AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960400 MtrunA17_Chr6g0478101 92.675 628 46 0 1 628 1 628 0.0 1188
Msa0960400 MtrunA17_Chr8g0361761 73.167 641 154 7 2 628 61 697 0.0 902
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960400 AT1G15660.1 35.688 269 141 8 34 290 88 336 4.11e-26 114
Msa0960400 AT1G15660.1 48.361 122 52 2 516 626 582 703 1.31e-24 109

Find 171 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACAAAACCTTTGGAATAT+TGG 0.171874 6_3:-79803300 Msa0960400:CDS
CACAAATGATTTAGCCTTCA+TGG 0.207737 6_3:+79803087 None:intergenic
GTTGCAGTGGTATGGGAAAA+AGG 0.222428 6_3:-79804976 Msa0960400:CDS
TCAATTTCATGAGCTGAAAA+TGG 0.225236 6_3:+79805346 None:intergenic
CTTCTGAGGAAGAGCCTTGC+AGG 0.259480 6_3:-79803465 Msa0960400:intron
TAATTAAAGTGTGAACATTT+TGG 0.273495 6_3:+79802758 None:intergenic
CAAAGTTTCTCTTGCATCAT+TGG 0.275589 6_3:-79805905 Msa0960400:CDS
GGTTCTGCGGCACCTGTTAA+TGG 0.282637 6_3:-79803537 Msa0960400:CDS
CGGGAATTCCTGGGTTTAAT+CGG 0.318075 6_3:-79806157 Msa0960400:CDS
GATCAATTGGTTGGGTATCT+AGG 0.318974 6_3:+79805584 None:intergenic
CGCAAAGATTTCAGATCAAT+TGG 0.320321 6_3:+79805571 None:intergenic
GAACGTCGACCGGGAATTCC+TGG 0.325061 6_3:-79806167 Msa0960400:CDS
GTCCACAATATCTTCAGTTA+TGG 0.334042 6_3:+79805120 None:intergenic
CCTTACTTTCCAACCGTTCA+TGG 0.340533 6_3:+79806444 None:intergenic
GAGAGAGCATACGATGAATC+TGG 0.345786 6_3:+79807511 None:intergenic
ATTCCAAGGAACACAATTCT+AGG 0.347739 6_3:-79805168 Msa0960400:CDS
GTTGGTTTCCCATCACTTCC+AGG 0.355044 6_3:+79803109 None:intergenic
GGAACCTGTAAACACTGTTC+TGG 0.357887 6_3:+79804399 None:intergenic
TCAAAATGATAAGGTTCATT+TGG 0.358277 6_3:+79804917 None:intergenic
GCAATAACATCTTCAATTAT+AGG 0.365758 6_3:+79805229 None:intergenic
ATTATCTCCAAGTTTGTAGA+AGG 0.368607 6_3:-79802814 Msa0960400:three_prime_UTR
TGGCCCAGAACAGTGTTTAC+AGG 0.376634 6_3:-79804403 Msa0960400:intron
CGATTAAACCCAGGAATTCC+CGG 0.377179 6_3:+79806158 None:intergenic
AACCAACAATATCGACTTCC+TGG 0.377795 6_3:+79805281 None:intergenic
TAAGGAGAAGCACCAGGTTC+AGG 0.379731 6_3:-79803321 Msa0960400:CDS
TAGGGTTTCAACAGAAGCTT+TGG 0.382612 6_3:-79806010 Msa0960400:CDS
ATTGGTGAATAGTTTCTTGT+AGG 0.385254 6_3:+79805316 None:intergenic
CAGGTTTGAGTACTGTCATT+GGG 0.396194 6_3:-79803147 Msa0960400:CDS
TCCACAATATCTTCAGTTAT+GGG 0.399476 6_3:+79805121 None:intergenic
ATCTTATTCTCTTCAATAGC+TGG 0.399997 6_3:+79805736 None:intergenic
ACCCTATGTCTGTATCTAAC+TGG 0.407265 6_3:+79806027 None:intergenic
GTTCTGCGGCACCTGTTAAT+GGG 0.409107 6_3:-79803536 Msa0960400:CDS
TGCACGATTGAGGCCTAAAC+CGG 0.412893 6_3:+79806651 None:intergenic
ATTCAGAAGCTATCTCAAAA+AGG 0.413485 6_3:+79803047 None:intergenic
GTCGGATTCAAATGCCTCTT+GGG 0.414990 6_3:+79805963 None:intergenic
ATTCCTAGAATTGTGTTCCT+TGG 0.416122 6_3:+79805165 None:intergenic
GTTGACATGGATGTGGATAT+TGG 0.419373 6_3:-79804998 Msa0960400:CDS
TCCTGGTTTACCATGTGAAT+TGG 0.419909 6_3:+79805298 None:intergenic
AACCTTTGGAATATTGGAAA+GGG 0.426233 6_3:-79803294 Msa0960400:CDS
CAGGTTCAGGACAAAACCTT+TGG 0.430022 6_3:-79803308 Msa0960400:CDS
GTTAAATCATGTATGCGAAA+AGG 0.433115 6_3:-79803504 Msa0960400:CDS
TGGTGAGACAAATACAATTC+TGG 0.434271 6_3:-79805203 Msa0960400:CDS
GGTTGGGTATCTAGGAAGTC+TGG 0.436867 6_3:+79805592 None:intergenic
TGTCGGATTCAAATGCCTCT+TGG 0.438818 6_3:+79805962 None:intergenic
GGGATCGTTGTTGTTCTACT+TGG 0.443253 6_3:+79807532 None:intergenic
CCTCAGAAGTCTCTTACCCT+TGG 0.446287 6_3:+79803479 None:intergenic
GCAGGTTTGAGTACTGTCAT+TGG 0.447015 6_3:-79803148 Msa0960400:intron
TTAAATCATGTATGCGAAAA+GGG 0.447425 6_3:-79803503 Msa0960400:CDS
TAAACCACGGGAACGTCGAC+CGG 0.450598 6_3:-79806177 Msa0960400:CDS
TTGTCAGTGTTATCACCAAC+AGG 0.454038 6_3:+79805931 None:intergenic
CATTGCAAAAGCACATTTCA+CGG 0.454267 6_3:-79805387 Msa0960400:CDS
GCAGGCCATGACAATGTTAG+AGG 0.454724 6_3:-79806770 Msa0960400:exon
CGAAAACGGAGACCCGGTTT+AGG 0.456923 6_3:-79806664 Msa0960400:CDS
CTAAAGATAAAGTTATAGAA+AGG 0.458635 6_3:+79803017 None:intergenic
AAGATTTCAGATCAATTGGT+TGG 0.460402 6_3:+79805575 None:intergenic
TGCGTATCAAGCCAATTCTA+TGG 0.462533 6_3:-79804451 Msa0960400:CDS
GCTGGTACATCATGGGAGTC+TGG 0.463054 6_3:-79803346 Msa0960400:CDS
GGTGCATTAACTTTATCTGA+TGG 0.467941 6_3:+79805142 None:intergenic
GTTGATAATTCAACCGAACC+TGG 0.470025 6_3:-79805055 Msa0960400:CDS
GTCGAAGCCAAGCAAAAGAA+AGG 0.475275 6_3:-79805539 Msa0960400:CDS
GAACCTGTAAACACTGTTCT+GGG 0.477824 6_3:+79804400 None:intergenic
ACATAATCATTGCTGACTCC+TGG 0.479285 6_3:+79802930 None:intergenic
AGATTTCAGATCAATTGGTT+GGG 0.479459 6_3:+79805576 None:intergenic
AAGCCAATTCTATGGACAAA+AGG 0.480778 6_3:-79804443 Msa0960400:CDS
ATTAGCATTAAACCCAGGTT+CGG 0.482649 6_3:+79805042 None:intergenic
CATTACTCCTCAAAAGTCCT+TGG 0.486280 6_3:-79805077 Msa0960400:CDS
TCTCAACTCGGAGATTCCAC+TGG 0.489156 6_3:-79804739 Msa0960400:CDS
GACGTAGATAATTGGTTGAA+AGG 0.491709 6_3:-79805508 Msa0960400:CDS
GGATATTGGTTGCAGTGGTA+TGG 0.493152 6_3:-79804984 Msa0960400:CDS
TGTGTCATCTCAGCCAAGTC+AGG 0.498374 6_3:-79806207 Msa0960400:CDS
CATCCTACACTCCGTCTAAG+AGG 0.499095 6_3:+79805469 None:intergenic
TCCCACTGAACTTGTAGAGC+AGG 0.502250 6_3:-79806788 Msa0960400:five_prime_UTR
GCCTGCTCTACAAGTTCAGT+GGG 0.504207 6_3:+79806787 None:intergenic
TCCCAGATGCTGGTACATCA+TGG 0.509495 6_3:-79803354 Msa0960400:intron
