTGAATCTGGA+AGG + chr6_3:75077458-75077477 Msa0958930:CDS 35.0%
CTCCTTCCAGATTCAAATTT+AGG - chr6_3:75077463-75077482 None:intergenic 35.0%
GTAATAATCCTCGAAGTCAT+TGG + chr6_3:75077482-75077501 Msa0958930:CDS 35.0%
!! GTGAAGGTTGATAAATGTAC+TGG + chr6_3:75077508-75077527 Msa0958930:CDS 35.0%
TATAGAGTTAGACTTCCTCA+AGG + chr6_3:75077544-75077563 Msa0958930:CDS 35.0%
!!! TACATTCGTGGTTATTTTGG+GGG + chr6_3:75077587-75077606 Msa0958930:three_prime_UTR 35.0%
! AAATGTGTGGTGGAACATAA+AGG + chr6_3:75077694-75077713 Msa0958930:three_prime_UTR 35.0%
! AATGTGTGGTGGAACATAAA+GGG + chr6_3:75077695-75077714 Msa0958930:three_prime_UTR 35.0%
!! TTTTGATGGTATTGGAAGAG+AGG - chr6_3:75076599-75076618 None:intergenic 35.0%
!!! AGCCATTGTTTTGATGGTAT+TGG - chr6_3:75076607-75076626 None:intergenic 35.0%
!! CATTTTCATAGTGCTGAGAT+AGG - chr6_3:75076658-75076677 None:intergenic 35.0%
CTATCTCAGCACTATGAAAA+TGG + chr6_3:75076656-75076675 Msa0958930:CDS 35.0%
! CACTAGACACTGAAACATTT+TGG - chr6_3:75076764-75076783 None:intergenic 35.0%
CTCTAACTCAATCGCTAAAT+CGG + chr6_3:75076868-75076887 Msa0958930:intron 35.0%
GATATAAATTCAGCTACAGC+AGG - chr6_3:75076992-75077011 None:intergenic 35.0%
TTCAACAACACTTGCATTAG+TGG + chr6_3:75077072-75077091 Msa0958930:CDS 35.0%
! AAAAGGAGCACGAGAATTAT+TGG + chr6_3:75077210-75077229 Msa0958930:CDS 35.0%
! CAAAAAGGTACAGTTGTTGT+TGG + chr6_3:75077322-75077341 Msa0958930:CDS 35.0%
!! CATTTAGTTCTAAAGGGTCA+TGG + chr6_3:75077353-75077372 Msa0958930:CDS 35.0%
AATTGCTTCCTATTGGACAA+GGG + chr6_3:75077398-75077417 Msa0958930:CDS 35.0%
GTCCTAAATTTGAATCTGGA+AGG + chr6_3:75077458-75077477 Msa0958930:CDS 35.0%
CTCCTTCCAGATTCAAATTT+AGG - chr6_3:75077463-75077482 None:intergenic 35.0%
GTAATAATCCTCGAAGTCAT+TGG + chr6_3:75077482-75077501 Msa0958930:CDS 35.0%
!! GTGAAGGTTGATAAATGTAC+TGG + chr6_3:75077508-75077527 Msa0958930:CDS 35.0%
TATAGAGTTAGACTTCCTCA+AGG + chr6_3:75077544-75077563 Msa0958930:CDS 35.0%
!!! TACATTCGTGGTTATTTTGG+GGG + chr6_3:75077587-75077606 Msa0958930:three_prime_UTR 35.0%
! AAATGTGTGGTGGAACATAA+AGG + chr6_3:75077694-75077713 Msa0958930:three_prime_UTR 35.0%
! AATGTGTGGTGGAACATAAA+GGG + chr6_3:75077695-75077714 Msa0958930:three_prime_UTR 35.0%
!!! CCAGTAAGCCATTGTTTTGA+TGG - chr6_3:75076613-75076632 None:intergenic 40.0%
CCATCAAAACAATGGCTTAC+TGG + chr6_3:75076610-75076629 Msa0958930:exon 40.0%
TTTATATCCGCAATAGCAGC+TGG + chr6_3:75077004-75077023 Msa0958930:CDS 40.0%
ATTGTTTCCAGCTGCTATTG+CGG - chr6_3:75077014-75077033 None:intergenic 40.0%
! TTAATGGTTGTAGCTTGTGC+TGG + chr6_3:75077040-75077059 Msa0958930:CDS 40.0%
GCTGCTGCTAATCAAACAAA+TGG + chr6_3:75077094-75077113 Msa0958930:CDS 40.0%