CAAATGCCTCTTGGGAGGAT+AGG 0.513403 6_3:+79805971 None:intergenic
TTAACTGAATTATGATTATG+TGG 0.513594 6_3:-79802847 Msa0960400:three_prime_UTR
AACGTCGACCGGGAATTCCT+GGG 0.517660 6_3:-79806166 Msa0960400:CDS
AAACCACGGGAACGTCGACC+GGG 0.518390 6_3:-79806176 Msa0960400:CDS
GGGGTGAAGTGCATGTCTCC+TGG 0.519471 6_3:-79803127 Msa0960400:CDS
AACCAGGAAGTCGATATTGT+TGG 0.520625 6_3:-79805283 Msa0960400:CDS
ATTGAAGATGTTATTGCTGC+TGG 0.520826 6_3:-79805223 Msa0960400:CDS
GTAATGGTGCAATTTCTGTC+AGG 0.520887 6_3:+79805094 None:intergenic
GGTTTAGTTGAATCCTGACT+TGG 0.522269 6_3:+79806194 None:intergenic
CATCATGGGAGTCTGGAGTA+AGG 0.522515 6_3:-79803339 Msa0960400:CDS
ATGGAGAATTACCTCGAAAA+CGG 0.523113 6_3:-79806678 Msa0960400:CDS
GAATGAACCTGCTGTTGACA+TGG 0.526500 6_3:-79805011 Msa0960400:CDS
AAACCTTTGGAATATTGGAA+AGG 0.527619 6_3:-79803295 Msa0960400:CDS
CTTTGACAGACCCTCTGTTG+AGG 0.527667 6_3:-79806525 Msa0960400:intron
AGAAAATTCAACTCAAGATG+TGG 0.533534 6_3:-79806728 Msa0960400:CDS
TCATTGGATAATGAAGTAAC+CGG 0.534055 6_3:-79805889 Msa0960400:intron
AGATCCCGAGGAATTCTTCA+TGG 0.534414 6_3:-79806468 Msa0960400:CDS
ACGTTGTCATCAAAATGATA+AGG 0.534740 6_3:+79804908 None:intergenic
TCCCCTTTCCAATATTCCAA+AGG 0.537687 6_3:+79803292 None:intergenic
AAGAGAAATAGAAAAGCAGT+TGG 0.537770 6_3:-79806234 Msa0960400:CDS
CTTACTTTCCAACCGTTCAT+GGG 0.539151 6_3:+79806445 None:intergenic
ATCAATGAAATTAGCTAACA+TGG 0.539302 6_3:-79802897 Msa0960400:three_prime_UTR
AGAGAAATAGAAAAGCAGTT+GGG 0.540874 6_3:-79806233 Msa0960400:CDS
GACAATGTTAGAGGACGACT+TGG 0.544853 6_3:-79806761 Msa0960400:CDS
TGCATGTCTCCTGGAAGTGA+TGG 0.545184 6_3:-79803118 Msa0960400:CDS
GGAGACTTCTGAAAATTCCA+AGG 0.548105 6_3:-79805182 Msa0960400:CDS
GATATTGGTTGCAGTGGTAT+GGG 0.550979 6_3:-79804983 Msa0960400:CDS
CCCAGATGCTGGTACATCAT+GGG 0.556859 6_3:-79803353 Msa0960400:intron
AGAGAGCATACGATGAATCT+GGG 0.557074 6_3:+79807512 None:intergenic
CTTCATGGCCCATGAACGGT+TGG 0.557160 6_3:-79806453 Msa0960400:CDS
TGGGCCATGAAGAATTCCTC+GGG 0.558876 6_3:+79806464 None:intergenic
ACTGTCAAGCAACGAAGAAG+AGG 0.559529 6_3:+79807615 None:intergenic
TCCACATCCATGTCAACAGC+AGG 0.561201 6_3:+79805004 None:intergenic
AAGTTCAGTGGGACTTAACA+AGG 0.562289 6_3:+79806798 None:intergenic
GCCAGTTAGATACAGACATA+GGG 0.563881 6_3:-79806028 Msa0960400:CDS
TTGATCTGAAATCTTTGCGA+GGG 0.566149 6_3:-79805567 Msa0960400:CDS
ATGGGCCATGAAGAATTCCT+CGG 0.566378 6_3:+79806463 None:intergenic
AATGATTTAGCCTTCATGGT+TGG 0.571028 6_3:+79803091 None:intergenic
ATGTATGCGAAAAGGGTCCA+AGG 0.573241 6_3:-79803496 Msa0960400:CDS
ATATTGGAAAGGGGAAAGAA+TGG 0.575060 6_3:-79803284 Msa0960400:CDS
GAAAATTCAACTCAAGATGT+GGG 0.575216 6_3:-79806727 Msa0960400:CDS
CTGGAGTAAGGAGAAGCACC+AGG 0.575899 6_3:-79803327 Msa0960400:CDS
TTGAGATTCGCATCATCTGT+TGG 0.577279 6_3:+79804756 None:intergenic
GGCCAGTTAGATACAGACAT+AGG 0.578214 6_3:-79806029 Msa0960400:CDS
ACTACTAAGTACTTACATCC+AGG 0.581714 6_3:-79802948 Msa0960400:three_prime_UTR
AAAGGGGAAAGAATGGTGTA+TGG 0.583423 6_3:-79803277 Msa0960400:CDS
CTGGTACAGGAAAAGGCAGT+TGG 0.584644 6_3:-79803558 Msa0960400:intron
GACAGTCTCAACAGAGTGAA+GGG 0.585128 6_3:-79807598 Msa0960400:five_prime_UTR
ACCAATTCACATGGTAAACC+AGG 0.588809 6_3:-79805299 Msa0960400:CDS
TGTACTCACTCTCGTGTACA+CGG 0.589362 6_3:+79803254 None:intergenic
GTCGTCCTCTAACATTGTCA+TGG 0.590775 6_3:+79806765 None:intergenic
AATTCTTCATGGCCCATGAA+CGG 0.593095 6_3:-79806457 Msa0960400:CDS
TTGATAATTCAACCGAACCT+GGG 0.595127 6_3:-79805054 Msa0960400:CDS
ACCTTTGGAATATTGGAAAG+GGG 0.597204 6_3:-79803293 Msa0960400:CDS
CTCAACTCGGAGATTCCACT+GGG 0.598225 6_3:-79804738 Msa0960400:intron
GGTAATAAATCCTCAACAGA+GGG 0.598342 6_3:+79806515 None:intergenic
TGATGGGAAACCAACCATGA+AGG 0.601154 6_3:-79803101 Msa0960400:CDS
TCAGGATTCAACTAAACCAC+GGG 0.602045 6_3:-79806189 Msa0960400:CDS
GATACTGGAAGAAAACATGC+AGG 0.605343 6_3:-79804796 Msa0960400:CDS
ACCTGCTGTTGACATGGATG+TGG 0.606085 6_3:-79805005 Msa0960400:CDS
ACCCATAACTGAAGATATTG+TGG 0.609457 6_3:-79805122 Msa0960400:CDS
TGACAGTCTCAACAGAGTGA+AGG 0.610840 6_3:-79807599 Msa0960400:five_prime_UTR
AGGTCTAGAAGATCAGATGA+TGG 0.613393 6_3:-79804423 Msa0960400:CDS
GGCCTGCTCTACAAGTTCAG+TGG 0.614533 6_3:+79806786 None:intergenic
GCACGATTGAGGCCTAAACC+GGG 0.614789 6_3:+79806652 None:intergenic
AGGGTTATGGATGACACAGT+AGG 0.615729 6_3:-79804956 Msa0960400:CDS
GAATTCCTGGGTTTAATCGG+AGG 0.617275 6_3:-79806154 Msa0960400:intron
ATATTCAGACACCTCTTAGA+CGG 0.618171 6_3:-79805480 Msa0960400:CDS
GGAAAAGGCAGTTGGTTCTG+CGG 0.622196 6_3:-79803550 Msa0960400:CDS
ATAACATCTTCAATTATAGG+TGG 0.626098 6_3:+79805232 None:intergenic
TTACCTCGAAAACGGAGACC+CGG 0.626700 6_3:-79806670 Msa0960400:CDS
TTCGGTTGAATTATCAACCA+AGG 0.629695 6_3:+79805060 None:intergenic
GGTGGAGTCAGCTCATCTGA+CGG 0.629863 6_3:+79805250 None:intergenic
TCTGAAGAACTAGAGGGTGA+AGG 0.629989 6_3:-79805679 Msa0960400:CDS
ACACCTCTTAGACGGAGTGT+AGG 0.632521 6_3:-79805472 Msa0960400:CDS
GCATGTCTCCTGGAAGTGAT+GGG 0.633317 6_3:-79803117 Msa0960400:CDS
GGATTCAAATGCCTCTTGGG+AGG 0.639462 6_3:+79805966 None:intergenic
TTATGGATGACACAGTAGGA+AGG 0.645040 6_3:-79804952 Msa0960400:CDS
ACAATGTTAGAGGACGACTT+GGG 0.646358 6_3:-79806760 Msa0960400:CDS
ACCAACAGGATCAAGACTGT+CGG 0.646909 6_3:+79805945 None:intergenic
TCCGACAGTCTTGATCCTGT+TGG 0.647606 6_3:-79805946 Msa0960400:CDS
CGGTAATAAATCCTCAACAG+AGG 0.650768 6_3:+79806514 None:intergenic
GTCAGGATTCAACTAAACCA+CGG 0.650977 6_3:-79806190 Msa0960400:CDS
TTGTGATTCTGAAGAACTAG+AGG 0.652423 6_3:-79805686 Msa0960400:CDS
AGGTTTGAGTACTGTCATTG+GGG 0.652495 6_3:-79803146 Msa0960400:CDS
ATTGATCTGAAATCTTTGCG+AGG 0.653556 6_3:-79805568 Msa0960400:CDS
TTGGGAAGTACAAACCTGCA+AGG 0.655401 6_3:+79803451 None:intergenic
AGATGATGCGAATCTCAACT+CGG 0.658843 6_3:-79804751 Msa0960400:CDS
TGTATGCGAAAAGGGTCCAA+GGG 0.662363 6_3:-79803495 Msa0960400:CDS
CGTTACCTCCGATTAAACCC+AGG 0.664958 6_3:+79806149 None:intergenic
GTTGGTGATAACACTGACAA+AGG 0.675294 6_3:-79805928 Msa0960400:CDS
TGATGTCCTATCCTCCCAAG+AGG 0.681042 6_3:-79805977 Msa0960400:CDS
GATGTGGATATTGGTTGCAG+TGG 0.685965 6_3:-79804989 Msa0960400:CDS
AAACTATTCACCAATTCACA+TGG 0.693509 6_3:-79805308 Msa0960400:CDS
TCAGCATTAGCATTAAACCC+AGG 0.694712 6_3:+79805037 None:intergenic
TGTGATTCTGAAGAACTAGA+GGG 0.710684 6_3:-79805685 Msa0960400:CDS
CCAAGGGTAAGAGACTTCTG+AGG 0.717597 6_3:-79803479 Msa0960400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATTATTATTATTATT+AGG - chr6_3:79803038-79803057 Msa0960400:exon 0.0%
!! TTATATTATTATTATTATTA+GGG - chr6_3:79803039-79803058 Msa0960400:exon 0.0%
!!! AAATTTTAGTTGATTTTATT+AGG - chr6_3:79803068-79803087 Msa0960400:CDS 10.0%
!!! AATTTTAGTTGATTTTATTA+GGG - chr6_3:79803069-79803088 Msa0960400:CDS 10.0%
!! TAATAGTACATTAATTTAAA+TGG + chr6_3:79803130-79803149 None:intergenic 10.0%
!!! GATAAACTAAATTTTTTATT+GGG - chr6_3:79803556-79803575 Msa0960400:intron 10.0%
!!! TATAATAATTTTATATCCTA+GGG + chr6_3:79806419-79806438 None:intergenic 10.0%
!!! ATATAATAATTTTATATCCT+AGG + chr6_3:79806420-79806439 None:intergenic 10.0%
!! TAAAAATGGAAACTTAAATT+TGG - chr6_3:79802917-79802936 Msa0960400:three_prime_UTR 15.0%
!! ATAATGAAGTAAAAATGAAA+TGG + chr6_3:79803020-79803039 None:intergenic 15.0%
!!! TTCTTTTTTGATATACTAAA+AGG - chr6_3:79803240-79803259 Msa0960400:intron 15.0%
!!! CGATAAACTAAATTTTTTAT+TGG - chr6_3:79803555-79803574 Msa0960400:intron 15.0%
!! TATTAAATTAAAATACTCAG+AGG + chr6_3:79805616-79805635 None:intergenic 15.0%
!!! TTTTTGATAAATAAACTTAG+AGG + chr6_3:79805801-79805820 None:intergenic 15.0%
!!! ATACTTTATTATTGTTTTGA+TGG - chr6_3:79805869-79805888 Msa0960400:intron 15.0%
!!! ATAATAATTTTATATCCTAG+GGG + chr6_3:79806418-79806437 None:intergenic 15.0%
!! AGTAAAAATGAAATGGAAAA+AGG + chr6_3:79803013-79803032 None:intergenic 20.0%
!! ATTGAAAAGTAAAATGAACT+CGG + chr6_3:79803104-79803123 None:intergenic 20.0%
!!! ATTGAATAAGCTTTACTTTT+TGG + chr6_3:79803892-79803911 None:intergenic 20.0%
!! ATTTGTTCTTGATGTTATAT+TGG - chr6_3:79804437-79804456 Msa0960400:CDS 20.0%
!!! TAATCTTAAGTTGTTATCAA+AGG - chr6_3:79805634-79805653 Msa0960400:CDS 20.0%
!! ATGTTTATTATCATAGATAC+TGG - chr6_3:79805681-79805700 Msa0960400:CDS 20.0%
!! AGGAAAATGATAAAGTTTAT+AGG + chr6_3:79806271-79806290 None:intergenic 20.0%
!! TTATTAGATCATTTGTTTGA+AGG - chr6_3:79806516-79806535 Msa0960400:CDS 20.0%
!! AAAAAAATAATAGGATAGCA+TGG + chr6_3:79806582-79806601 None:intergenic 20.0%
!!! TGCTATCCTATTATTTTTTT+TGG - chr6_3:79806582-79806601 Msa0960400:intron 20.0%
!!! GCTATCCTATTATTTTTTTT+GGG - chr6_3:79806583-79806602 Msa0960400:intron 20.0%
!! ATCAACCCAAAAAAAATAAT+AGG + chr6_3:79806591-79806610 None:intergenic 20.0%
!! TATATTTAGAGAATTGGATT+TGG - chr6_3:79807276-79807295 Msa0960400:intron 20.0%
!! CTAAAGATAAAGTTATAGAA+AGG + chr6_3:79807478-79807497 None:intergenic 20.0%
!! TTAACTGAATTATGATTATG+TGG - chr6_3:79807645-79807664 Msa0960400:five_prime_UTR 20.0%
!! TAAAAAAAGTTCAACTGTAA+AGG - chr6_3:79807701-79807720 Msa0960400:five_prime_UTR 20.0%
!!! AGTTGATTTTATTAGGGTAA+TGG - chr6_3:79803075-79803094 Msa0960400:CDS 25.0%
! TTTGATCTGCTAAAAAATGA+AGG - chr6_3:79803178-79803197 Msa0960400:intron 25.0%
!!! TTGAACAATTTTTTAACGCT+TGG - chr6_3:79803283-79803302 Msa0960400:CDS 25.0%
!! ATTTTAAACAACCTGTACTT+TGG - chr6_3:79803328-79803347 Msa0960400:CDS 25.0%
!! TTTTAAACAACCTGTACTTT+GGG - chr6_3:79803329-79803348 Msa0960400:CDS 25.0%
! TACTGTGTTTGATTGTAAAA+CGG + chr6_3:79803398-79803417 None:intergenic 25.0%
!! AAAACTACCCTTCATTTTAA+GGG - chr6_3:79803523-79803542 Msa0960400:CDS 25.0%
! TAGATTACCCTTAAAATGAA+GGG + chr6_3:79803533-79803552 None:intergenic 25.0%
!! ATGCGTAATTTGATCATTTT+TGG - chr6_3:79803617-79803636 Msa0960400:intron 25.0%
!!! AATAAGCTTTACTTTTTGGT+CGG + chr6_3:79803888-79803907 None:intergenic 25.0%
!!! AGTTTTTTCAAGTCAAGAAT+CGG + chr6_3:79804001-79804020 None:intergenic 25.0%
! AAGACAAAAAAACGTATCTT+TGG + chr6_3:79804101-79804120 None:intergenic 25.0%
! TACTGATATCAAAAGAGAAA+AGG + chr6_3:79804680-79804699 None:intergenic 25.0%
! CGAAAAATAAGTGACAAAAA+AGG + chr6_3:79804703-79804722 None:intergenic 25.0%
!! AAGATGAATGACATTTTGAA+AGG - chr6_3:79804774-79804793 Msa0960400:CDS 25.0%
!! AATGAAGCAAATGAACTTTT+TGG + chr6_3:79805080-79805099 None:intergenic 25.0%
! ATAACATCTTCAATTATAGG+TGG + chr6_3:79805263-79805282 None:intergenic 25.0%
! GCAATAACATCTTCAATTAT+AGG + chr6_3:79805266-79805285 None:intergenic 25.0%
! TCAAAATGATAAGGTTCATT+TGG + chr6_3:79805578-79805597 None:intergenic 25.0%
! TGATAAATAAACTTAGAGGA+AGG + chr6_3:79805797-79805816 None:intergenic 25.0%
!!! TTATTTTTTGACTATGTAGC+TGG - chr6_3:79805829-79805848 Msa0960400:intron 25.0%