GTGATTAGATCTTCGTTGGT+AGG - chr6_3:75077139-75077158 None:intergenic 40.0%
CGATGTGATTAGATCTTCGT+TGG - chr6_3:75077143-75077162 None:intergenic 40.0%
CTTGATTAGAAGCTACTCCT+AGG - chr6_3:75077174-75077193 None:intergenic 40.0%
CAATTGCTTCCTATTGGACA+AGG + chr6_3:75077397-75077416 Msa0958930:CDS 40.0%
TTCACAATCCAATGACTTCG+AGG - chr6_3:75077493-75077512 None:intergenic 40.0%
TCGAAGTCATTGGATTGTGA+AGG + chr6_3:75077492-75077511 Msa0958930:CDS 40.0%
!!! ACATTCGTGGTTATTTTGGG+GGG + chr6_3:75077588-75077607 Msa0958930:three_prime_UTR 40.0%
GGGAAAAGGTCAACTAGATT+AGG + chr6_3:75077608-75077627 Msa0958930:three_prime_UTR 40.0%
AGGTCAACTAGATTAGGATC+TGG + chr6_3:75077614-75077633 Msa0958930:three_prime_UTR 40.0%
ATTAGGATCTGGACCGTTAT+TGG + chr6_3:75077625-75077644 Msa0958930:three_prime_UTR 40.0%
ATCGTGTTCAAAATGTGTGG+TGG + chr6_3:75077684-75077703 Msa0958930:three_prime_UTR 40.0%
! ATGTGTGGTGGAACATAAAG+GGG + chr6_3:75077696-75077715 Msa0958930:three_prime_UTR 40.0%
!!! CCAGTAAGCCATTGTTTTGA+TGG - chr6_3:75076613-75076632 None:intergenic 40.0%
CCATCAAAACAATGGCTTAC+TGG + chr6_3:75076610-75076629 Msa0958930:exon 40.0%
TTTATATCCGCAATAGCAGC+TGG + chr6_3:75077004-75077023 Msa0958930:CDS 40.0%
ATTGTTTCCAGCTGCTATTG+CGG - chr6_3:75077014-75077033 None:intergenic 40.0%
! TTAATGGTTGTAGCTTGTGC+TGG + chr6_3:75077040-75077059 Msa0958930:CDS 40.0%
GCTGCTGCTAATCAAACAAA+TGG + chr6_3:75077094-75077113 Msa0958930:CDS 40.0%
GTGATTAGATCTTCGTTGGT+AGG - chr6_3:75077139-75077158 None:intergenic 40.0%
CGATGTGATTAGATCTTCGT+TGG - chr6_3:75077143-75077162 None:intergenic 40.0%
CTTGATTAGAAGCTACTCCT+AGG - chr6_3:75077174-75077193 None:intergenic 40.0%
CAATTGCTTCCTATTGGACA+AGG + chr6_3:75077397-75077416 Msa0958930:CDS 40.0%
TTCACAATCCAATGACTTCG+AGG - chr6_3:75077493-75077512 None:intergenic 40.0%
TCGAAGTCATTGGATTGTGA+AGG + chr6_3:75077492-75077511 Msa0958930:CDS 40.0%
!!! ACATTCGTGGTTATTTTGGG+GGG + chr6_3:75077588-75077607 Msa0958930:three_prime_UTR 40.0%
GGGAAAAGGTCAACTAGATT+AGG + chr6_3:75077608-75077627 Msa0958930:three_prime_UTR 40.0%
AGGTCAACTAGATTAGGATC+TGG + chr6_3:75077614-75077633 Msa0958930:three_prime_UTR 40.0%
ATTAGGATCTGGACCGTTAT+TGG + chr6_3:75077625-75077644 Msa0958930:three_prime_UTR 40.0%
ATCGTGTTCAAAATGTGTGG+TGG + chr6_3:75077684-75077703 Msa0958930:three_prime_UTR 40.0%
! ATGTGTGGTGGAACATAAAG+GGG + chr6_3:75077696-75077715 Msa0958930:three_prime_UTR 40.0%
!! AGTGCTGAGATAGGCTTTTG+TGG - chr6_3:75076649-75076668 None:intergenic 45.0%
AAAGGGTCATGGAGATCTTG+TGG + chr6_3:75077364-75077383 Msa0958930:CDS 45.0%