!! AAGTATTTTCTCACTATGAA+AGG + chr6_3:79805855-79805874 None:intergenic 25.0%
!! ATTTTCCTAGAAATTATCTG+TGG - chr6_3:79806283-79806302 Msa0960400:intron 25.0%
! TGATGGTATTGTTTGTATAA+GGG + chr6_3:79806314-79806333 None:intergenic 25.0%
! ATGATGGTATTGTTTGTATA+AGG + chr6_3:79806315-79806334 None:intergenic 25.0%
! GCAGTAATCATTTATTTCAA+AGG + chr6_3:79806360-79806379 None:intergenic 25.0%
! AAATGATTACTGCTATATAG+TGG - chr6_3:79806367-79806386 Msa0960400:intron 25.0%
! ATTCATGCTATCCTATTTAA+AGG - chr6_3:79806609-79806628 Msa0960400:intron 25.0%
!!! ACTTTTGTTTGCCTTTAAAT+AGG + chr6_3:79806623-79806642 None:intergenic 25.0%
! ATTACATTTGTGATCTAACA+TGG + chr6_3:79806792-79806811 None:intergenic 25.0%
! TGTTAGATCACAAATGTAAT+AGG - chr6_3:79806792-79806811 Msa0960400:five_prime_UTR 25.0%
! GTTAGATCACAAATGTAATA+GGG - chr6_3:79806793-79806812 Msa0960400:five_prime_UTR 25.0%
! CAAATGTAATAGGGTTTAAT+TGG - chr6_3:79806802-79806821 Msa0960400:five_prime_UTR 25.0%
!! TCATCTAGAATAATATTCTC+AGG + chr6_3:79806867-79806886 None:intergenic 25.0%
! GAGAATATTATTCTAGATGA+TGG - chr6_3:79806867-79806886 Msa0960400:intron 25.0%
! TTAAATCATGTATGCGAAAA+GGG - chr6_3:79806989-79807008 Msa0960400:intron 25.0%
! AACGAGAATATGAGATAATT+GGG + chr6_3:79807062-79807081 None:intergenic 25.0%
! CTTCGTTATATTTAGAGAAT+TGG - chr6_3:79807270-79807289 Msa0960400:intron 25.0%
! ATCAATGAAATTAGCTAACA+TGG - chr6_3:79807595-79807614 Msa0960400:five_prime_UTR 25.0%
!!! TTTTTTACCTTCTACAAACT+TGG + chr6_3:79807688-79807707 None:intergenic 25.0%
! ACGCAAAAAAGTGTGTAAAA+TGG - chr6_3:79802811-79802830 Msa0960400:three_prime_UTR 30.0%
! CAAAAAAGTGTGTAAAATGG+CGG - chr6_3:79802814-79802833 Msa0960400:three_prime_UTR 30.0%
! AACTTTTTAACCCAAAGTAC+AGG + chr6_3:79803342-79803361 None:intergenic 30.0%
TTGATTGTAAAACGGTTTCA+GGG + chr6_3:79803390-79803409 None:intergenic 30.0%
TTTGATTGTAAAACGGTTTC+AGG + chr6_3:79803391-79803410 None:intergenic 30.0%
! CAAAACTACCCTTCATTTTA+AGG - chr6_3:79803522-79803541 Msa0960400:CDS 30.0%
CTAGATTACCCTTAAAATGA+AGG + chr6_3:79803534-79803553 None:intergenic 30.0%
!! CTTCATTTTAAGGGTAATCT+AGG - chr6_3:79803532-79803551 Msa0960400:CDS 30.0%
AGAAAATTCAACTCAAGATG+TGG - chr6_3:79803764-79803783 Msa0960400:intron 30.0%
GAAAATTCAACTCAAGATGT+GGG - chr6_3:79803765-79803784 Msa0960400:intron 30.0%
!! TCATGTTTTTGATTCTCAAG+AGG - chr6_3:79803791-79803810 Msa0960400:intron 30.0%
AAGAGAAATAGAAAAGCAGT+TGG - chr6_3:79804258-79804277 Msa0960400:intron 30.0%
AGAGAAATAGAAAAGCAGTT+GGG - chr6_3:79804259-79804278 Msa0960400:intron 30.0%
!! GTTTGTTGAAGAAGTATTCA+TGG + chr6_3:79804370-79804389 None:intergenic 30.0%
AAACAACATAAACACAATGC+AGG + chr6_3:79804395-79804414 None:intergenic 30.0%
! TGTTGTTTGTCATTCTCTAT+TGG - chr6_3:79804407-79804426 Msa0960400:CDS 30.0%
TTCTTGATGTTATATTGGTC+AGG - chr6_3:79804442-79804461 Msa0960400:CDS 30.0%
TCATTGGATAATGAAGTAAC+CGG - chr6_3:79804603-79804622 Msa0960400:intron 30.0%
ATCTTATTCTCTTCAATAGC+TGG + chr6_3:79804759-79804778 None:intergenic 30.0%
AGATTTCAGATCAATTGGTT+GGG + chr6_3:79804919-79804938 None:intergenic 30.0%
AAGATTTCAGATCAATTGGT+TGG + chr6_3:79804920-79804939 None:intergenic 30.0%
! CTTTTTCTGACGTAGATAAT+TGG - chr6_3:79804976-79804995 Msa0960400:CDS 30.0%
TCAATTTCATGAGCTGAAAA+TGG + chr6_3:79805149-79805168 None:intergenic 30.0%
ATTGGTGAATAGTTTCTTGT+AGG + chr6_3:79805179-79805198 None:intergenic 30.0%
AAACTATTCACCAATTCACA+TGG - chr6_3:79805184-79805203 Msa0960400:CDS 30.0%
TCCACAATATCTTCAGTTAT+GGG + chr6_3:79805374-79805393 None:intergenic 30.0%
ACGTTGTCATCAAAATGATA+AGG + chr6_3:79805587-79805606 None:intergenic 30.0%
TAGTGTTTATGTACCTTTGA+TGG - chr6_3:79805972-79805991 Msa0960400:CDS 30.0%
GCTCATAGTTTAAAGATTGA+GGG + chr6_3:79806145-79806164 None:intergenic 30.0%
TGCTCATAGTTTAAAGATTG+AGG + chr6_3:79806146-79806165 None:intergenic 30.0%
GAAAACCACAGATAATTTCT+AGG + chr6_3:79806291-79806310 None:intergenic 30.0%
GATGGTATTGTTTGTATAAG+GGG + chr6_3:79806313-79806332 None:intergenic 30.0%
AAAATAATAGGATAGCATGG+AGG + chr6_3:79806579-79806598 None:intergenic 30.0%
AAGTCATCTGACAAATTTCA+AGG - chr6_3:79806639-79806658 Msa0960400:CDS 30.0%
! TATTATTCTAGATGATGGTC+TGG - chr6_3:79806872-79806891 Msa0960400:intron 30.0%
GTTAAATCATGTATGCGAAA+AGG - chr6_3:79806988-79807007 Msa0960400:intron 30.0%
GAACGAGAATATGAGATAAT+TGG + chr6_3:79807063-79807082 None:intergenic 30.0%
!! AAACCTTTGGAATATTGGAA+AGG - chr6_3:79807197-79807216 Msa0960400:intron 30.0%
!! AACCTTTGGAATATTGGAAA+GGG - chr6_3:79807198-79807217 Msa0960400:intron 30.0%
ACATTCTACACAGTAAGATT+AGG + chr6_3:79807302-79807321 None:intergenic 30.0%
!! AACAAATCTTTTGTTTGTGC+AGG - chr6_3:79807326-79807345 Msa0960400:intron 30.0%
ATTCAGAAGCTATCTCAAAA+AGG + chr6_3:79807448-79807467 None:intergenic 30.0%
ATTATCTCCAAGTTTGTAGA+AGG - chr6_3:79807678-79807697 Msa0960400:five_prime_UTR 30.0%
AACAGAGTGAAGGGTAAAAA+TGG - chr6_3:79802903-79802922 Msa0960400:three_prime_UTR 35.0%
CTGCTAAAAAATGAAGGACA+TGG - chr6_3:79803184-79803203 Msa0960400:intron 35.0%
! AAAGGTACATGCTAGACTTA+TGG - chr6_3:79803258-79803277 Msa0960400:intron 35.0%
! GGTCGACAAAAAGACTATTT+TGG - chr6_3:79803304-79803323 Msa0960400:CDS 35.0%
TGGGTTAAAAAGTTGTGATG+TGG - chr6_3:79803348-79803367 Msa0960400:CDS 35.0%
ACAGTACAGTACAGTACAAA+TGG - chr6_3:79803412-79803431 Msa0960400:intron 35.0%
!! GTTTTTGATTCTCAAGAGGA+TGG - chr6_3:79803795-79803814 Msa0960400:intron 35.0%
ATGGAGAATTACCTCGAAAA+CGG - chr6_3:79803814-79803833 Msa0960400:intron 35.0%
GGTAATAAATCCTCAACAGA+GGG + chr6_3:79803980-79803999 None:intergenic 35.0%
CAAAGTTTCTCTTGCATCAT+TGG - chr6_3:79804587-79804606 Msa0960400:intron 35.0%
ACTCTGTAAAATCTGTGCTT+TGG - chr6_3:79804638-79804657 Msa0960400:intron 35.0%
! TTGTGATTCTGAAGAACTAG+AGG - chr6_3:79804806-79804825 Msa0960400:intron 35.0%
! TGTGATTCTGAAGAACTAGA+GGG - chr6_3:79804807-79804826 Msa0960400:intron 35.0%
CGCAAAGATTTCAGATCAAT+TGG + chr6_3:79804924-79804943 None:intergenic 35.0%
! ATTGATCTGAAATCTTTGCG+AGG - chr6_3:79804924-79804943 Msa0960400:CDS 35.0%
! TTGATCTGAAATCTTTGCGA+GGG - chr6_3:79804925-79804944 Msa0960400:CDS 35.0%
! GAAAAAGCCTTTCTTTTGCT+TGG + chr6_3:79804963-79804982 None:intergenic 35.0%
GACGTAGATAATTGGTTGAA+AGG - chr6_3:79804984-79805003 Msa0960400:CDS 35.0%
ATATTCAGACACCTCTTAGA+CGG - chr6_3:79805012-79805031 Msa0960400:CDS 35.0%
!!! AATGAACTTTTTGGTGGTGT+GGG + chr6_3:79805071-79805090 None:intergenic 35.0%
!!! AAATGAACTTTTTGGTGGTG+TGG + chr6_3:79805072-79805091 None:intergenic 35.0%
! GAAGCAAATGAACTTTTTGG+TGG + chr6_3:79805077-79805096 None:intergenic 35.0%
! CATTGCAAAAGCACATTTCA+CGG - chr6_3:79805105-79805124 Msa0960400:CDS 35.0%
ATTGAAGATGTTATTGCTGC+TGG - chr6_3:79805269-79805288 Msa0960400:CDS 35.0%
TGGTGAGACAAATACAATTC+TGG - chr6_3:79805289-79805308 Msa0960400:CDS 35.0%
ATTCCAAGGAACACAATTCT+AGG - chr6_3:79805324-79805343 Msa0960400:CDS 35.0%
ATTCCTAGAATTGTGTTCCT+TGG + chr6_3:79805330-79805349 None:intergenic 35.0%
GGTGCATTAACTTTATCTGA+TGG + chr6_3:79805353-79805372 None:intergenic 35.0%
ACCCATAACTGAAGATATTG+TGG - chr6_3:79805370-79805389 Msa0960400:CDS 35.0%
GTCCACAATATCTTCAGTTA+TGG + chr6_3:79805375-79805394 None:intergenic 35.0%
! TTATCAACCAAGGACTTTTG+AGG + chr6_3:79805425-79805444 None:intergenic 35.0%
TTCGGTTGAATTATCAACCA+AGG + chr6_3:79805435-79805454 None:intergenic 35.0%
! TTGATAATTCAACCGAACCT+GGG - chr6_3:79805438-79805457 Msa0960400:CDS 35.0%
ATTAGCATTAAACCCAGGTT+CGG + chr6_3:79805453-79805472 None:intergenic 35.0%
GTGAATATAAACTTACCCAG+TGG + chr6_3:79805772-79805791 None:intergenic 35.0%
ATGCAATAAACTCTGCACAT+AGG - chr6_3:79805907-79805926 Msa0960400:CDS 35.0%
!! TTTTCCTTGGATCTGAAATC+AGG - chr6_3:79805930-79805949 Msa0960400:CDS 35.0%
! TTTCCTTGGATCTGAAATCA+GGG - chr6_3:79805931-79805950 Msa0960400:CDS 35.0%
! TCTGAAATCAGGGAAGAATT+TGG - chr6_3:79805941-79805960 Msa0960400:CDS 35.0%
AAGCCAATTCTATGGACAAA+AGG - chr6_3:79806049-79806068 Msa0960400:intron 35.0%
! AGACCTTTTGTCCATAGAAT+TGG + chr6_3:79806055-79806074 None:intergenic 35.0%
AAAAGAAAACCAGCAAAGCT+AGG + chr6_3:79806117-79806136 None:intergenic 35.0%
ATTCCAGCAAAAGAAAGAAC+TGG + chr6_3:79806462-79806481 None:intergenic 35.0%
! AGTTCTTTCTTTTGCTGGAA+TGG - chr6_3:79806461-79806480 Msa0960400:CDS 35.0%
! GTTCTTTCTTTTGCTGGAAT+GGG - chr6_3:79806462-79806481 Msa0960400:CDS 35.0%
ATGGAGGAAACTTAAAGTTC+TGG + chr6_3:79806563-79806582 None:intergenic 35.0%
GTCTGGTAGAAGAAAAATAG+CGG + chr6_3:79806770-79806789 None:intergenic 35.0%
ATTTGTGATCTAACATGGTC+TGG + chr6_3:79806787-79806806 None:intergenic 35.0%
!!! ACTCTTTTTTGCCCATTAAC+AGG + chr6_3:79806970-79806989 None:intergenic 35.0%
!! GGACAAAACCTTTGGAATAT+TGG - chr6_3:79807192-79807211 Msa0960400:intron 35.0%
!! ACCTTTGGAATATTGGAAAG+GGG - chr6_3:79807199-79807218 Msa0960400:intron 35.0%
ATATTGGAAAGGGGAAAGAA+TGG - chr6_3:79807208-79807227 Msa0960400:intron 35.0%
! AATGATTTAGCCTTCATGGT+TGG + chr6_3:79807404-79807423 None:intergenic 35.0%
! CACAAATGATTTAGCCTTCA+TGG + chr6_3:79807408-79807427 None:intergenic 35.0%
ACTACTAAGTACTTACATCC+AGG - chr6_3:79807544-79807563 Msa0960400:five_prime_UTR 35.0%
! AGAGAGCATACGATGAATCT+GGG + chr6_3:79802983-79803002 None:intergenic 40.0%
TTTGTGTCCTTTGTGTGTAC+AGG - chr6_3:79803671-79803690 Msa0960400:intron 40.0%
AAGTTCAGTGGGACTTAACA+AGG + chr6_3:79803697-79803716 None:intergenic 40.0%
ACAATGTTAGAGGACGACTT+GGG - chr6_3:79803732-79803751 Msa0960400:intron 40.0%
CGGTAATAAATCCTCAACAG+AGG + chr6_3:79803981-79804000 None:intergenic 40.0%
AATTCTTCATGGCCCATGAA+CGG - chr6_3:79804035-79804054 Msa0960400:intron 40.0%
CTTACTTTCCAACCGTTCAT+GGG + chr6_3:79804050-79804069 None:intergenic 40.0%
GGTTTAGTTGAATCCTGACT+TGG + chr6_3:79804301-79804320 None:intergenic 40.0%
GTCAGGATTCAACTAAACCA+CGG - chr6_3:79804302-79804321 Msa0960400:intron 40.0%
TCAGGATTCAACTAAACCAC+GGG - chr6_3:79804303-79804322 Msa0960400:intron 40.0%
GCCAGTTAGATACAGACATA+GGG - chr6_3:79804464-79804483 Msa0960400:CDS 40.0%
ACCCTATGTCTGTATCTAAC+TGG + chr6_3:79804468-79804487 None:intergenic 40.0%
TAGGGTTTCAACAGAAGCTT+TGG - chr6_3:79804482-79804501 Msa0960400:intron 40.0%
TTGTCAGTGTTATCACCAAC+AGG + chr6_3:79804564-79804583 None:intergenic 40.0%
!! GTTGGTGATAACACTGACAA+AGG - chr6_3:79804564-79804583 Msa0960400:intron 40.0%
ACAGAGTAGAATTCACTCAC+CGG + chr6_3:79804625-79804644 None:intergenic 40.0%
! AGGAGCAATGAATCTTTTGC+AGG - chr6_3:79804833-79804852 Msa0960400:intron 40.0%
! CAATGAATCTTTTGCAGGAG+AGG - chr6_3:79804838-79804857 Msa0960400:intron 40.0%
GATCAATTGGTTGGGTATCT+AGG + chr6_3:79804911-79804930 None:intergenic 40.0%
ACCAATTCACATGGTAAACC+AGG - chr6_3:79805193-79805212 Msa0960400:CDS 40.0%