TCCTATTGGACAAGGGTTGT+TGG + chr6_3:75077405-75077424 Msa0958930:CDS 45.0%
ACCAACAACCCTTGTCCAAT+AGG - chr6_3:75077409-75077428 None:intergenic 45.0%
!! GGGTTGTTGGTGACAAGATT+TGG + chr6_3:75077418-75077437 Msa0958930:CDS 45.0%
!!! GTGGTTATTTTGGGGGGAAA+AGG + chr6_3:75077594-75077613 Msa0958930:three_prime_UTR 45.0%
!! AGTGCTGAGATAGGCTTTTG+TGG - chr6_3:75076649-75076668 None:intergenic 45.0%
AAAGGGTCATGGAGATCTTG+TGG + chr6_3:75077364-75077383 Msa0958930:CDS 45.0%
TCCTATTGGACAAGGGTTGT+TGG + chr6_3:75077405-75077424 Msa0958930:CDS 45.0%
ACCAACAACCCTTGTCCAAT+AGG - chr6_3:75077409-75077428 None:intergenic 45.0%
!! GGGTTGTTGGTGACAAGATT+TGG + chr6_3:75077418-75077437 Msa0958930:CDS 45.0%
!!! GTGGTTATTTTGGGGGGAAA+AGG + chr6_3:75077594-75077613 Msa0958930:three_prime_UTR 45.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 75076549 75077857 75076549 ID=Msa0958930;Name=Msa0958930
chr6_3 mRNA 75076549 75077857 75076549 ID=Msa0958930-mRNA-1;Parent=Msa0958930;Name=Msa0958930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=72|1|1|1|1|1|2|278|221
chr6_3 exon 75076549 75076677 75076549 ID=Msa0958930-mRNA-1:exon:13405;Parent=Msa0958930-mRNA-1
chr6_3 exon 75076971 75077857 75076971 ID=Msa0958930-mRNA-1:exon:13406;Parent=Msa0958930-mRNA-1
chr6_3 five_prime_UTR 75076549 75076620 75076549 ID=Msa0958930-mRNA-1:five_prime_utr;Parent=Msa0958930-mRNA-1
chr6_3 CDS 75076621 75076677 75076621 ID=Msa0958930-mRNA-1:cds;Parent=Msa0958930-mRNA-1
chr6_3 CDS 75076971 75077579 75076971 ID=Msa0958930-mRNA-1:cds;Parent=Msa0958930-mRNA-1
chr6_3 three_prime_UTR 75077580 75077857 75077580 ID=Msa0958930-mRNA-1:three_prime_utr;Parent=Msa0958930-mRNA-1
Gene Sequence

>Msa0958930

ATGGCTTACTGGTCAGCAGAAAATGCCACAAAAGCCTATCTCAGCACTATGAAAATGGGTCAAAAGGCAAAAGAACCTGCTGTAGCTGAATTTATATCCGCAATAGCAGCTGGAAACAATGCACAATTAATGGTTGTAGCTTGTGCTGGTACAGCAGATTCAACAACACTTGCATTAGTGGCTGCTGCTAATCAAACAAATGGCAAAGTAATATGCATTGTTCCTACCAACGAAGATCTAATCACATCGAAAAAAATCCTAGGAGTAGCTTCTAATCAAGTTCAATTCATGATTGGAAAAGGAGCACGAGAATTATTGGTGTTAAACAAAGCTGATTTTGTGTTAATTGATTGCAACCTTATGAATCATGAAGAGATTGTTAAATGTGTTCAAATTGGTTGTTGTAAACAAAAAGGTACAGTTGTTGTTGGTTACAATGCATTTAGTTCTAAAGGGTCATGGAGATCTTGTGGAACAAAAACTCAATTGCTTCCTATTGGACAAGGGTTGTTGGTGACAAGATTTGGAGAGAGTAATGCTATTAGTCCTAAATTTGAATCTGGAAGGAGTAATAATCCTCGAAGTCATTGGATTGTGAAGGTTGATAAATGTACTGGTGAAGAACATGTTTATAGAGTTAGACTTCCTCAAGGAAAAGTGATTTAA
Protein sequence

>Msa0958930

MAYWSAENATKAYLSTMKMGQKAKEPAVAEFISAIAAGNNAQLMVVACAGTADSTTLALVAAANQTNGKVICIVPTNEDLITSKKILGVASNQVQFMIGKGARELLVLNKADFVLIDCNLMNHEEIVKCVQIGCCKQKGTVVVGYNAFSSKGSWRSCGTKTQLLPIGQGLLVTRFGESNAISPKFESGRSNNPRSHWIVKVDKCTGEEHVYRVRLPQGKVI*