TCCTGGTTTACCATGTGAAT+TGG + chr6_3:79805197-79805216 None:intergenic 40.0%
AACCAGGAAGTCGATATTGT+TGG - chr6_3:79805209-79805228 Msa0960400:CDS 40.0%
!! AACCAACAATATCGACTTCC+TGG + chr6_3:79805214-79805233 None:intergenic 40.0%
! GGAGACTTCTGAAAATTCCA+AGG - chr6_3:79805310-79805329 Msa0960400:CDS 40.0%
GTAATGGTGCAATTTCTGTC+AGG + chr6_3:79805401-79805420 None:intergenic 40.0%
!! CAAGGACTTTTGAGGAGTAA+TGG + chr6_3:79805417-79805436 None:intergenic 40.0%
CATTACTCCTCAAAAGTCCT+TGG - chr6_3:79805415-79805434 Msa0960400:CDS 40.0%
!! GTTGATAATTCAACCGAACC+TGG - chr6_3:79805437-79805456 Msa0960400:CDS 40.0%
TCAGCATTAGCATTAAACCC+AGG + chr6_3:79805458-79805477 None:intergenic 40.0%
GTTGACATGGATGTGGATAT+TGG - chr6_3:79805494-79805513 Msa0960400:CDS 40.0%
! GATATTGGTTGCAGTGGTAT+GGG - chr6_3:79805509-79805528 Msa0960400:CDS 40.0%
TTGCAGTGGTATGGGAAAAA+GGG - chr6_3:79805517-79805536 Msa0960400:CDS 40.0%
TGGTATGGGAAAAAGGGTTA+TGG - chr6_3:79805523-79805542 Msa0960400:CDS 40.0%
TTATGGATGACACAGTAGGA+AGG - chr6_3:79805540-79805559 Msa0960400:CDS 40.0%
GATACTGGAAGAAAACATGC+AGG - chr6_3:79805696-79805715 Msa0960400:CDS 40.0%
TTGAGATTCGCATCATCTGT+TGG + chr6_3:79805739-79805758 None:intergenic 40.0%
AGATGATGCGAATCTCAACT+CGG - chr6_3:79805741-79805760 Msa0960400:CDS 40.0%
AAGTGAGTTAGTGCCATCAA+AGG + chr6_3:79805988-79806007 None:intergenic 40.0%
TGCGTATCAAGCCAATTCTA+TGG - chr6_3:79806041-79806060 Msa0960400:intron 40.0%
AGGTCTAGAAGATCAGATGA+TGG - chr6_3:79806069-79806088 Msa0960400:intron 40.0%
GAACCTGTAAACACTGTTCT+GGG + chr6_3:79806095-79806114 None:intergenic 40.0%
! CGTACACATGATGATGATGA+TGG + chr6_3:79806331-79806350 None:intergenic 40.0%
TGGTCATATACATGTTCCGA+AGG - chr6_3:79806387-79806406 Msa0960400:intron 40.0%
GGTCATATACATGTTCCGAA+GGG - chr6_3:79806388-79806407 Msa0960400:intron 40.0%
AGATCATTTGTTTGAAGGCC+AGG - chr6_3:79806521-79806540 Msa0960400:intron 40.0%
GGATTGCAAATCAAATCTCC+TGG + chr6_3:79806542-79806561 None:intergenic 40.0%
GTGACAGAATTTCACACCTT+TGG - chr6_3:79806741-79806760 Msa0960400:CDS 40.0%
AGAAAAATAGCGGCAACCAA+AGG + chr6_3:79806760-79806779 None:intergenic 40.0%
AGAATTGAATCACTGACCTC+TGG - chr6_3:79806915-79806934 Msa0960400:intron 40.0%
TCCCCTTTCCAATATTCCAA+AGG + chr6_3:79807203-79807222 None:intergenic 40.0%
AAAGGGGAAAGAATGGTGTA+TGG - chr6_3:79807215-79807234 Msa0960400:intron 40.0%
! CAGGTTTGAGTACTGTCATT+GGG - chr6_3:79807345-79807364 Msa0960400:intron 40.0%
! AGGTTTGAGTACTGTCATTG+GGG - chr6_3:79807346-79807365 Msa0960400:intron 40.0%
!! ACATAATCATTGCTGACTCC+TGG + chr6_3:79807565-79807584 None:intergenic 40.0%
ACTGTCAAGCAACGAAGAAG+AGG + chr6_3:79802880-79802899 None:intergenic 45.0%
TGACAGTCTCAACAGAGTGA+AGG - chr6_3:79802893-79802912 Msa0960400:three_prime_UTR 45.0%
GACAGTCTCAACAGAGTGAA+GGG - chr6_3:79802894-79802913 Msa0960400:three_prime_UTR 45.0%
! GGGATCGTTGTTGTTCTACT+TGG + chr6_3:79802963-79802982 None:intergenic 45.0%
! GAGAGAGCATACGATGAATC+TGG + chr6_3:79802984-79803003 None:intergenic 45.0%
TGTAAAACGGTTTCAGGGAC+TGG + chr6_3:79803385-79803404 None:intergenic 45.0%
AATAAGAGACTCGACACGAC+AGG + chr6_3:79803444-79803463 None:intergenic 45.0%
AACAAGGCCTGTACACACAA+AGG + chr6_3:79803681-79803700 None:intergenic 45.0%
GTCGTCCTCTAACATTGTCA+TGG + chr6_3:79803730-79803749 None:intergenic 45.0%
GACAATGTTAGAGGACGACT+TGG - chr6_3:79803731-79803750 Msa0960400:intron 45.0%
GAAAAAACTGACAGATCCCG+AGG - chr6_3:79804012-79804031 Msa0960400:intron 45.0%
AGATCCCGAGGAATTCTTCA+TGG - chr6_3:79804024-79804043 Msa0960400:intron 45.0%
ATGGGCCATGAAGAATTCCT+CGG + chr6_3:79804032-79804051 None:intergenic 45.0%
CCTTACTTTCCAACCGTTCA+TGG + chr6_3:79804051-79804070 None:intergenic 45.0%
CCATGAACGGTTGGAAAGTA+AGG - chr6_3:79804048-79804067 Msa0960400:intron 45.0%
CGATTAAACCCAGGAATTCC+CGG + chr6_3:79804337-79804356 None:intergenic 45.0%
CGGGAATTCCTGGGTTTAAT+CGG - chr6_3:79804335-79804354 Msa0960400:intron 45.0%
GAATTCCTGGGTTTAATCGG+AGG - chr6_3:79804338-79804357 Msa0960400:intron 45.0%
GGCCAGTTAGATACAGACAT+AGG - chr6_3:79804463-79804482 Msa0960400:CDS 45.0%
GTCGGATTCAAATGCCTCTT+GGG + chr6_3:79804532-79804551 None:intergenic 45.0%
TGTCGGATTCAAATGCCTCT+TGG + chr6_3:79804533-79804552 None:intergenic 45.0%
ACCAACAGGATCAAGACTGT+CGG + chr6_3:79804550-79804569 None:intergenic 45.0%
TCTGAAGAACTAGAGGGTGA+AGG - chr6_3:79804813-79804832 Msa0960400:intron 45.0%
! TCTTTTGCAGGAGAGGTTAC+AGG - chr6_3:79804845-79804864 Msa0960400:intron 45.0%
GTCGAAGCCAAGCAAAAGAA+AGG - chr6_3:79804953-79804972 Msa0960400:CDS 45.0%
GAATGAACCTGCTGTTGACA+TGG - chr6_3:79805481-79805500 Msa0960400:CDS 45.0%
! GATGTGGATATTGGTTGCAG+TGG - chr6_3:79805503-79805522 Msa0960400:CDS 45.0%
! GGATATTGGTTGCAGTGGTA+TGG - chr6_3:79805508-79805527 Msa0960400:CDS 45.0%
GTTGCAGTGGTATGGGAAAA+AGG - chr6_3:79805516-79805535 Msa0960400:CDS 45.0%
AGGGTTATGGATGACACAGT+AGG - chr6_3:79805536-79805555 Msa0960400:CDS 45.0%
! CTCTGCACATAGGTTTTCCT+TGG - chr6_3:79805917-79805936 Msa0960400:CDS 45.0%
CTTCCCTGATTTCAGATCCA+AGG + chr6_3:79805937-79805956 None:intergenic 45.0%
GGAACCTGTAAACACTGTTC+TGG + chr6_3:79806096-79806115 None:intergenic 45.0%
!! TTACAGGTTCCTAGCTTTGC+TGG - chr6_3:79806105-79806124 Msa0960400:intron 45.0%
! CTGCCAGTTCTTTCTTTTGC+TGG - chr6_3:79806456-79806475 Msa0960400:CDS 45.0%
! CTAGATGATGGTCTGGTTGA+TGG - chr6_3:79806879-79806898 Msa0960400:intron 45.0%
ATGTATGCGAAAAGGGTCCA+AGG - chr6_3:79806996-79807015 Msa0960400:intron 45.0%
TGTATGCGAAAAGGGTCCAA+GGG - chr6_3:79806997-79807016 Msa0960400:intron 45.0%
! TTGGGAAGTACAAACCTGCA+AGG + chr6_3:79807044-79807063 None:intergenic 45.0%
TATTCCATCTTCCCAGATGC+TGG - chr6_3:79807128-79807147 Msa0960400:intron 45.0%
!! CAAAGGTTTTGTCCTGAACC+TGG + chr6_3:79807186-79807205 None:intergenic 45.0%
CAGGTTCAGGACAAAACCTT+TGG - chr6_3:79807184-79807203 Msa0960400:intron 45.0%
TGTACTCACTCTCGTGTACA+CGG + chr6_3:79807241-79807260 None:intergenic 45.0%
! GCAGGTTTGAGTACTGTCAT+TGG - chr6_3:79807344-79807363 Msa0960400:intron 45.0%
TGATGGGAAACCAACCATGA+AGG - chr6_3:79807391-79807410 Msa0960400:intron 45.0%
TCCCACTGAACTTGTAGAGC+AGG - chr6_3:79803704-79803723 Msa0960400:intron 50.0%
GCCTGCTCTACAAGTTCAGT+GGG + chr6_3:79803708-79803727 None:intergenic 50.0%
GCAGGCCATGACAATGTTAG+AGG - chr6_3:79803722-79803741 Msa0960400:intron 50.0%
TTACCTCGAAAACGGAGACC+CGG - chr6_3:79803822-79803841 Msa0960400:intron 50.0%
TGCACGATTGAGGCCTAAAC+CGG + chr6_3:79803844-79803863 None:intergenic 50.0%
TCGGCTTAAGCGAGAAACGT+GGG + chr6_3:79803869-79803888 None:intergenic 50.0%
CTTTGACAGACCCTCTGTTG+AGG - chr6_3:79803967-79803986 Msa0960400:intron 50.0%
TGGGCCATGAAGAATTCCTC+GGG + chr6_3:79804031-79804050 None:intergenic 50.0%
TGTGTCATCTCAGCCAAGTC+AGG - chr6_3:79804285-79804304 Msa0960400:intron 50.0%
CGTTACCTCCGATTAAACCC+AGG + chr6_3:79804346-79804365 None:intergenic 50.0%
TGATGTCCTATCCTCCCAAG+AGG - chr6_3:79804515-79804534 Msa0960400:intron 50.0%
CAAATGCCTCTTGGGAGGAT+AGG + chr6_3:79804524-79804543 None:intergenic 50.0%
GGATTCAAATGCCTCTTGGG+AGG + chr6_3:79804529-79804548 None:intergenic 50.0%
TCCGACAGTCTTGATCCTGT+TGG - chr6_3:79804546-79804565 Msa0960400:intron 50.0%
GGTTGGGTATCTAGGAAGTC+TGG + chr6_3:79804903-79804922 None:intergenic 50.0%
ACACCTCTTAGACGGAGTGT+AGG - chr6_3:79805020-79805039 Msa0960400:CDS 50.0%
CATCCTACACTCCGTCTAAG+AGG + chr6_3:79805026-79805045 None:intergenic 50.0%
ACCTGCTGTTGACATGGATG+TGG - chr6_3:79805487-79805506 Msa0960400:CDS 50.0%
TCCACATCCATGTCAACAGC+AGG + chr6_3:79805491-79805510 None:intergenic 50.0%
TCTCAACTCGGAGATTCCAC+TGG - chr6_3:79805753-79805772 Msa0960400:intron 50.0%
CTCAACTCGGAGATTCCACT+GGG - chr6_3:79805754-79805773 Msa0960400:intron 50.0%
TGGCCCAGAACAGTGTTTAC+AGG - chr6_3:79806089-79806108 Msa0960400:intron 50.0%
TATCCTAGGGGTAGACCCTT+CGG + chr6_3:79806406-79806425 None:intergenic 50.0%
GAATCACTGACCTCTGGTAC+AGG - chr6_3:79806921-79806940 Msa0960400:intron 50.0%
CTGACCTCTGGTACAGGAAA+AGG - chr6_3:79806927-79806946 Msa0960400:intron 50.0%
! ACTGCCTTTTCCTGTACCAG+AGG + chr6_3:79806934-79806953 None:intergenic 50.0%
CTGGTACAGGAAAAGGCAGT+TGG - chr6_3:79806934-79806953 Msa0960400:intron 50.0%
!! GGAAAAGGCAGTTGGTTCTG+CGG - chr6_3:79806942-79806961 Msa0960400:intron 50.0%
GTTCTGCGGCACCTGTTAAT+GGG - chr6_3:79806956-79806975 Msa0960400:intron 50.0%
CCTCAGAAGTCTCTTACCCT+TGG + chr6_3:79807016-79807035 None:intergenic 50.0%
CCAAGGGTAAGAGACTTCTG+AGG - chr6_3:79807013-79807032 Msa0960400:intron 50.0%
TGTACCAGCATCTGGGAAGA+TGG + chr6_3:79807135-79807154 None:intergenic 50.0%
TCCCAGATGCTGGTACATCA+TGG - chr6_3:79807138-79807157 Msa0960400:intron 50.0%
CCCATGATGTACCAGCATCT+GGG + chr6_3:79807142-79807161 None:intergenic 50.0%
CCCAGATGCTGGTACATCAT+GGG - chr6_3:79807139-79807158 Msa0960400:intron 50.0%
TCCCATGATGTACCAGCATC+TGG + chr6_3:79807143-79807162 None:intergenic 50.0%
! CATCATGGGAGTCTGGAGTA+AGG - chr6_3:79807153-79807172 Msa0960400:intron 50.0%
!! TAAGGAGAAGCACCAGGTTC+AGG - chr6_3:79807171-79807190 Msa0960400:intron 50.0%
TGCATGTCTCCTGGAAGTGA+TGG - chr6_3:79807374-79807393 Msa0960400:intron 50.0%
GCATGTCTCCTGGAAGTGAT+GGG - chr6_3:79807375-79807394 Msa0960400:intron 50.0%
! GTTGGTTTCCCATCACTTCC+AGG + chr6_3:79807386-79807405 None:intergenic 50.0%
GGCCTGCTCTACAAGTTCAG+TGG + chr6_3:79803709-79803728 None:intergenic 55.0%
! AAACCGGGTCTCCGTTTTCG+AGG + chr6_3:79803828-79803847 None:intergenic 55.0%
CGAAAACGGAGACCCGGTTT+AGG - chr6_3:79803828-79803847 Msa0960400:intron 55.0%
GCACGATTGAGGCCTAAACC+GGG + chr6_3:79803843-79803862 None:intergenic 55.0%
! GTCGGCTTAAGCGAGAAACG+TGG + chr6_3:79803870-79803889 None:intergenic 55.0%
CTTCATGGCCCATGAACGGT+TGG - chr6_3:79804039-79804058 Msa0960400:intron 55.0%
TAAACCACGGGAACGTCGAC+CGG - chr6_3:79804315-79804334 Msa0960400:intron 55.0%
AACGTCGACCGGGAATTCCT+GGG - chr6_3:79804326-79804345 Msa0960400:intron 55.0%
GGTGGAGTCAGCTCATCTGA+CGG + chr6_3:79805245-79805264 None:intergenic 55.0%
GGTTCTGCGGCACCTGTTAA+TGG - chr6_3:79806955-79806974 Msa0960400:intron 55.0%
! CTTCTGAGGAAGAGCCTTGC+AGG - chr6_3:79807027-79807046 Msa0960400:intron 55.0%
GCTGGTACATCATGGGAGTC+TGG - chr6_3:79807146-79807165 Msa0960400:intron 55.0%
!! CTGGAGTAAGGAGAAGCACC+AGG - chr6_3:79807165-79807184 Msa0960400:intron 55.0%
AACGTGGGCGTGCACGATTG+AGG + chr6_3:79803854-79803873 None:intergenic 60.0%
AAACCACGGGAACGTCGACC+GGG - chr6_3:79804316-79804335 Msa0960400:intron 60.0%
GAACGTCGACCGGGAATTCC+TGG - chr6_3:79804325-79804344 Msa0960400:intron 60.0%
GTTCCGAAGGGTCTACCCCT+AGG - chr6_3:79806400-79806419 Msa0960400:intron 60.0%
GGGGTGAAGTGCATGTCTCC+TGG - chr6_3:79807365-79807384 Msa0960400:intron 60.0%
ATTCCCGGTCGACGTTCCCG+TGG + chr6_3:79804322-79804341 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 79802770 79807744 79802770 ID=Msa0960400;Name=Msa0960400
chr6_3 mRNA 79802770 79807744 79802770 ID=Msa0960400-mRNA-1;Parent=Msa0960400;Name=Msa0960400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=258|1|1|1|0.9|0.90|11|272|628
chr6_3 exon 79802770 79803166 79802770 ID=Msa0960400-mRNA-1:exon:14303;Parent=Msa0960400-mRNA-1
chr6_3 exon 79803263 79803370 79803263 ID=Msa0960400-mRNA-1:exon:14302;Parent=Msa0960400-mRNA-1
chr6_3 exon 79803466 79803571 79803466 ID=Msa0960400-mRNA-1:exon:14301;Parent=Msa0960400-mRNA-1
chr6_3 exon 79804404 79804492 79804404 ID=Msa0960400-mRNA-1:exon:14300;Parent=Msa0960400-mRNA-1
chr6_3 exon 79804739 79804817 79804739 ID=Msa0960400-mRNA-1:exon:14299;Parent=Msa0960400-mRNA-1
chr6_3 exon 79804910 79805763 79804910 ID=Msa0960400-mRNA-1:exon:14298;Parent=Msa0960400-mRNA-1
chr6_3 exon 79805890 79806050 79805890 ID=Msa0960400-mRNA-1:exon:14297;Parent=Msa0960400-mRNA-1
chr6_3 exon 79806155 79806263 79806155 ID=Msa0960400-mRNA-1:exon:14296;Parent=Msa0960400-mRNA-1
chr6_3 exon 79806450 79806538 79806450 ID=Msa0960400-mRNA-1:exon:14295;Parent=Msa0960400-mRNA-1
chr6_3 exon 79806619 79806821 79806619 ID=Msa0960400-mRNA-1:exon:14294;Parent=Msa0960400-mRNA-1
chr6_3 exon 79807523 79807744 79807523 ID=Msa0960400-mRNA-1:exon:14293;Parent=Msa0960400-mRNA-1
chr6_3 five_prime_UTR 79807523 79807744 79807523 ID=Msa0960400-mRNA-1:five_prime_utr;Parent=Msa0960400-mRNA-1
chr6_3 five_prime_UTR 79806786 79806821 79806786 ID=Msa0960400-mRNA-1:five_prime_utr;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79806619 79806785 79806619 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79806450 79806538 79806450 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79806155 79806263 79806155 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79805890 79806050 79805890 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79804910 79805763 79804910 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79804739 79804817 79804739 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79804404 79804492 79804404 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79803466 79803571 79803466 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79803263 79803370 79803263 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 CDS 79803042 79803166 79803042 ID=Msa0960400-mRNA-1:cds;Parent=Msa0960400-mRNA-1
chr6_3 three_prime_UTR 79802770 79803041 79802770 ID=Msa0960400-mRNA-1:three_prime_utr;Parent=Msa0960400-mRNA-1
Gene Sequence

>Msa0960400

ATGACAATGTTAGAGGACGACTTGGGATTCTGTACAGAAAATTCAACTCAAGATGTGGGAAATCATGTTTTTGATTCTCAAGAGGATGGAGAATTACCTCGAAAACGGAGACCCGGTTTAGGCCTCAATCGTGCACGCCCACGTTTCTCGCTTAAGCCGACCAAAAAACCCTCTGTTGAGGATTTATTACCGATTCTTGACTTGAAAAAACTGACAGATCCCGAGGAATTCTTCATGGCCCATGAACGGTTGGAAAATGCAAAAAGAGAAATAGAAAAGCAGTTGGGTATTGTGTCATCTCAGCCAAGTCAGGATTCAACTAAACCACGGGAACGTCGACCGGGAATTCCTGGGTTTAATCGGAGGCCAGTTAGATACAGACATAGGGTTTCAACAGAAGCTTTGGACAATAATGATGATGTCCTATCCTCCCAAGAGGCATTTGAATCCGACAGTCTTGATCCTGTTGGTGATAACACTGACAAAGGCAAAGTTTCTCTTGCATCATTGGATAATGAAGTAACCGATTCACCAGCTATTGAAGAGAATAAGATGAATGACATTTTGAAAGGATTGCTTGATTGTGATTCTGAAGAACTAGAGGGTGAAGGAGCAATGAATCTTTTGCAGGAGAGGTTACAGGTCAAATCGATTGTTTTCGAGAAATTATCTGTTCCAGACTTCCTAGATACCCAACCAATTGATCTGAAATCTTTGCGAGGGACTTTGTCGAAGCCAAGCAAAAGAAAGGCTTTTTCTGACGTAGATAATTGGTTGAAAGGAATGAATATTCAGACACCTCTTAGACGGAGTGTAGGATGCGCTGAGAAGCAATTAGCTTCACCCACACCACCAAAAAGTTCATTTGCTTCATTGTCATCATTGCAAAAGCACATTTCACGGTCAAAGCTATCTACAGATCCATTTTCAGCTCATGAAATTGATAATGTACCTACAAGAAACTATTCACCAATTCACATGGTAAACCAGGAAGTCGATATTGTTGGTTCTAGTAAGCCGTCAGATGAGCTGACTCCACCTATAATTGAAGATGTTATTGCTGCTGGTGAGACAAATACAATTCTGGAGACTTCTGAAAATTCCAAGGAACACAATTCTAGGAATCCATCAGATAAAGTTAATGCACCCATAACTGAAGATATTGTGGACAATCCTGACAGAAATTGCACCATTACTCCTCAAAAGTCCTTGGTTGATAATTCAACCGAACCTGGGTTTAATGCTAATGCTGACTCGAATGAACCTGCTGTTGACATGGATGTGGATATTGGTTGCAGTGGTATGGGAAAAAGGGTTATGGATGACACAGTAGGAAGGCAAAATGCTGAGCCAAATGAACCTTATCATTTTGATGACAACATACTGGAAGAAAACATGCAGGAATTTACAACTTCTATACCAACAGATGATGCGAATCTCAACTCGGAGATTCCACTGGCTGATCAATCAAATGCAGTTGCGTATCAAGCCAATTCTATGGACAAAAGGTCTAGAAGATCAGATGATGGCCCAGAACAGTGTTTACAGGAAAAGGCAGTTGGTTCTGCGGCACCTGTTAATGGGCAAAAAAGAGTTAAATCATGTATGCGAAAAGGGTCCAAGGGTAAGAGACTTCTGAGGAAGAGCCTTGCAGATGCTGGTACATCATGGGAGTCTGGAGTAAGGAGAAGCACCAGGTTCAGGACAAAACCTTTGGAATATTGGAAAGGGGAAAGAATGGTGTATGGCCGTGTACACGAGAGTTTGAGTACTGTCATTGGGGTGAAGTGCATGTCTCCTGGAAGTGATGGGAAACCAACCATGAAGGCTAAATCATTTGTGTCAGATAAATACAAAGACCTTTTTGAGATAGCTTCTGAATATTGA

Protein sequence

>Msa0960400

MTMLEDDLGFCTENSTQDVGNHVFDSQEDGELPRKRRPGLGLNRARPRFSLKPTKKPSVEDLLPILDLKKLTDPEEFFMAHERLENAKREIEKQLGIVSSQPSQDSTKPRERRPGIPGFNRRPVRYRHRVSTEALDNNDDVLSSQEAFESDSLDPVGDNTDKGKVSLASLDNEVTDSPAIEENKMNDILKGLLDCDSEELEGEGAMNLLQERLQVKSIVFEKLSVPDFLDTQPIDLKSLRGTLSKPSKRKAFSDVDNWLKGMNIQTPLRRSVGCAEKQLASPTPPKSSFASLSSLQKHISRSKLSTDPFSAHEIDNVPTRNYSPIHMVNQEVDIVGSSKPSDELTPPIIEDVIAAGETNTILETSENSKEHNSRNPSDKVNAPITEDIVDNPDRNCTITPQKSLVDNSTEPGFNANADSNEPAVDMDVDIGCSGMGKRVMDDTVGRQNAEPNEPYHFDDNILEENMQEFTTSIPTDDANLNSEIPLADQSNAVAYQANSMDKRSRRSDDGPEQCLQEKAVGSAAPVNGQKRVKSCMRKGSKGKRLLRKSLADAGTSWESGVRRSTRFRTKPLEYWKGERMVYGRVHESLSTVIGVKCMSPGSDGKPTMKAKSFVSDKYKDLFEIASEY*